Multiple sequence alignment - TraesCS7A01G069300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G069300 chr7A 100.000 4220 0 0 1 4220 35398819 35394600 0.000000e+00 7793
1 TraesCS7A01G069300 chr7D 96.061 2691 74 22 594 3277 35184440 35181775 0.000000e+00 4353
2 TraesCS7A01G069300 chr7D 82.261 637 48 32 3313 3903 35181778 35181161 1.360000e-134 490
3 TraesCS7A01G069300 chr7D 84.681 235 12 8 4 222 35185129 35184903 3.310000e-51 213
4 TraesCS7A01G069300 chr7D 92.500 120 9 0 461 580 35184618 35184499 5.610000e-39 172
5 TraesCS7A01G069300 chr4A 95.535 2710 88 21 583 3277 689846977 689849668 0.000000e+00 4303
6 TraesCS7A01G069300 chr4A 84.370 691 42 28 3313 3955 689849665 689850337 5.990000e-173 617
7 TraesCS7A01G069300 chr4A 82.022 356 16 13 2 320 689846292 689846636 4.190000e-65 259
8 TraesCS7A01G069300 chr4A 100.000 77 0 0 461 537 689846800 689846876 4.400000e-30 143
9 TraesCS7A01G069300 chr5D 97.512 804 20 0 2117 2920 338408935 338409738 0.000000e+00 1375
10 TraesCS7A01G069300 chr5D 97.388 804 21 0 2117 2920 476457089 476456286 0.000000e+00 1369
11 TraesCS7A01G069300 chr5B 96.218 661 25 0 2117 2777 269952234 269951574 0.000000e+00 1083
12 TraesCS7A01G069300 chr5B 92.621 515 35 2 2766 3279 269948154 269947642 0.000000e+00 737
13 TraesCS7A01G069300 chr5B 92.336 274 17 2 3277 3549 269947330 269947060 1.840000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G069300 chr7A 35394600 35398819 4219 True 7793.000000 7793 100.00000 1 4220 1 chr7A.!!$R1 4219
1 TraesCS7A01G069300 chr7D 35181161 35185129 3968 True 1307.000000 4353 88.87575 4 3903 4 chr7D.!!$R1 3899
2 TraesCS7A01G069300 chr4A 689846292 689850337 4045 False 1330.500000 4303 90.48175 2 3955 4 chr4A.!!$F1 3953
3 TraesCS7A01G069300 chr5D 338408935 338409738 803 False 1375.000000 1375 97.51200 2117 2920 1 chr5D.!!$F1 803
4 TraesCS7A01G069300 chr5D 476456286 476457089 803 True 1369.000000 1369 97.38800 2117 2920 1 chr5D.!!$R1 803
5 TraesCS7A01G069300 chr5B 269947060 269952234 5174 True 735.666667 1083 93.72500 2117 3549 3 chr5B.!!$R1 1432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.034896 ATCAAAGAACGTGAGCGGGT 59.965 50.0 0.00 0.0 43.45 5.28 F
146 150 0.171007 GATGCATTCAACCACCACCG 59.829 55.0 0.00 0.0 0.00 4.94 F
451 557 0.331616 AAAAAGGATGACCGGGGGAG 59.668 55.0 6.32 0.0 41.83 4.30 F
545 663 0.883814 CTTCTCCCATCTGCGCATCC 60.884 60.0 12.24 0.0 0.00 3.51 F
844 1006 0.981183 AATCTCAACACCCGCCAGTA 59.019 50.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1235 0.389817 CAGGCATCTCGTCACGGAAA 60.390 55.000 0.00 0.00 0.00 3.13 R
2355 2534 2.491022 ATCGAGCAGGTAGGCGGTC 61.491 63.158 0.00 0.00 39.27 4.79 R
2373 2552 2.954611 CAGTCGTCGGTGAGCTCA 59.045 61.111 13.74 13.74 0.00 4.26 R
2772 6382 3.749064 GTCGGGAGCTCGTGCAGA 61.749 66.667 12.58 0.00 42.74 4.26 R
3220 6830 0.669077 AGAGTATAAGCTCGCCGTGG 59.331 55.000 0.00 0.00 40.26 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.765807 CAGGTCCGATCTGGGGCT 60.766 66.667 0.11 0.00 38.76 5.19
44 45 2.041265 AGGTCCGATCTGGGGCTT 59.959 61.111 4.16 0.00 38.76 4.35
105 106 2.003301 GAGGGATCAAAGAACGTGAGC 58.997 52.381 0.00 0.00 0.00 4.26
109 110 0.034896 ATCAAAGAACGTGAGCGGGT 59.965 50.000 0.00 0.00 43.45 5.28
110 111 0.599204 TCAAAGAACGTGAGCGGGTC 60.599 55.000 0.00 0.00 43.45 4.46
111 112 1.301479 AAAGAACGTGAGCGGGTCC 60.301 57.895 4.54 0.00 43.45 4.46
112 113 3.569049 AAGAACGTGAGCGGGTCCG 62.569 63.158 4.85 4.85 43.45 4.79
146 150 0.171007 GATGCATTCAACCACCACCG 59.829 55.000 0.00 0.00 0.00 4.94
151 155 4.980805 TCAACCACCACCGCTCGC 62.981 66.667 0.00 0.00 0.00 5.03
195 212 2.438795 TCGCAATTAACGGGCCCC 60.439 61.111 18.66 0.00 0.00 5.80
321 382 4.509737 GCACCTACCCCGCTCGTC 62.510 72.222 0.00 0.00 0.00 4.20
366 449 2.030805 GGCAAGTTTTTCATCTCACGCT 60.031 45.455 0.00 0.00 0.00 5.07
367 450 2.975851 GCAAGTTTTTCATCTCACGCTG 59.024 45.455 0.00 0.00 0.00 5.18
404 510 3.090532 GATGACCGGGGGAGGCTT 61.091 66.667 6.32 0.00 33.69 4.35
405 511 3.090532 ATGACCGGGGGAGGCTTC 61.091 66.667 6.32 0.00 33.69 3.86
406 512 3.642741 ATGACCGGGGGAGGCTTCT 62.643 63.158 6.32 0.00 33.69 2.85
408 514 3.986116 GACCGGGGGAGGCTTCTCT 62.986 68.421 6.32 0.00 37.65 3.10
409 515 3.157949 CCGGGGGAGGCTTCTCTC 61.158 72.222 0.00 0.00 37.28 3.20
410 516 2.042435 CGGGGGAGGCTTCTCTCT 60.042 66.667 0.00 0.00 38.09 3.10
411 517 1.687493 CGGGGGAGGCTTCTCTCTT 60.687 63.158 0.00 0.00 38.09 2.85
412 518 1.268283 CGGGGGAGGCTTCTCTCTTT 61.268 60.000 0.00 0.00 38.09 2.52
414 520 1.578897 GGGGAGGCTTCTCTCTTTCT 58.421 55.000 0.00 0.00 38.09 2.52
415 521 1.484653 GGGGAGGCTTCTCTCTTTCTC 59.515 57.143 0.00 0.00 38.09 2.87
416 522 2.466846 GGGAGGCTTCTCTCTTTCTCT 58.533 52.381 0.00 0.00 35.17 3.10
418 524 3.118775 GGGAGGCTTCTCTCTTTCTCTTC 60.119 52.174 0.00 0.00 35.17 2.87
419 525 3.769300 GGAGGCTTCTCTCTTTCTCTTCT 59.231 47.826 0.00 0.00 37.65 2.85
420 526 4.222810 GGAGGCTTCTCTCTTTCTCTTCTT 59.777 45.833 0.00 0.00 37.65 2.52
421 527 5.279960 GGAGGCTTCTCTCTTTCTCTTCTTT 60.280 44.000 0.00 0.00 37.65 2.52
422 528 5.793817 AGGCTTCTCTCTTTCTCTTCTTTC 58.206 41.667 0.00 0.00 0.00 2.62
423 529 5.543790 AGGCTTCTCTCTTTCTCTTCTTTCT 59.456 40.000 0.00 0.00 0.00 2.52
424 530 5.869344 GGCTTCTCTCTTTCTCTTCTTTCTC 59.131 44.000 0.00 0.00 0.00 2.87
425 531 6.295292 GGCTTCTCTCTTTCTCTTCTTTCTCT 60.295 42.308 0.00 0.00 0.00 3.10
427 533 7.523709 GCTTCTCTCTTTCTCTTCTTTCTCTCA 60.524 40.741 0.00 0.00 0.00 3.27
428 534 7.831691 TCTCTCTTTCTCTTCTTTCTCTCAA 57.168 36.000 0.00 0.00 0.00 3.02
429 535 8.243961 TCTCTCTTTCTCTTCTTTCTCTCAAA 57.756 34.615 0.00 0.00 0.00 2.69
431 537 9.323985 CTCTCTTTCTCTTCTTTCTCTCAAAAA 57.676 33.333 0.00 0.00 0.00 1.94
450 556 2.481890 AAAAAGGATGACCGGGGGA 58.518 52.632 6.32 0.00 41.83 4.81
451 557 0.331616 AAAAAGGATGACCGGGGGAG 59.668 55.000 6.32 0.00 41.83 4.30
452 558 1.571773 AAAAGGATGACCGGGGGAGG 61.572 60.000 6.32 0.00 41.83 4.30
455 561 3.551407 GATGACCGGGGGAGGCTC 61.551 72.222 6.32 5.78 33.69 4.70
456 562 4.095400 ATGACCGGGGGAGGCTCT 62.095 66.667 15.23 0.00 33.69 4.09
457 563 4.779733 TGACCGGGGGAGGCTCTC 62.780 72.222 15.23 10.83 33.69 3.20
545 663 0.883814 CTTCTCCCATCTGCGCATCC 60.884 60.000 12.24 0.00 0.00 3.51
557 675 2.190313 GCATCCATCTCCACCGCA 59.810 61.111 0.00 0.00 0.00 5.69
573 691 1.705337 CGCACCACCAATCGATCCAC 61.705 60.000 0.00 0.00 0.00 4.02
832 994 2.752903 TCAGTGATCGTCGGAATCTCAA 59.247 45.455 0.00 0.00 0.00 3.02
838 1000 1.076533 CGTCGGAATCTCAACACCCG 61.077 60.000 0.00 0.00 41.36 5.28
839 1001 1.079405 TCGGAATCTCAACACCCGC 60.079 57.895 0.00 0.00 39.96 6.13
840 1002 2.106683 CGGAATCTCAACACCCGCC 61.107 63.158 0.00 0.00 33.47 6.13
842 1004 1.026718 GGAATCTCAACACCCGCCAG 61.027 60.000 0.00 0.00 0.00 4.85
844 1006 0.981183 AATCTCAACACCCGCCAGTA 59.019 50.000 0.00 0.00 0.00 2.74
854 1016 1.068741 ACCCGCCAGTAGATTTCGATC 59.931 52.381 0.00 0.00 0.00 3.69
857 1019 2.608261 CCGCCAGTAGATTTCGATCCTC 60.608 54.545 0.00 0.00 0.00 3.71
917 1080 1.867166 TCGTCGATCGATCTACAGCT 58.133 50.000 22.50 0.00 44.01 4.24
926 1091 1.999735 CGATCTACAGCTTTTTCGCCA 59.000 47.619 0.00 0.00 0.00 5.69
929 1094 1.871039 TCTACAGCTTTTTCGCCACAC 59.129 47.619 0.00 0.00 0.00 3.82
948 1113 6.563422 CCACACACAATTCTTTTCTTCTTCA 58.437 36.000 0.00 0.00 0.00 3.02
950 1115 7.380602 CCACACACAATTCTTTTCTTCTTCATC 59.619 37.037 0.00 0.00 0.00 2.92
951 1116 7.112565 CACACACAATTCTTTTCTTCTTCATCG 59.887 37.037 0.00 0.00 0.00 3.84
952 1117 6.580041 CACACAATTCTTTTCTTCTTCATCGG 59.420 38.462 0.00 0.00 0.00 4.18
953 1118 6.486657 ACACAATTCTTTTCTTCTTCATCGGA 59.513 34.615 0.00 0.00 0.00 4.55
957 1122 8.457261 CAATTCTTTTCTTCTTCATCGGATTCT 58.543 33.333 0.00 0.00 0.00 2.40
958 1123 6.974932 TCTTTTCTTCTTCATCGGATTCTG 57.025 37.500 0.00 0.00 0.00 3.02
959 1124 6.701340 TCTTTTCTTCTTCATCGGATTCTGA 58.299 36.000 0.00 0.00 0.00 3.27
960 1125 7.334090 TCTTTTCTTCTTCATCGGATTCTGAT 58.666 34.615 1.94 1.94 0.00 2.90
961 1126 7.826252 TCTTTTCTTCTTCATCGGATTCTGATT 59.174 33.333 5.20 0.00 0.00 2.57
962 1127 7.928307 TTTCTTCTTCATCGGATTCTGATTT 57.072 32.000 5.20 0.00 0.00 2.17
963 1128 7.928307 TTCTTCTTCATCGGATTCTGATTTT 57.072 32.000 5.20 0.00 0.00 1.82
964 1129 7.928307 TCTTCTTCATCGGATTCTGATTTTT 57.072 32.000 5.20 0.00 0.00 1.94
1013 1183 4.335315 CCTGACTACAGCACAAAGAAACAA 59.665 41.667 0.00 0.00 42.25 2.83
1065 1235 5.589050 GGATTAGCTTTCTCCGGTTGTTAAT 59.411 40.000 0.00 2.97 0.00 1.40
2022 2201 2.687200 TCCCAGATCCCCACCACG 60.687 66.667 0.00 0.00 0.00 4.94
2025 2204 3.402681 CAGATCCCCACCACGGCT 61.403 66.667 0.00 0.00 0.00 5.52
2355 2534 2.124736 AACATGATGGACCCGGCG 60.125 61.111 0.00 0.00 0.00 6.46
2373 2552 2.442272 ACCGCCTACCTGCTCGAT 60.442 61.111 0.00 0.00 0.00 3.59
2502 2681 1.674057 CGAGCAGTTCAAGGAGGGT 59.326 57.895 0.00 0.00 0.00 4.34
2673 2852 1.303074 CATCATCCCCATCCAGCGG 60.303 63.158 0.00 0.00 0.00 5.52
3222 6832 3.936203 GGGCTCACCGTGTGACCA 61.936 66.667 18.81 0.00 37.67 4.02
3233 6843 2.260434 GTGACCACGGCGAGCTTA 59.740 61.111 16.62 0.00 0.00 3.09
3249 6859 5.391523 GCGAGCTTATACTCTCCTGTATCTG 60.392 48.000 0.00 0.00 35.14 2.90
3286 7210 2.348660 CCGGCGATGTTTACTTTACCA 58.651 47.619 9.30 0.00 0.00 3.25
3291 7215 3.181510 GCGATGTTTACTTTACCAGCCAG 60.182 47.826 0.00 0.00 0.00 4.85
3297 7221 1.237285 ACTTTACCAGCCAGCAAGCG 61.237 55.000 0.00 0.00 38.01 4.68
3325 7249 0.249953 TGCCGGTGTTGTATCGTGTT 60.250 50.000 1.90 0.00 0.00 3.32
3436 7364 2.287103 GTCGGTCCACTGTTTCTTTCAC 59.713 50.000 0.00 0.00 0.00 3.18
3494 7423 7.600065 ACTAGCAGTAGTATGTTTCTTTCGAA 58.400 34.615 0.00 0.00 37.76 3.71
3508 7438 9.453325 TGTTTCTTTCGAATACAATTGTTTACC 57.547 29.630 17.78 4.11 0.00 2.85
3599 7553 4.094887 CCATCCCTGTCGACTGTAATTTTG 59.905 45.833 17.92 7.40 0.00 2.44
3601 7555 4.710324 TCCCTGTCGACTGTAATTTTGTT 58.290 39.130 17.92 0.00 0.00 2.83
3605 7564 6.363473 CCTGTCGACTGTAATTTTGTTTCTC 58.637 40.000 17.92 0.00 0.00 2.87
3606 7565 6.295039 TGTCGACTGTAATTTTGTTTCTCC 57.705 37.500 17.92 0.00 0.00 3.71
3607 7566 5.818336 TGTCGACTGTAATTTTGTTTCTCCA 59.182 36.000 17.92 0.00 0.00 3.86
3618 7577 4.503714 TTGTTTCTCCAAGTTCAGACCT 57.496 40.909 0.00 0.00 0.00 3.85
3631 7590 0.524862 CAGACCTGGAAATGCACAGC 59.475 55.000 0.00 0.00 33.43 4.40
3637 7596 1.738350 CTGGAAATGCACAGCAGAGAG 59.262 52.381 0.00 0.00 43.65 3.20
3647 7606 2.551459 CACAGCAGAGAGGTTCCAAAAG 59.449 50.000 0.00 0.00 0.00 2.27
3657 7620 2.371841 AGGTTCCAAAAGGAAATTGGCC 59.628 45.455 0.00 0.00 45.63 5.36
3677 7640 1.808945 CCTGCTTTCTGTGCGATTCTT 59.191 47.619 0.00 0.00 0.00 2.52
3679 7642 3.486584 CTGCTTTCTGTGCGATTCTTTC 58.513 45.455 0.00 0.00 0.00 2.62
3680 7643 3.141398 TGCTTTCTGTGCGATTCTTTCT 58.859 40.909 0.00 0.00 0.00 2.52
3681 7644 4.314961 TGCTTTCTGTGCGATTCTTTCTA 58.685 39.130 0.00 0.00 0.00 2.10
3686 7649 6.893958 TTCTGTGCGATTCTTTCTAATCTC 57.106 37.500 0.00 0.00 34.34 2.75
3689 7652 6.096141 TCTGTGCGATTCTTTCTAATCTCTCT 59.904 38.462 0.00 0.00 34.34 3.10
3720 7683 0.376502 GGCTGCTTTCGAATCTCTGC 59.623 55.000 0.00 6.88 0.00 4.26
3776 7751 1.269012 CATTTTGTCCCACCCTGCAT 58.731 50.000 0.00 0.00 0.00 3.96
3792 7767 1.410517 TGCATGCACTTTCGGGAAAAA 59.589 42.857 18.46 0.00 0.00 1.94
3799 7774 1.411246 ACTTTCGGGAAAAAGTTGGCC 59.589 47.619 0.00 0.00 44.95 5.36
3806 7781 1.472552 GGAAAAAGTTGGCCGCTTTGT 60.473 47.619 21.06 17.27 36.43 2.83
3808 7783 0.820871 AAAAGTTGGCCGCTTTGTGA 59.179 45.000 21.06 0.00 36.43 3.58
3809 7784 1.039856 AAAGTTGGCCGCTTTGTGAT 58.960 45.000 20.08 0.86 35.16 3.06
3810 7785 1.904287 AAGTTGGCCGCTTTGTGATA 58.096 45.000 6.56 0.00 0.00 2.15
3827 7802 3.673809 GTGATAATATTCTGCGTCGTCCC 59.326 47.826 0.00 0.00 0.00 4.46
3865 7860 4.077188 GCAACACGACGCAGAGGC 62.077 66.667 0.00 0.00 0.00 4.70
3867 7862 2.049063 AACACGACGCAGAGGCTC 60.049 61.111 6.34 6.34 38.10 4.70
3869 7864 1.241990 AACACGACGCAGAGGCTCTA 61.242 55.000 18.26 0.00 38.10 2.43
3870 7865 1.063327 CACGACGCAGAGGCTCTAG 59.937 63.158 18.26 16.34 38.10 2.43
3871 7866 1.078356 ACGACGCAGAGGCTCTAGA 60.078 57.895 18.26 0.00 38.10 2.43
3872 7867 1.092921 ACGACGCAGAGGCTCTAGAG 61.093 60.000 18.26 15.85 38.10 2.43
3899 7897 5.543507 TCTTCTAGATTGGATTCCTGCTC 57.456 43.478 3.95 0.00 0.00 4.26
3900 7898 5.215069 TCTTCTAGATTGGATTCCTGCTCT 58.785 41.667 3.95 5.98 0.00 4.09
3902 7900 2.345124 AGATTGGATTCCTGCTCTGC 57.655 50.000 3.95 0.00 0.00 4.26
3903 7901 1.845143 AGATTGGATTCCTGCTCTGCT 59.155 47.619 3.95 0.00 0.00 4.24
3904 7902 2.158784 AGATTGGATTCCTGCTCTGCTC 60.159 50.000 3.95 0.00 0.00 4.26
3905 7903 0.107993 TTGGATTCCTGCTCTGCTCG 60.108 55.000 3.95 0.00 0.00 5.03
3906 7904 1.886777 GGATTCCTGCTCTGCTCGC 60.887 63.158 0.00 0.00 0.00 5.03
3907 7905 2.202851 ATTCCTGCTCTGCTCGCG 60.203 61.111 0.00 0.00 0.00 5.87
3908 7906 2.897641 GATTCCTGCTCTGCTCGCGT 62.898 60.000 5.77 0.00 0.00 6.01
3909 7907 1.667154 ATTCCTGCTCTGCTCGCGTA 61.667 55.000 5.77 0.00 0.00 4.42
3910 7908 2.543687 TTCCTGCTCTGCTCGCGTAC 62.544 60.000 5.77 0.00 0.00 3.67
3911 7909 2.946597 CTGCTCTGCTCGCGTACG 60.947 66.667 11.84 11.84 42.01 3.67
3912 7910 4.476410 TGCTCTGCTCGCGTACGG 62.476 66.667 18.39 7.41 40.63 4.02
3914 7912 4.554363 CTCTGCTCGCGTACGGGG 62.554 72.222 28.95 20.71 41.32 5.73
3916 7914 4.124351 CTGCTCGCGTACGGGGAA 62.124 66.667 28.95 15.13 40.74 3.97
3917 7915 4.124351 TGCTCGCGTACGGGGAAG 62.124 66.667 28.95 21.23 37.07 3.46
3925 7923 1.180029 CGTACGGGGAAGGAGAAGAA 58.820 55.000 7.57 0.00 0.00 2.52
3941 7939 1.239347 AGAAGAGGCGGCAAAGAAAC 58.761 50.000 13.08 0.00 0.00 2.78
3942 7940 0.110192 GAAGAGGCGGCAAAGAAACG 60.110 55.000 13.08 0.00 0.00 3.60
3944 7942 1.206831 GAGGCGGCAAAGAAACGAC 59.793 57.895 13.08 0.00 35.46 4.34
3945 7943 2.127383 GGCGGCAAAGAAACGACG 60.127 61.111 3.07 0.00 0.00 5.12
3946 7944 2.600475 GGCGGCAAAGAAACGACGA 61.600 57.895 3.07 0.00 0.00 4.20
3947 7945 1.438222 GCGGCAAAGAAACGACGAC 60.438 57.895 0.00 0.00 0.00 4.34
3948 7946 1.154908 CGGCAAAGAAACGACGACG 60.155 57.895 5.58 5.58 45.75 5.12
3949 7947 1.203313 GGCAAAGAAACGACGACGG 59.797 57.895 12.58 0.00 44.46 4.79
3950 7948 1.438222 GCAAAGAAACGACGACGGC 60.438 57.895 12.58 0.00 44.46 5.68
3953 7951 1.493134 AAAGAAACGACGACGGCCAC 61.493 55.000 12.58 0.00 44.46 5.01
3954 7952 2.632136 AAGAAACGACGACGGCCACA 62.632 55.000 12.58 0.00 44.46 4.17
3955 7953 2.935446 GAAACGACGACGGCCACAC 61.935 63.158 12.58 0.00 44.46 3.82
3956 7954 4.955774 AACGACGACGGCCACACC 62.956 66.667 12.58 0.00 44.46 4.16
3959 7957 4.595538 GACGACGGCCACACCACA 62.596 66.667 2.24 0.00 39.03 4.17
3960 7958 3.876589 GACGACGGCCACACCACAT 62.877 63.158 2.24 0.00 39.03 3.21
3961 7959 3.118454 CGACGGCCACACCACATC 61.118 66.667 2.24 0.00 39.03 3.06
3962 7960 2.746277 GACGGCCACACCACATCC 60.746 66.667 2.24 0.00 39.03 3.51
3963 7961 4.344865 ACGGCCACACCACATCCC 62.345 66.667 2.24 0.00 39.03 3.85
3964 7962 4.033776 CGGCCACACCACATCCCT 62.034 66.667 2.24 0.00 39.03 4.20
3965 7963 2.044946 GGCCACACCACATCCCTC 60.045 66.667 0.00 0.00 38.86 4.30
3966 7964 2.044946 GCCACACCACATCCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
3967 7965 2.677228 CCACACCACATCCCTCCC 59.323 66.667 0.00 0.00 0.00 4.30
3968 7966 2.677228 CACACCACATCCCTCCCC 59.323 66.667 0.00 0.00 0.00 4.81
3969 7967 2.209809 ACACCACATCCCTCCCCA 59.790 61.111 0.00 0.00 0.00 4.96
3970 7968 1.925455 ACACCACATCCCTCCCCAG 60.925 63.158 0.00 0.00 0.00 4.45
3971 7969 3.017581 ACCACATCCCTCCCCAGC 61.018 66.667 0.00 0.00 0.00 4.85
3972 7970 3.016971 CCACATCCCTCCCCAGCA 61.017 66.667 0.00 0.00 0.00 4.41
3973 7971 2.593978 CACATCCCTCCCCAGCAG 59.406 66.667 0.00 0.00 0.00 4.24
3974 7972 2.693864 ACATCCCTCCCCAGCAGG 60.694 66.667 0.00 0.00 0.00 4.85
3975 7973 4.201122 CATCCCTCCCCAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
3976 7974 4.765970 ATCCCTCCCCAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
3991 7989 2.033141 GCAGCAGGCCACAAGAGA 59.967 61.111 5.01 0.00 36.11 3.10
3992 7990 1.601759 GCAGCAGGCCACAAGAGAA 60.602 57.895 5.01 0.00 36.11 2.87
3993 7991 1.584380 GCAGCAGGCCACAAGAGAAG 61.584 60.000 5.01 0.00 36.11 2.85
3994 7992 0.035881 CAGCAGGCCACAAGAGAAGA 59.964 55.000 5.01 0.00 0.00 2.87
3995 7993 0.990374 AGCAGGCCACAAGAGAAGAT 59.010 50.000 5.01 0.00 0.00 2.40
3996 7994 1.093159 GCAGGCCACAAGAGAAGATG 58.907 55.000 5.01 0.00 0.00 2.90
3997 7995 1.093159 CAGGCCACAAGAGAAGATGC 58.907 55.000 5.01 0.00 0.00 3.91
3998 7996 0.990374 AGGCCACAAGAGAAGATGCT 59.010 50.000 5.01 0.00 0.00 3.79
3999 7997 1.353694 AGGCCACAAGAGAAGATGCTT 59.646 47.619 5.01 0.00 0.00 3.91
4000 7998 1.742268 GGCCACAAGAGAAGATGCTTC 59.258 52.381 0.00 0.00 0.00 3.86
4001 7999 2.430465 GCCACAAGAGAAGATGCTTCA 58.570 47.619 9.56 0.00 0.00 3.02
4002 8000 2.419324 GCCACAAGAGAAGATGCTTCAG 59.581 50.000 9.56 0.26 0.00 3.02
4003 8001 3.672808 CCACAAGAGAAGATGCTTCAGT 58.327 45.455 9.56 0.79 0.00 3.41
4004 8002 3.683822 CCACAAGAGAAGATGCTTCAGTC 59.316 47.826 9.56 0.00 0.00 3.51
4005 8003 3.683822 CACAAGAGAAGATGCTTCAGTCC 59.316 47.826 9.56 0.00 0.00 3.85
4006 8004 3.326006 ACAAGAGAAGATGCTTCAGTCCA 59.674 43.478 9.56 0.00 0.00 4.02
4007 8005 3.891422 AGAGAAGATGCTTCAGTCCAG 57.109 47.619 9.56 0.00 0.00 3.86
4008 8006 3.172339 AGAGAAGATGCTTCAGTCCAGT 58.828 45.455 9.56 0.00 0.00 4.00
4009 8007 3.195396 AGAGAAGATGCTTCAGTCCAGTC 59.805 47.826 9.56 0.00 0.00 3.51
4010 8008 3.172339 AGAAGATGCTTCAGTCCAGTCT 58.828 45.455 9.56 0.00 0.00 3.24
4011 8009 4.348486 AGAAGATGCTTCAGTCCAGTCTA 58.652 43.478 9.56 0.00 0.00 2.59
4012 8010 4.402155 AGAAGATGCTTCAGTCCAGTCTAG 59.598 45.833 9.56 0.00 0.00 2.43
4013 8011 2.430332 AGATGCTTCAGTCCAGTCTAGC 59.570 50.000 2.07 0.00 0.00 3.42
4014 8012 0.898320 TGCTTCAGTCCAGTCTAGCC 59.102 55.000 0.00 0.00 0.00 3.93
4015 8013 0.898320 GCTTCAGTCCAGTCTAGCCA 59.102 55.000 0.00 0.00 0.00 4.75
4016 8014 1.134848 GCTTCAGTCCAGTCTAGCCAG 60.135 57.143 0.00 0.00 0.00 4.85
4017 8015 0.898320 TTCAGTCCAGTCTAGCCAGC 59.102 55.000 0.00 0.00 0.00 4.85
4018 8016 0.972983 TCAGTCCAGTCTAGCCAGCC 60.973 60.000 0.00 0.00 0.00 4.85
4019 8017 1.079256 AGTCCAGTCTAGCCAGCCA 59.921 57.895 0.00 0.00 0.00 4.75
4020 8018 0.975040 AGTCCAGTCTAGCCAGCCAG 60.975 60.000 0.00 0.00 0.00 4.85
4021 8019 1.079256 TCCAGTCTAGCCAGCCAGT 59.921 57.895 0.00 0.00 0.00 4.00
4022 8020 1.220206 CCAGTCTAGCCAGCCAGTG 59.780 63.158 0.00 0.00 0.00 3.66
4023 8021 1.449246 CAGTCTAGCCAGCCAGTGC 60.449 63.158 0.00 0.00 37.95 4.40
4024 8022 2.510238 GTCTAGCCAGCCAGTGCG 60.510 66.667 0.00 0.00 44.33 5.34
4025 8023 3.774528 TCTAGCCAGCCAGTGCGG 61.775 66.667 0.00 0.00 44.33 5.69
4045 8043 2.360350 CAGCCACATGTCGCCCTT 60.360 61.111 12.11 0.00 0.00 3.95
4046 8044 2.045926 AGCCACATGTCGCCCTTC 60.046 61.111 12.11 0.00 0.00 3.46
4047 8045 3.134127 GCCACATGTCGCCCTTCC 61.134 66.667 3.79 0.00 0.00 3.46
4048 8046 2.671070 CCACATGTCGCCCTTCCT 59.329 61.111 0.00 0.00 0.00 3.36
4049 8047 1.002134 CCACATGTCGCCCTTCCTT 60.002 57.895 0.00 0.00 0.00 3.36
4050 8048 1.026718 CCACATGTCGCCCTTCCTTC 61.027 60.000 0.00 0.00 0.00 3.46
4051 8049 1.079127 ACATGTCGCCCTTCCTTCG 60.079 57.895 0.00 0.00 0.00 3.79
4052 8050 2.125106 ATGTCGCCCTTCCTTCGC 60.125 61.111 0.00 0.00 0.00 4.70
4060 8058 3.788766 CTTCCTTCGCGGCCGTTG 61.789 66.667 28.70 19.94 35.54 4.10
4082 8080 4.570663 CGGGATCGGTGAGCGGAC 62.571 72.222 3.57 0.00 0.00 4.79
4083 8081 4.222847 GGGATCGGTGAGCGGACC 62.223 72.222 3.57 7.97 0.00 4.46
4084 8082 4.222847 GGATCGGTGAGCGGACCC 62.223 72.222 3.57 0.00 31.57 4.46
4085 8083 3.458163 GATCGGTGAGCGGACCCA 61.458 66.667 3.57 0.00 31.57 4.51
4086 8084 3.000819 ATCGGTGAGCGGACCCAA 61.001 61.111 3.57 0.00 31.57 4.12
4087 8085 2.907897 GATCGGTGAGCGGACCCAAG 62.908 65.000 3.57 0.00 31.57 3.61
4088 8086 3.691342 CGGTGAGCGGACCCAAGA 61.691 66.667 0.00 0.00 31.57 3.02
4089 8087 2.990479 GGTGAGCGGACCCAAGAT 59.010 61.111 0.00 0.00 0.00 2.40
4090 8088 1.450312 GGTGAGCGGACCCAAGATG 60.450 63.158 0.00 0.00 0.00 2.90
4091 8089 1.296715 GTGAGCGGACCCAAGATGT 59.703 57.895 0.00 0.00 0.00 3.06
4092 8090 0.741221 GTGAGCGGACCCAAGATGTC 60.741 60.000 0.00 0.00 0.00 3.06
4096 8094 3.721868 GGACCCAAGATGTCCGGA 58.278 61.111 0.00 0.00 42.63 5.14
4097 8095 2.221918 GGACCCAAGATGTCCGGAT 58.778 57.895 7.81 0.00 42.63 4.18
4098 8096 0.106894 GGACCCAAGATGTCCGGATC 59.893 60.000 7.81 1.07 42.63 3.36
4099 8097 1.123928 GACCCAAGATGTCCGGATCT 58.876 55.000 7.81 4.14 33.91 2.75
4100 8098 2.317040 GACCCAAGATGTCCGGATCTA 58.683 52.381 7.81 0.00 32.11 1.98
4101 8099 2.297597 GACCCAAGATGTCCGGATCTAG 59.702 54.545 7.81 2.75 32.11 2.43
4102 8100 2.320781 CCCAAGATGTCCGGATCTAGT 58.679 52.381 7.81 0.00 32.11 2.57
4103 8101 2.297597 CCCAAGATGTCCGGATCTAGTC 59.702 54.545 7.81 1.77 32.11 2.59
4104 8102 2.297597 CCAAGATGTCCGGATCTAGTCC 59.702 54.545 7.81 0.00 44.10 3.85
4114 8112 3.460857 GGATCTAGTCCATCAAACGCT 57.539 47.619 6.51 0.00 46.96 5.07
4115 8113 3.385577 GGATCTAGTCCATCAAACGCTC 58.614 50.000 6.51 0.00 46.96 5.03
4116 8114 3.068873 GGATCTAGTCCATCAAACGCTCT 59.931 47.826 6.51 0.00 46.96 4.09
4117 8115 3.510388 TCTAGTCCATCAAACGCTCTG 57.490 47.619 0.00 0.00 0.00 3.35
4118 8116 3.089284 TCTAGTCCATCAAACGCTCTGA 58.911 45.455 0.00 0.00 0.00 3.27
4119 8117 2.086054 AGTCCATCAAACGCTCTGAC 57.914 50.000 0.00 0.00 0.00 3.51
4120 8118 0.716108 GTCCATCAAACGCTCTGACG 59.284 55.000 0.00 0.00 39.50 4.35
4121 8119 1.014044 TCCATCAAACGCTCTGACGC 61.014 55.000 0.00 0.00 36.19 5.19
4122 8120 1.016130 CCATCAAACGCTCTGACGCT 61.016 55.000 0.00 0.00 36.19 5.07
4123 8121 0.792640 CATCAAACGCTCTGACGCTT 59.207 50.000 0.00 0.00 36.19 4.68
4124 8122 1.992667 CATCAAACGCTCTGACGCTTA 59.007 47.619 0.00 0.00 36.19 3.09
4125 8123 1.415374 TCAAACGCTCTGACGCTTAC 58.585 50.000 0.00 0.00 36.19 2.34
4127 8125 0.039798 AAACGCTCTGACGCTTACGA 60.040 50.000 0.00 0.00 43.93 3.43
4128 8126 0.454620 AACGCTCTGACGCTTACGAG 60.455 55.000 0.00 0.00 43.93 4.18
4129 8127 1.134901 CGCTCTGACGCTTACGAGT 59.865 57.895 0.00 0.00 43.93 4.18
4130 8128 0.454620 CGCTCTGACGCTTACGAGTT 60.455 55.000 0.00 0.00 43.93 3.01
4131 8129 1.699343 GCTCTGACGCTTACGAGTTT 58.301 50.000 0.00 0.00 43.93 2.66
4132 8130 2.059541 GCTCTGACGCTTACGAGTTTT 58.940 47.619 0.00 0.00 43.93 2.43
4133 8131 2.090812 GCTCTGACGCTTACGAGTTTTC 59.909 50.000 0.00 0.00 43.93 2.29
4134 8132 3.566523 CTCTGACGCTTACGAGTTTTCT 58.433 45.455 0.00 0.00 43.93 2.52
4135 8133 3.973657 TCTGACGCTTACGAGTTTTCTT 58.026 40.909 0.00 0.00 43.93 2.52
4136 8134 3.734231 TCTGACGCTTACGAGTTTTCTTG 59.266 43.478 0.00 0.00 43.93 3.02
4137 8135 2.798283 TGACGCTTACGAGTTTTCTTGG 59.202 45.455 0.00 0.00 43.93 3.61
4138 8136 3.054878 GACGCTTACGAGTTTTCTTGGA 58.945 45.455 0.00 0.00 43.93 3.53
4139 8137 3.660865 ACGCTTACGAGTTTTCTTGGAT 58.339 40.909 0.00 0.00 43.93 3.41
4140 8138 4.062991 ACGCTTACGAGTTTTCTTGGATT 58.937 39.130 0.00 0.00 43.93 3.01
4141 8139 4.514066 ACGCTTACGAGTTTTCTTGGATTT 59.486 37.500 0.00 0.00 43.93 2.17
4142 8140 4.846137 CGCTTACGAGTTTTCTTGGATTTG 59.154 41.667 0.00 0.00 43.93 2.32
4143 8141 5.154222 GCTTACGAGTTTTCTTGGATTTGG 58.846 41.667 0.00 0.00 35.70 3.28
4144 8142 5.278315 GCTTACGAGTTTTCTTGGATTTGGT 60.278 40.000 0.00 0.00 35.70 3.67
4145 8143 4.568152 ACGAGTTTTCTTGGATTTGGTG 57.432 40.909 0.00 0.00 35.70 4.17
4146 8144 3.951680 ACGAGTTTTCTTGGATTTGGTGT 59.048 39.130 0.00 0.00 35.70 4.16
4147 8145 4.036380 ACGAGTTTTCTTGGATTTGGTGTC 59.964 41.667 0.00 0.00 35.70 3.67
4148 8146 4.036262 CGAGTTTTCTTGGATTTGGTGTCA 59.964 41.667 0.00 0.00 0.00 3.58
4149 8147 5.449862 CGAGTTTTCTTGGATTTGGTGTCAA 60.450 40.000 0.00 0.00 0.00 3.18
4150 8148 5.906073 AGTTTTCTTGGATTTGGTGTCAAG 58.094 37.500 0.00 0.00 38.26 3.02
4151 8149 5.422012 AGTTTTCTTGGATTTGGTGTCAAGT 59.578 36.000 0.00 0.00 38.13 3.16
4152 8150 5.514274 TTTCTTGGATTTGGTGTCAAGTC 57.486 39.130 0.00 0.00 38.43 3.01
4156 8154 0.521735 GATTTGGTGTCAAGTCCCGC 59.478 55.000 0.00 0.00 34.70 6.13
4157 8155 1.234615 ATTTGGTGTCAAGTCCCGCG 61.235 55.000 0.00 0.00 33.98 6.46
4158 8156 2.313051 TTTGGTGTCAAGTCCCGCGA 62.313 55.000 8.23 0.00 33.98 5.87
4159 8157 2.737376 GGTGTCAAGTCCCGCGAC 60.737 66.667 8.23 0.00 39.50 5.19
4160 8158 2.737376 GTGTCAAGTCCCGCGACC 60.737 66.667 8.23 0.00 40.12 4.79
4161 8159 3.998672 TGTCAAGTCCCGCGACCC 61.999 66.667 8.23 0.00 40.12 4.46
4173 8171 4.889856 CGACCCGGCGATGCATGA 62.890 66.667 9.30 0.00 0.00 3.07
4174 8172 2.513666 GACCCGGCGATGCATGAA 60.514 61.111 9.30 0.00 0.00 2.57
4175 8173 2.823829 GACCCGGCGATGCATGAAC 61.824 63.158 9.30 0.00 0.00 3.18
4176 8174 3.585990 CCCGGCGATGCATGAACC 61.586 66.667 9.30 0.94 0.00 3.62
4177 8175 3.940640 CCGGCGATGCATGAACCG 61.941 66.667 19.65 19.65 43.44 4.44
4178 8176 3.940640 CGGCGATGCATGAACCGG 61.941 66.667 19.10 0.00 40.18 5.28
4179 8177 2.513666 GGCGATGCATGAACCGGA 60.514 61.111 9.46 0.00 0.00 5.14
4180 8178 2.537560 GGCGATGCATGAACCGGAG 61.538 63.158 9.46 0.00 0.00 4.63
4181 8179 1.521457 GCGATGCATGAACCGGAGA 60.521 57.895 9.46 0.00 0.00 3.71
4182 8180 1.089481 GCGATGCATGAACCGGAGAA 61.089 55.000 9.46 0.00 0.00 2.87
4183 8181 1.368641 CGATGCATGAACCGGAGAAA 58.631 50.000 9.46 0.00 0.00 2.52
4184 8182 1.737236 CGATGCATGAACCGGAGAAAA 59.263 47.619 9.46 0.00 0.00 2.29
4185 8183 2.476185 CGATGCATGAACCGGAGAAAAC 60.476 50.000 9.46 0.00 0.00 2.43
4186 8184 2.270352 TGCATGAACCGGAGAAAACT 57.730 45.000 9.46 0.00 0.00 2.66
4187 8185 3.410631 TGCATGAACCGGAGAAAACTA 57.589 42.857 9.46 0.00 0.00 2.24
4188 8186 3.334691 TGCATGAACCGGAGAAAACTAG 58.665 45.455 9.46 0.00 0.00 2.57
4189 8187 2.096013 GCATGAACCGGAGAAAACTAGC 59.904 50.000 9.46 0.00 0.00 3.42
4190 8188 3.334691 CATGAACCGGAGAAAACTAGCA 58.665 45.455 9.46 0.00 0.00 3.49
4191 8189 3.040147 TGAACCGGAGAAAACTAGCAG 57.960 47.619 9.46 0.00 0.00 4.24
4192 8190 1.732809 GAACCGGAGAAAACTAGCAGC 59.267 52.381 9.46 0.00 0.00 5.25
4193 8191 0.977395 ACCGGAGAAAACTAGCAGCT 59.023 50.000 9.46 0.00 0.00 4.24
4194 8192 1.066787 ACCGGAGAAAACTAGCAGCTC 60.067 52.381 9.46 0.00 0.00 4.09
4195 8193 1.066858 CCGGAGAAAACTAGCAGCTCA 60.067 52.381 0.00 0.00 0.00 4.26
4196 8194 2.419297 CCGGAGAAAACTAGCAGCTCAT 60.419 50.000 0.00 0.00 0.00 2.90
4197 8195 2.606725 CGGAGAAAACTAGCAGCTCATG 59.393 50.000 0.00 0.00 0.00 3.07
4198 8196 3.604582 GGAGAAAACTAGCAGCTCATGT 58.395 45.455 0.00 0.00 0.00 3.21
4199 8197 3.373439 GGAGAAAACTAGCAGCTCATGTG 59.627 47.826 0.00 0.00 0.00 3.21
4200 8198 3.341823 AGAAAACTAGCAGCTCATGTGG 58.658 45.455 0.00 0.00 0.00 4.17
4201 8199 3.008375 AGAAAACTAGCAGCTCATGTGGA 59.992 43.478 0.00 0.00 0.00 4.02
4202 8200 3.641434 AAACTAGCAGCTCATGTGGAT 57.359 42.857 0.00 0.00 0.00 3.41
4203 8201 2.616634 ACTAGCAGCTCATGTGGATG 57.383 50.000 0.00 0.00 0.00 3.51
4204 8202 1.836166 ACTAGCAGCTCATGTGGATGT 59.164 47.619 0.00 0.56 0.00 3.06
4205 8203 2.158986 ACTAGCAGCTCATGTGGATGTC 60.159 50.000 0.00 2.60 0.00 3.06
4206 8204 0.616891 AGCAGCTCATGTGGATGTCA 59.383 50.000 0.00 0.00 0.00 3.58
4207 8205 0.731417 GCAGCTCATGTGGATGTCAC 59.269 55.000 8.04 0.00 46.23 3.67
4208 8206 1.678123 GCAGCTCATGTGGATGTCACT 60.678 52.381 8.04 0.00 46.20 3.41
4209 8207 2.277969 CAGCTCATGTGGATGTCACTC 58.722 52.381 0.00 0.00 46.20 3.51
4210 8208 2.093606 CAGCTCATGTGGATGTCACTCT 60.094 50.000 0.00 0.00 46.20 3.24
4211 8209 2.093606 AGCTCATGTGGATGTCACTCTG 60.094 50.000 0.00 0.00 46.20 3.35
4212 8210 2.354503 GCTCATGTGGATGTCACTCTGT 60.355 50.000 0.00 0.00 46.20 3.41
4213 8211 3.519579 CTCATGTGGATGTCACTCTGTC 58.480 50.000 0.00 0.00 46.20 3.51
4214 8212 2.899256 TCATGTGGATGTCACTCTGTCA 59.101 45.455 0.00 0.00 46.20 3.58
4215 8213 3.056322 TCATGTGGATGTCACTCTGTCAG 60.056 47.826 0.00 0.00 46.20 3.51
4216 8214 1.620323 TGTGGATGTCACTCTGTCAGG 59.380 52.381 0.00 0.00 46.20 3.86
4217 8215 0.610174 TGGATGTCACTCTGTCAGGC 59.390 55.000 0.00 0.00 0.00 4.85
4218 8216 0.901124 GGATGTCACTCTGTCAGGCT 59.099 55.000 0.00 0.00 0.00 4.58
4219 8217 1.405256 GGATGTCACTCTGTCAGGCTG 60.405 57.143 8.58 8.58 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.534595 GGCTTTGTATGCGGCTCATTG 60.535 52.381 0.00 0.00 36.63 2.82
6 7 3.887868 CCCGGCTTTGTATGCGGC 61.888 66.667 0.00 0.00 0.00 6.53
113 114 4.899239 CATCCCCGCTCGACCAGC 62.899 72.222 0.00 0.00 45.85 4.85
114 115 4.899239 GCATCCCCGCTCGACCAG 62.899 72.222 0.00 0.00 0.00 4.00
129 130 2.560119 GCGGTGGTGGTTGAATGCA 61.560 57.895 0.00 0.00 0.00 3.96
146 150 1.739562 CTTGACCTGACCTGCGAGC 60.740 63.158 0.00 0.00 0.00 5.03
151 155 0.607489 CCTTGGCTTGACCTGACCTG 60.607 60.000 0.00 0.00 40.22 4.00
195 212 3.931247 TGGTTGGGGTCGTGGACG 61.931 66.667 0.00 0.00 41.45 4.79
207 224 1.079127 CTGGGAGTAGCGGTGGTTG 60.079 63.158 0.00 0.00 0.00 3.77
321 382 2.743928 GTTGAGCCTCGGCAGTGG 60.744 66.667 11.02 0.09 44.88 4.00
329 406 2.815647 CCGCTTCCGTTGAGCCTC 60.816 66.667 0.00 0.00 36.81 4.70
366 449 1.836999 ATCCTAGTGTTGGTGGCGCA 61.837 55.000 10.83 0.00 0.00 6.09
367 450 1.078426 ATCCTAGTGTTGGTGGCGC 60.078 57.895 0.00 0.00 0.00 6.53
380 474 1.152118 CCCCCGGTCATCCATCCTA 60.152 63.158 0.00 0.00 0.00 2.94
404 510 7.831691 TTGAGAGAAAGAAGAGAAAGAGAGA 57.168 36.000 0.00 0.00 0.00 3.10
405 511 8.885494 TTTTGAGAGAAAGAAGAGAAAGAGAG 57.115 34.615 0.00 0.00 0.00 3.20
432 538 0.331616 CTCCCCCGGTCATCCTTTTT 59.668 55.000 0.00 0.00 0.00 1.94
434 540 2.001269 CCTCCCCCGGTCATCCTTT 61.001 63.158 0.00 0.00 0.00 3.11
435 541 2.366972 CCTCCCCCGGTCATCCTT 60.367 66.667 0.00 0.00 0.00 3.36
438 544 3.551407 GAGCCTCCCCCGGTCATC 61.551 72.222 0.00 0.00 0.00 2.92
439 545 4.095400 AGAGCCTCCCCCGGTCAT 62.095 66.667 0.00 0.00 0.00 3.06
440 546 4.779733 GAGAGCCTCCCCCGGTCA 62.780 72.222 0.00 0.00 0.00 4.02
452 558 3.897933 TATAGGAGGCCCGTGGAGAGC 62.898 61.905 0.00 0.00 37.58 4.09
453 559 0.112606 TATAGGAGGCCCGTGGAGAG 59.887 60.000 0.00 0.00 37.58 3.20
454 560 0.559205 TTATAGGAGGCCCGTGGAGA 59.441 55.000 0.00 0.00 37.58 3.71
455 561 1.344763 CTTTATAGGAGGCCCGTGGAG 59.655 57.143 0.00 0.00 37.58 3.86
456 562 1.420430 CTTTATAGGAGGCCCGTGGA 58.580 55.000 0.00 0.00 37.58 4.02
457 563 0.250338 GCTTTATAGGAGGCCCGTGG 60.250 60.000 0.00 0.00 37.58 4.94
458 564 0.250338 GGCTTTATAGGAGGCCCGTG 60.250 60.000 0.00 0.00 38.77 4.94
459 565 1.755393 CGGCTTTATAGGAGGCCCGT 61.755 60.000 0.00 0.00 41.35 5.28
545 663 2.436646 GGTGGTGCGGTGGAGATG 60.437 66.667 0.00 0.00 0.00 2.90
557 675 1.607612 GGGTGGATCGATTGGTGGT 59.392 57.895 0.00 0.00 0.00 4.16
594 746 1.535444 TTCAGTCGGGGCTGGAGAA 60.535 57.895 0.00 0.00 37.12 2.87
595 747 2.119611 TTCAGTCGGGGCTGGAGA 59.880 61.111 0.00 0.00 37.12 3.71
597 749 3.691342 CGTTCAGTCGGGGCTGGA 61.691 66.667 0.00 0.00 37.12 3.86
626 788 3.971702 GGTTGTGGAGGCTGGGCT 61.972 66.667 0.00 0.00 0.00 5.19
832 994 0.108329 CGAAATCTACTGGCGGGTGT 60.108 55.000 0.00 0.00 0.00 4.16
838 1000 3.735237 TGAGGATCGAAATCTACTGGC 57.265 47.619 0.00 0.00 38.61 4.85
839 1001 9.360093 GTAATTATGAGGATCGAAATCTACTGG 57.640 37.037 0.00 0.00 38.61 4.00
844 1006 8.865090 AGTCAGTAATTATGAGGATCGAAATCT 58.135 33.333 0.00 0.00 38.61 2.40
854 1016 6.128007 ACGGCAAAAAGTCAGTAATTATGAGG 60.128 38.462 0.00 0.00 0.00 3.86
857 1019 9.567848 AATTACGGCAAAAAGTCAGTAATTATG 57.432 29.630 8.92 0.00 38.49 1.90
917 1080 3.791973 AGAATTGTGTGTGGCGAAAAA 57.208 38.095 0.00 0.00 0.00 1.94
926 1091 7.134815 CGATGAAGAAGAAAAGAATTGTGTGT 58.865 34.615 0.00 0.00 0.00 3.72
929 1094 6.902341 TCCGATGAAGAAGAAAAGAATTGTG 58.098 36.000 0.00 0.00 0.00 3.33
948 1113 4.191544 TCTGCGAAAAATCAGAATCCGAT 58.808 39.130 0.00 0.00 36.50 4.18
950 1115 4.337763 CTTCTGCGAAAAATCAGAATCCG 58.662 43.478 5.31 0.00 45.09 4.18
951 1116 4.101235 GCTTCTGCGAAAAATCAGAATCC 58.899 43.478 5.31 0.00 45.09 3.01
952 1117 4.726416 TGCTTCTGCGAAAAATCAGAATC 58.274 39.130 5.31 2.78 45.09 2.52
953 1118 4.771590 TGCTTCTGCGAAAAATCAGAAT 57.228 36.364 5.31 0.00 45.09 2.40
957 1122 4.858692 GCTATTTGCTTCTGCGAAAAATCA 59.141 37.500 0.00 0.00 44.77 2.57
958 1123 4.858692 TGCTATTTGCTTCTGCGAAAAATC 59.141 37.500 0.00 0.00 44.77 2.17
959 1124 4.808558 TGCTATTTGCTTCTGCGAAAAAT 58.191 34.783 0.00 6.35 44.77 1.82
960 1125 4.023279 TCTGCTATTTGCTTCTGCGAAAAA 60.023 37.500 0.00 0.00 44.77 1.94
961 1126 3.501828 TCTGCTATTTGCTTCTGCGAAAA 59.498 39.130 0.00 0.00 44.77 2.29
962 1127 3.073678 TCTGCTATTTGCTTCTGCGAAA 58.926 40.909 0.00 0.00 44.77 3.46
963 1128 2.674852 CTCTGCTATTTGCTTCTGCGAA 59.325 45.455 0.00 0.00 45.57 4.70
964 1129 2.094026 TCTCTGCTATTTGCTTCTGCGA 60.094 45.455 0.00 0.00 43.34 5.10
972 1138 5.356470 AGTCAGGAATTTCTCTGCTATTTGC 59.644 40.000 8.98 0.00 43.25 3.68
974 1140 7.624549 TGTAGTCAGGAATTTCTCTGCTATTT 58.375 34.615 8.98 0.00 0.00 1.40
1065 1235 0.389817 CAGGCATCTCGTCACGGAAA 60.390 55.000 0.00 0.00 0.00 3.13
2355 2534 2.491022 ATCGAGCAGGTAGGCGGTC 61.491 63.158 0.00 0.00 39.27 4.79
2373 2552 2.954611 CAGTCGTCGGTGAGCTCA 59.045 61.111 13.74 13.74 0.00 4.26
2772 6382 3.749064 GTCGGGAGCTCGTGCAGA 61.749 66.667 12.58 0.00 42.74 4.26
3220 6830 0.669077 AGAGTATAAGCTCGCCGTGG 59.331 55.000 0.00 0.00 40.26 4.94
3222 6832 0.953003 GGAGAGTATAAGCTCGCCGT 59.047 55.000 0.50 0.00 43.50 5.68
3225 6835 4.698304 AGATACAGGAGAGTATAAGCTCGC 59.302 45.833 0.00 0.00 40.26 5.03
3226 6836 5.703592 ACAGATACAGGAGAGTATAAGCTCG 59.296 44.000 0.00 0.00 40.26 5.03
3227 6837 6.128391 CGACAGATACAGGAGAGTATAAGCTC 60.128 46.154 0.00 0.00 34.95 4.09
3228 6838 5.703592 CGACAGATACAGGAGAGTATAAGCT 59.296 44.000 0.00 0.00 34.95 3.74
3229 6839 5.618195 GCGACAGATACAGGAGAGTATAAGC 60.618 48.000 0.00 0.00 34.95 3.09
3230 6840 5.106475 GGCGACAGATACAGGAGAGTATAAG 60.106 48.000 0.00 0.00 34.95 1.73
3233 6843 3.150767 GGCGACAGATACAGGAGAGTAT 58.849 50.000 0.00 0.00 37.40 2.12
3270 6880 3.181510 GCTGGCTGGTAAAGTAAACATCG 60.182 47.826 0.00 0.00 0.00 3.84
3306 7230 0.249953 AACACGATACAACACCGGCA 60.250 50.000 0.00 0.00 0.00 5.69
3308 7232 2.919229 GAGTAACACGATACAACACCGG 59.081 50.000 0.00 0.00 0.00 5.28
3309 7233 3.567530 TGAGTAACACGATACAACACCG 58.432 45.455 0.00 0.00 0.00 4.94
3311 7235 4.927425 ACCATGAGTAACACGATACAACAC 59.073 41.667 0.00 0.00 0.00 3.32
3313 7237 4.264614 CGACCATGAGTAACACGATACAAC 59.735 45.833 0.00 0.00 0.00 3.32
3314 7238 4.082625 ACGACCATGAGTAACACGATACAA 60.083 41.667 0.00 0.00 0.00 2.41
3315 7239 3.441222 ACGACCATGAGTAACACGATACA 59.559 43.478 0.00 0.00 0.00 2.29
3325 7249 1.306148 CCTCGCTACGACCATGAGTA 58.694 55.000 0.00 0.00 0.00 2.59
3494 7423 5.193099 AGAGCTGGGGTAAACAATTGTAT 57.807 39.130 12.39 0.00 0.00 2.29
3508 7438 1.071605 CGAAGAAACGAAGAGCTGGG 58.928 55.000 0.00 0.00 35.09 4.45
3606 7565 2.886523 TGCATTTCCAGGTCTGAACTTG 59.113 45.455 0.00 0.00 32.50 3.16
3607 7566 2.887152 GTGCATTTCCAGGTCTGAACTT 59.113 45.455 0.00 0.00 0.00 2.66
3618 7577 1.612462 CCTCTCTGCTGTGCATTTCCA 60.612 52.381 0.00 0.00 38.13 3.53
3647 7606 1.066645 CAGAAAGCAGGGCCAATTTCC 60.067 52.381 18.70 6.86 33.16 3.13
3657 7620 1.446907 AGAATCGCACAGAAAGCAGG 58.553 50.000 0.00 0.00 0.00 4.85
3677 7640 5.697178 CACGAGGACGATAGAGAGATTAGAA 59.303 44.000 0.00 0.00 42.66 2.10
3679 7642 4.390603 CCACGAGGACGATAGAGAGATTAG 59.609 50.000 0.00 0.00 42.66 1.73
3680 7643 4.316645 CCACGAGGACGATAGAGAGATTA 58.683 47.826 0.00 0.00 42.66 1.75
3681 7644 3.142951 CCACGAGGACGATAGAGAGATT 58.857 50.000 0.00 0.00 42.66 2.40
3686 7649 0.309302 CAGCCACGAGGACGATAGAG 59.691 60.000 1.86 0.00 42.66 2.43
3689 7652 1.320344 AAGCAGCCACGAGGACGATA 61.320 55.000 1.86 0.00 42.66 2.92
3720 7683 3.441572 GGTTTCCAGATGAGTGGTTGATG 59.558 47.826 0.00 0.00 38.88 3.07
3776 7751 2.159170 CCAACTTTTTCCCGAAAGTGCA 60.159 45.455 4.01 0.00 46.23 4.57
3792 7767 1.904287 TTATCACAAAGCGGCCAACT 58.096 45.000 2.24 0.00 0.00 3.16
3799 7774 5.083136 ACGCAGAATATTATCACAAAGCG 57.917 39.130 8.20 8.20 45.96 4.68
3806 7781 3.305813 GGGGACGACGCAGAATATTATCA 60.306 47.826 4.20 0.00 0.00 2.15
3808 7783 2.631062 TGGGGACGACGCAGAATATTAT 59.369 45.455 4.20 0.00 37.08 1.28
3809 7784 2.033372 TGGGGACGACGCAGAATATTA 58.967 47.619 4.20 0.00 37.08 0.98
3810 7785 0.828022 TGGGGACGACGCAGAATATT 59.172 50.000 4.20 0.00 37.08 1.28
3834 7809 2.751436 TTGCCCTTGCCGAGCATC 60.751 61.111 0.00 0.00 38.76 3.91
3835 7810 3.064324 GTTGCCCTTGCCGAGCAT 61.064 61.111 0.00 0.00 38.76 3.79
3836 7811 4.577677 TGTTGCCCTTGCCGAGCA 62.578 61.111 0.00 0.00 36.47 4.26
3842 7830 4.683334 GCGTCGTGTTGCCCTTGC 62.683 66.667 0.00 0.00 38.26 4.01
3865 7860 5.185635 CCAATCTAGAAGATGGCCTCTAGAG 59.814 48.000 25.32 13.18 42.70 2.43
3867 7862 5.083122 TCCAATCTAGAAGATGGCCTCTAG 58.917 45.833 16.99 16.99 34.65 2.43
3869 7864 3.933886 TCCAATCTAGAAGATGGCCTCT 58.066 45.455 3.32 0.00 34.65 3.69
3870 7865 4.906747 ATCCAATCTAGAAGATGGCCTC 57.093 45.455 3.32 0.00 34.65 4.70
3871 7866 4.042684 GGAATCCAATCTAGAAGATGGCCT 59.957 45.833 3.32 6.76 34.65 5.19
3872 7867 4.042684 AGGAATCCAATCTAGAAGATGGCC 59.957 45.833 14.61 0.00 34.65 5.36
3874 7869 5.002516 GCAGGAATCCAATCTAGAAGATGG 58.997 45.833 13.67 13.67 34.65 3.51
3876 7871 5.845614 AGAGCAGGAATCCAATCTAGAAGAT 59.154 40.000 0.61 0.00 36.28 2.40
3877 7872 5.070180 CAGAGCAGGAATCCAATCTAGAAGA 59.930 44.000 0.61 0.00 0.00 2.87
3878 7873 5.299148 CAGAGCAGGAATCCAATCTAGAAG 58.701 45.833 0.61 0.00 0.00 2.85
3879 7874 4.444022 GCAGAGCAGGAATCCAATCTAGAA 60.444 45.833 0.61 0.00 0.00 2.10
3899 7897 4.124351 TTCCCCGTACGCGAGCAG 62.124 66.667 15.93 0.20 41.33 4.24
3900 7898 4.124351 CTTCCCCGTACGCGAGCA 62.124 66.667 15.93 0.00 41.33 4.26
3902 7900 3.122250 CTCCTTCCCCGTACGCGAG 62.122 68.421 15.93 3.16 41.33 5.03
3903 7901 3.136123 CTCCTTCCCCGTACGCGA 61.136 66.667 15.93 4.33 41.33 5.87
3904 7902 2.609183 CTTCTCCTTCCCCGTACGCG 62.609 65.000 10.49 3.53 37.95 6.01
3905 7903 1.141234 CTTCTCCTTCCCCGTACGC 59.859 63.158 10.49 0.00 0.00 4.42
3906 7904 1.134560 CTTCTTCTCCTTCCCCGTACG 59.865 57.143 8.69 8.69 0.00 3.67
3907 7905 2.427812 CTCTTCTTCTCCTTCCCCGTAC 59.572 54.545 0.00 0.00 0.00 3.67
3908 7906 2.623502 CCTCTTCTTCTCCTTCCCCGTA 60.624 54.545 0.00 0.00 0.00 4.02
3909 7907 1.562783 CTCTTCTTCTCCTTCCCCGT 58.437 55.000 0.00 0.00 0.00 5.28
3910 7908 0.827368 CCTCTTCTTCTCCTTCCCCG 59.173 60.000 0.00 0.00 0.00 5.73
3911 7909 0.544223 GCCTCTTCTTCTCCTTCCCC 59.456 60.000 0.00 0.00 0.00 4.81
3912 7910 0.176910 CGCCTCTTCTTCTCCTTCCC 59.823 60.000 0.00 0.00 0.00 3.97
3913 7911 0.176910 CCGCCTCTTCTTCTCCTTCC 59.823 60.000 0.00 0.00 0.00 3.46
3914 7912 0.461163 GCCGCCTCTTCTTCTCCTTC 60.461 60.000 0.00 0.00 0.00 3.46
3915 7913 1.194781 TGCCGCCTCTTCTTCTCCTT 61.195 55.000 0.00 0.00 0.00 3.36
3916 7914 1.194781 TTGCCGCCTCTTCTTCTCCT 61.195 55.000 0.00 0.00 0.00 3.69
3917 7915 0.321653 TTTGCCGCCTCTTCTTCTCC 60.322 55.000 0.00 0.00 0.00 3.71
3925 7923 1.070786 TCGTTTCTTTGCCGCCTCT 59.929 52.632 0.00 0.00 0.00 3.69
3942 7940 3.876589 ATGTGGTGTGGCCGTCGTC 62.877 63.158 0.00 0.00 41.21 4.20
3944 7942 3.118454 GATGTGGTGTGGCCGTCG 61.118 66.667 0.00 0.00 41.21 5.12
3945 7943 2.746277 GGATGTGGTGTGGCCGTC 60.746 66.667 0.00 0.00 41.21 4.79
3946 7944 4.344865 GGGATGTGGTGTGGCCGT 62.345 66.667 0.00 0.00 41.21 5.68
3947 7945 3.976701 GAGGGATGTGGTGTGGCCG 62.977 68.421 0.00 0.00 41.21 6.13
3948 7946 2.044946 GAGGGATGTGGTGTGGCC 60.045 66.667 0.00 0.00 37.90 5.36
3949 7947 2.044946 GGAGGGATGTGGTGTGGC 60.045 66.667 0.00 0.00 0.00 5.01
3950 7948 2.677228 GGGAGGGATGTGGTGTGG 59.323 66.667 0.00 0.00 0.00 4.17
3953 7951 3.001514 CTGGGGAGGGATGTGGTG 58.998 66.667 0.00 0.00 0.00 4.17
3954 7952 3.017581 GCTGGGGAGGGATGTGGT 61.018 66.667 0.00 0.00 0.00 4.16
3955 7953 3.016971 TGCTGGGGAGGGATGTGG 61.017 66.667 0.00 0.00 0.00 4.17
3956 7954 2.593978 CTGCTGGGGAGGGATGTG 59.406 66.667 0.00 0.00 0.00 3.21
3957 7955 2.693864 CCTGCTGGGGAGGGATGT 60.694 66.667 0.71 0.00 0.00 3.06
3958 7956 4.201122 GCCTGCTGGGGAGGGATG 62.201 72.222 12.06 0.00 35.12 3.51
3959 7957 4.765970 TGCCTGCTGGGGAGGGAT 62.766 66.667 12.06 0.00 35.12 3.85
3974 7972 1.584380 CTTCTCTTGTGGCCTGCTGC 61.584 60.000 3.32 0.00 40.16 5.25
3975 7973 0.035881 TCTTCTCTTGTGGCCTGCTG 59.964 55.000 3.32 0.00 0.00 4.41
3976 7974 0.990374 ATCTTCTCTTGTGGCCTGCT 59.010 50.000 3.32 0.00 0.00 4.24
3977 7975 1.093159 CATCTTCTCTTGTGGCCTGC 58.907 55.000 3.32 0.00 0.00 4.85
3978 7976 1.093159 GCATCTTCTCTTGTGGCCTG 58.907 55.000 3.32 0.00 0.00 4.85
3979 7977 0.990374 AGCATCTTCTCTTGTGGCCT 59.010 50.000 3.32 0.00 0.00 5.19
3980 7978 1.742268 GAAGCATCTTCTCTTGTGGCC 59.258 52.381 0.00 0.00 0.00 5.36
3981 7979 2.419324 CTGAAGCATCTTCTCTTGTGGC 59.581 50.000 7.91 0.00 0.00 5.01
3982 7980 3.672808 ACTGAAGCATCTTCTCTTGTGG 58.327 45.455 7.91 0.00 0.00 4.17
3983 7981 3.683822 GGACTGAAGCATCTTCTCTTGTG 59.316 47.826 7.91 0.00 0.00 3.33
3984 7982 3.326006 TGGACTGAAGCATCTTCTCTTGT 59.674 43.478 7.91 2.76 0.00 3.16
3985 7983 3.933955 CTGGACTGAAGCATCTTCTCTTG 59.066 47.826 7.91 0.16 0.00 3.02
3986 7984 3.582208 ACTGGACTGAAGCATCTTCTCTT 59.418 43.478 7.91 0.00 0.00 2.85
3987 7985 3.172339 ACTGGACTGAAGCATCTTCTCT 58.828 45.455 7.91 0.00 0.00 3.10
3988 7986 3.195396 AGACTGGACTGAAGCATCTTCTC 59.805 47.826 7.91 0.00 0.00 2.87
3989 7987 3.172339 AGACTGGACTGAAGCATCTTCT 58.828 45.455 7.91 0.00 0.00 2.85
3990 7988 3.608316 AGACTGGACTGAAGCATCTTC 57.392 47.619 0.00 0.00 0.00 2.87
3991 7989 3.118811 GCTAGACTGGACTGAAGCATCTT 60.119 47.826 0.00 0.00 0.00 2.40
3992 7990 2.430332 GCTAGACTGGACTGAAGCATCT 59.570 50.000 0.00 0.00 0.00 2.90
3993 7991 2.482839 GGCTAGACTGGACTGAAGCATC 60.483 54.545 0.00 0.00 0.00 3.91
3994 7992 1.484240 GGCTAGACTGGACTGAAGCAT 59.516 52.381 0.00 0.00 0.00 3.79
3995 7993 0.898320 GGCTAGACTGGACTGAAGCA 59.102 55.000 0.00 0.00 0.00 3.91
3996 7994 0.898320 TGGCTAGACTGGACTGAAGC 59.102 55.000 0.00 0.00 0.00 3.86
3997 7995 1.134848 GCTGGCTAGACTGGACTGAAG 60.135 57.143 0.00 0.00 0.00 3.02
3998 7996 0.898320 GCTGGCTAGACTGGACTGAA 59.102 55.000 0.00 0.00 0.00 3.02
3999 7997 0.972983 GGCTGGCTAGACTGGACTGA 60.973 60.000 0.00 0.00 0.00 3.41
4000 7998 1.260538 TGGCTGGCTAGACTGGACTG 61.261 60.000 3.91 0.00 31.21 3.51
4001 7999 0.975040 CTGGCTGGCTAGACTGGACT 60.975 60.000 3.91 0.00 31.21 3.85
4002 8000 1.261238 ACTGGCTGGCTAGACTGGAC 61.261 60.000 14.34 0.00 35.34 4.02
4003 8001 1.079256 ACTGGCTGGCTAGACTGGA 59.921 57.895 14.34 0.00 35.34 3.86
4004 8002 1.220206 CACTGGCTGGCTAGACTGG 59.780 63.158 14.34 4.97 35.34 4.00
4005 8003 1.449246 GCACTGGCTGGCTAGACTG 60.449 63.158 12.65 8.34 36.97 3.51
4006 8004 2.985456 GCACTGGCTGGCTAGACT 59.015 61.111 12.65 0.00 36.96 3.24
4007 8005 2.510238 CGCACTGGCTGGCTAGAC 60.510 66.667 12.65 0.00 38.10 2.59
4008 8006 3.774528 CCGCACTGGCTGGCTAGA 61.775 66.667 12.65 0.00 38.10 2.43
4028 8026 2.360350 AAGGGCGACATGTGGCTG 60.360 61.111 28.49 6.24 34.59 4.85
4029 8027 2.045926 GAAGGGCGACATGTGGCT 60.046 61.111 28.49 12.33 34.59 4.75
4030 8028 3.134127 GGAAGGGCGACATGTGGC 61.134 66.667 23.14 23.14 0.00 5.01
4031 8029 1.002134 AAGGAAGGGCGACATGTGG 60.002 57.895 1.15 2.26 0.00 4.17
4032 8030 1.361668 CGAAGGAAGGGCGACATGTG 61.362 60.000 1.15 0.00 0.00 3.21
4033 8031 1.079127 CGAAGGAAGGGCGACATGT 60.079 57.895 0.00 0.00 0.00 3.21
4034 8032 2.464459 GCGAAGGAAGGGCGACATG 61.464 63.158 0.00 0.00 0.00 3.21
4035 8033 2.125106 GCGAAGGAAGGGCGACAT 60.125 61.111 0.00 0.00 0.00 3.06
4043 8041 3.788766 CAACGGCCGCGAAGGAAG 61.789 66.667 28.58 1.90 45.00 3.46
4065 8063 4.570663 GTCCGCTCACCGATCCCG 62.571 72.222 0.00 0.00 40.02 5.14
4066 8064 4.222847 GGTCCGCTCACCGATCCC 62.223 72.222 0.00 0.00 40.02 3.85
4067 8065 4.222847 GGGTCCGCTCACCGATCC 62.223 72.222 0.00 0.00 40.02 3.36
4068 8066 2.907897 CTTGGGTCCGCTCACCGATC 62.908 65.000 0.00 0.00 40.02 3.69
4069 8067 3.000819 TTGGGTCCGCTCACCGAT 61.001 61.111 0.00 0.00 40.02 4.18
4070 8068 3.691342 CTTGGGTCCGCTCACCGA 61.691 66.667 0.00 0.00 40.02 4.69
4071 8069 3.019003 ATCTTGGGTCCGCTCACCG 62.019 63.158 0.00 0.00 37.30 4.94
4072 8070 1.450312 CATCTTGGGTCCGCTCACC 60.450 63.158 0.00 0.00 35.42 4.02
4073 8071 0.741221 GACATCTTGGGTCCGCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
4074 8072 1.596934 GACATCTTGGGTCCGCTCA 59.403 57.895 0.00 0.00 0.00 4.26
4075 8073 1.153349 GGACATCTTGGGTCCGCTC 60.153 63.158 0.00 0.00 44.80 5.03
4076 8074 2.990479 GGACATCTTGGGTCCGCT 59.010 61.111 0.00 0.00 44.80 5.52
4080 8078 1.123928 AGATCCGGACATCTTGGGTC 58.876 55.000 6.12 0.00 32.87 4.46
4081 8079 2.320781 CTAGATCCGGACATCTTGGGT 58.679 52.381 6.12 0.00 34.75 4.51
4082 8080 2.297597 GACTAGATCCGGACATCTTGGG 59.702 54.545 6.12 3.77 34.75 4.12
4083 8081 2.297597 GGACTAGATCCGGACATCTTGG 59.702 54.545 6.12 6.27 37.88 3.61
4084 8082 3.651803 GGACTAGATCCGGACATCTTG 57.348 52.381 6.12 10.75 37.88 3.02
4095 8093 4.047822 CAGAGCGTTTGATGGACTAGATC 58.952 47.826 0.00 0.00 0.00 2.75
4096 8094 3.701542 TCAGAGCGTTTGATGGACTAGAT 59.298 43.478 0.00 0.00 0.00 1.98
4097 8095 3.089284 TCAGAGCGTTTGATGGACTAGA 58.911 45.455 0.00 0.00 0.00 2.43
4098 8096 3.182967 GTCAGAGCGTTTGATGGACTAG 58.817 50.000 0.00 0.00 0.00 2.57
4099 8097 2.415491 CGTCAGAGCGTTTGATGGACTA 60.415 50.000 0.00 0.00 0.00 2.59
4100 8098 1.670087 CGTCAGAGCGTTTGATGGACT 60.670 52.381 0.00 0.00 0.00 3.85
4101 8099 0.716108 CGTCAGAGCGTTTGATGGAC 59.284 55.000 0.00 0.00 0.00 4.02
4102 8100 1.014044 GCGTCAGAGCGTTTGATGGA 61.014 55.000 8.68 0.00 33.24 3.41
4103 8101 1.016130 AGCGTCAGAGCGTTTGATGG 61.016 55.000 8.68 0.00 43.00 3.51
4104 8102 0.792640 AAGCGTCAGAGCGTTTGATG 59.207 50.000 3.82 3.82 43.00 3.07
4105 8103 1.993370 GTAAGCGTCAGAGCGTTTGAT 59.007 47.619 0.00 0.00 43.00 2.57
4106 8104 1.415374 GTAAGCGTCAGAGCGTTTGA 58.585 50.000 0.00 0.00 43.00 2.69
4107 8105 0.091344 CGTAAGCGTCAGAGCGTTTG 59.909 55.000 0.00 0.00 43.00 2.93
4108 8106 0.039798 TCGTAAGCGTCAGAGCGTTT 60.040 50.000 0.00 0.00 43.00 3.60
4109 8107 0.454620 CTCGTAAGCGTCAGAGCGTT 60.455 55.000 0.00 0.00 43.00 4.84
4110 8108 1.134901 CTCGTAAGCGTCAGAGCGT 59.865 57.895 0.00 0.00 43.00 5.07
4111 8109 0.454620 AACTCGTAAGCGTCAGAGCG 60.455 55.000 4.65 0.00 43.00 5.03
4112 8110 1.699343 AAACTCGTAAGCGTCAGAGC 58.301 50.000 4.65 0.00 39.49 4.09
4113 8111 3.566523 AGAAAACTCGTAAGCGTCAGAG 58.433 45.455 3.47 3.47 39.49 3.35
4114 8112 3.637998 AGAAAACTCGTAAGCGTCAGA 57.362 42.857 0.00 0.00 39.49 3.27
4115 8113 3.120991 CCAAGAAAACTCGTAAGCGTCAG 60.121 47.826 0.00 0.00 39.49 3.51
4116 8114 2.798283 CCAAGAAAACTCGTAAGCGTCA 59.202 45.455 0.00 0.00 39.49 4.35
4117 8115 3.054878 TCCAAGAAAACTCGTAAGCGTC 58.945 45.455 0.00 0.00 39.49 5.19
4118 8116 3.102052 TCCAAGAAAACTCGTAAGCGT 57.898 42.857 0.00 0.00 39.49 5.07
4119 8117 4.663636 AATCCAAGAAAACTCGTAAGCG 57.336 40.909 0.00 0.00 39.92 4.68
4120 8118 5.154222 CCAAATCCAAGAAAACTCGTAAGC 58.846 41.667 0.00 0.00 37.18 3.09
4121 8119 6.142817 CACCAAATCCAAGAAAACTCGTAAG 58.857 40.000 0.00 0.00 0.00 2.34
4122 8120 5.591067 ACACCAAATCCAAGAAAACTCGTAA 59.409 36.000 0.00 0.00 0.00 3.18
4123 8121 5.127491 ACACCAAATCCAAGAAAACTCGTA 58.873 37.500 0.00 0.00 0.00 3.43
4124 8122 3.951680 ACACCAAATCCAAGAAAACTCGT 59.048 39.130 0.00 0.00 0.00 4.18
4125 8123 4.036262 TGACACCAAATCCAAGAAAACTCG 59.964 41.667 0.00 0.00 0.00 4.18
4126 8124 5.514274 TGACACCAAATCCAAGAAAACTC 57.486 39.130 0.00 0.00 0.00 3.01
4127 8125 5.422012 ACTTGACACCAAATCCAAGAAAACT 59.578 36.000 0.00 0.00 39.28 2.66
4128 8126 5.660460 ACTTGACACCAAATCCAAGAAAAC 58.340 37.500 0.00 0.00 39.28 2.43
4129 8127 5.163457 GGACTTGACACCAAATCCAAGAAAA 60.163 40.000 0.00 0.00 45.37 2.29
4130 8128 4.340950 GGACTTGACACCAAATCCAAGAAA 59.659 41.667 0.00 0.00 45.37 2.52
4131 8129 3.888930 GGACTTGACACCAAATCCAAGAA 59.111 43.478 0.00 0.00 45.37 2.52
4132 8130 3.486383 GGACTTGACACCAAATCCAAGA 58.514 45.455 0.00 0.00 45.37 3.02
4133 8131 3.923017 GGACTTGACACCAAATCCAAG 57.077 47.619 1.33 0.00 45.37 3.61
4136 8134 1.165270 CGGGACTTGACACCAAATCC 58.835 55.000 0.00 0.00 45.33 3.01
4137 8135 0.521735 GCGGGACTTGACACCAAATC 59.478 55.000 0.00 0.00 0.00 2.17
4138 8136 1.234615 CGCGGGACTTGACACCAAAT 61.235 55.000 0.00 0.00 0.00 2.32
4139 8137 1.890041 CGCGGGACTTGACACCAAA 60.890 57.895 0.00 0.00 0.00 3.28
4140 8138 2.280524 CGCGGGACTTGACACCAA 60.281 61.111 0.00 0.00 0.00 3.67
4141 8139 3.228017 TCGCGGGACTTGACACCA 61.228 61.111 6.13 0.00 0.00 4.17
4142 8140 2.737376 GTCGCGGGACTTGACACC 60.737 66.667 23.96 0.00 40.15 4.16
4143 8141 2.737376 GGTCGCGGGACTTGACAC 60.737 66.667 28.74 10.16 42.97 3.67
4144 8142 3.998672 GGGTCGCGGGACTTGACA 61.999 66.667 28.74 0.00 42.97 3.58
4156 8154 4.889856 TCATGCATCGCCGGGTCG 62.890 66.667 2.18 0.00 0.00 4.79
4157 8155 2.513666 TTCATGCATCGCCGGGTC 60.514 61.111 2.18 0.00 0.00 4.46
4158 8156 2.824041 GTTCATGCATCGCCGGGT 60.824 61.111 2.18 0.00 0.00 5.28
4159 8157 3.585990 GGTTCATGCATCGCCGGG 61.586 66.667 2.18 0.00 0.00 5.73
4160 8158 3.940640 CGGTTCATGCATCGCCGG 61.941 66.667 19.56 0.00 38.86 6.13
4161 8159 3.940640 CCGGTTCATGCATCGCCG 61.941 66.667 20.09 20.09 41.82 6.46
4162 8160 2.513666 TCCGGTTCATGCATCGCC 60.514 61.111 0.00 0.00 0.00 5.54
4163 8161 1.089481 TTCTCCGGTTCATGCATCGC 61.089 55.000 0.00 0.00 0.00 4.58
4164 8162 1.368641 TTTCTCCGGTTCATGCATCG 58.631 50.000 0.00 0.00 0.00 3.84
4165 8163 2.749621 AGTTTTCTCCGGTTCATGCATC 59.250 45.455 0.00 0.00 0.00 3.91
4166 8164 2.795329 AGTTTTCTCCGGTTCATGCAT 58.205 42.857 0.00 0.00 0.00 3.96
4167 8165 2.270352 AGTTTTCTCCGGTTCATGCA 57.730 45.000 0.00 0.00 0.00 3.96
4168 8166 2.096013 GCTAGTTTTCTCCGGTTCATGC 59.904 50.000 0.00 0.00 0.00 4.06
4169 8167 3.334691 TGCTAGTTTTCTCCGGTTCATG 58.665 45.455 0.00 0.00 0.00 3.07
4170 8168 3.600388 CTGCTAGTTTTCTCCGGTTCAT 58.400 45.455 0.00 0.00 0.00 2.57
4171 8169 2.870435 GCTGCTAGTTTTCTCCGGTTCA 60.870 50.000 0.00 0.00 0.00 3.18
4172 8170 1.732809 GCTGCTAGTTTTCTCCGGTTC 59.267 52.381 0.00 0.00 0.00 3.62
4173 8171 1.348036 AGCTGCTAGTTTTCTCCGGTT 59.652 47.619 0.00 0.00 0.00 4.44
4174 8172 0.977395 AGCTGCTAGTTTTCTCCGGT 59.023 50.000 0.00 0.00 0.00 5.28
4175 8173 1.066858 TGAGCTGCTAGTTTTCTCCGG 60.067 52.381 0.15 0.00 0.00 5.14
4176 8174 2.370281 TGAGCTGCTAGTTTTCTCCG 57.630 50.000 0.15 0.00 0.00 4.63
4177 8175 3.373439 CACATGAGCTGCTAGTTTTCTCC 59.627 47.826 0.15 0.00 0.00 3.71
4178 8176 3.373439 CCACATGAGCTGCTAGTTTTCTC 59.627 47.826 0.15 0.00 0.00 2.87
4179 8177 3.008375 TCCACATGAGCTGCTAGTTTTCT 59.992 43.478 0.15 0.00 0.00 2.52
4180 8178 3.338249 TCCACATGAGCTGCTAGTTTTC 58.662 45.455 0.15 0.00 0.00 2.29
4181 8179 3.423539 TCCACATGAGCTGCTAGTTTT 57.576 42.857 0.15 0.00 0.00 2.43
4182 8180 3.276857 CATCCACATGAGCTGCTAGTTT 58.723 45.455 0.15 0.00 30.57 2.66
4183 8181 2.238144 ACATCCACATGAGCTGCTAGTT 59.762 45.455 0.15 0.00 33.72 2.24
4184 8182 1.836166 ACATCCACATGAGCTGCTAGT 59.164 47.619 0.15 0.00 33.72 2.57
4185 8183 2.159000 TGACATCCACATGAGCTGCTAG 60.159 50.000 0.15 0.00 33.72 3.42
4186 8184 1.832998 TGACATCCACATGAGCTGCTA 59.167 47.619 0.15 0.00 33.72 3.49
4187 8185 0.616891 TGACATCCACATGAGCTGCT 59.383 50.000 0.00 0.00 33.72 4.24
4188 8186 0.731417 GTGACATCCACATGAGCTGC 59.269 55.000 0.00 0.00 45.03 5.25
4197 8195 1.674221 GCCTGACAGAGTGACATCCAC 60.674 57.143 3.32 0.00 46.03 4.02
4198 8196 0.610174 GCCTGACAGAGTGACATCCA 59.390 55.000 3.32 0.00 0.00 3.41
4199 8197 0.901124 AGCCTGACAGAGTGACATCC 59.099 55.000 3.32 0.00 0.00 3.51
4200 8198 2.007360 CAGCCTGACAGAGTGACATC 57.993 55.000 3.32 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.