Multiple sequence alignment - TraesCS7A01G069100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G069100 chr7A 100.000 3850 0 0 1 3850 35179736 35175887 0.000000e+00 7110.0
1 TraesCS7A01G069100 chr7A 90.439 387 33 2 3465 3850 29709094 29708711 1.230000e-139 507.0
2 TraesCS7A01G069100 chr7A 76.866 670 85 48 1206 1816 29653072 29653730 8.030000e-82 315.0
3 TraesCS7A01G069100 chr7D 89.613 2195 117 40 1260 3381 34988672 34990828 0.000000e+00 2687.0
4 TraesCS7A01G069100 chr7D 91.285 677 32 12 512 1177 34987202 34987862 0.000000e+00 898.0
5 TraesCS7A01G069100 chr7D 94.981 518 23 3 1 517 254982432 254982947 0.000000e+00 809.0
6 TraesCS7A01G069100 chr7D 93.005 386 21 4 3467 3850 76713949 76713568 3.360000e-155 558.0
7 TraesCS7A01G069100 chr7D 89.922 387 36 3 3465 3850 584608869 584608485 2.670000e-136 496.0
8 TraesCS7A01G069100 chr7D 79.803 203 28 9 1575 1769 6568749 6568946 6.710000e-28 135.0
9 TraesCS7A01G069100 chr7D 80.380 158 22 6 1661 1812 104088365 104088519 1.130000e-20 111.0
10 TraesCS7A01G069100 chr1D 95.229 524 17 6 1 517 58117165 58116643 0.000000e+00 822.0
11 TraesCS7A01G069100 chr1D 94.626 521 23 4 1 518 96912160 96912678 0.000000e+00 802.0
12 TraesCS7A01G069100 chr1D 82.564 390 58 10 3465 3850 471944563 471944180 6.160000e-88 335.0
13 TraesCS7A01G069100 chr1D 83.401 247 38 3 3465 3710 180150908 180151152 3.870000e-55 226.0
14 TraesCS7A01G069100 chr1D 81.887 265 43 5 3465 3728 425528305 425528565 6.480000e-53 219.0
15 TraesCS7A01G069100 chr1D 78.125 352 67 9 3465 3808 6670114 6669765 8.380000e-52 215.0
16 TraesCS7A01G069100 chr1D 76.396 394 74 16 3464 3849 127170833 127170451 1.090000e-45 195.0
17 TraesCS7A01G069100 chr2D 95.164 517 20 4 1 516 538595749 538595237 0.000000e+00 811.0
18 TraesCS7A01G069100 chr2D 95.116 389 15 4 3463 3850 569683904 569683519 9.140000e-171 610.0
19 TraesCS7A01G069100 chr5A 94.412 519 25 2 1 517 156854806 156855322 0.000000e+00 795.0
20 TraesCS7A01G069100 chr3A 94.402 518 24 3 1 516 591736683 591737197 0.000000e+00 791.0
21 TraesCS7A01G069100 chr3A 94.220 519 24 5 1 516 663793755 663794270 0.000000e+00 787.0
22 TraesCS7A01G069100 chr3A 91.260 389 28 3 3463 3850 139585575 139585192 3.410000e-145 525.0
23 TraesCS7A01G069100 chr3A 90.181 387 33 3 3465 3850 237555937 237555555 2.070000e-137 499.0
24 TraesCS7A01G069100 chr3A 83.186 113 16 1 1684 1796 695734705 695734814 2.450000e-17 100.0
25 TraesCS7A01G069100 chr4D 94.061 522 22 9 1 517 471241632 471241115 0.000000e+00 784.0
26 TraesCS7A01G069100 chr4D 82.927 246 37 4 3465 3710 310011791 310011551 2.330000e-52 217.0
27 TraesCS7A01G069100 chr4D 81.648 267 44 4 3465 3728 437152298 437152562 2.330000e-52 217.0
28 TraesCS7A01G069100 chr4D 76.471 391 80 8 3465 3848 230917557 230917172 6.520000e-48 202.0
29 TraesCS7A01G069100 chr2A 94.073 523 19 7 4 517 6077702 6077183 0.000000e+00 784.0
30 TraesCS7A01G069100 chr3D 93.282 387 19 5 3465 3850 136199761 136199381 7.220000e-157 564.0
31 TraesCS7A01G069100 chr3D 83.249 197 32 1 2359 2554 615185953 615186149 3.060000e-41 180.0
32 TraesCS7A01G069100 chr4A 91.990 387 27 4 3465 3850 97816007 97815624 1.220000e-149 540.0
33 TraesCS7A01G069100 chr6B 89.691 388 35 5 3465 3850 92292094 92291710 1.240000e-134 490.0
34 TraesCS7A01G069100 chr6B 88.630 387 38 4 3465 3850 92399257 92398876 2.090000e-127 466.0
35 TraesCS7A01G069100 chr6B 87.597 387 44 4 3465 3850 701456724 701457107 2.730000e-121 446.0
36 TraesCS7A01G069100 chr6B 85.347 389 45 7 3465 3850 6296964 6296585 3.610000e-105 392.0
37 TraesCS7A01G069100 chr1A 89.744 390 30 5 3464 3850 111799865 111799483 1.240000e-134 490.0
38 TraesCS7A01G069100 chr1A 75.949 395 80 10 3465 3850 593039121 593038733 5.080000e-44 189.0
39 TraesCS7A01G069100 chr3B 89.147 387 38 3 3465 3850 764074645 764074262 2.690000e-131 479.0
40 TraesCS7A01G069100 chr6A 89.351 385 33 3 3465 3848 359659732 359660109 9.680000e-131 477.0
41 TraesCS7A01G069100 chr6A 82.071 396 62 9 3457 3850 512068589 512068201 2.870000e-86 329.0
42 TraesCS7A01G069100 chr6A 89.412 85 7 1 1688 1772 33025603 33025521 5.260000e-19 106.0
43 TraesCS7A01G069100 chr1B 87.887 388 44 3 3464 3850 118094683 118095068 1.630000e-123 453.0
44 TraesCS7A01G069100 chr1B 87.887 388 44 3 3464 3850 118171441 118171056 1.630000e-123 453.0
45 TraesCS7A01G069100 chr6D 87.121 396 44 6 3457 3850 460486296 460486686 3.530000e-120 442.0
46 TraesCS7A01G069100 chr6D 85.271 387 50 3 3465 3850 105136397 105136017 3.610000e-105 392.0
47 TraesCS7A01G069100 chr6D 81.569 255 44 3 3457 3710 49641512 49641260 1.400000e-49 207.0
48 TraesCS7A01G069100 chr6D 81.349 252 44 2 3459 3710 44298237 44298485 6.520000e-48 202.0
49 TraesCS7A01G069100 chr6D 78.616 318 56 9 3467 3780 452671002 452670693 2.350000e-47 200.0
50 TraesCS7A01G069100 chr6D 76.020 392 78 11 3465 3848 179844131 179844514 5.080000e-44 189.0
51 TraesCS7A01G069100 chr6D 77.612 201 32 8 1582 1773 434261861 434262057 4.070000e-20 110.0
52 TraesCS7A01G069100 chr6D 100.000 30 0 0 1690 1719 471487263 471487292 5.370000e-04 56.5
53 TraesCS7A01G069100 chr5D 85.788 387 46 6 3465 3850 470247792 470248170 5.990000e-108 401.0
54 TraesCS7A01G069100 chr4B 80.711 394 70 4 3461 3850 659783960 659783569 6.250000e-78 302.0
55 TraesCS7A01G069100 chr4B 76.768 396 75 11 3464 3850 507231634 507231247 5.040000e-49 206.0
56 TraesCS7A01G069100 chrUn 79.012 405 61 17 3458 3849 31681822 31681429 4.940000e-64 255.0
57 TraesCS7A01G069100 chrUn 82.553 235 37 4 3465 3699 50857228 50857458 1.810000e-48 204.0
58 TraesCS7A01G069100 chrUn 82.553 235 37 4 3465 3699 318790847 318791077 1.810000e-48 204.0
59 TraesCS7A01G069100 chrUn 80.377 265 49 2 3465 3728 162823572 162823310 8.440000e-47 198.0
60 TraesCS7A01G069100 chrUn 81.590 239 35 3 3465 3703 84292146 84292375 5.080000e-44 189.0
61 TraesCS7A01G069100 chrUn 81.590 239 35 3 3465 3703 226945471 226945700 5.080000e-44 189.0
62 TraesCS7A01G069100 chrUn 77.338 278 47 7 3465 3728 194090164 194090439 6.660000e-33 152.0
63 TraesCS7A01G069100 chrUn 78.421 190 30 8 3465 3650 29837544 29837362 3.140000e-21 113.0
64 TraesCS7A01G069100 chrUn 100.000 35 0 0 3464 3498 11579598 11579564 8.930000e-07 65.8
65 TraesCS7A01G069100 chrUn 93.023 43 3 0 3457 3499 195343200 195343158 3.210000e-06 63.9
66 TraesCS7A01G069100 chrUn 75.000 120 22 5 1602 1715 94273087 94273204 9.000000e-02 49.1
67 TraesCS7A01G069100 chr7B 97.297 37 1 0 1687 1723 158432532 158432496 3.210000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G069100 chr7A 35175887 35179736 3849 True 7110.0 7110 100.000 1 3850 1 chr7A.!!$R2 3849
1 TraesCS7A01G069100 chr7A 29653072 29653730 658 False 315.0 315 76.866 1206 1816 1 chr7A.!!$F1 610
2 TraesCS7A01G069100 chr7D 34987202 34990828 3626 False 1792.5 2687 90.449 512 3381 2 chr7D.!!$F4 2869
3 TraesCS7A01G069100 chr7D 254982432 254982947 515 False 809.0 809 94.981 1 517 1 chr7D.!!$F3 516
4 TraesCS7A01G069100 chr1D 58116643 58117165 522 True 822.0 822 95.229 1 517 1 chr1D.!!$R2 516
5 TraesCS7A01G069100 chr1D 96912160 96912678 518 False 802.0 802 94.626 1 518 1 chr1D.!!$F1 517
6 TraesCS7A01G069100 chr2D 538595237 538595749 512 True 811.0 811 95.164 1 516 1 chr2D.!!$R1 515
7 TraesCS7A01G069100 chr5A 156854806 156855322 516 False 795.0 795 94.412 1 517 1 chr5A.!!$F1 516
8 TraesCS7A01G069100 chr3A 591736683 591737197 514 False 791.0 791 94.402 1 516 1 chr3A.!!$F1 515
9 TraesCS7A01G069100 chr3A 663793755 663794270 515 False 787.0 787 94.220 1 516 1 chr3A.!!$F2 515
10 TraesCS7A01G069100 chr4D 471241115 471241632 517 True 784.0 784 94.061 1 517 1 chr4D.!!$R3 516
11 TraesCS7A01G069100 chr2A 6077183 6077702 519 True 784.0 784 94.073 4 517 1 chr2A.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 966 0.038166 TGGACCATCCAGAAGGCAAC 59.962 55.000 0.00 0.00 42.67 4.17 F
2093 2985 1.004610 CAGCCATCGTATGCAAGAACG 60.005 52.381 11.96 11.96 40.40 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 3288 0.037232 AGCTACTGTCGAAACCCAGC 60.037 55.0 0.96 0.68 31.76 4.85 R
3718 4622 0.032403 GTGCAGCCACAAAATGAGCA 59.968 50.0 0.00 0.00 41.67 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
535 555 8.682710 TGCTAGTAACAAACAATTTGAGTTCTT 58.317 29.630 8.24 0.00 43.26 2.52
621 641 8.558973 AAAATGAATATTTTGGGCGAAATTGA 57.441 26.923 0.00 0.00 43.10 2.57
622 642 8.558973 AAATGAATATTTTGGGCGAAATTGAA 57.441 26.923 0.00 0.00 32.70 2.69
623 643 8.558973 AATGAATATTTTGGGCGAAATTGAAA 57.441 26.923 0.00 0.00 31.96 2.69
624 644 8.735692 ATGAATATTTTGGGCGAAATTGAAAT 57.264 26.923 0.00 0.00 31.96 2.17
625 645 8.195617 TGAATATTTTGGGCGAAATTGAAATC 57.804 30.769 0.00 0.00 31.96 2.17
626 646 7.279758 TGAATATTTTGGGCGAAATTGAAATCC 59.720 33.333 0.00 0.00 31.96 3.01
627 647 2.645730 TTGGGCGAAATTGAAATCCG 57.354 45.000 0.00 0.00 0.00 4.18
628 648 1.827681 TGGGCGAAATTGAAATCCGA 58.172 45.000 0.00 0.00 0.00 4.55
629 649 2.163509 TGGGCGAAATTGAAATCCGAA 58.836 42.857 0.00 0.00 0.00 4.30
630 650 2.558795 TGGGCGAAATTGAAATCCGAAA 59.441 40.909 0.00 0.00 0.00 3.46
631 651 3.194542 TGGGCGAAATTGAAATCCGAAAT 59.805 39.130 0.00 0.00 0.00 2.17
632 652 4.180817 GGGCGAAATTGAAATCCGAAATT 58.819 39.130 0.00 0.00 0.00 1.82
633 653 4.032786 GGGCGAAATTGAAATCCGAAATTG 59.967 41.667 0.00 0.00 0.00 2.32
651 671 3.121030 CTTGCCCGGTCTGCGAAG 61.121 66.667 0.00 0.29 0.00 3.79
705 725 0.107268 AGCGCTGCCATGTATGATCA 59.893 50.000 10.39 0.00 0.00 2.92
711 731 3.344515 CTGCCATGTATGATCATCCAGG 58.655 50.000 12.53 8.83 0.00 4.45
714 734 3.607741 CCATGTATGATCATCCAGGAGC 58.392 50.000 12.53 0.00 0.00 4.70
729 749 1.705186 AGGAGCCGGGCACAATATTAT 59.295 47.619 23.09 0.00 0.00 1.28
740 760 6.034577 CGGGCACAATATTATCGTGTGTATAG 59.965 42.308 9.24 0.00 43.65 1.31
758 778 2.038837 GCAGCAGCAGCACTCATGA 61.039 57.895 4.63 0.00 45.49 3.07
769 789 3.128242 CAGCACTCATGAAAATCTCACCC 59.872 47.826 0.00 0.00 36.69 4.61
861 881 1.276421 ACTGTAGCTTTCATCTGCGGT 59.724 47.619 0.00 0.00 32.18 5.68
862 882 1.929836 CTGTAGCTTTCATCTGCGGTC 59.070 52.381 0.00 0.00 0.00 4.79
866 886 1.986575 GCTTTCATCTGCGGTCTGCC 61.987 60.000 0.00 0.00 45.60 4.85
868 888 2.819984 TTTCATCTGCGGTCTGCCCC 62.820 60.000 0.00 0.00 45.60 5.80
946 966 0.038166 TGGACCATCCAGAAGGCAAC 59.962 55.000 0.00 0.00 42.67 4.17
968 988 1.446272 CGGGAGCAAGACGAGGAAC 60.446 63.158 0.00 0.00 0.00 3.62
1140 1170 1.077089 GGACTTGTCTTAGTCGGCGC 61.077 60.000 0.00 0.00 44.38 6.53
1145 1175 2.203800 TGTCTTAGTCGGCGCTATTG 57.796 50.000 7.64 4.15 0.00 1.90
1183 1213 3.551259 GGAGGACCGCTTGATCAAA 57.449 52.632 9.88 0.00 0.00 2.69
1191 1221 2.793946 CTTGATCAAAGCGGGCGG 59.206 61.111 9.88 0.00 0.00 6.13
1206 1967 3.257561 CGGCATCTTGAGTCGGCG 61.258 66.667 0.00 0.00 41.08 6.46
1211 1972 1.645034 CATCTTGAGTCGGCGAACAT 58.355 50.000 12.92 0.00 0.00 2.71
1249 2027 7.313951 TGGTGGAACAATTTTTCAAATTCAC 57.686 32.000 6.67 4.84 44.16 3.18
1250 2028 6.881065 TGGTGGAACAATTTTTCAAATTCACA 59.119 30.769 6.67 0.00 44.16 3.58
1253 2031 9.786105 GTGGAACAATTTTTCAAATTCACAAAT 57.214 25.926 6.67 0.00 44.16 2.32
1487 2283 8.783833 TCCTGAACATTTGTTTCAAAATTTCA 57.216 26.923 14.87 14.87 38.56 2.69
1537 2333 8.744008 TTTTACAAAATCGCGAATTTAATCCA 57.256 26.923 20.85 4.22 36.54 3.41
1538 2334 7.728580 TTACAAAATCGCGAATTTAATCCAC 57.271 32.000 20.85 0.00 36.54 4.02
1637 2489 5.220892 CGAAATTTATAAAACAGGCCGCCTA 60.221 40.000 12.83 0.00 29.64 3.93
1647 2499 2.808206 GGCCGCCTAGGTATGTGCT 61.808 63.158 11.31 0.00 43.70 4.40
1649 2501 2.028125 GCCGCCTAGGTATGTGCTGA 62.028 60.000 11.31 0.00 43.70 4.26
1656 2508 2.969821 AGGTATGTGCTGACCCAAAA 57.030 45.000 0.00 0.00 36.27 2.44
1658 2510 2.108250 AGGTATGTGCTGACCCAAAAGT 59.892 45.455 0.00 0.00 36.27 2.66
1681 2533 2.977178 CTGCGTCTTCTCCCAGCT 59.023 61.111 0.00 0.00 0.00 4.24
1745 2601 4.734108 GCGAGCGATTCCCCTATATAGAAC 60.734 50.000 11.53 0.00 0.00 3.01
1777 2633 3.521531 TCACTTATAGGTGGCATTGGTGA 59.478 43.478 14.38 0.00 37.75 4.02
1780 2636 2.425143 ATAGGTGGCATTGGTGAGTG 57.575 50.000 0.00 0.00 0.00 3.51
1796 2652 9.941325 ATTGGTGAGTGATATTTTGCAATTTTA 57.059 25.926 0.00 0.00 0.00 1.52
1799 2655 7.010460 GGTGAGTGATATTTTGCAATTTTAGGC 59.990 37.037 0.00 0.00 0.00 3.93
1800 2656 7.761249 GTGAGTGATATTTTGCAATTTTAGGCT 59.239 33.333 0.00 0.00 0.00 4.58
1817 2673 6.903883 TTAGGCTCAATTTCTATGACGTTC 57.096 37.500 0.00 0.00 0.00 3.95
1818 2674 4.192317 AGGCTCAATTTCTATGACGTTCC 58.808 43.478 0.00 0.00 0.00 3.62
1819 2675 3.001330 GGCTCAATTTCTATGACGTTCCG 59.999 47.826 0.00 0.00 0.00 4.30
1820 2676 3.863424 GCTCAATTTCTATGACGTTCCGA 59.137 43.478 0.00 0.00 0.00 4.55
1821 2677 4.259850 GCTCAATTTCTATGACGTTCCGAC 60.260 45.833 0.00 0.00 0.00 4.79
1822 2678 4.811908 TCAATTTCTATGACGTTCCGACA 58.188 39.130 0.00 0.00 35.99 4.35
1823 2679 4.862574 TCAATTTCTATGACGTTCCGACAG 59.137 41.667 0.00 0.00 35.01 3.51
1834 2690 2.098607 CGTTCCGACAGAATAGGTGCTA 59.901 50.000 0.00 0.00 36.69 3.49
1837 2693 1.341531 CCGACAGAATAGGTGCTAGGG 59.658 57.143 0.00 0.00 0.00 3.53
1839 2695 2.431057 CGACAGAATAGGTGCTAGGGTT 59.569 50.000 0.00 0.00 0.00 4.11
1870 2730 3.134985 GGGGGTTAAAAAGAAAACAGGCA 59.865 43.478 0.00 0.00 0.00 4.75
1871 2731 4.202419 GGGGGTTAAAAAGAAAACAGGCAT 60.202 41.667 0.00 0.00 0.00 4.40
1873 2733 6.464607 GGGGGTTAAAAAGAAAACAGGCATTA 60.465 38.462 0.00 0.00 0.00 1.90
1874 2734 6.425721 GGGGTTAAAAAGAAAACAGGCATTAC 59.574 38.462 0.00 0.00 0.00 1.89
1876 2736 8.361889 GGGTTAAAAAGAAAACAGGCATTACTA 58.638 33.333 0.00 0.00 0.00 1.82
1877 2737 9.188588 GGTTAAAAAGAAAACAGGCATTACTAC 57.811 33.333 0.00 0.00 0.00 2.73
1878 2738 9.188588 GTTAAAAAGAAAACAGGCATTACTACC 57.811 33.333 0.00 0.00 0.00 3.18
1898 2770 6.757010 ACTACCTACTAATGATCACTTTTGCG 59.243 38.462 0.00 0.00 0.00 4.85
1979 2851 2.516930 CCAGGTAATGCCCGCCAG 60.517 66.667 0.00 0.00 38.26 4.85
1992 2864 1.275010 CCCGCCAGCAAACCTTTAATT 59.725 47.619 0.00 0.00 0.00 1.40
1996 2868 4.084066 CCGCCAGCAAACCTTTAATTTTTC 60.084 41.667 0.00 0.00 0.00 2.29
1997 2869 4.084066 CGCCAGCAAACCTTTAATTTTTCC 60.084 41.667 0.00 0.00 0.00 3.13
2056 2944 7.610865 TGTTCCCTAATTAATTTCCTTTGCAG 58.389 34.615 5.91 0.00 0.00 4.41
2057 2945 7.453126 TGTTCCCTAATTAATTTCCTTTGCAGA 59.547 33.333 5.91 0.00 0.00 4.26
2060 2948 7.453126 TCCCTAATTAATTTCCTTTGCAGACAA 59.547 33.333 5.91 0.00 0.00 3.18
2061 2949 7.545615 CCCTAATTAATTTCCTTTGCAGACAAC 59.454 37.037 5.91 0.00 34.87 3.32
2062 2950 8.087750 CCTAATTAATTTCCTTTGCAGACAACA 58.912 33.333 5.91 0.00 34.87 3.33
2064 2952 7.951530 ATTAATTTCCTTTGCAGACAACAAG 57.048 32.000 0.00 0.00 34.87 3.16
2067 2955 2.309613 TCCTTTGCAGACAACAAGCAT 58.690 42.857 0.00 0.00 38.19 3.79
2068 2956 2.694628 TCCTTTGCAGACAACAAGCATT 59.305 40.909 0.00 0.00 38.19 3.56
2093 2985 1.004610 CAGCCATCGTATGCAAGAACG 60.005 52.381 11.96 11.96 40.40 3.95
2110 3002 3.063045 AGAACGTTCGAACTGGAAACAAC 59.937 43.478 24.80 7.00 42.06 3.32
2158 3050 1.227853 ACCAAACGGCAGACCTCAC 60.228 57.895 0.00 0.00 0.00 3.51
2220 3112 2.594592 AACTTCACCTGCCGCCAC 60.595 61.111 0.00 0.00 0.00 5.01
2263 3155 2.680370 GGGGCCTTCCACTACCTGG 61.680 68.421 0.84 0.00 42.29 4.45
2348 3240 1.594293 CACCTTTCGCACTGGTCGT 60.594 57.895 0.00 0.00 30.72 4.34
2419 3311 2.629137 TGGGTTTCGACAGTAGCTACAA 59.371 45.455 25.28 8.01 0.00 2.41
2420 3312 3.251571 GGGTTTCGACAGTAGCTACAAG 58.748 50.000 25.28 18.63 0.00 3.16
2447 3339 4.635473 TGGTAGGAGGATGGAAGAATCTT 58.365 43.478 0.00 0.00 0.00 2.40
2582 3474 2.280628 CTGGTAATGTTTCTCGAGGGC 58.719 52.381 13.56 3.78 0.00 5.19
2585 3477 2.007608 GTAATGTTTCTCGAGGGCCAC 58.992 52.381 13.56 0.00 0.00 5.01
2607 3499 1.899814 GGTTTTTCCCCATCAGGAACC 59.100 52.381 0.00 0.00 45.65 3.62
2608 3500 2.604139 GTTTTTCCCCATCAGGAACCA 58.396 47.619 0.00 0.00 45.65 3.67
2634 3526 3.141398 GAGCAACACTGGAATTCAGACA 58.859 45.455 7.93 0.00 46.18 3.41
2636 3528 3.567164 AGCAACACTGGAATTCAGACAAG 59.433 43.478 7.93 0.00 46.18 3.16
2641 3533 2.787994 CTGGAATTCAGACAAGCCAGT 58.212 47.619 7.93 0.00 46.18 4.00
2827 3719 1.474077 CTACCCAATTCTGCAGGCAAC 59.526 52.381 15.13 0.00 0.00 4.17
2829 3721 0.899720 CCCAATTCTGCAGGCAACAT 59.100 50.000 15.13 0.00 41.41 2.71
2830 3722 1.134907 CCCAATTCTGCAGGCAACATC 60.135 52.381 15.13 0.00 41.41 3.06
2837 3729 3.599584 CAGGCAACATCCTGCAGG 58.400 61.111 27.87 27.87 46.11 4.85
2838 3730 2.362120 AGGCAACATCCTGCAGGC 60.362 61.111 28.91 14.76 44.52 4.85
2856 3748 2.556144 GCAGTATCCATGATCCTGCA 57.444 50.000 14.43 0.00 46.48 4.41
2857 3749 2.854963 GCAGTATCCATGATCCTGCAA 58.145 47.619 14.43 0.00 46.48 4.08
2858 3750 3.216800 GCAGTATCCATGATCCTGCAAA 58.783 45.455 14.43 0.00 46.48 3.68
2859 3751 3.252701 GCAGTATCCATGATCCTGCAAAG 59.747 47.826 14.43 0.00 46.48 2.77
2861 3753 2.376695 ATCCATGATCCTGCAAAGGG 57.623 50.000 0.00 0.00 0.00 3.95
2862 3754 0.259647 TCCATGATCCTGCAAAGGGG 59.740 55.000 0.00 0.00 0.00 4.79
2863 3755 1.397390 CCATGATCCTGCAAAGGGGC 61.397 60.000 0.00 0.00 0.00 5.80
2865 3757 2.442830 GATCCTGCAAAGGGGCCC 60.443 66.667 17.12 17.12 0.00 5.80
2930 3822 1.790623 CTGTGTGGTGTTGCTACGTAC 59.209 52.381 0.00 0.00 0.00 3.67
2949 3841 9.206870 CTACGTACTAGGGTTGTTTTTATTTCA 57.793 33.333 0.00 0.00 0.00 2.69
2974 3866 6.172630 ACAAATTTGCTTCCATGTATTTCCC 58.827 36.000 18.12 0.00 0.00 3.97
2975 3867 6.013466 ACAAATTTGCTTCCATGTATTTCCCT 60.013 34.615 18.12 0.00 0.00 4.20
3033 3925 1.679680 CCATGGCCAACAGCATTAGAG 59.320 52.381 10.96 0.00 46.50 2.43
3041 3933 5.360591 GCCAACAGCATTAGAGTAGTGTAT 58.639 41.667 0.00 0.00 42.97 2.29
3061 3954 8.470805 AGTGTATGGTTACTTTCTCTATCAGTG 58.529 37.037 0.00 0.00 0.00 3.66
3063 3956 8.251026 TGTATGGTTACTTTCTCTATCAGTGTG 58.749 37.037 0.00 0.00 0.00 3.82
3100 3993 9.460906 TGTAACACCAACGGTTTAATTAAATTC 57.539 29.630 13.54 8.56 31.02 2.17
3108 4001 8.638565 CAACGGTTTAATTAAATTCTTCTGCAG 58.361 33.333 13.54 7.63 0.00 4.41
3125 4018 1.470098 GCAGTTTGCATCGTCCATTCT 59.530 47.619 0.00 0.00 44.26 2.40
3156 4049 5.404366 GCATTTGCATAGCATGTCCTATTTG 59.596 40.000 0.00 0.00 38.76 2.32
3240 4139 9.141400 GTGGTTTAACTCTAGTTTCATCTACTG 57.859 37.037 0.00 0.00 39.31 2.74
3335 4239 7.704899 GCTACTTTCTAAAAATTGTTGTGGTGT 59.295 33.333 0.00 0.00 0.00 4.16
3348 4252 0.798776 GTGGTGTTCAAGGAGATGCG 59.201 55.000 0.00 0.00 0.00 4.73
3368 4272 2.483877 CGCCTAACTGCTGTTTGATTGA 59.516 45.455 14.54 0.00 37.59 2.57
3381 4285 4.458989 TGTTTGATTGAATAGACAGGCCAC 59.541 41.667 5.01 0.00 0.00 5.01
3382 4286 3.281727 TGATTGAATAGACAGGCCACC 57.718 47.619 5.01 0.00 0.00 4.61
3383 4287 2.575735 TGATTGAATAGACAGGCCACCA 59.424 45.455 5.01 0.00 0.00 4.17
3384 4288 3.202818 TGATTGAATAGACAGGCCACCAT 59.797 43.478 5.01 0.00 0.00 3.55
3385 4289 4.411869 TGATTGAATAGACAGGCCACCATA 59.588 41.667 5.01 0.00 0.00 2.74
3386 4290 5.073554 TGATTGAATAGACAGGCCACCATAT 59.926 40.000 5.01 0.00 0.00 1.78
3387 4291 6.272090 TGATTGAATAGACAGGCCACCATATA 59.728 38.462 5.01 0.00 0.00 0.86
3388 4292 5.483685 TGAATAGACAGGCCACCATATAC 57.516 43.478 5.01 0.00 0.00 1.47
3389 4293 4.021456 TGAATAGACAGGCCACCATATACG 60.021 45.833 5.01 0.00 0.00 3.06
3390 4294 1.789523 AGACAGGCCACCATATACGT 58.210 50.000 5.01 0.00 0.00 3.57
3391 4295 2.116238 AGACAGGCCACCATATACGTT 58.884 47.619 5.01 0.00 0.00 3.99
3392 4296 2.102588 AGACAGGCCACCATATACGTTC 59.897 50.000 5.01 0.00 0.00 3.95
3393 4297 2.102588 GACAGGCCACCATATACGTTCT 59.897 50.000 5.01 0.00 0.00 3.01
3394 4298 3.302161 ACAGGCCACCATATACGTTCTA 58.698 45.455 5.01 0.00 0.00 2.10
3395 4299 3.901844 ACAGGCCACCATATACGTTCTAT 59.098 43.478 5.01 0.00 0.00 1.98
3396 4300 5.081728 ACAGGCCACCATATACGTTCTATA 58.918 41.667 5.01 0.00 0.00 1.31
3397 4301 5.720041 ACAGGCCACCATATACGTTCTATAT 59.280 40.000 5.01 0.00 0.00 0.86
3398 4302 6.893554 ACAGGCCACCATATACGTTCTATATA 59.106 38.462 5.01 0.00 0.00 0.86
3399 4303 7.563924 ACAGGCCACCATATACGTTCTATATAT 59.436 37.037 5.01 0.00 0.00 0.86
3400 4304 8.421784 CAGGCCACCATATACGTTCTATATATT 58.578 37.037 5.01 0.00 0.00 1.28
3401 4305 8.989131 AGGCCACCATATACGTTCTATATATTT 58.011 33.333 5.01 0.00 0.00 1.40
3402 4306 9.257651 GGCCACCATATACGTTCTATATATTTC 57.742 37.037 0.00 0.00 0.00 2.17
3430 4334 9.265901 ACATGTTAGTTGATATCTTCTGTATGC 57.734 33.333 3.98 0.00 0.00 3.14
3431 4335 9.264719 CATGTTAGTTGATATCTTCTGTATGCA 57.735 33.333 3.98 0.00 0.00 3.96
3432 4336 9.836864 ATGTTAGTTGATATCTTCTGTATGCAA 57.163 29.630 3.98 0.00 0.00 4.08
3433 4337 9.665719 TGTTAGTTGATATCTTCTGTATGCAAA 57.334 29.630 3.98 0.00 0.00 3.68
3440 4344 8.347771 TGATATCTTCTGTATGCAAAATTCTGC 58.652 33.333 3.98 0.00 42.95 4.26
3452 4356 6.443876 GCAAAATTCTGCACTAGTCTTTTG 57.556 37.500 0.00 4.56 42.17 2.44
3453 4357 5.403466 GCAAAATTCTGCACTAGTCTTTTGG 59.597 40.000 0.00 0.00 42.17 3.28
3454 4358 6.507023 CAAAATTCTGCACTAGTCTTTTGGT 58.493 36.000 0.00 0.00 36.43 3.67
3455 4359 7.648142 CAAAATTCTGCACTAGTCTTTTGGTA 58.352 34.615 0.00 0.00 36.43 3.25
3456 4360 8.299570 CAAAATTCTGCACTAGTCTTTTGGTAT 58.700 33.333 0.00 0.00 36.43 2.73
3457 4361 8.409358 AAATTCTGCACTAGTCTTTTGGTATT 57.591 30.769 0.00 0.00 0.00 1.89
3458 4362 9.515226 AAATTCTGCACTAGTCTTTTGGTATTA 57.485 29.630 0.00 0.00 0.00 0.98
3459 4363 9.686683 AATTCTGCACTAGTCTTTTGGTATTAT 57.313 29.630 0.00 0.00 0.00 1.28
3460 4364 9.686683 ATTCTGCACTAGTCTTTTGGTATTATT 57.313 29.630 0.00 0.00 0.00 1.40
3462 4366 9.817809 TCTGCACTAGTCTTTTGGTATTATTAG 57.182 33.333 0.00 0.00 0.00 1.73
3463 4367 8.958119 TGCACTAGTCTTTTGGTATTATTAGG 57.042 34.615 0.00 0.00 0.00 2.69
3464 4368 8.764558 TGCACTAGTCTTTTGGTATTATTAGGA 58.235 33.333 0.00 0.00 0.00 2.94
3465 4369 9.043079 GCACTAGTCTTTTGGTATTATTAGGAC 57.957 37.037 0.00 0.00 0.00 3.85
3470 4374 8.989131 AGTCTTTTGGTATTATTAGGACTAGCA 58.011 33.333 0.00 0.00 31.08 3.49
3471 4375 9.043079 GTCTTTTGGTATTATTAGGACTAGCAC 57.957 37.037 0.00 0.00 0.00 4.40
3472 4376 8.764558 TCTTTTGGTATTATTAGGACTAGCACA 58.235 33.333 0.00 0.00 0.00 4.57
3473 4377 9.561069 CTTTTGGTATTATTAGGACTAGCACAT 57.439 33.333 0.00 0.00 0.00 3.21
3486 4390 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
3487 4391 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
3488 4392 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
3489 4393 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
3490 4394 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
3491 4395 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
3507 4411 6.779115 GTTGCAACGGGAGATTTTTATTTT 57.221 33.333 14.90 0.00 0.00 1.82
3508 4412 7.184800 GTTGCAACGGGAGATTTTTATTTTT 57.815 32.000 14.90 0.00 0.00 1.94
3509 4413 6.777526 TGCAACGGGAGATTTTTATTTTTG 57.222 33.333 0.00 0.00 0.00 2.44
3510 4414 5.178438 TGCAACGGGAGATTTTTATTTTTGC 59.822 36.000 0.00 0.00 36.89 3.68
3511 4415 5.178438 GCAACGGGAGATTTTTATTTTTGCA 59.822 36.000 0.00 0.00 36.49 4.08
3512 4416 6.293135 GCAACGGGAGATTTTTATTTTTGCAA 60.293 34.615 0.00 0.00 36.49 4.08
3513 4417 7.290118 CAACGGGAGATTTTTATTTTTGCAAG 58.710 34.615 0.00 0.00 0.00 4.01
3514 4418 6.754193 ACGGGAGATTTTTATTTTTGCAAGA 58.246 32.000 0.00 0.00 0.00 3.02
3515 4419 7.213678 ACGGGAGATTTTTATTTTTGCAAGAA 58.786 30.769 4.71 4.71 0.00 2.52
3516 4420 7.384932 ACGGGAGATTTTTATTTTTGCAAGAAG 59.615 33.333 8.50 0.00 0.00 2.85
3517 4421 7.521529 GGGAGATTTTTATTTTTGCAAGAAGC 58.478 34.615 8.50 0.00 45.96 3.86
3540 4444 4.991153 TCGAGAGAGCTAATTGATGTGT 57.009 40.909 0.00 0.00 34.84 3.72
3541 4445 4.926244 TCGAGAGAGCTAATTGATGTGTC 58.074 43.478 0.00 0.00 34.84 3.67
3542 4446 4.047822 CGAGAGAGCTAATTGATGTGTCC 58.952 47.826 0.00 0.00 0.00 4.02
3543 4447 4.440663 CGAGAGAGCTAATTGATGTGTCCA 60.441 45.833 0.00 0.00 0.00 4.02
3544 4448 5.609423 GAGAGAGCTAATTGATGTGTCCAT 58.391 41.667 0.00 0.00 0.00 3.41
3545 4449 5.609423 AGAGAGCTAATTGATGTGTCCATC 58.391 41.667 0.00 0.00 46.41 3.51
3560 4464 1.462616 CCATCAAAATGGTCTCCGCA 58.537 50.000 0.00 0.00 46.43 5.69
3561 4465 1.402968 CCATCAAAATGGTCTCCGCAG 59.597 52.381 0.00 0.00 46.43 5.18
3562 4466 1.098050 ATCAAAATGGTCTCCGCAGC 58.902 50.000 0.00 0.00 0.00 5.25
3563 4467 1.135315 CAAAATGGTCTCCGCAGCG 59.865 57.895 8.18 8.18 0.00 5.18
3576 4480 3.536917 CAGCGGAGGGGCGACATA 61.537 66.667 0.00 0.00 38.18 2.29
3577 4481 3.227276 AGCGGAGGGGCGACATAG 61.227 66.667 0.00 0.00 38.18 2.23
3578 4482 4.971125 GCGGAGGGGCGACATAGC 62.971 72.222 0.00 0.00 0.00 2.97
3579 4483 4.647615 CGGAGGGGCGACATAGCG 62.648 72.222 0.00 0.00 38.18 4.26
3580 4484 3.224324 GGAGGGGCGACATAGCGA 61.224 66.667 0.00 0.00 38.18 4.93
3581 4485 2.792947 GGAGGGGCGACATAGCGAA 61.793 63.158 0.00 0.00 38.18 4.70
3582 4486 1.300233 GAGGGGCGACATAGCGAAG 60.300 63.158 0.00 0.00 38.18 3.79
3583 4487 1.735376 GAGGGGCGACATAGCGAAGA 61.735 60.000 0.00 0.00 38.18 2.87
3584 4488 1.300233 GGGGCGACATAGCGAAGAG 60.300 63.158 0.00 0.00 38.18 2.85
3585 4489 1.437986 GGGCGACATAGCGAAGAGT 59.562 57.895 0.00 0.00 38.18 3.24
3586 4490 0.179108 GGGCGACATAGCGAAGAGTT 60.179 55.000 0.00 0.00 38.18 3.01
3587 4491 0.924090 GGCGACATAGCGAAGAGTTG 59.076 55.000 0.00 0.00 38.18 3.16
3588 4492 0.299003 GCGACATAGCGAAGAGTTGC 59.701 55.000 0.00 0.00 34.59 4.17
3589 4493 0.567968 CGACATAGCGAAGAGTTGCG 59.432 55.000 0.00 0.00 35.87 4.85
3590 4494 0.924090 GACATAGCGAAGAGTTGCGG 59.076 55.000 0.00 0.00 35.87 5.69
3591 4495 0.246635 ACATAGCGAAGAGTTGCGGT 59.753 50.000 0.00 0.00 41.45 5.68
3592 4496 0.647410 CATAGCGAAGAGTTGCGGTG 59.353 55.000 0.00 0.00 38.78 4.94
3593 4497 0.246635 ATAGCGAAGAGTTGCGGTGT 59.753 50.000 0.00 0.00 38.78 4.16
3594 4498 0.032952 TAGCGAAGAGTTGCGGTGTT 59.967 50.000 0.00 0.00 38.78 3.32
3595 4499 1.204312 GCGAAGAGTTGCGGTGTTC 59.796 57.895 0.00 0.00 0.00 3.18
3596 4500 1.860078 CGAAGAGTTGCGGTGTTCC 59.140 57.895 0.00 0.00 0.00 3.62
3597 4501 1.566018 CGAAGAGTTGCGGTGTTCCC 61.566 60.000 0.00 0.00 0.00 3.97
3598 4502 0.534203 GAAGAGTTGCGGTGTTCCCA 60.534 55.000 0.00 0.00 0.00 4.37
3599 4503 0.818040 AAGAGTTGCGGTGTTCCCAC 60.818 55.000 0.00 0.00 41.06 4.61
3600 4504 2.590575 AGTTGCGGTGTTCCCACG 60.591 61.111 0.00 0.00 42.80 4.94
3601 4505 3.656045 GTTGCGGTGTTCCCACGG 61.656 66.667 0.00 0.00 42.80 4.94
3602 4506 4.939368 TTGCGGTGTTCCCACGGG 62.939 66.667 0.00 0.00 42.80 5.28
3605 4509 3.931247 CGGTGTTCCCACGGGTCA 61.931 66.667 1.07 0.51 42.80 4.02
3606 4510 2.754375 GGTGTTCCCACGGGTCAT 59.246 61.111 1.07 0.00 42.80 3.06
3607 4511 1.674322 GGTGTTCCCACGGGTCATG 60.674 63.158 1.07 0.00 42.80 3.07
3608 4512 1.072505 GTGTTCCCACGGGTCATGT 59.927 57.895 1.07 0.00 36.47 3.21
3609 4513 0.536460 GTGTTCCCACGGGTCATGTT 60.536 55.000 1.07 0.00 36.47 2.71
3610 4514 0.183971 TGTTCCCACGGGTCATGTTT 59.816 50.000 1.07 0.00 36.47 2.83
3611 4515 0.596082 GTTCCCACGGGTCATGTTTG 59.404 55.000 1.07 0.00 36.47 2.93
3612 4516 0.538516 TTCCCACGGGTCATGTTTGG 60.539 55.000 1.07 0.00 36.47 3.28
3613 4517 2.635443 CCCACGGGTCATGTTTGGC 61.635 63.158 0.00 0.00 0.00 4.52
3618 4522 4.114997 GGTCATGTTTGGCCCGCG 62.115 66.667 0.00 0.00 42.15 6.46
3619 4523 3.053291 GTCATGTTTGGCCCGCGA 61.053 61.111 8.23 0.00 0.00 5.87
3620 4524 2.745884 TCATGTTTGGCCCGCGAG 60.746 61.111 8.23 0.00 0.00 5.03
3621 4525 2.745884 CATGTTTGGCCCGCGAGA 60.746 61.111 8.23 0.00 0.00 4.04
3622 4526 2.114670 CATGTTTGGCCCGCGAGAT 61.115 57.895 8.23 0.00 0.00 2.75
3623 4527 1.819632 ATGTTTGGCCCGCGAGATC 60.820 57.895 8.23 0.00 0.00 2.75
3624 4528 2.125106 GTTTGGCCCGCGAGATCT 60.125 61.111 8.23 0.00 0.00 2.75
3625 4529 1.745489 GTTTGGCCCGCGAGATCTT 60.745 57.895 8.23 0.00 0.00 2.40
3626 4530 1.449601 TTTGGCCCGCGAGATCTTC 60.450 57.895 8.23 0.00 0.00 2.87
3627 4531 2.178876 TTTGGCCCGCGAGATCTTCA 62.179 55.000 8.23 0.00 0.00 3.02
3628 4532 1.971505 TTGGCCCGCGAGATCTTCAT 61.972 55.000 8.23 0.00 0.00 2.57
3629 4533 1.112916 TGGCCCGCGAGATCTTCATA 61.113 55.000 8.23 0.00 0.00 2.15
3630 4534 0.389166 GGCCCGCGAGATCTTCATAG 60.389 60.000 8.23 0.00 0.00 2.23
3631 4535 0.315568 GCCCGCGAGATCTTCATAGT 59.684 55.000 8.23 0.00 0.00 2.12
3632 4536 1.932604 GCCCGCGAGATCTTCATAGTG 60.933 57.143 8.23 0.00 0.00 2.74
3633 4537 1.336332 CCCGCGAGATCTTCATAGTGG 60.336 57.143 8.23 3.01 0.00 4.00
3634 4538 1.338337 CCGCGAGATCTTCATAGTGGT 59.662 52.381 8.23 0.00 0.00 4.16
3635 4539 2.389059 CGCGAGATCTTCATAGTGGTG 58.611 52.381 0.00 0.00 0.00 4.17
3636 4540 2.748605 GCGAGATCTTCATAGTGGTGG 58.251 52.381 0.00 0.00 0.00 4.61
3637 4541 2.546795 GCGAGATCTTCATAGTGGTGGG 60.547 54.545 0.00 0.00 0.00 4.61
3638 4542 2.036475 CGAGATCTTCATAGTGGTGGGG 59.964 54.545 0.00 0.00 0.00 4.96
3639 4543 3.041946 GAGATCTTCATAGTGGTGGGGT 58.958 50.000 0.00 0.00 0.00 4.95
3640 4544 3.456277 GAGATCTTCATAGTGGTGGGGTT 59.544 47.826 0.00 0.00 0.00 4.11
3641 4545 3.200825 AGATCTTCATAGTGGTGGGGTTG 59.799 47.826 0.00 0.00 0.00 3.77
3642 4546 1.633432 TCTTCATAGTGGTGGGGTTGG 59.367 52.381 0.00 0.00 0.00 3.77
3643 4547 1.354368 CTTCATAGTGGTGGGGTTGGT 59.646 52.381 0.00 0.00 0.00 3.67
3644 4548 0.988832 TCATAGTGGTGGGGTTGGTC 59.011 55.000 0.00 0.00 0.00 4.02
3645 4549 0.695924 CATAGTGGTGGGGTTGGTCA 59.304 55.000 0.00 0.00 0.00 4.02
3646 4550 0.991920 ATAGTGGTGGGGTTGGTCAG 59.008 55.000 0.00 0.00 0.00 3.51
3647 4551 0.400815 TAGTGGTGGGGTTGGTCAGT 60.401 55.000 0.00 0.00 0.00 3.41
3648 4552 1.528309 GTGGTGGGGTTGGTCAGTG 60.528 63.158 0.00 0.00 0.00 3.66
3649 4553 2.004120 TGGTGGGGTTGGTCAGTGT 61.004 57.895 0.00 0.00 0.00 3.55
3650 4554 1.528309 GGTGGGGTTGGTCAGTGTG 60.528 63.158 0.00 0.00 0.00 3.82
3651 4555 1.528309 GTGGGGTTGGTCAGTGTGG 60.528 63.158 0.00 0.00 0.00 4.17
3652 4556 2.004120 TGGGGTTGGTCAGTGTGGT 61.004 57.895 0.00 0.00 0.00 4.16
3653 4557 1.528309 GGGGTTGGTCAGTGTGGTG 60.528 63.158 0.00 0.00 0.00 4.17
3654 4558 1.528309 GGGTTGGTCAGTGTGGTGG 60.528 63.158 0.00 0.00 0.00 4.61
3655 4559 1.528309 GGTTGGTCAGTGTGGTGGG 60.528 63.158 0.00 0.00 0.00 4.61
3656 4560 2.193536 GTTGGTCAGTGTGGTGGGC 61.194 63.158 0.00 0.00 0.00 5.36
3657 4561 2.684499 TTGGTCAGTGTGGTGGGCA 61.684 57.895 0.00 0.00 0.00 5.36
3658 4562 2.594592 GGTCAGTGTGGTGGGCAC 60.595 66.667 0.00 0.00 37.13 5.01
3671 4575 3.414700 GGCACCACTCAACTCGCG 61.415 66.667 0.00 0.00 0.00 5.87
3672 4576 4.077188 GCACCACTCAACTCGCGC 62.077 66.667 0.00 0.00 0.00 6.86
3673 4577 3.414700 CACCACTCAACTCGCGCC 61.415 66.667 0.00 0.00 0.00 6.53
3674 4578 4.681978 ACCACTCAACTCGCGCCC 62.682 66.667 0.00 0.00 0.00 6.13
3675 4579 4.379243 CCACTCAACTCGCGCCCT 62.379 66.667 0.00 0.00 0.00 5.19
3676 4580 2.357517 CACTCAACTCGCGCCCTT 60.358 61.111 0.00 0.00 0.00 3.95
3677 4581 1.961277 CACTCAACTCGCGCCCTTT 60.961 57.895 0.00 0.00 0.00 3.11
3678 4582 1.227853 ACTCAACTCGCGCCCTTTT 60.228 52.632 0.00 0.00 0.00 2.27
3679 4583 0.818040 ACTCAACTCGCGCCCTTTTT 60.818 50.000 0.00 0.00 0.00 1.94
3694 4598 4.068280 TTTTTCCTTCGGGTCCGC 57.932 55.556 4.27 0.00 39.59 5.54
3695 4599 1.601477 TTTTTCCTTCGGGTCCGCC 60.601 57.895 4.27 0.00 39.59 6.13
3696 4600 2.059345 TTTTTCCTTCGGGTCCGCCT 62.059 55.000 4.27 0.00 39.59 5.52
3697 4601 2.459202 TTTTCCTTCGGGTCCGCCTC 62.459 60.000 4.27 0.00 39.59 4.70
3705 4609 3.376078 GGTCCGCCTCCGTGTGTA 61.376 66.667 0.00 0.00 0.00 2.90
3706 4610 2.181021 GTCCGCCTCCGTGTGTAG 59.819 66.667 0.00 0.00 0.00 2.74
3707 4611 3.066190 TCCGCCTCCGTGTGTAGG 61.066 66.667 0.00 0.00 35.86 3.18
3708 4612 3.379445 CCGCCTCCGTGTGTAGGT 61.379 66.667 0.00 0.00 35.16 3.08
3709 4613 2.654877 CGCCTCCGTGTGTAGGTT 59.345 61.111 0.00 0.00 35.16 3.50
3710 4614 1.597797 CCGCCTCCGTGTGTAGGTTA 61.598 60.000 0.00 0.00 35.16 2.85
3711 4615 0.179145 CGCCTCCGTGTGTAGGTTAG 60.179 60.000 0.00 0.00 35.16 2.34
3712 4616 0.175073 GCCTCCGTGTGTAGGTTAGG 59.825 60.000 0.00 0.00 35.16 2.69
3713 4617 1.553706 CCTCCGTGTGTAGGTTAGGT 58.446 55.000 0.00 0.00 0.00 3.08
3714 4618 1.897802 CCTCCGTGTGTAGGTTAGGTT 59.102 52.381 0.00 0.00 0.00 3.50
3715 4619 2.353406 CCTCCGTGTGTAGGTTAGGTTG 60.353 54.545 0.00 0.00 0.00 3.77
3716 4620 1.001181 TCCGTGTGTAGGTTAGGTTGC 59.999 52.381 0.00 0.00 0.00 4.17
3717 4621 1.435577 CGTGTGTAGGTTAGGTTGCC 58.564 55.000 0.00 0.00 0.00 4.52
3718 4622 1.001633 CGTGTGTAGGTTAGGTTGCCT 59.998 52.381 0.00 0.00 38.81 4.75
3719 4623 2.423577 GTGTGTAGGTTAGGTTGCCTG 58.576 52.381 0.00 0.00 36.38 4.85
3720 4624 1.271163 TGTGTAGGTTAGGTTGCCTGC 60.271 52.381 0.00 0.00 37.88 4.85
3721 4625 1.003233 GTGTAGGTTAGGTTGCCTGCT 59.997 52.381 0.00 0.00 38.15 4.24
3722 4626 1.278127 TGTAGGTTAGGTTGCCTGCTC 59.722 52.381 0.00 0.00 38.15 4.26
3723 4627 1.278127 GTAGGTTAGGTTGCCTGCTCA 59.722 52.381 0.00 0.00 35.13 4.26
3724 4628 0.995024 AGGTTAGGTTGCCTGCTCAT 59.005 50.000 0.00 0.00 34.61 2.90
3725 4629 1.355720 AGGTTAGGTTGCCTGCTCATT 59.644 47.619 0.00 0.00 34.61 2.57
3726 4630 2.171003 GGTTAGGTTGCCTGCTCATTT 58.829 47.619 0.00 0.00 34.61 2.32
3727 4631 2.562738 GGTTAGGTTGCCTGCTCATTTT 59.437 45.455 0.00 0.00 34.61 1.82
3728 4632 3.578688 GTTAGGTTGCCTGCTCATTTTG 58.421 45.455 0.00 0.00 34.61 2.44
3729 4633 1.708341 AGGTTGCCTGCTCATTTTGT 58.292 45.000 0.00 0.00 29.57 2.83
3730 4634 1.342174 AGGTTGCCTGCTCATTTTGTG 59.658 47.619 0.00 0.00 29.57 3.33
3731 4635 1.606224 GGTTGCCTGCTCATTTTGTGG 60.606 52.381 0.00 0.00 0.00 4.17
3732 4636 0.033781 TTGCCTGCTCATTTTGTGGC 59.966 50.000 0.00 0.00 40.62 5.01
3733 4637 0.828762 TGCCTGCTCATTTTGTGGCT 60.829 50.000 0.00 0.00 40.82 4.75
3734 4638 0.389426 GCCTGCTCATTTTGTGGCTG 60.389 55.000 0.00 0.00 37.58 4.85
3735 4639 0.389426 CCTGCTCATTTTGTGGCTGC 60.389 55.000 0.00 0.00 0.00 5.25
3736 4640 0.315886 CTGCTCATTTTGTGGCTGCA 59.684 50.000 0.50 0.00 0.00 4.41
3737 4641 0.032403 TGCTCATTTTGTGGCTGCAC 59.968 50.000 0.50 0.00 0.00 4.57
3738 4642 1.005294 GCTCATTTTGTGGCTGCACG 61.005 55.000 0.50 0.00 0.00 5.34
3739 4643 0.387622 CTCATTTTGTGGCTGCACGG 60.388 55.000 0.50 0.00 0.00 4.94
3740 4644 1.106351 TCATTTTGTGGCTGCACGGT 61.106 50.000 0.50 0.00 0.00 4.83
3741 4645 0.940519 CATTTTGTGGCTGCACGGTG 60.941 55.000 3.15 3.15 0.00 4.94
3742 4646 1.106351 ATTTTGTGGCTGCACGGTGA 61.106 50.000 13.29 0.00 0.00 4.02
3743 4647 1.999071 TTTTGTGGCTGCACGGTGAC 61.999 55.000 13.29 3.96 0.00 3.67
3744 4648 4.927782 TGTGGCTGCACGGTGACC 62.928 66.667 13.29 10.11 0.00 4.02
3745 4649 4.626081 GTGGCTGCACGGTGACCT 62.626 66.667 13.29 0.00 0.00 3.85
3746 4650 3.872603 TGGCTGCACGGTGACCTT 61.873 61.111 13.29 0.00 0.00 3.50
3747 4651 3.050275 GGCTGCACGGTGACCTTC 61.050 66.667 13.29 0.00 0.00 3.46
3748 4652 3.414700 GCTGCACGGTGACCTTCG 61.415 66.667 13.29 0.00 0.00 3.79
3749 4653 2.738521 CTGCACGGTGACCTTCGG 60.739 66.667 13.29 0.00 0.00 4.30
3750 4654 4.308458 TGCACGGTGACCTTCGGG 62.308 66.667 13.29 0.00 41.87 5.14
3759 4663 3.080647 GACCTTCGGGGCATAGTTG 57.919 57.895 0.00 0.00 44.35 3.16
3760 4664 0.252197 GACCTTCGGGGCATAGTTGT 59.748 55.000 0.00 0.00 44.35 3.32
3761 4665 0.696501 ACCTTCGGGGCATAGTTGTT 59.303 50.000 0.00 0.00 40.03 2.83
3762 4666 1.074889 ACCTTCGGGGCATAGTTGTTT 59.925 47.619 0.00 0.00 40.03 2.83
3763 4667 1.743394 CCTTCGGGGCATAGTTGTTTC 59.257 52.381 0.00 0.00 0.00 2.78
3764 4668 1.396996 CTTCGGGGCATAGTTGTTTCG 59.603 52.381 0.00 0.00 0.00 3.46
3765 4669 0.609151 TCGGGGCATAGTTGTTTCGA 59.391 50.000 0.00 0.00 0.00 3.71
3766 4670 1.208535 TCGGGGCATAGTTGTTTCGAT 59.791 47.619 0.00 0.00 0.00 3.59
3767 4671 1.330521 CGGGGCATAGTTGTTTCGATG 59.669 52.381 0.00 0.00 0.00 3.84
3768 4672 2.639065 GGGGCATAGTTGTTTCGATGA 58.361 47.619 0.00 0.00 0.00 2.92
3769 4673 2.354821 GGGGCATAGTTGTTTCGATGAC 59.645 50.000 0.00 0.00 0.00 3.06
3770 4674 3.006940 GGGCATAGTTGTTTCGATGACA 58.993 45.455 0.00 0.00 31.60 3.58
3771 4675 3.181510 GGGCATAGTTGTTTCGATGACAC 60.182 47.826 2.00 0.00 31.60 3.67
3772 4676 3.684788 GGCATAGTTGTTTCGATGACACT 59.315 43.478 2.00 5.97 30.64 3.55
3773 4677 4.201724 GGCATAGTTGTTTCGATGACACTC 60.202 45.833 2.00 0.46 30.64 3.51
3774 4678 4.627467 GCATAGTTGTTTCGATGACACTCT 59.373 41.667 2.00 6.61 0.00 3.24
3775 4679 5.220303 GCATAGTTGTTTCGATGACACTCTC 60.220 44.000 2.00 0.00 0.00 3.20
3776 4680 3.654414 AGTTGTTTCGATGACACTCTCC 58.346 45.455 2.00 0.00 0.00 3.71
3777 4681 3.322254 AGTTGTTTCGATGACACTCTCCT 59.678 43.478 2.00 0.00 0.00 3.69
3778 4682 4.523173 AGTTGTTTCGATGACACTCTCCTA 59.477 41.667 2.00 0.00 0.00 2.94
3779 4683 4.436242 TGTTTCGATGACACTCTCCTAC 57.564 45.455 0.00 0.00 0.00 3.18
3780 4684 3.824443 TGTTTCGATGACACTCTCCTACA 59.176 43.478 0.00 0.00 0.00 2.74
3781 4685 4.279922 TGTTTCGATGACACTCTCCTACAA 59.720 41.667 0.00 0.00 0.00 2.41
3782 4686 4.703645 TTCGATGACACTCTCCTACAAG 57.296 45.455 0.00 0.00 0.00 3.16
3783 4687 3.017442 TCGATGACACTCTCCTACAAGG 58.983 50.000 0.00 0.00 36.46 3.61
3784 4688 2.099921 CGATGACACTCTCCTACAAGGG 59.900 54.545 0.00 0.00 35.59 3.95
3785 4689 1.267121 TGACACTCTCCTACAAGGGC 58.733 55.000 0.00 0.00 35.59 5.19
3786 4690 0.173708 GACACTCTCCTACAAGGGCG 59.826 60.000 0.00 0.00 35.59 6.13
3787 4691 0.542232 ACACTCTCCTACAAGGGCGT 60.542 55.000 0.00 0.00 35.59 5.68
3788 4692 1.272313 ACACTCTCCTACAAGGGCGTA 60.272 52.381 0.00 0.00 35.59 4.42
3789 4693 1.822990 CACTCTCCTACAAGGGCGTAA 59.177 52.381 0.00 0.00 35.59 3.18
3790 4694 1.823610 ACTCTCCTACAAGGGCGTAAC 59.176 52.381 0.00 0.00 35.59 2.50
3791 4695 1.136500 CTCTCCTACAAGGGCGTAACC 59.864 57.143 0.00 0.00 35.59 2.85
3792 4696 0.179119 CTCCTACAAGGGCGTAACCG 60.179 60.000 0.00 0.00 40.62 4.44
3793 4697 1.153509 CCTACAAGGGCGTAACCGG 60.154 63.158 0.00 0.00 40.62 5.28
3794 4698 1.606885 CCTACAAGGGCGTAACCGGA 61.607 60.000 9.46 0.00 40.62 5.14
3795 4699 0.462789 CTACAAGGGCGTAACCGGAT 59.537 55.000 9.46 0.00 40.62 4.18
3796 4700 0.176219 TACAAGGGCGTAACCGGATG 59.824 55.000 9.46 0.00 40.62 3.51
3797 4701 1.817941 CAAGGGCGTAACCGGATGG 60.818 63.158 9.46 0.00 40.62 3.51
3798 4702 1.991167 AAGGGCGTAACCGGATGGA 60.991 57.895 9.46 0.00 40.62 3.41
3799 4703 1.342672 AAGGGCGTAACCGGATGGAT 61.343 55.000 9.46 0.00 40.62 3.41
3800 4704 1.147600 GGGCGTAACCGGATGGATT 59.852 57.895 9.46 0.00 40.62 3.01
3801 4705 0.393820 GGGCGTAACCGGATGGATTA 59.606 55.000 9.46 0.00 40.62 1.75
3802 4706 1.505425 GGCGTAACCGGATGGATTAC 58.495 55.000 9.46 5.01 39.21 1.89
3803 4707 1.069668 GGCGTAACCGGATGGATTACT 59.930 52.381 9.46 0.00 39.21 2.24
3804 4708 2.297033 GGCGTAACCGGATGGATTACTA 59.703 50.000 9.46 0.00 39.21 1.82
3805 4709 3.243839 GGCGTAACCGGATGGATTACTAA 60.244 47.826 9.46 0.00 39.21 2.24
3806 4710 4.562143 GGCGTAACCGGATGGATTACTAAT 60.562 45.833 9.46 0.00 39.21 1.73
3807 4711 4.992951 GCGTAACCGGATGGATTACTAATT 59.007 41.667 9.46 0.00 39.21 1.40
3808 4712 5.467735 GCGTAACCGGATGGATTACTAATTT 59.532 40.000 9.46 0.00 39.21 1.82
3809 4713 6.646240 GCGTAACCGGATGGATTACTAATTTA 59.354 38.462 9.46 0.00 39.21 1.40
3810 4714 7.148689 GCGTAACCGGATGGATTACTAATTTAG 60.149 40.741 9.46 1.79 39.21 1.85
3811 4715 7.869429 CGTAACCGGATGGATTACTAATTTAGT 59.131 37.037 9.46 13.36 39.76 2.24
3812 4716 8.985805 GTAACCGGATGGATTACTAATTTAGTG 58.014 37.037 17.47 1.55 37.97 2.74
3813 4717 7.369551 ACCGGATGGATTACTAATTTAGTGA 57.630 36.000 17.47 10.84 37.97 3.41
3814 4718 7.798071 ACCGGATGGATTACTAATTTAGTGAA 58.202 34.615 17.47 9.22 37.97 3.18
3815 4719 8.437575 ACCGGATGGATTACTAATTTAGTGAAT 58.562 33.333 17.47 12.66 37.97 2.57
3816 4720 8.936864 CCGGATGGATTACTAATTTAGTGAATC 58.063 37.037 17.47 18.12 37.18 2.52
3817 4721 8.936864 CGGATGGATTACTAATTTAGTGAATCC 58.063 37.037 26.88 26.88 42.09 3.01
3818 4722 9.232473 GGATGGATTACTAATTTAGTGAATCCC 57.768 37.037 28.31 21.68 41.68 3.85
3819 4723 9.793259 GATGGATTACTAATTTAGTGAATCCCA 57.207 33.333 28.31 22.78 41.68 4.37
3828 4732 9.252962 CTAATTTAGTGAATCCCATTTCATTGC 57.747 33.333 0.00 0.00 37.88 3.56
3829 4733 5.596836 TTAGTGAATCCCATTTCATTGCC 57.403 39.130 0.00 0.00 37.88 4.52
3830 4734 3.443052 AGTGAATCCCATTTCATTGCCA 58.557 40.909 0.00 0.00 37.88 4.92
3831 4735 4.035112 AGTGAATCCCATTTCATTGCCAT 58.965 39.130 0.00 0.00 37.88 4.40
3832 4736 5.210430 AGTGAATCCCATTTCATTGCCATA 58.790 37.500 0.00 0.00 37.88 2.74
3833 4737 5.662208 AGTGAATCCCATTTCATTGCCATAA 59.338 36.000 0.00 0.00 37.88 1.90
3834 4738 6.328148 AGTGAATCCCATTTCATTGCCATAAT 59.672 34.615 0.00 0.00 37.88 1.28
3835 4739 6.647895 GTGAATCCCATTTCATTGCCATAATC 59.352 38.462 0.00 0.00 37.88 1.75
3836 4740 4.852134 TCCCATTTCATTGCCATAATCG 57.148 40.909 0.00 0.00 0.00 3.34
3837 4741 3.573538 TCCCATTTCATTGCCATAATCGG 59.426 43.478 0.00 0.00 0.00 4.18
3845 4749 3.676091 GCCATAATCGGCGCATAAC 57.324 52.632 10.83 0.00 43.52 1.89
3846 4750 0.168128 GCCATAATCGGCGCATAACC 59.832 55.000 10.83 0.00 43.52 2.85
3847 4751 1.518325 CCATAATCGGCGCATAACCA 58.482 50.000 10.83 0.00 0.00 3.67
3848 4752 1.464608 CCATAATCGGCGCATAACCAG 59.535 52.381 10.83 0.00 0.00 4.00
3849 4753 1.464608 CATAATCGGCGCATAACCAGG 59.535 52.381 10.83 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 360 1.375396 CGATGGCCTCGGTGTTCAA 60.375 57.895 14.53 0.00 43.82 2.69
589 609 8.091449 TCGCCCAAAATATTCATTTTACTTGTT 58.909 29.630 0.00 0.00 41.41 2.83
591 611 8.472683 TTCGCCCAAAATATTCATTTTACTTG 57.527 30.769 0.00 0.00 41.41 3.16
592 612 9.665719 ATTTCGCCCAAAATATTCATTTTACTT 57.334 25.926 0.00 0.00 41.41 2.24
593 613 9.665719 AATTTCGCCCAAAATATTCATTTTACT 57.334 25.926 0.00 0.00 41.41 2.24
594 614 9.701355 CAATTTCGCCCAAAATATTCATTTTAC 57.299 29.630 0.00 0.00 41.41 2.01
595 615 9.658799 TCAATTTCGCCCAAAATATTCATTTTA 57.341 25.926 0.00 0.00 41.41 1.52
621 641 1.404047 CGGGCAAGCAATTTCGGATTT 60.404 47.619 0.00 0.00 0.00 2.17
622 642 0.173255 CGGGCAAGCAATTTCGGATT 59.827 50.000 0.00 0.00 0.00 3.01
623 643 1.666209 CCGGGCAAGCAATTTCGGAT 61.666 55.000 0.00 0.00 39.83 4.18
624 644 2.339556 CCGGGCAAGCAATTTCGGA 61.340 57.895 0.00 0.00 39.83 4.55
625 645 2.181525 CCGGGCAAGCAATTTCGG 59.818 61.111 0.00 0.00 0.00 4.30
626 646 1.154035 GACCGGGCAAGCAATTTCG 60.154 57.895 0.00 0.00 0.00 3.46
627 647 0.109132 CAGACCGGGCAAGCAATTTC 60.109 55.000 11.69 0.00 0.00 2.17
628 648 1.966762 CAGACCGGGCAAGCAATTT 59.033 52.632 11.69 0.00 0.00 1.82
629 649 2.639327 GCAGACCGGGCAAGCAATT 61.639 57.895 18.77 0.00 0.00 2.32
630 650 3.064324 GCAGACCGGGCAAGCAAT 61.064 61.111 18.77 0.00 0.00 3.56
651 671 0.038166 TGGATGGCAAGGAACTGTCC 59.962 55.000 0.00 0.00 45.35 4.02
711 731 1.732259 CGATAATATTGTGCCCGGCTC 59.268 52.381 11.61 7.85 0.00 4.70
714 734 2.223144 CACACGATAATATTGTGCCCGG 59.777 50.000 18.04 0.00 46.43 5.73
729 749 0.530288 TGCTGCTGCTATACACACGA 59.470 50.000 17.00 0.00 40.48 4.35
740 760 1.583495 TTCATGAGTGCTGCTGCTGC 61.583 55.000 22.51 22.51 40.48 5.25
758 778 1.636003 GTCTCCCCAGGGTGAGATTTT 59.364 52.381 22.82 0.00 39.63 1.82
769 789 4.394712 GGTGGCGTGTCTCCCCAG 62.395 72.222 0.00 0.00 0.00 4.45
795 815 3.803082 CCGGCGGTGTGATTGCAG 61.803 66.667 19.97 0.00 0.00 4.41
817 837 1.784358 TATTACGGCTGTAGGTGGCT 58.216 50.000 5.36 0.00 0.00 4.75
861 881 0.252696 TTCTTAGCAGGAGGGGCAGA 60.253 55.000 0.00 0.00 0.00 4.26
862 882 0.107459 GTTCTTAGCAGGAGGGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
866 886 3.634397 TCATTGTTCTTAGCAGGAGGG 57.366 47.619 0.00 0.00 0.00 4.30
868 888 4.326826 TGGTTCATTGTTCTTAGCAGGAG 58.673 43.478 0.00 0.00 0.00 3.69
916 936 0.811616 GATGGTCCAAGCTAGGCACG 60.812 60.000 0.00 0.00 0.00 5.34
927 947 0.038166 GTTGCCTTCTGGATGGTCCA 59.962 55.000 0.00 0.00 45.98 4.02
938 958 2.626780 GCTCCCGTTGGTTGCCTTC 61.627 63.158 0.00 0.00 0.00 3.46
946 966 1.738099 CTCGTCTTGCTCCCGTTGG 60.738 63.158 0.00 0.00 0.00 3.77
986 1016 1.654023 GCCCATACAAGCGGTGGAAC 61.654 60.000 0.00 0.00 34.94 3.62
1044 1074 2.618302 GCTTACCAAGGAAGGAGAACCC 60.618 54.545 0.00 0.00 36.73 4.11
1140 1170 4.399303 GTGGGTCAAATCACCTTCCAATAG 59.601 45.833 0.00 0.00 36.57 1.73
1177 1207 3.186390 GATGCCGCCCGCTTTGATC 62.186 63.158 0.00 0.00 38.78 2.92
1178 1208 3.211963 GATGCCGCCCGCTTTGAT 61.212 61.111 0.00 0.00 38.78 2.57
1179 1209 3.918253 AAGATGCCGCCCGCTTTGA 62.918 57.895 0.00 0.00 38.78 2.69
1180 1210 3.443045 AAGATGCCGCCCGCTTTG 61.443 61.111 0.00 0.00 38.78 2.77
1181 1211 3.443045 CAAGATGCCGCCCGCTTT 61.443 61.111 0.00 0.00 38.78 3.51
1183 1213 4.845580 CTCAAGATGCCGCCCGCT 62.846 66.667 0.00 0.00 38.78 5.52
1185 1215 2.892425 GACTCAAGATGCCGCCCG 60.892 66.667 0.00 0.00 0.00 6.13
1186 1216 2.892425 CGACTCAAGATGCCGCCC 60.892 66.667 0.00 0.00 0.00 6.13
1188 1218 3.567797 GCCGACTCAAGATGCCGC 61.568 66.667 0.00 0.00 0.00 6.53
1189 1219 3.257561 CGCCGACTCAAGATGCCG 61.258 66.667 0.00 0.00 0.00 5.69
1190 1220 1.447838 TTCGCCGACTCAAGATGCC 60.448 57.895 0.00 0.00 0.00 4.40
1191 1221 1.014044 TGTTCGCCGACTCAAGATGC 61.014 55.000 0.00 0.00 0.00 3.91
1193 1223 2.386661 AATGTTCGCCGACTCAAGAT 57.613 45.000 0.00 0.00 0.00 2.40
1637 2489 2.108250 ACTTTTGGGTCAGCACATACCT 59.892 45.455 0.00 0.00 35.97 3.08
1647 2499 1.453015 AGCGTGCACTTTTGGGTCA 60.453 52.632 16.19 0.00 0.00 4.02
1649 2501 3.119193 CAGCGTGCACTTTTGGGT 58.881 55.556 16.19 0.97 0.00 4.51
1656 2508 3.038417 GAAGACGCAGCGTGCACT 61.038 61.111 28.57 14.00 45.36 4.40
1658 2510 2.734723 GAGAAGACGCAGCGTGCA 60.735 61.111 28.57 0.00 45.36 4.57
1681 2533 1.688772 GGACCTCCTATAGTGTGCGA 58.311 55.000 0.00 0.00 0.00 5.10
1777 2633 7.839907 TGAGCCTAAAATTGCAAAATATCACT 58.160 30.769 1.71 0.00 0.00 3.41
1796 2652 4.192317 GGAACGTCATAGAAATTGAGCCT 58.808 43.478 0.00 0.00 0.00 4.58
1817 2673 1.341531 CCCTAGCACCTATTCTGTCGG 59.658 57.143 0.00 0.00 0.00 4.79
1818 2674 2.032620 ACCCTAGCACCTATTCTGTCG 58.967 52.381 0.00 0.00 0.00 4.35
1819 2675 4.489306 AAACCCTAGCACCTATTCTGTC 57.511 45.455 0.00 0.00 0.00 3.51
1820 2676 4.929146 AAAACCCTAGCACCTATTCTGT 57.071 40.909 0.00 0.00 0.00 3.41
1871 2731 9.595823 GCAAAAGTGATCATTAGTAGGTAGTAA 57.404 33.333 0.00 0.00 0.00 2.24
1873 2733 6.757010 CGCAAAAGTGATCATTAGTAGGTAGT 59.243 38.462 0.00 0.00 0.00 2.73
1874 2734 6.757010 ACGCAAAAGTGATCATTAGTAGGTAG 59.243 38.462 0.00 0.00 0.00 3.18
1876 2736 5.488341 ACGCAAAAGTGATCATTAGTAGGT 58.512 37.500 0.00 0.00 0.00 3.08
1877 2737 7.715265 ATACGCAAAAGTGATCATTAGTAGG 57.285 36.000 0.00 0.00 0.00 3.18
1878 2738 7.584123 GCAATACGCAAAAGTGATCATTAGTAG 59.416 37.037 0.00 0.00 41.79 2.57
2027 2915 9.639601 CAAAGGAAATTAATTAGGGAACAAGAC 57.360 33.333 0.01 0.00 0.00 3.01
2030 2918 7.967908 TGCAAAGGAAATTAATTAGGGAACAA 58.032 30.769 0.01 0.00 0.00 2.83
2056 2944 2.416431 GGCTGATCCAATGCTTGTTGTC 60.416 50.000 0.00 0.00 34.01 3.18
2057 2945 1.547372 GGCTGATCCAATGCTTGTTGT 59.453 47.619 0.00 0.00 34.01 3.32
2060 2948 3.675995 TGGCTGATCCAATGCTTGT 57.324 47.368 0.00 0.00 43.21 3.16
2069 2957 1.802960 CTTGCATACGATGGCTGATCC 59.197 52.381 0.00 0.00 0.00 3.36
2071 2959 2.874701 GTTCTTGCATACGATGGCTGAT 59.125 45.455 0.00 0.00 0.00 2.90
2079 2971 2.334971 TCGAACGTTCTTGCATACGA 57.665 45.000 24.80 12.87 40.03 3.43
2093 2985 3.768468 TTGGTTGTTTCCAGTTCGAAC 57.232 42.857 20.71 20.71 38.80 3.95
2158 3050 7.115378 GGTGAAAAACTATTTGTGATGCTCTTG 59.885 37.037 0.00 0.00 0.00 3.02
2263 3155 2.726821 TGGCTTCATGACCATTTCCTC 58.273 47.619 0.00 0.00 0.00 3.71
2264 3156 2.905415 TGGCTTCATGACCATTTCCT 57.095 45.000 0.00 0.00 0.00 3.36
2303 3195 1.066143 CCGAGCCAATACCTGTTGTCT 60.066 52.381 0.00 0.00 0.00 3.41
2348 3240 4.354939 CCCGCAAACGCATGCCAA 62.355 61.111 13.15 0.00 43.47 4.52
2387 3279 0.958382 CGAAACCCAGCGGAATTGGA 60.958 55.000 0.00 0.00 37.96 3.53
2396 3288 0.037232 AGCTACTGTCGAAACCCAGC 60.037 55.000 0.96 0.68 31.76 4.85
2419 3311 2.218673 TCCATCCTCCTACCAGAGTCT 58.781 52.381 0.00 0.00 31.53 3.24
2420 3312 2.757894 TCCATCCTCCTACCAGAGTC 57.242 55.000 0.00 0.00 31.53 3.36
2447 3339 1.855295 TCCCTAATGGCACGTACTGA 58.145 50.000 0.00 0.00 0.00 3.41
2500 3392 4.041198 TCTTGGTTCCGAAGTTAGACCAAT 59.959 41.667 8.93 0.00 46.04 3.16
2564 3456 1.065709 TGGCCCTCGAGAAACATTACC 60.066 52.381 15.71 3.73 0.00 2.85
2582 3474 0.540830 TGATGGGGAAAAACCGGTGG 60.541 55.000 8.52 0.00 40.11 4.61
2585 3477 0.039035 TCCTGATGGGGAAAAACCGG 59.961 55.000 0.00 0.00 40.11 5.28
2607 3499 0.813610 TTCCAGTGTTGCTCCACGTG 60.814 55.000 9.08 9.08 40.33 4.49
2608 3500 0.108585 ATTCCAGTGTTGCTCCACGT 59.891 50.000 0.00 0.00 40.33 4.49
2634 3526 6.551227 AGTTTTTCAGAAAGGAATACTGGCTT 59.449 34.615 0.00 0.00 33.19 4.35
2636 3528 6.332735 AGTTTTTCAGAAAGGAATACTGGC 57.667 37.500 0.00 0.00 33.19 4.85
2641 3533 5.646360 CGGGCTAGTTTTTCAGAAAGGAATA 59.354 40.000 0.00 0.00 0.00 1.75
2732 3624 2.814183 ATTGTGCGTCGTCTCCGGAC 62.814 60.000 0.00 0.00 45.36 4.79
2766 3658 2.351276 GGTGCTCACCCCGATGTT 59.649 61.111 7.82 0.00 45.68 2.71
2786 3678 0.322187 TAGTTGAAAGCGCTTCCCCC 60.322 55.000 25.24 13.30 32.53 5.40
2827 3719 0.471191 TGGATACTGCCTGCAGGATG 59.529 55.000 37.21 27.16 46.79 3.51
2856 3748 3.268032 CTGACTGGGGGCCCCTTT 61.268 66.667 40.43 27.78 45.70 3.11
2857 3749 4.617595 ACTGACTGGGGGCCCCTT 62.618 66.667 40.43 28.16 45.70 3.95
2861 3753 2.930562 AGTGACTGACTGGGGGCC 60.931 66.667 0.00 0.00 31.75 5.80
2862 3754 2.665603 GAGTGACTGACTGGGGGC 59.334 66.667 0.00 0.00 33.83 5.80
2863 3755 1.606601 TCGAGTGACTGACTGGGGG 60.607 63.158 0.00 0.00 33.83 5.40
2865 3757 1.210413 CGTCGAGTGACTGACTGGG 59.790 63.158 11.43 0.00 43.21 4.45
2867 3759 0.805614 ATCCGTCGAGTGACTGACTG 59.194 55.000 11.43 6.84 40.50 3.51
2868 3760 0.805614 CATCCGTCGAGTGACTGACT 59.194 55.000 11.43 0.00 40.50 3.41
2869 3761 0.803117 TCATCCGTCGAGTGACTGAC 59.197 55.000 0.00 0.00 40.50 3.51
2870 3762 1.671328 GATCATCCGTCGAGTGACTGA 59.329 52.381 0.00 0.00 43.21 3.41
2871 3763 1.595732 CGATCATCCGTCGAGTGACTG 60.596 57.143 0.00 0.00 43.21 3.51
2872 3764 0.658368 CGATCATCCGTCGAGTGACT 59.342 55.000 0.00 0.00 43.21 3.41
2873 3765 0.656259 TCGATCATCCGTCGAGTGAC 59.344 55.000 0.00 0.00 42.57 3.67
2874 3766 3.074594 TCGATCATCCGTCGAGTGA 57.925 52.632 0.00 0.00 42.57 3.41
2885 3777 6.371548 GCATCTAGTCTAACTCTCTCGATCAT 59.628 42.308 0.00 0.00 0.00 2.45
2894 3786 4.400884 CCACACAGCATCTAGTCTAACTCT 59.599 45.833 0.00 0.00 0.00 3.24
2949 3841 6.654582 GGGAAATACATGGAAGCAAATTTGTT 59.345 34.615 19.03 10.93 0.00 2.83
2974 3866 2.618709 AGTCGCCAACTTTGAAGGAAAG 59.381 45.455 0.00 0.00 45.87 2.62
2975 3867 2.357637 CAGTCGCCAACTTTGAAGGAAA 59.642 45.455 0.00 0.00 35.45 3.13
3033 3925 9.953697 CTGATAGAGAAAGTAACCATACACTAC 57.046 37.037 0.00 0.00 34.29 2.73
3041 3933 6.665992 ACACACTGATAGAGAAAGTAACCA 57.334 37.500 0.00 0.00 0.00 3.67
3061 3954 2.356695 GGTGTTACAGGGTTGTGAACAC 59.643 50.000 16.17 16.17 42.75 3.32
3063 3956 2.645802 TGGTGTTACAGGGTTGTGAAC 58.354 47.619 0.00 0.00 38.23 3.18
3108 4001 2.159517 GGTGAGAATGGACGATGCAAAC 60.160 50.000 0.00 0.00 0.00 2.93
3118 4011 2.231964 GCAAATGCAAGGTGAGAATGGA 59.768 45.455 0.00 0.00 41.59 3.41
3143 4036 9.931210 GTAACTTGTATTACAAATAGGACATGC 57.069 33.333 10.32 0.00 37.69 4.06
3152 4045 7.827729 GTCCCAGGAGTAACTTGTATTACAAAT 59.172 37.037 10.32 0.00 37.69 2.32
3156 4049 6.070938 AGTGTCCCAGGAGTAACTTGTATTAC 60.071 42.308 0.00 0.00 35.62 1.89
3320 4224 5.186797 TCTCCTTGAACACCACAACAATTTT 59.813 36.000 0.00 0.00 0.00 1.82
3335 4239 1.555075 AGTTAGGCGCATCTCCTTGAA 59.445 47.619 10.83 0.00 35.21 2.69
3348 4252 4.503741 TTCAATCAAACAGCAGTTAGGC 57.496 40.909 0.00 0.00 36.84 3.93
3368 4272 3.901844 ACGTATATGGTGGCCTGTCTATT 59.098 43.478 3.32 0.00 0.00 1.73
3404 4308 9.265901 GCATACAGAAGATATCAACTAACATGT 57.734 33.333 5.32 0.00 0.00 3.21
3405 4309 9.264719 TGCATACAGAAGATATCAACTAACATG 57.735 33.333 5.32 0.00 0.00 3.21
3406 4310 9.836864 TTGCATACAGAAGATATCAACTAACAT 57.163 29.630 5.32 0.00 0.00 2.71
3407 4311 9.665719 TTTGCATACAGAAGATATCAACTAACA 57.334 29.630 5.32 0.00 0.00 2.41
3414 4318 8.347771 GCAGAATTTTGCATACAGAAGATATCA 58.652 33.333 15.61 0.00 43.53 2.15
3415 4319 8.725212 GCAGAATTTTGCATACAGAAGATATC 57.275 34.615 15.61 0.00 43.53 1.63
3429 4333 5.403466 CCAAAAGACTAGTGCAGAATTTTGC 59.597 40.000 13.79 13.79 44.33 3.68
3430 4334 6.507023 ACCAAAAGACTAGTGCAGAATTTTG 58.493 36.000 0.00 7.82 39.81 2.44
3431 4335 6.715347 ACCAAAAGACTAGTGCAGAATTTT 57.285 33.333 0.00 0.00 0.00 1.82
3432 4336 8.409358 AATACCAAAAGACTAGTGCAGAATTT 57.591 30.769 0.00 0.00 0.00 1.82
3433 4337 9.686683 ATAATACCAAAAGACTAGTGCAGAATT 57.313 29.630 0.00 0.00 0.00 2.17
3434 4338 9.686683 AATAATACCAAAAGACTAGTGCAGAAT 57.313 29.630 0.00 0.00 0.00 2.40
3436 4340 9.817809 CTAATAATACCAAAAGACTAGTGCAGA 57.182 33.333 0.00 0.00 0.00 4.26
3437 4341 9.046296 CCTAATAATACCAAAAGACTAGTGCAG 57.954 37.037 0.00 0.00 0.00 4.41
3438 4342 8.764558 TCCTAATAATACCAAAAGACTAGTGCA 58.235 33.333 0.00 0.00 0.00 4.57
3439 4343 9.043079 GTCCTAATAATACCAAAAGACTAGTGC 57.957 37.037 0.00 0.00 0.00 4.40
3444 4348 8.989131 TGCTAGTCCTAATAATACCAAAAGACT 58.011 33.333 0.00 0.00 36.18 3.24
3445 4349 9.043079 GTGCTAGTCCTAATAATACCAAAAGAC 57.957 37.037 0.00 0.00 0.00 3.01
3446 4350 8.764558 TGTGCTAGTCCTAATAATACCAAAAGA 58.235 33.333 0.00 0.00 0.00 2.52
3447 4351 8.958119 TGTGCTAGTCCTAATAATACCAAAAG 57.042 34.615 0.00 0.00 0.00 2.27
3469 4373 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
3470 4374 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
3471 4375 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
3472 4376 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
3473 4377 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
3474 4378 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3484 4388 6.779115 AAAATAAAAATCTCCCGTTGCAAC 57.221 33.333 19.89 19.89 0.00 4.17
3485 4389 6.293135 GCAAAAATAAAAATCTCCCGTTGCAA 60.293 34.615 0.00 0.00 37.99 4.08
3486 4390 5.178438 GCAAAAATAAAAATCTCCCGTTGCA 59.822 36.000 0.00 0.00 37.99 4.08
3487 4391 5.178438 TGCAAAAATAAAAATCTCCCGTTGC 59.822 36.000 0.00 0.00 38.43 4.17
3488 4392 6.777526 TGCAAAAATAAAAATCTCCCGTTG 57.222 33.333 0.00 0.00 0.00 4.10
3489 4393 7.213678 TCTTGCAAAAATAAAAATCTCCCGTT 58.786 30.769 0.00 0.00 0.00 4.44
3490 4394 6.754193 TCTTGCAAAAATAAAAATCTCCCGT 58.246 32.000 0.00 0.00 0.00 5.28
3491 4395 7.622048 GCTTCTTGCAAAAATAAAAATCTCCCG 60.622 37.037 0.00 0.00 42.31 5.14
3492 4396 7.521529 GCTTCTTGCAAAAATAAAAATCTCCC 58.478 34.615 0.00 0.00 42.31 4.30
3509 4413 0.929615 GCTCTCTCGATGCTTCTTGC 59.070 55.000 0.00 0.00 43.25 4.01
3510 4414 2.582728 AGCTCTCTCGATGCTTCTTG 57.417 50.000 0.00 0.00 32.61 3.02
3511 4415 4.935352 ATTAGCTCTCTCGATGCTTCTT 57.065 40.909 0.00 0.00 38.15 2.52
3512 4416 4.340666 TCAATTAGCTCTCTCGATGCTTCT 59.659 41.667 0.00 0.00 38.15 2.85
3513 4417 4.615949 TCAATTAGCTCTCTCGATGCTTC 58.384 43.478 0.00 0.00 38.15 3.86
3514 4418 4.662468 TCAATTAGCTCTCTCGATGCTT 57.338 40.909 0.00 0.00 38.15 3.91
3515 4419 4.039004 ACATCAATTAGCTCTCTCGATGCT 59.961 41.667 11.05 7.35 40.43 3.79
3516 4420 4.150274 CACATCAATTAGCTCTCTCGATGC 59.850 45.833 11.05 0.00 33.68 3.91
3517 4421 5.288015 ACACATCAATTAGCTCTCTCGATG 58.712 41.667 0.00 0.13 35.90 3.84
3518 4422 5.508825 GGACACATCAATTAGCTCTCTCGAT 60.509 44.000 0.00 0.00 0.00 3.59
3519 4423 4.202060 GGACACATCAATTAGCTCTCTCGA 60.202 45.833 0.00 0.00 0.00 4.04
3520 4424 4.047822 GGACACATCAATTAGCTCTCTCG 58.952 47.826 0.00 0.00 0.00 4.04
3521 4425 5.016051 TGGACACATCAATTAGCTCTCTC 57.984 43.478 0.00 0.00 0.00 3.20
3522 4426 5.627182 ATGGACACATCAATTAGCTCTCT 57.373 39.130 0.00 0.00 29.20 3.10
3535 4439 4.019174 GGAGACCATTTTGATGGACACAT 58.981 43.478 12.12 0.00 44.39 3.21
3536 4440 3.420893 GGAGACCATTTTGATGGACACA 58.579 45.455 12.12 0.00 44.39 3.72
3537 4441 2.420022 CGGAGACCATTTTGATGGACAC 59.580 50.000 12.12 4.89 44.39 3.67
3538 4442 2.710377 CGGAGACCATTTTGATGGACA 58.290 47.619 12.12 0.00 44.39 4.02
3539 4443 1.401905 GCGGAGACCATTTTGATGGAC 59.598 52.381 12.12 6.15 44.39 4.02
3540 4444 1.004161 TGCGGAGACCATTTTGATGGA 59.996 47.619 12.12 0.00 44.39 3.41
3541 4445 1.402968 CTGCGGAGACCATTTTGATGG 59.597 52.381 0.00 3.95 46.92 3.51
3542 4446 1.202222 GCTGCGGAGACCATTTTGATG 60.202 52.381 8.65 0.00 0.00 3.07
3543 4447 1.098050 GCTGCGGAGACCATTTTGAT 58.902 50.000 8.65 0.00 0.00 2.57
3544 4448 1.298157 CGCTGCGGAGACCATTTTGA 61.298 55.000 15.40 0.00 0.00 2.69
3545 4449 1.135315 CGCTGCGGAGACCATTTTG 59.865 57.895 15.40 0.00 0.00 2.44
3546 4450 3.578456 CGCTGCGGAGACCATTTT 58.422 55.556 15.40 0.00 0.00 1.82
3559 4463 3.506059 CTATGTCGCCCCTCCGCTG 62.506 68.421 0.00 0.00 0.00 5.18
3560 4464 3.227276 CTATGTCGCCCCTCCGCT 61.227 66.667 0.00 0.00 0.00 5.52
3561 4465 4.971125 GCTATGTCGCCCCTCCGC 62.971 72.222 0.00 0.00 0.00 5.54
3562 4466 4.647615 CGCTATGTCGCCCCTCCG 62.648 72.222 0.00 0.00 0.00 4.63
3563 4467 2.701163 CTTCGCTATGTCGCCCCTCC 62.701 65.000 0.00 0.00 0.00 4.30
3564 4468 1.300233 CTTCGCTATGTCGCCCCTC 60.300 63.158 0.00 0.00 0.00 4.30
3565 4469 1.739338 CTCTTCGCTATGTCGCCCCT 61.739 60.000 0.00 0.00 0.00 4.79
3566 4470 1.300233 CTCTTCGCTATGTCGCCCC 60.300 63.158 0.00 0.00 0.00 5.80
3567 4471 0.179108 AACTCTTCGCTATGTCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
3568 4472 0.924090 CAACTCTTCGCTATGTCGCC 59.076 55.000 0.00 0.00 0.00 5.54
3569 4473 0.299003 GCAACTCTTCGCTATGTCGC 59.701 55.000 0.00 0.00 0.00 5.19
3570 4474 0.567968 CGCAACTCTTCGCTATGTCG 59.432 55.000 0.00 0.00 0.00 4.35
3571 4475 0.924090 CCGCAACTCTTCGCTATGTC 59.076 55.000 0.00 0.00 0.00 3.06
3572 4476 0.246635 ACCGCAACTCTTCGCTATGT 59.753 50.000 0.00 0.00 0.00 2.29
3573 4477 0.647410 CACCGCAACTCTTCGCTATG 59.353 55.000 0.00 0.00 0.00 2.23
3574 4478 0.246635 ACACCGCAACTCTTCGCTAT 59.753 50.000 0.00 0.00 0.00 2.97
3575 4479 0.032952 AACACCGCAACTCTTCGCTA 59.967 50.000 0.00 0.00 0.00 4.26
3576 4480 1.222115 GAACACCGCAACTCTTCGCT 61.222 55.000 0.00 0.00 0.00 4.93
3577 4481 1.204312 GAACACCGCAACTCTTCGC 59.796 57.895 0.00 0.00 0.00 4.70
3578 4482 1.566018 GGGAACACCGCAACTCTTCG 61.566 60.000 0.00 0.00 0.00 3.79
3579 4483 0.534203 TGGGAACACCGCAACTCTTC 60.534 55.000 0.00 0.00 44.64 2.87
3580 4484 1.529796 TGGGAACACCGCAACTCTT 59.470 52.632 0.00 0.00 44.64 2.85
3581 4485 3.236391 TGGGAACACCGCAACTCT 58.764 55.556 0.00 0.00 44.64 3.24
3591 4495 0.183971 AAACATGACCCGTGGGAACA 59.816 50.000 13.01 11.56 38.96 3.18
3592 4496 0.596082 CAAACATGACCCGTGGGAAC 59.404 55.000 13.01 5.97 38.96 3.62
3593 4497 0.538516 CCAAACATGACCCGTGGGAA 60.539 55.000 13.01 0.00 38.96 3.97
3594 4498 1.074072 CCAAACATGACCCGTGGGA 59.926 57.895 13.01 0.00 38.96 4.37
3595 4499 2.635443 GCCAAACATGACCCGTGGG 61.635 63.158 2.58 2.58 42.03 4.61
3596 4500 2.635443 GGCCAAACATGACCCGTGG 61.635 63.158 0.00 0.06 0.00 4.94
3597 4501 2.635443 GGGCCAAACATGACCCGTG 61.635 63.158 4.39 0.00 31.32 4.94
3598 4502 2.282887 GGGCCAAACATGACCCGT 60.283 61.111 4.39 0.00 31.32 5.28
3600 4504 3.758931 GCGGGCCAAACATGACCC 61.759 66.667 4.39 0.98 39.12 4.46
3601 4505 4.114997 CGCGGGCCAAACATGACC 62.115 66.667 4.39 0.00 0.00 4.02
3602 4506 3.039202 CTCGCGGGCCAAACATGAC 62.039 63.158 6.13 0.00 0.00 3.06
3603 4507 2.535485 ATCTCGCGGGCCAAACATGA 62.535 55.000 6.13 0.00 0.00 3.07
3604 4508 2.051804 GATCTCGCGGGCCAAACATG 62.052 60.000 6.13 0.00 0.00 3.21
3605 4509 1.819632 GATCTCGCGGGCCAAACAT 60.820 57.895 6.13 0.00 0.00 2.71
3606 4510 2.435938 GATCTCGCGGGCCAAACA 60.436 61.111 6.13 0.00 0.00 2.83
3607 4511 1.706287 GAAGATCTCGCGGGCCAAAC 61.706 60.000 6.13 0.00 0.00 2.93
3608 4512 1.449601 GAAGATCTCGCGGGCCAAA 60.450 57.895 6.13 0.00 0.00 3.28
3609 4513 1.971505 ATGAAGATCTCGCGGGCCAA 61.972 55.000 6.13 0.00 0.00 4.52
3610 4514 1.112916 TATGAAGATCTCGCGGGCCA 61.113 55.000 6.13 0.00 0.00 5.36
3611 4515 0.389166 CTATGAAGATCTCGCGGGCC 60.389 60.000 6.13 0.00 0.00 5.80
3612 4516 0.315568 ACTATGAAGATCTCGCGGGC 59.684 55.000 6.13 0.00 0.00 6.13
3613 4517 1.336332 CCACTATGAAGATCTCGCGGG 60.336 57.143 6.13 1.01 0.00 6.13
3614 4518 1.338337 ACCACTATGAAGATCTCGCGG 59.662 52.381 6.13 0.00 0.00 6.46
3615 4519 2.389059 CACCACTATGAAGATCTCGCG 58.611 52.381 0.00 0.00 0.00 5.87
3616 4520 2.546795 CCCACCACTATGAAGATCTCGC 60.547 54.545 0.00 0.00 0.00 5.03
3617 4521 2.036475 CCCCACCACTATGAAGATCTCG 59.964 54.545 0.00 0.00 0.00 4.04
3618 4522 3.041946 ACCCCACCACTATGAAGATCTC 58.958 50.000 0.00 0.00 0.00 2.75
3619 4523 3.136641 ACCCCACCACTATGAAGATCT 57.863 47.619 0.00 0.00 0.00 2.75
3620 4524 3.545703 CAACCCCACCACTATGAAGATC 58.454 50.000 0.00 0.00 0.00 2.75
3621 4525 2.242196 CCAACCCCACCACTATGAAGAT 59.758 50.000 0.00 0.00 0.00 2.40
3622 4526 1.633432 CCAACCCCACCACTATGAAGA 59.367 52.381 0.00 0.00 0.00 2.87
3623 4527 1.354368 ACCAACCCCACCACTATGAAG 59.646 52.381 0.00 0.00 0.00 3.02
3624 4528 1.353022 GACCAACCCCACCACTATGAA 59.647 52.381 0.00 0.00 0.00 2.57
3625 4529 0.988832 GACCAACCCCACCACTATGA 59.011 55.000 0.00 0.00 0.00 2.15
3626 4530 0.695924 TGACCAACCCCACCACTATG 59.304 55.000 0.00 0.00 0.00 2.23
3627 4531 0.991920 CTGACCAACCCCACCACTAT 59.008 55.000 0.00 0.00 0.00 2.12
3628 4532 0.400815 ACTGACCAACCCCACCACTA 60.401 55.000 0.00 0.00 0.00 2.74
3629 4533 1.696314 ACTGACCAACCCCACCACT 60.696 57.895 0.00 0.00 0.00 4.00
3630 4534 1.528309 CACTGACCAACCCCACCAC 60.528 63.158 0.00 0.00 0.00 4.16
3631 4535 2.004120 ACACTGACCAACCCCACCA 61.004 57.895 0.00 0.00 0.00 4.17
3632 4536 1.528309 CACACTGACCAACCCCACC 60.528 63.158 0.00 0.00 0.00 4.61
3633 4537 1.528309 CCACACTGACCAACCCCAC 60.528 63.158 0.00 0.00 0.00 4.61
3634 4538 2.004120 ACCACACTGACCAACCCCA 61.004 57.895 0.00 0.00 0.00 4.96
3635 4539 1.528309 CACCACACTGACCAACCCC 60.528 63.158 0.00 0.00 0.00 4.95
3636 4540 1.528309 CCACCACACTGACCAACCC 60.528 63.158 0.00 0.00 0.00 4.11
3637 4541 1.528309 CCCACCACACTGACCAACC 60.528 63.158 0.00 0.00 0.00 3.77
3638 4542 2.193536 GCCCACCACACTGACCAAC 61.194 63.158 0.00 0.00 0.00 3.77
3639 4543 2.194597 GCCCACCACACTGACCAA 59.805 61.111 0.00 0.00 0.00 3.67
3640 4544 3.093172 TGCCCACCACACTGACCA 61.093 61.111 0.00 0.00 0.00 4.02
3641 4545 2.594592 GTGCCCACCACACTGACC 60.595 66.667 0.00 0.00 44.06 4.02
3652 4556 2.425592 CGAGTTGAGTGGTGCCCA 59.574 61.111 0.00 0.00 0.00 5.36
3653 4557 3.050275 GCGAGTTGAGTGGTGCCC 61.050 66.667 0.00 0.00 0.00 5.36
3654 4558 3.414700 CGCGAGTTGAGTGGTGCC 61.415 66.667 0.00 0.00 0.00 5.01
3655 4559 4.077188 GCGCGAGTTGAGTGGTGC 62.077 66.667 12.10 0.00 0.00 5.01
3656 4560 3.414700 GGCGCGAGTTGAGTGGTG 61.415 66.667 12.10 0.00 0.00 4.17
3657 4561 4.681978 GGGCGCGAGTTGAGTGGT 62.682 66.667 12.10 0.00 0.00 4.16
3658 4562 3.883744 AAGGGCGCGAGTTGAGTGG 62.884 63.158 12.10 0.00 0.00 4.00
3659 4563 1.507141 AAAAGGGCGCGAGTTGAGTG 61.507 55.000 12.10 0.00 0.00 3.51
3660 4564 0.818040 AAAAAGGGCGCGAGTTGAGT 60.818 50.000 12.10 0.00 0.00 3.41
3661 4565 1.949257 AAAAAGGGCGCGAGTTGAG 59.051 52.632 12.10 0.00 0.00 3.02
3662 4566 4.150994 AAAAAGGGCGCGAGTTGA 57.849 50.000 12.10 0.00 0.00 3.18
3688 4592 3.352338 CTACACACGGAGGCGGACC 62.352 68.421 0.00 0.00 0.00 4.46
3689 4593 2.181021 CTACACACGGAGGCGGAC 59.819 66.667 0.00 0.00 0.00 4.79
3690 4594 3.066190 CCTACACACGGAGGCGGA 61.066 66.667 0.00 0.00 0.00 5.54
3691 4595 1.597797 TAACCTACACACGGAGGCGG 61.598 60.000 0.00 0.00 36.17 6.13
3692 4596 0.179145 CTAACCTACACACGGAGGCG 60.179 60.000 0.00 0.00 36.17 5.52
3693 4597 0.175073 CCTAACCTACACACGGAGGC 59.825 60.000 0.00 0.00 36.17 4.70
3694 4598 1.553706 ACCTAACCTACACACGGAGG 58.446 55.000 0.00 0.00 38.92 4.30
3695 4599 2.929592 GCAACCTAACCTACACACGGAG 60.930 54.545 0.00 0.00 0.00 4.63
3696 4600 1.001181 GCAACCTAACCTACACACGGA 59.999 52.381 0.00 0.00 0.00 4.69
3697 4601 1.435577 GCAACCTAACCTACACACGG 58.564 55.000 0.00 0.00 0.00 4.94
3698 4602 1.001633 AGGCAACCTAACCTACACACG 59.998 52.381 0.00 0.00 33.38 4.49
3699 4603 2.423577 CAGGCAACCTAACCTACACAC 58.576 52.381 0.00 0.00 33.38 3.82
3700 4604 1.271163 GCAGGCAACCTAACCTACACA 60.271 52.381 0.00 0.00 33.38 3.72
3701 4605 1.003233 AGCAGGCAACCTAACCTACAC 59.997 52.381 0.00 0.00 33.38 2.90
3702 4606 1.278127 GAGCAGGCAACCTAACCTACA 59.722 52.381 0.00 0.00 33.38 2.74
3703 4607 1.278127 TGAGCAGGCAACCTAACCTAC 59.722 52.381 0.00 0.00 33.38 3.18
3704 4608 1.651737 TGAGCAGGCAACCTAACCTA 58.348 50.000 0.00 0.00 33.38 3.08
3705 4609 0.995024 ATGAGCAGGCAACCTAACCT 59.005 50.000 0.00 0.00 36.45 3.50
3706 4610 1.839424 AATGAGCAGGCAACCTAACC 58.161 50.000 0.00 0.00 29.64 2.85
3707 4611 3.005791 ACAAAATGAGCAGGCAACCTAAC 59.994 43.478 0.00 0.00 29.64 2.34
3708 4612 3.005684 CACAAAATGAGCAGGCAACCTAA 59.994 43.478 0.00 0.00 29.64 2.69
3709 4613 2.557924 CACAAAATGAGCAGGCAACCTA 59.442 45.455 0.00 0.00 29.64 3.08
3710 4614 1.342174 CACAAAATGAGCAGGCAACCT 59.658 47.619 0.00 0.00 37.17 3.50
3711 4615 1.606224 CCACAAAATGAGCAGGCAACC 60.606 52.381 0.00 0.00 37.17 3.77
3712 4616 1.787012 CCACAAAATGAGCAGGCAAC 58.213 50.000 0.00 0.00 0.00 4.17
3713 4617 0.033781 GCCACAAAATGAGCAGGCAA 59.966 50.000 0.00 0.00 41.63 4.52
3714 4618 0.828762 AGCCACAAAATGAGCAGGCA 60.829 50.000 0.00 0.00 44.34 4.75
3715 4619 0.389426 CAGCCACAAAATGAGCAGGC 60.389 55.000 0.00 0.00 42.31 4.85
3716 4620 0.389426 GCAGCCACAAAATGAGCAGG 60.389 55.000 0.00 0.00 0.00 4.85
3717 4621 0.315886 TGCAGCCACAAAATGAGCAG 59.684 50.000 0.00 0.00 0.00 4.24
3718 4622 0.032403 GTGCAGCCACAAAATGAGCA 59.968 50.000 0.00 0.00 41.67 4.26
3719 4623 1.005294 CGTGCAGCCACAAAATGAGC 61.005 55.000 0.00 0.00 42.17 4.26
3720 4624 0.387622 CCGTGCAGCCACAAAATGAG 60.388 55.000 0.00 0.00 42.17 2.90
3721 4625 1.106351 ACCGTGCAGCCACAAAATGA 61.106 50.000 0.00 0.00 42.17 2.57
3722 4626 0.940519 CACCGTGCAGCCACAAAATG 60.941 55.000 0.00 0.00 42.17 2.32
3723 4627 1.106351 TCACCGTGCAGCCACAAAAT 61.106 50.000 0.00 0.00 42.17 1.82
3724 4628 1.750780 TCACCGTGCAGCCACAAAA 60.751 52.632 0.00 0.00 42.17 2.44
3725 4629 2.124529 TCACCGTGCAGCCACAAA 60.125 55.556 0.00 0.00 42.17 2.83
3726 4630 2.899838 GTCACCGTGCAGCCACAA 60.900 61.111 0.00 0.00 42.17 3.33
3727 4631 4.927782 GGTCACCGTGCAGCCACA 62.928 66.667 0.00 0.00 42.17 4.17
3728 4632 4.626081 AGGTCACCGTGCAGCCAC 62.626 66.667 0.00 0.00 38.62 5.01
3729 4633 3.825160 GAAGGTCACCGTGCAGCCA 62.825 63.158 0.00 0.00 0.00 4.75
3730 4634 3.050275 GAAGGTCACCGTGCAGCC 61.050 66.667 0.00 0.00 0.00 4.85
3731 4635 3.414700 CGAAGGTCACCGTGCAGC 61.415 66.667 0.00 0.00 0.00 5.25
3744 4648 1.396996 CGAAACAACTATGCCCCGAAG 59.603 52.381 0.00 0.00 0.00 3.79
3745 4649 1.002201 TCGAAACAACTATGCCCCGAA 59.998 47.619 0.00 0.00 0.00 4.30
3746 4650 0.609151 TCGAAACAACTATGCCCCGA 59.391 50.000 0.00 0.00 0.00 5.14
3747 4651 1.330521 CATCGAAACAACTATGCCCCG 59.669 52.381 0.00 0.00 0.00 5.73
3748 4652 2.354821 GTCATCGAAACAACTATGCCCC 59.645 50.000 0.00 0.00 0.00 5.80
3749 4653 3.006940 TGTCATCGAAACAACTATGCCC 58.993 45.455 1.82 0.00 0.00 5.36
3750 4654 3.684788 AGTGTCATCGAAACAACTATGCC 59.315 43.478 5.66 0.00 0.00 4.40
3751 4655 4.627467 AGAGTGTCATCGAAACAACTATGC 59.373 41.667 5.66 0.00 0.00 3.14
3752 4656 5.289675 GGAGAGTGTCATCGAAACAACTATG 59.710 44.000 5.66 0.00 0.00 2.23
3753 4657 5.186021 AGGAGAGTGTCATCGAAACAACTAT 59.814 40.000 5.66 4.01 0.00 2.12
3754 4658 4.523173 AGGAGAGTGTCATCGAAACAACTA 59.477 41.667 5.66 0.00 0.00 2.24
3755 4659 3.322254 AGGAGAGTGTCATCGAAACAACT 59.678 43.478 5.66 8.23 0.00 3.16
3756 4660 3.654414 AGGAGAGTGTCATCGAAACAAC 58.346 45.455 5.66 4.31 0.00 3.32
3757 4661 4.279922 TGTAGGAGAGTGTCATCGAAACAA 59.720 41.667 5.66 0.00 0.00 2.83
3758 4662 3.824443 TGTAGGAGAGTGTCATCGAAACA 59.176 43.478 0.00 0.00 0.00 2.83
3759 4663 4.436242 TGTAGGAGAGTGTCATCGAAAC 57.564 45.455 0.00 0.00 0.00 2.78
3760 4664 4.082190 CCTTGTAGGAGAGTGTCATCGAAA 60.082 45.833 0.00 0.00 37.67 3.46
3761 4665 3.444034 CCTTGTAGGAGAGTGTCATCGAA 59.556 47.826 0.00 0.00 37.67 3.71
3762 4666 3.017442 CCTTGTAGGAGAGTGTCATCGA 58.983 50.000 0.00 0.00 37.67 3.59
3763 4667 2.099921 CCCTTGTAGGAGAGTGTCATCG 59.900 54.545 0.00 0.00 37.67 3.84
3764 4668 2.159028 GCCCTTGTAGGAGAGTGTCATC 60.159 54.545 0.00 0.00 37.67 2.92
3765 4669 1.834263 GCCCTTGTAGGAGAGTGTCAT 59.166 52.381 0.00 0.00 37.67 3.06
3766 4670 1.267121 GCCCTTGTAGGAGAGTGTCA 58.733 55.000 0.00 0.00 37.67 3.58
3767 4671 0.173708 CGCCCTTGTAGGAGAGTGTC 59.826 60.000 0.00 0.00 37.67 3.67
3768 4672 0.542232 ACGCCCTTGTAGGAGAGTGT 60.542 55.000 0.00 0.00 37.67 3.55
3769 4673 1.471119 TACGCCCTTGTAGGAGAGTG 58.529 55.000 0.00 0.00 37.67 3.51
3770 4674 1.823610 GTTACGCCCTTGTAGGAGAGT 59.176 52.381 0.00 0.00 37.67 3.24
3771 4675 1.136500 GGTTACGCCCTTGTAGGAGAG 59.864 57.143 0.00 0.00 37.67 3.20
3772 4676 1.188863 GGTTACGCCCTTGTAGGAGA 58.811 55.000 0.00 0.00 37.67 3.71
3773 4677 0.179119 CGGTTACGCCCTTGTAGGAG 60.179 60.000 0.00 0.00 37.67 3.69
3774 4678 1.606885 CCGGTTACGCCCTTGTAGGA 61.607 60.000 0.00 0.00 36.67 2.94
3775 4679 1.153509 CCGGTTACGCCCTTGTAGG 60.154 63.158 0.00 0.00 39.22 3.18
3776 4680 0.462789 ATCCGGTTACGCCCTTGTAG 59.537 55.000 0.00 0.00 39.22 2.74
3777 4681 0.176219 CATCCGGTTACGCCCTTGTA 59.824 55.000 0.00 0.00 39.22 2.41
3778 4682 1.078708 CATCCGGTTACGCCCTTGT 60.079 57.895 0.00 0.00 39.22 3.16
3779 4683 1.817941 CCATCCGGTTACGCCCTTG 60.818 63.158 0.00 0.00 39.22 3.61
3780 4684 1.342672 ATCCATCCGGTTACGCCCTT 61.343 55.000 0.00 0.00 39.22 3.95
3781 4685 1.342672 AATCCATCCGGTTACGCCCT 61.343 55.000 0.00 0.00 39.22 5.19
3782 4686 0.393820 TAATCCATCCGGTTACGCCC 59.606 55.000 0.00 0.00 39.22 6.13
3783 4687 1.069668 AGTAATCCATCCGGTTACGCC 59.930 52.381 0.00 0.00 39.22 5.68
3784 4688 2.521105 AGTAATCCATCCGGTTACGC 57.479 50.000 0.00 0.00 39.22 4.42
3785 4689 7.869429 ACTAAATTAGTAATCCATCCGGTTACG 59.131 37.037 3.48 0.00 37.23 3.18
3786 4690 8.985805 CACTAAATTAGTAATCCATCCGGTTAC 58.014 37.037 5.23 2.22 37.23 2.50
3787 4691 8.926374 TCACTAAATTAGTAATCCATCCGGTTA 58.074 33.333 5.23 0.00 37.23 2.85
3788 4692 7.798071 TCACTAAATTAGTAATCCATCCGGTT 58.202 34.615 5.23 0.00 37.23 4.44
3789 4693 7.369551 TCACTAAATTAGTAATCCATCCGGT 57.630 36.000 5.23 0.00 37.23 5.28
3790 4694 8.848474 ATTCACTAAATTAGTAATCCATCCGG 57.152 34.615 5.23 0.00 37.23 5.14
3791 4695 8.936864 GGATTCACTAAATTAGTAATCCATCCG 58.063 37.037 27.04 10.17 41.80 4.18
3792 4696 9.232473 GGGATTCACTAAATTAGTAATCCATCC 57.768 37.037 29.46 22.52 42.66 3.51
3793 4697 9.793259 TGGGATTCACTAAATTAGTAATCCATC 57.207 33.333 29.46 22.04 42.66 3.51
3802 4706 9.252962 GCAATGAAATGGGATTCACTAAATTAG 57.747 33.333 0.00 0.00 41.78 1.73
3803 4707 8.203485 GGCAATGAAATGGGATTCACTAAATTA 58.797 33.333 0.00 0.00 41.78 1.40
3804 4708 7.049754 GGCAATGAAATGGGATTCACTAAATT 58.950 34.615 0.00 0.00 41.78 1.82
3805 4709 6.156602 TGGCAATGAAATGGGATTCACTAAAT 59.843 34.615 0.00 0.00 41.78 1.40
3806 4710 5.483231 TGGCAATGAAATGGGATTCACTAAA 59.517 36.000 0.00 0.00 41.78 1.85
3807 4711 5.022122 TGGCAATGAAATGGGATTCACTAA 58.978 37.500 0.00 0.00 41.78 2.24
3808 4712 4.608269 TGGCAATGAAATGGGATTCACTA 58.392 39.130 0.00 0.00 41.78 2.74
3809 4713 3.443052 TGGCAATGAAATGGGATTCACT 58.557 40.909 0.00 0.00 41.78 3.41
3810 4714 3.891422 TGGCAATGAAATGGGATTCAC 57.109 42.857 0.00 0.00 41.78 3.18
3811 4715 6.517027 CGATTATGGCAATGAAATGGGATTCA 60.517 38.462 0.00 0.00 43.03 2.57
3812 4716 5.865552 CGATTATGGCAATGAAATGGGATTC 59.134 40.000 0.00 0.00 0.00 2.52
3813 4717 5.279607 CCGATTATGGCAATGAAATGGGATT 60.280 40.000 0.00 0.00 31.09 3.01
3814 4718 4.221262 CCGATTATGGCAATGAAATGGGAT 59.779 41.667 0.00 0.00 31.09 3.85
3815 4719 3.573538 CCGATTATGGCAATGAAATGGGA 59.426 43.478 0.00 0.00 31.09 4.37
3816 4720 3.916761 CCGATTATGGCAATGAAATGGG 58.083 45.455 0.00 0.00 0.00 4.00
3828 4732 1.464608 CTGGTTATGCGCCGATTATGG 59.535 52.381 4.18 0.00 0.00 2.74
3829 4733 1.464608 CCTGGTTATGCGCCGATTATG 59.535 52.381 4.18 0.00 0.00 1.90
3830 4734 1.808411 CCTGGTTATGCGCCGATTAT 58.192 50.000 4.18 0.00 0.00 1.28
3831 4735 3.299050 CCTGGTTATGCGCCGATTA 57.701 52.632 4.18 0.00 0.00 1.75
3832 4736 4.141144 CCTGGTTATGCGCCGATT 57.859 55.556 4.18 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.