AutoCloner

Multiple sequence alignment - TraesCS7A01G070000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G070000	chr7A	100.000	3816	0	0	1	3816	35695602	35699417	0.000000e+00	7047.0
1	TraesCS7A01G070000	chr7A	93.960	745	40	5	978	1720	35746355	35747096	0.000000e+00	1122.0
2	TraesCS7A01G070000	chr7A	93.519	540	33	2	1	539	646090552	646090014	0.000000e+00	802.0
3	TraesCS7A01G070000	chr7A	88.333	60	3	2	3121	3176	40881167	40881226	6.840000e-08	69.4
4	TraesCS7A01G070000	chr4A	93.119	2587	123	26	544	3100	687813009	687815570	0.000000e+00	3740.0
5	TraesCS7A01G070000	chr4A	95.108	2167	93	7	934	3100	687830965	687833118	0.000000e+00	3402.0
6	TraesCS7A01G070000	chr4A	94.848	2174	102	5	930	3100	687892464	687894630	0.000000e+00	3386.0
7	TraesCS7A01G070000	chr4A	93.539	2167	104	10	934	3100	687919283	687921413	0.000000e+00	3193.0
8	TraesCS7A01G070000	chr4A	91.572	1946	158	4	988	2928	688327794	688325850	0.000000e+00	2680.0
9	TraesCS7A01G070000	chr4A	91.461	1944	160	4	990	2928	688375395	688373453	0.000000e+00	2665.0
10	TraesCS7A01G070000	chr4A	91.040	346	29	2	939	1284	687928551	687928894	2.080000e-127	466.0
11	TraesCS7A01G070000	chr7D	95.242	2186	88	7	927	3100	36045220	36043039	0.000000e+00	3446.0
12	TraesCS7A01G070000	chr7D	91.183	1293	103	6	1728	3013	35552400	35553688	0.000000e+00	1746.0
13	TraesCS7A01G070000	chr7D	97.056	1019	30	0	1818	2836	35798298	35797280	0.000000e+00	1716.0
14	TraesCS7A01G070000	chr7D	97.031	640	17	2	3177	3816	503342139	503342776	0.000000e+00	1075.0
15	TraesCS7A01G070000	chr7D	95.427	656	29	1	988	1642	35551416	35552071	0.000000e+00	1044.0
16	TraesCS7A01G070000	chr7D	91.888	715	50	4	926	1640	35799167	35798461	0.000000e+00	992.0
17	TraesCS7A01G070000	chr7D	93.692	539	29	4	1	538	30383966	30384500	0.000000e+00	802.0
18	TraesCS7A01G070000	chr7D	93.135	539	32	3	1	538	13126020	13126554	0.000000e+00	785.0
19	TraesCS7A01G070000	chr7D	84.272	426	30	16	539	929	36045719	36045296	7.740000e-102	381.0
20	TraesCS7A01G070000	chr7D	93.583	187	9	1	2994	3177	35796971	35796785	3.760000e-70	276.0
21	TraesCS7A01G070000	chr3B	94.074	540	27	3	1	539	815861999	815861464	0.000000e+00	815.0
22	TraesCS7A01G070000	chr3B	93.780	418	23	3	3174	3590	412597775	412598190	3.240000e-175	625.0
23	TraesCS7A01G070000	chr1A	93.715	541	29	3	1	540	12427724	12427188	0.000000e+00	806.0
24	TraesCS7A01G070000	chr1A	87.719	57	5	2	3020	3075	558188316	558188261	8.850000e-07	65.8
25	TraesCS7A01G070000	chr1A	93.182	44	1	1	3135	3176	533160300	533160343	3.180000e-06	63.9
26	TraesCS7A01G070000	chr1D	93.566	544	26	4	1	539	299812736	299813275	0.000000e+00	802.0
27	TraesCS7A01G070000	chr1D	83.750	80	7	3	3020	3098	141215335	141215261	1.900000e-08	71.3
28	TraesCS7A01G070000	chr5A	93.519	540	30	3	1	539	662404805	662404270	0.000000e+00	798.0
29	TraesCS7A01G070000	chr6D	93.173	542	28	4	1	540	350207115	350206581	0.000000e+00	787.0
30	TraesCS7A01G070000	chr6A	93.123	538	31	4	1	537	97584652	97585184	0.000000e+00	784.0
31	TraesCS7A01G070000	chr7B	86.406	640	43	8	3175	3814	296319629	296319034	0.000000e+00	660.0
32	TraesCS7A01G070000	chr6B	82.992	635	102	2	3178	3812	240903187	240902559	1.540000e-158	569.0
33	TraesCS7A01G070000	chrUn	89.655	87	9	0	2927	3013	233504552	233504638	1.120000e-20	111.0
34	TraesCS7A01G070000	chr2D	78.102	137	19	7	539	673	14225455	14225328	4.090000e-10	76.8
35	TraesCS7A01G070000	chr5D	87.719	57	5	2	3020	3075	528755094	528755039	8.850000e-07	65.8
36	TraesCS7A01G070000	chr1B	93.182	44	1	1	3135	3176	589363719	589363762	3.180000e-06	63.9
37	TraesCS7A01G070000	chr1B	80.723	83	11	5	3020	3098	88754780	88754699	4.120000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G070000	chr7A	35695602	35699417	3815	False	7047.000000	7047	100.000000	1	3816	1	chr7A.!!$F1	3815
1	TraesCS7A01G070000	chr7A	35746355	35747096	741	False	1122.000000	1122	93.960000	978	1720	1	chr7A.!!$F2	742
2	TraesCS7A01G070000	chr7A	646090014	646090552	538	True	802.000000	802	93.519000	1	539	1	chr7A.!!$R1	538
3	TraesCS7A01G070000	chr4A	687813009	687815570	2561	False	3740.000000	3740	93.119000	544	3100	1	chr4A.!!$F1	2556
4	TraesCS7A01G070000	chr4A	687830965	687833118	2153	False	3402.000000	3402	95.108000	934	3100	1	chr4A.!!$F2	2166
5	TraesCS7A01G070000	chr4A	687892464	687894630	2166	False	3386.000000	3386	94.848000	930	3100	1	chr4A.!!$F3	2170
6	TraesCS7A01G070000	chr4A	687919283	687921413	2130	False	3193.000000	3193	93.539000	934	3100	1	chr4A.!!$F4	2166
7	TraesCS7A01G070000	chr4A	688325850	688327794	1944	True	2680.000000	2680	91.572000	988	2928	1	chr4A.!!$R1	1940
8	TraesCS7A01G070000	chr4A	688373453	688375395	1942	True	2665.000000	2665	91.461000	990	2928	1	chr4A.!!$R2	1938
9	TraesCS7A01G070000	chr7D	36043039	36045719	2680	True	1913.500000	3446	89.757000	539	3100	2	chr7D.!!$R2	2561
10	TraesCS7A01G070000	chr7D	35551416	35553688	2272	False	1395.000000	1746	93.305000	988	3013	2	chr7D.!!$F4	2025
11	TraesCS7A01G070000	chr7D	503342139	503342776	637	False	1075.000000	1075	97.031000	3177	3816	1	chr7D.!!$F3	639
12	TraesCS7A01G070000	chr7D	35796785	35799167	2382	True	994.666667	1716	94.175667	926	3177	3	chr7D.!!$R1	2251
13	TraesCS7A01G070000	chr7D	30383966	30384500	534	False	802.000000	802	93.692000	1	538	1	chr7D.!!$F2	537
14	TraesCS7A01G070000	chr7D	13126020	13126554	534	False	785.000000	785	93.135000	1	538	1	chr7D.!!$F1	537
15	TraesCS7A01G070000	chr3B	815861464	815861999	535	True	815.000000	815	94.074000	1	539	1	chr3B.!!$R1	538
16	TraesCS7A01G070000	chr1A	12427188	12427724	536	True	806.000000	806	93.715000	1	540	1	chr1A.!!$R1	539
17	TraesCS7A01G070000	chr1D	299812736	299813275	539	False	802.000000	802	93.566000	1	539	1	chr1D.!!$F1	538
18	TraesCS7A01G070000	chr5A	662404270	662404805	535	True	798.000000	798	93.519000	1	539	1	chr5A.!!$R1	538
19	TraesCS7A01G070000	chr6D	350206581	350207115	534	True	787.000000	787	93.173000	1	540	1	chr6D.!!$R1	539
20	TraesCS7A01G070000	chr6A	97584652	97585184	532	False	784.000000	784	93.123000	1	537	1	chr6A.!!$F1	536
21	TraesCS7A01G070000	chr7B	296319034	296319629	595	True	660.000000	660	86.406000	3175	3814	1	chr7B.!!$R1	639
22	TraesCS7A01G070000	chr6B	240902559	240903187	628	True	569.000000	569	82.992000	3178	3812	1	chr6B.!!$R1	634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
420	425	0.179184	GTCGGCGTGTTTTTGTGTGT	60.179	50.0	6.85	3.72	F
1289	1412	0.389391	CTGGGCCACATCTACTACCG	59.611	60.0	0.00	4.02	F
2515	2890	0.038744	CCACCACTTTCATCCTGCCT	59.961	55.0	0.00	4.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1431	1554	1.004560	CGAGCACACCACCATGAGT	60.005	57.895	0.00	3.41	R
2581	3012	1.705337	GAACACCGATGATGGCACCG	61.705	60.000	0.00	4.94	R
3380	3978	2.548480	GCACCAGTTAAGAGTCGCTTTT	59.452	45.455	38.05	2.27	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	0.389817	CTTGATCTCGCCCGTGTTGA	60.390	55.000	0.00	0.00	0.00	3.18
176	178	5.640158	TTCTTCAGGGTGAAAACCTAGAA	57.360	39.130	0.00	0.00	35.73	2.10
178	180	6.945636	TCTTCAGGGTGAAAACCTAGAATA	57.054	37.500	0.00	0.00	35.73	1.75
182	184	6.827727	TCAGGGTGAAAACCTAGAATATAGC	58.172	40.000	0.00	0.00	36.32	2.97
190	192	9.166222	TGAAAACCTAGAATATAGCCTTGGATA	57.834	33.333	10.18	0.00	0.00	2.59
262	264	1.205657	GCTGTTGAAGAACGTCGTCA	58.794	50.000	0.00	0.00	33.23	4.35
286	288	1.806542	GCGTGGTGTCATGAGATTGTT	59.193	47.619	0.00	0.00	31.73	2.83
299	301	5.101648	TGAGATTGTTGGTGCAGATATGA	57.898	39.130	0.00	0.00	0.00	2.15
420	425	0.179184	GTCGGCGTGTTTTTGTGTGT	60.179	50.000	6.85	0.00	0.00	3.72
500	509	7.814107	TCATTTGTTTGTATCCTTTTGATGCTC	59.186	33.333	0.00	0.00	37.04	4.26
578	587	8.267361	GTCTTGTATGACTTAGCTCTTTGCTGA	61.267	40.741	0.00	0.00	41.75	4.26
632	643	2.057137	AGTGTTGGTTGTGTGCATCT	57.943	45.000	0.00	0.00	0.00	2.90
635	646	4.144297	AGTGTTGGTTGTGTGCATCTTAT	58.856	39.130	0.00	0.00	0.00	1.73
654	665	2.871096	TTTATGCAAAGACCGGGTCT	57.129	45.000	23.90	23.90	45.64	3.85
778	792	3.065786	ACAACTGTAGTCGTCGTCTTCAA	59.934	43.478	0.00	0.00	0.00	2.69
779	793	3.265070	ACTGTAGTCGTCGTCTTCAAC	57.735	47.619	0.00	0.00	0.00	3.18
780	794	2.615447	ACTGTAGTCGTCGTCTTCAACA	59.385	45.455	0.00	0.00	0.00	3.33
781	795	3.065786	ACTGTAGTCGTCGTCTTCAACAA	59.934	43.478	0.00	0.00	0.00	2.83
782	796	4.031418	TGTAGTCGTCGTCTTCAACAAA	57.969	40.909	0.00	0.00	0.00	2.83
822	862	4.992688	TCGTCAGCAAAGTTGTCAATTTT	58.007	34.783	0.48	0.48	0.00	1.82
823	863	4.797868	TCGTCAGCAAAGTTGTCAATTTTG	59.202	37.500	22.56	22.56	40.01	2.44
861	901	0.908910	TAAGGTGGATGTGATGCGGT	59.091	50.000	0.00	0.00	0.00	5.68
922	965	3.053693	TCCAGCTGTATACAGGGCAAAAT	60.054	43.478	29.45	3.38	43.94	1.82
923	966	3.316308	CCAGCTGTATACAGGGCAAAATC	59.684	47.826	29.45	13.31	43.94	2.17
924	967	3.947196	CAGCTGTATACAGGGCAAAATCA	59.053	43.478	29.45	0.00	43.94	2.57
925	968	3.947834	AGCTGTATACAGGGCAAAATCAC	59.052	43.478	29.45	12.05	43.94	3.06
1104	1227	4.961511	GTGCTGGACGCGGTGACA	62.962	66.667	12.47	2.30	43.27	3.58
1125	1248	1.375523	GGTGAAATGCGAGACCCGT	60.376	57.895	0.00	0.00	41.15	5.28
1230	1353	0.749454	GCATGGGCTTCTTCACCGAT	60.749	55.000	0.00	0.00	36.96	4.18
1250	1373	1.139095	CCTACGACCTGTTCTCGGC	59.861	63.158	0.00	0.00	35.37	5.54
1289	1412	0.389391	CTGGGCCACATCTACTACCG	59.611	60.000	0.00	0.00	0.00	4.02
1702	1949	8.049117	TCTCATTCTTAATCTACAACCTGCATT	58.951	33.333	0.00	0.00	0.00	3.56
2173	2548	1.397692	GACGTCGTCTTCTACTCCCTG	59.602	57.143	18.09	0.00	0.00	4.45
2503	2878	3.580319	GGCCCCAACTCCACCACT	61.580	66.667	0.00	0.00	0.00	4.00
2515	2890	0.038744	CCACCACTTTCATCCTGCCT	59.961	55.000	0.00	0.00	0.00	4.75
2533	2908	1.817447	CCTACCGAGATATTCCCGACC	59.183	57.143	0.00	0.00	0.00	4.79
2659	3090	0.768221	TCCTTCTTCTGGCAGGGTGT	60.768	55.000	15.73	0.00	0.00	4.16
2773	3204	4.025040	ACCATCTCAAGAATCTGCAACA	57.975	40.909	0.00	0.00	0.00	3.33
2817	3248	4.355437	CACAGCGTGGAAATTTTGTAACA	58.645	39.130	0.00	0.00	0.00	2.41
3025	3617	4.918273	AGTTTTACCCCTTCCTTTACTCCT	59.082	41.667	0.00	0.00	0.00	3.69
3026	3618	5.013913	AGTTTTACCCCTTCCTTTACTCCTC	59.986	44.000	0.00	0.00	0.00	3.71
3027	3619	1.968278	ACCCCTTCCTTTACTCCTCC	58.032	55.000	0.00	0.00	0.00	4.30
3049	3644	5.773176	TCCTATCCATATTACTTGTCGCTGA	59.227	40.000	0.00	0.00	0.00	4.26
3059	3654	9.982651	ATATTACTTGTCGCTGATTTAGTACAT	57.017	29.630	0.00	0.00	0.00	2.29
3100	3695	2.472695	AAGCAGCGACAAGTAATCCA	57.527	45.000	0.00	0.00	0.00	3.41
3126	3721	7.125391	TCTGTCCCAAAATATAAGGCATTTCT	58.875	34.615	0.00	0.00	0.00	2.52
3154	3752	8.618702	TTTATAACCCTTAAACACATCAACGA	57.381	30.769	0.00	0.00	0.00	3.85
3166	3764	4.221703	ACACATCAACGAAGGAGATCTCTT	59.778	41.667	21.81	12.39	0.00	2.85
3294	3892	3.865684	GCCAACCCAGATGTTGAAATTGG	60.866	47.826	5.53	0.00	46.77	3.16
3380	3978	9.462174	GAACAAACATTCAACTTTACATCATCA	57.538	29.630	0.00	0.00	0.00	3.07
3474	4073	3.359523	CTGCTTGCTTCAGCGCCA	61.360	61.111	2.29	0.00	43.37	5.69
3623	4222	4.025480	GCAATCAAATCGCCCAAATCATTC	60.025	41.667	0.00	0.00	0.00	2.67
3759	4358	3.085952	TGGCCATACTTCTTTCCTTGG	57.914	47.619	0.00	0.00	0.00	3.61
3775	4374	4.090090	TCCTTGGTGTTCCTGAAAACAAA	58.910	39.130	2.82	0.00	40.62	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	0.183014	CACCCCGGAGCTCTAGACTA	59.817	60.000	14.64	0.00	0.00	2.59
67	68	1.112113	ATACTCAACACGGGCGAGAT	58.888	50.000	11.41	0.00	0.00	2.75
82	83	3.388024	ACATCGCCATTGTCAGGTATACT	59.612	43.478	2.25	0.00	0.00	2.12
176	178	4.657969	GGATCCAGCTATCCAAGGCTATAT	59.342	45.833	6.95	0.00	44.26	0.86
178	180	2.843113	GGATCCAGCTATCCAAGGCTAT	59.157	50.000	6.95	0.00	44.26	2.97
182	184	0.322975	CCGGATCCAGCTATCCAAGG	59.677	60.000	13.41	5.86	44.98	3.61
262	264	1.153568	CTCATGACACCACGCGGAT	60.154	57.895	12.47	0.00	35.59	4.18
286	288	8.377799	ACTATAACAATGATCATATCTGCACCA	58.622	33.333	9.04	0.00	0.00	4.17
299	301	7.495606	TCACGATCAGCAAACTATAACAATGAT	59.504	33.333	0.00	0.00	0.00	2.45
358	362	2.159099	CCAAAGCTATGCGTAGGTGAGA	60.159	50.000	17.98	0.00	38.59	3.27
362	366	1.831736	AGACCAAAGCTATGCGTAGGT	59.168	47.619	11.89	11.89	40.24	3.08
420	425	0.675208	ACAGTCAACACCAACGCACA	60.675	50.000	0.00	0.00	0.00	4.57
500	509	7.123247	AGGATGGATTTTATTGACTCAAAGTGG	59.877	37.037	0.00	0.00	0.00	4.00
540	549	6.388278	AGTCATACAAGACCGAAACTCTTAC	58.612	40.000	0.00	0.00	39.34	2.34
541	550	6.585695	AGTCATACAAGACCGAAACTCTTA	57.414	37.500	0.00	0.00	39.34	2.10
542	551	5.470047	AGTCATACAAGACCGAAACTCTT	57.530	39.130	0.00	0.00	39.34	2.85
578	587	3.060138	CGTACACACACAAAGTATTGCGT	60.060	43.478	0.00	0.00	40.34	5.24
581	590	3.465907	CGCGTACACACACAAAGTATTG	58.534	45.455	0.00	0.00	42.46	1.90
585	594	1.639534	GCGCGTACACACACAAAGT	59.360	52.632	8.43	0.00	0.00	2.66
606	617	3.550030	GCACACAACCAACACTAATGGAC	60.550	47.826	0.00	0.00	40.56	4.02
607	618	2.621055	GCACACAACCAACACTAATGGA	59.379	45.455	0.00	0.00	40.56	3.41
632	643	4.850680	AGACCCGGTCTTTGCATAAATAA	58.149	39.130	14.84	0.00	40.28	1.40
635	646	2.304761	AGAGACCCGGTCTTTGCATAAA	59.695	45.455	21.35	0.00	43.53	1.40
654	665	6.768483	TCTCAAGGATACAAACACAATGAGA	58.232	36.000	0.00	0.00	38.63	3.27
778	792	0.604578	TCGCTTAGCCCTACGTTTGT	59.395	50.000	0.00	0.00	0.00	2.83
779	793	1.278238	CTCGCTTAGCCCTACGTTTG	58.722	55.000	0.00	0.00	0.00	2.93
780	794	0.893447	ACTCGCTTAGCCCTACGTTT	59.107	50.000	0.00	0.00	0.00	3.60
781	795	0.893447	AACTCGCTTAGCCCTACGTT	59.107	50.000	0.00	0.00	0.00	3.99
782	796	0.455005	GAACTCGCTTAGCCCTACGT	59.545	55.000	0.00	0.00	0.00	3.57
822	862	3.469008	ACATTCTCCGAAGAACACACA	57.531	42.857	0.00	0.00	44.13	3.72
823	863	4.389077	CCTTACATTCTCCGAAGAACACAC	59.611	45.833	0.00	0.00	44.13	3.82
861	901	2.862674	GATTACGACAGCGCCCCCAA	62.863	60.000	2.29	0.00	42.48	4.12
871	911	3.637694	TCCCGTGGAATATGATTACGACA	59.362	43.478	0.00	0.00	36.94	4.35
872	912	3.985925	GTCCCGTGGAATATGATTACGAC	59.014	47.826	0.00	0.00	36.94	4.34
922	965	7.718525	TGTTTGCCATATATAGAACGTAGTGA	58.281	34.615	0.00	0.00	45.00	3.41
923	966	7.940178	TGTTTGCCATATATAGAACGTAGTG	57.060	36.000	0.00	0.00	45.00	2.74
924	967	8.364894	TCATGTTTGCCATATATAGAACGTAGT	58.635	33.333	0.00	0.00	34.84	2.73
925	968	8.757164	TCATGTTTGCCATATATAGAACGTAG	57.243	34.615	0.00	0.00	30.71	3.51
1104	1227	0.462047	GGGTCTCGCATTTCACCGAT	60.462	55.000	0.00	0.00	32.52	4.18
1131	1254	1.136147	CACCTTGATCTGCTTGCGC	59.864	57.895	0.00	0.00	0.00	6.09
1230	1353	1.592400	CCGAGAACAGGTCGTAGGCA	61.592	60.000	0.00	0.00	35.59	4.75
1250	1373	3.917760	GGTCGGCGATGAGGGAGG	61.918	72.222	14.79	0.00	0.00	4.30
1356	1479	2.204059	AAGAGCTGCCCCAGGACT	60.204	61.111	0.00	0.00	31.21	3.85
1431	1554	1.004560	CGAGCACACCACCATGAGT	60.005	57.895	0.00	0.00	0.00	3.41
1764	2136	1.284785	TCCCAAGACCCTTTATGCAGG	59.715	52.381	0.00	0.00	0.00	4.85
2173	2548	5.096443	AGATGTCCTTCATGAAGAGGTTC	57.904	43.478	32.49	22.38	40.79	3.62
2503	2878	1.860641	TCTCGGTAGGCAGGATGAAA	58.139	50.000	0.00	0.00	39.69	2.69
2515	2890	1.883638	CGGGTCGGGAATATCTCGGTA	60.884	57.143	0.00	0.00	41.53	4.02
2581	3012	1.705337	GAACACCGATGATGGCACCG	61.705	60.000	0.00	0.00	0.00	4.94
2659	3090	3.392947	TGAACATGACTCCAACCAGGTTA	59.607	43.478	3.89	0.00	37.41	2.85
2773	3204	3.817647	GGATGAACTCAACTTCAGCAACT	59.182	43.478	0.19	0.00	38.14	3.16
2817	3248	2.944094	GCAACCGGGATGAATGGTACTT	60.944	50.000	6.32	0.00	34.11	2.24
3025	3617	5.773176	TCAGCGACAAGTAATATGGATAGGA	59.227	40.000	0.00	0.00	0.00	2.94
3026	3618	6.025749	TCAGCGACAAGTAATATGGATAGG	57.974	41.667	0.00	0.00	0.00	2.57
3027	3619	8.539770	AAATCAGCGACAAGTAATATGGATAG	57.460	34.615	0.00	0.00	0.00	2.08
3100	3695	7.786464	AGAAATGCCTTATATTTTGGGACAGAT	59.214	33.333	0.00	0.00	42.39	2.90
3126	3721	8.301002	GTTGATGTGTTTAAGGGTTATAAAGCA	58.699	33.333	0.00	0.00	0.00	3.91
3154	3752	5.787327	AGAAGGGTATGAAGAGATCTCCTT	58.213	41.667	19.30	12.85	0.00	3.36
3294	3892	4.517075	GCTAGGAACTGAATTAGGGAATGC	59.483	45.833	0.00	0.00	41.52	3.56
3380	3978	2.548480	GCACCAGTTAAGAGTCGCTTTT	59.452	45.455	0.00	0.00	38.05	2.27
3474	4073	3.717576	TCATCCTGGAGACTGATTCTGT	58.282	45.455	1.52	0.00	33.22	3.41
3623	4222	2.572290	GGATGGGGTTTCGTAATCAGG	58.428	52.381	0.00	0.00	0.00	3.86
3759	4358	9.522804	TTATTATGTGTTTGTTTTCAGGAACAC	57.477	29.630	10.35	10.35	44.83	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.