Multiple sequence alignment - TraesCS7A01G068900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G068900 chr7A 100.000 4244 0 0 1 4244 35004035 34999792 0.000000e+00 7838
1 TraesCS7A01G068900 chr7A 90.727 1100 76 4 2237 3310 34744480 34745579 0.000000e+00 1443
2 TraesCS7A01G068900 chr7A 87.686 942 50 21 3354 4244 34745589 34746515 0.000000e+00 1037
3 TraesCS7A01G068900 chr7A 87.679 909 41 26 3374 4240 34963750 34962871 0.000000e+00 992
4 TraesCS7A01G068900 chr7A 87.384 753 66 16 1003 1753 34743407 34744132 0.000000e+00 837
5 TraesCS7A01G068900 chr7A 86.755 151 14 3 601 751 413832112 413831968 3.400000e-36 163
6 TraesCS7A01G068900 chr7A 90.991 111 9 1 1 111 35003861 35003752 9.510000e-32 148
7 TraesCS7A01G068900 chr4A 91.996 2024 79 30 2213 4189 690412737 690414724 0.000000e+00 2763
8 TraesCS7A01G068900 chr4A 91.592 2022 106 25 2213 4189 690620250 690618248 0.000000e+00 2734
9 TraesCS7A01G068900 chr4A 88.860 772 59 14 997 1753 690409525 690410284 0.000000e+00 924
10 TraesCS7A01G068900 chr4A 87.436 780 46 23 995 1753 690623588 690622840 0.000000e+00 850
11 TraesCS7A01G068900 chr4A 94.819 193 10 0 2232 2424 690622515 690622323 6.900000e-78 302
12 TraesCS7A01G068900 chr4A 92.308 195 15 0 2230 2424 690410535 690410729 1.160000e-70 278
13 TraesCS7A01G068900 chr4A 84.825 257 37 2 112 366 685776618 685776874 1.510000e-64 257
14 TraesCS7A01G068900 chr4A 85.098 255 24 6 1971 2221 690622728 690622484 9.110000e-62 248
15 TraesCS7A01G068900 chr4A 84.358 179 12 6 2017 2195 690410388 690410550 1.220000e-35 161
16 TraesCS7A01G068900 chr4A 85.714 105 12 3 736 837 492944020 492943916 1.610000e-19 108
17 TraesCS7A01G068900 chr7D 89.138 1915 128 31 2230 4072 34471550 34473456 0.000000e+00 2311
18 TraesCS7A01G068900 chr7D 91.885 1491 92 16 2213 3675 34374761 34376250 0.000000e+00 2056
19 TraesCS7A01G068900 chr7D 93.885 1063 62 3 2213 3272 34755218 34754156 0.000000e+00 1600
20 TraesCS7A01G068900 chr7D 88.781 927 42 13 851 1753 34759065 34758177 0.000000e+00 1079
21 TraesCS7A01G068900 chr7D 89.133 865 37 21 3274 4095 34754068 34753218 0.000000e+00 1024
22 TraesCS7A01G068900 chr7D 88.046 778 58 20 1056 1807 34371596 34372364 0.000000e+00 889
23 TraesCS7A01G068900 chr7D 91.199 659 36 11 3604 4243 34376251 34376906 0.000000e+00 876
24 TraesCS7A01G068900 chr7D 85.732 799 64 22 995 1753 34470451 34471239 0.000000e+00 798
25 TraesCS7A01G068900 chr7D 89.047 493 33 11 112 599 34759545 34759069 3.650000e-165 592
26 TraesCS7A01G068900 chr7D 83.042 401 30 15 1805 2199 34471202 34471570 3.160000e-86 329
27 TraesCS7A01G068900 chr7D 90.351 228 14 1 1968 2195 34372352 34372571 4.150000e-75 292
28 TraesCS7A01G068900 chr7D 88.745 231 24 2 112 340 34760019 34759789 8.980000e-72 281
29 TraesCS7A01G068900 chr7D 91.795 195 16 0 2230 2424 34757918 34757724 5.410000e-69 272
30 TraesCS7A01G068900 chr7D 84.914 232 29 5 164 393 112432574 112432347 3.300000e-56 230
31 TraesCS7A01G068900 chr7D 86.034 179 17 4 2017 2195 34758073 34757903 7.250000e-43 185
32 TraesCS7A01G068900 chr7D 90.000 110 5 3 4080 4189 34753129 34753026 2.060000e-28 137
33 TraesCS7A01G068900 chr2B 94.527 402 19 3 2413 2813 704812733 704813132 6.030000e-173 617
34 TraesCS7A01G068900 chr2B 83.626 171 25 1 581 751 485299205 485299372 1.580000e-34 158
35 TraesCS7A01G068900 chr2B 90.909 88 8 0 750 837 206371184 206371271 7.450000e-23 119
36 TraesCS7A01G068900 chr2B 90.909 88 8 0 750 837 206371277 206371190 7.450000e-23 119
37 TraesCS7A01G068900 chr2B 85.849 106 9 4 750 850 420740607 420740503 1.610000e-19 108
38 TraesCS7A01G068900 chr2D 85.830 247 33 2 112 356 111003266 111003512 1.170000e-65 261
39 TraesCS7A01G068900 chr3D 83.636 275 41 3 112 384 319646922 319646650 5.450000e-64 255
40 TraesCS7A01G068900 chr3D 84.328 268 31 8 112 370 100390090 100389825 7.040000e-63 252
41 TraesCS7A01G068900 chr3D 84.739 249 36 2 124 370 379054928 379054680 9.110000e-62 248
42 TraesCS7A01G068900 chr3D 89.595 173 16 2 2242 2413 579426311 579426140 7.140000e-53 219
43 TraesCS7A01G068900 chr3D 87.417 151 13 3 601 751 184589569 184589425 7.300000e-38 169
44 TraesCS7A01G068900 chr1A 84.047 257 39 2 112 366 553464926 553465182 3.280000e-61 246
45 TraesCS7A01G068900 chr1A 86.755 151 14 3 601 751 247344789 247344645 3.400000e-36 163
46 TraesCS7A01G068900 chr7B 81.172 239 33 8 610 843 481067834 481068065 9.370000e-42 182
47 TraesCS7A01G068900 chr5A 86.755 151 14 3 601 751 655547045 655546901 3.400000e-36 163
48 TraesCS7A01G068900 chr2A 86.755 151 14 3 601 751 663656568 663656424 3.400000e-36 163
49 TraesCS7A01G068900 chr2A 90.909 88 8 0 750 837 174332701 174332614 7.450000e-23 119
50 TraesCS7A01G068900 chr1B 86.755 151 14 3 601 751 330714573 330714717 3.400000e-36 163
51 TraesCS7A01G068900 chr1B 84.756 164 18 4 588 751 614906694 614906538 1.580000e-34 158
52 TraesCS7A01G068900 chr1D 81.675 191 28 4 588 777 377800591 377800775 7.350000e-33 152
53 TraesCS7A01G068900 chr1D 86.869 99 12 1 746 843 276768783 276768881 4.490000e-20 110
54 TraesCS7A01G068900 chr5B 89.109 101 8 2 747 844 417003294 417003394 5.760000e-24 122
55 TraesCS7A01G068900 chr5B 85.849 106 10 4 749 850 530625132 530625028 1.610000e-19 108
56 TraesCS7A01G068900 chr3A 86.607 112 14 1 1 111 595385501 595385612 5.760000e-24 122
57 TraesCS7A01G068900 chr3A 88.298 94 10 1 1 93 595352735 595352828 1.250000e-20 111
58 TraesCS7A01G068900 chr4D 83.929 112 17 1 1 111 215250109 215249998 5.800000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G068900 chr7A 34999792 35004035 4243 True 3993.000000 7838 95.495500 1 4244 2 chr7A.!!$R3 4243
1 TraesCS7A01G068900 chr7A 34743407 34746515 3108 False 1105.666667 1443 88.599000 1003 4244 3 chr7A.!!$F1 3241
2 TraesCS7A01G068900 chr7A 34962871 34963750 879 True 992.000000 992 87.679000 3374 4240 1 chr7A.!!$R1 866
3 TraesCS7A01G068900 chr4A 690618248 690623588 5340 True 1033.500000 2734 89.736250 995 4189 4 chr4A.!!$R2 3194
4 TraesCS7A01G068900 chr4A 690409525 690414724 5199 False 1031.500000 2763 89.380500 997 4189 4 chr4A.!!$F2 3192
5 TraesCS7A01G068900 chr7D 34470451 34473456 3005 False 1146.000000 2311 85.970667 995 4072 3 chr7D.!!$F2 3077
6 TraesCS7A01G068900 chr7D 34371596 34376906 5310 False 1028.250000 2056 90.370250 1056 4243 4 chr7D.!!$F1 3187
7 TraesCS7A01G068900 chr7D 34753026 34760019 6993 True 646.250000 1600 89.677500 112 4189 8 chr7D.!!$R2 4077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.172352 GTCAGCTCTCCGAACCTGAG 59.828 60.0 0.0 0.0 35.23 3.35 F
75 76 0.250338 GTCAGGTGGGCTTCTTTCGT 60.250 55.0 0.0 0.0 0.00 3.85 F
1078 1563 0.251209 AAAAAGAGGGCGGGAGAACC 60.251 55.0 0.0 0.0 0.00 3.62 F
1477 2035 0.110373 CGCGCCTGGTTGTTAAGTTC 60.110 55.0 0.0 0.0 0.00 3.01 F
2044 2759 0.535102 CTACATTCCCACCATCGCCC 60.535 60.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1001 1481 0.107703 CATTCCTAGCGGTTCAGGCA 60.108 55.0 0.00 0.0 0.00 4.75 R
1477 2035 0.881118 CAACGGTCAATCCCCACAAG 59.119 55.0 0.00 0.0 0.00 3.16 R
3062 8821 0.179000 CCCACGATTCTCCTTCAGGG 59.821 60.0 0.00 0.0 35.41 4.45 R
3222 8981 0.471617 AATCATCCTCCTCCGGCTTG 59.528 55.0 0.00 0.0 0.00 4.01 R
3825 9777 0.321671 GTGGCCTGTTGAGAGCAGTA 59.678 55.0 3.32 0.0 32.41 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.451064 CCTCCCATCGCTATTTTAGTTTTT 57.549 37.500 0.00 0.00 0.00 1.94
24 25 6.265577 CCTCCCATCGCTATTTTAGTTTTTG 58.734 40.000 0.00 0.00 0.00 2.44
25 26 6.127730 CCTCCCATCGCTATTTTAGTTTTTGT 60.128 38.462 0.00 0.00 0.00 2.83
26 27 6.848451 TCCCATCGCTATTTTAGTTTTTGTC 58.152 36.000 0.00 0.00 0.00 3.18
27 28 6.431543 TCCCATCGCTATTTTAGTTTTTGTCA 59.568 34.615 0.00 0.00 0.00 3.58
28 29 6.747280 CCCATCGCTATTTTAGTTTTTGTCAG 59.253 38.462 0.00 0.00 0.00 3.51
29 30 6.251376 CCATCGCTATTTTAGTTTTTGTCAGC 59.749 38.462 0.00 0.00 0.00 4.26
30 31 6.554334 TCGCTATTTTAGTTTTTGTCAGCT 57.446 33.333 0.00 0.00 0.00 4.24
31 32 6.599437 TCGCTATTTTAGTTTTTGTCAGCTC 58.401 36.000 0.00 0.00 0.00 4.09
32 33 6.426937 TCGCTATTTTAGTTTTTGTCAGCTCT 59.573 34.615 0.00 0.00 0.00 4.09
33 34 6.738649 CGCTATTTTAGTTTTTGTCAGCTCTC 59.261 38.462 0.00 0.00 0.00 3.20
34 35 7.024171 GCTATTTTAGTTTTTGTCAGCTCTCC 58.976 38.462 0.00 0.00 0.00 3.71
35 36 5.418310 TTTTAGTTTTTGTCAGCTCTCCG 57.582 39.130 0.00 0.00 0.00 4.63
36 37 2.910688 AGTTTTTGTCAGCTCTCCGA 57.089 45.000 0.00 0.00 0.00 4.55
37 38 3.194005 AGTTTTTGTCAGCTCTCCGAA 57.806 42.857 0.00 0.00 0.00 4.30
38 39 2.872858 AGTTTTTGTCAGCTCTCCGAAC 59.127 45.455 0.00 0.00 0.00 3.95
39 40 1.878953 TTTTGTCAGCTCTCCGAACC 58.121 50.000 0.00 0.00 0.00 3.62
40 41 1.048601 TTTGTCAGCTCTCCGAACCT 58.951 50.000 0.00 0.00 0.00 3.50
41 42 0.318441 TTGTCAGCTCTCCGAACCTG 59.682 55.000 0.00 0.00 0.00 4.00
42 43 0.539669 TGTCAGCTCTCCGAACCTGA 60.540 55.000 0.00 0.00 32.35 3.86
43 44 0.172352 GTCAGCTCTCCGAACCTGAG 59.828 60.000 0.00 0.00 35.23 3.35
45 46 2.185608 GCTCTCCGAACCTGAGCC 59.814 66.667 0.00 0.00 45.12 4.70
46 47 2.650116 GCTCTCCGAACCTGAGCCA 61.650 63.158 0.00 0.00 45.12 4.75
47 48 1.216710 CTCTCCGAACCTGAGCCAC 59.783 63.158 0.00 0.00 0.00 5.01
48 49 1.533033 TCTCCGAACCTGAGCCACA 60.533 57.895 0.00 0.00 0.00 4.17
49 50 1.079543 CTCCGAACCTGAGCCACAG 60.080 63.158 2.06 2.06 45.36 3.66
50 51 1.821061 CTCCGAACCTGAGCCACAGT 61.821 60.000 7.55 0.00 44.40 3.55
51 52 1.669115 CCGAACCTGAGCCACAGTG 60.669 63.158 7.55 0.00 44.40 3.66
52 53 1.069765 CGAACCTGAGCCACAGTGT 59.930 57.895 0.00 0.00 44.40 3.55
53 54 1.224069 CGAACCTGAGCCACAGTGTG 61.224 60.000 16.70 16.70 44.40 3.82
54 55 1.510480 GAACCTGAGCCACAGTGTGC 61.510 60.000 18.21 12.97 44.40 4.57
55 56 2.670934 CCTGAGCCACAGTGTGCC 60.671 66.667 18.21 6.98 44.40 5.01
56 57 3.046087 CTGAGCCACAGTGTGCCG 61.046 66.667 18.21 6.45 41.30 5.69
57 58 3.814615 CTGAGCCACAGTGTGCCGT 62.815 63.158 18.21 3.84 41.30 5.68
58 59 3.044305 GAGCCACAGTGTGCCGTC 61.044 66.667 18.21 9.52 31.34 4.79
59 60 3.807631 GAGCCACAGTGTGCCGTCA 62.808 63.158 18.21 0.00 31.34 4.35
60 61 3.349006 GCCACAGTGTGCCGTCAG 61.349 66.667 18.21 4.20 31.34 3.51
61 62 2.666190 CCACAGTGTGCCGTCAGG 60.666 66.667 18.21 0.00 41.62 3.86
62 63 2.108976 CACAGTGTGCCGTCAGGT 59.891 61.111 10.97 0.00 40.50 4.00
63 64 2.108976 ACAGTGTGCCGTCAGGTG 59.891 61.111 0.00 0.00 40.50 4.00
64 65 2.666190 CAGTGTGCCGTCAGGTGG 60.666 66.667 0.00 0.00 40.50 4.61
65 66 3.941188 AGTGTGCCGTCAGGTGGG 61.941 66.667 0.00 0.00 40.50 4.61
70 71 4.021925 GCCGTCAGGTGGGCTTCT 62.022 66.667 0.00 0.00 45.93 2.85
71 72 2.750350 CCGTCAGGTGGGCTTCTT 59.250 61.111 0.00 0.00 0.00 2.52
72 73 1.073199 CCGTCAGGTGGGCTTCTTT 59.927 57.895 0.00 0.00 0.00 2.52
73 74 0.955919 CCGTCAGGTGGGCTTCTTTC 60.956 60.000 0.00 0.00 0.00 2.62
74 75 1.291877 CGTCAGGTGGGCTTCTTTCG 61.292 60.000 0.00 0.00 0.00 3.46
75 76 0.250338 GTCAGGTGGGCTTCTTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
76 77 0.472471 TCAGGTGGGCTTCTTTCGTT 59.528 50.000 0.00 0.00 0.00 3.85
77 78 0.593128 CAGGTGGGCTTCTTTCGTTG 59.407 55.000 0.00 0.00 0.00 4.10
78 79 0.537371 AGGTGGGCTTCTTTCGTTGG 60.537 55.000 0.00 0.00 0.00 3.77
79 80 1.524008 GGTGGGCTTCTTTCGTTGGG 61.524 60.000 0.00 0.00 0.00 4.12
80 81 1.901464 TGGGCTTCTTTCGTTGGGC 60.901 57.895 0.00 0.00 0.00 5.36
81 82 2.636412 GGGCTTCTTTCGTTGGGCC 61.636 63.158 0.00 0.00 38.92 5.80
82 83 1.901464 GGCTTCTTTCGTTGGGCCA 60.901 57.895 0.00 0.00 39.38 5.36
83 84 1.460273 GGCTTCTTTCGTTGGGCCAA 61.460 55.000 16.66 16.66 39.38 4.52
84 85 0.387565 GCTTCTTTCGTTGGGCCAAA 59.612 50.000 22.82 2.89 0.00 3.28
85 86 1.202475 GCTTCTTTCGTTGGGCCAAAA 60.202 47.619 22.82 10.19 0.00 2.44
86 87 2.469826 CTTCTTTCGTTGGGCCAAAAC 58.530 47.619 22.82 9.70 0.00 2.43
90 91 3.220658 CGTTGGGCCAAAACGGGT 61.221 61.111 26.78 0.00 45.05 5.28
91 92 2.419620 GTTGGGCCAAAACGGGTG 59.580 61.111 22.82 0.00 34.06 4.61
92 93 2.840102 TTGGGCCAAAACGGGTGG 60.840 61.111 18.51 0.00 39.33 4.61
99 100 2.821991 CCAAAACGGGTGGCAATTAA 57.178 45.000 0.00 0.00 0.00 1.40
100 101 2.409012 CCAAAACGGGTGGCAATTAAC 58.591 47.619 0.00 0.00 0.00 2.01
101 102 2.055100 CAAAACGGGTGGCAATTAACG 58.945 47.619 0.00 0.00 0.00 3.18
102 103 1.606903 AAACGGGTGGCAATTAACGA 58.393 45.000 0.00 0.00 0.00 3.85
103 104 1.606903 AACGGGTGGCAATTAACGAA 58.393 45.000 0.00 0.00 0.00 3.85
104 105 1.606903 ACGGGTGGCAATTAACGAAA 58.393 45.000 0.00 0.00 0.00 3.46
105 106 1.267533 ACGGGTGGCAATTAACGAAAC 59.732 47.619 0.00 0.00 0.00 2.78
106 107 1.267261 CGGGTGGCAATTAACGAAACA 59.733 47.619 0.00 0.00 0.00 2.83
107 108 2.287668 CGGGTGGCAATTAACGAAACAA 60.288 45.455 0.00 0.00 0.00 2.83
108 109 3.718815 GGGTGGCAATTAACGAAACAAA 58.281 40.909 0.00 0.00 0.00 2.83
109 110 4.120589 GGGTGGCAATTAACGAAACAAAA 58.879 39.130 0.00 0.00 0.00 2.44
110 111 4.752604 GGGTGGCAATTAACGAAACAAAAT 59.247 37.500 0.00 0.00 0.00 1.82
117 118 8.592155 GGCAATTAACGAAACAAAATTATCTCC 58.408 33.333 0.00 0.00 0.00 3.71
148 149 4.267349 AGTTAGATAAACTGTGCGTGGT 57.733 40.909 0.00 0.00 46.90 4.16
150 151 1.710013 AGATAAACTGTGCGTGGTCG 58.290 50.000 0.00 0.00 40.37 4.79
154 155 1.027792 AAACTGTGCGTGGTCGGTTT 61.028 50.000 0.00 0.00 38.02 3.27
162 163 0.881159 CGTGGTCGGTTTGCAGGTTA 60.881 55.000 0.00 0.00 0.00 2.85
166 167 2.156098 GGTCGGTTTGCAGGTTATGAA 58.844 47.619 0.00 0.00 0.00 2.57
193 669 3.046374 ACCCTCCCATCGCTATTTTAGT 58.954 45.455 0.00 0.00 0.00 2.24
216 692 3.465403 CCAGCTCTCCGGACCCAG 61.465 72.222 0.00 0.00 0.00 4.45
217 693 2.681778 CAGCTCTCCGGACCCAGT 60.682 66.667 0.00 0.00 0.00 4.00
219 695 2.680352 GCTCTCCGGACCCAGTCA 60.680 66.667 0.00 0.00 33.68 3.41
220 696 2.060980 GCTCTCCGGACCCAGTCAT 61.061 63.158 0.00 0.00 33.68 3.06
233 710 0.735978 CAGTCATAGTGCGCCGTCAA 60.736 55.000 4.18 0.00 0.00 3.18
238 715 2.852495 ATAGTGCGCCGTCAAGTGGG 62.852 60.000 4.18 0.00 0.00 4.61
265 742 2.840102 TTGGGCCAAAACGGGTGG 60.840 61.111 18.51 0.00 39.33 4.61
273 750 1.616374 CCAAAACGGGTGGCAAGTAAT 59.384 47.619 0.00 0.00 0.00 1.89
281 758 3.243569 CGGGTGGCAAGTAATGAAACAAA 60.244 43.478 0.00 0.00 0.00 2.83
285 762 6.931840 GGGTGGCAAGTAATGAAACAAAATAA 59.068 34.615 0.00 0.00 0.00 1.40
292 769 8.846607 CAAGTAATGAAACAAAATAAGGTACGC 58.153 33.333 0.00 0.00 0.00 4.42
342 819 4.192317 AGCTGGACGAAACCAAGAATATC 58.808 43.478 0.00 0.00 39.59 1.63
344 821 4.576463 GCTGGACGAAACCAAGAATATCAT 59.424 41.667 0.00 0.00 39.59 2.45
453 930 4.509970 TCAGGTAGACATTTGTGAAACGTG 59.490 41.667 0.00 0.00 42.39 4.49
454 931 3.250040 AGGTAGACATTTGTGAAACGTGC 59.750 43.478 0.00 0.00 42.39 5.34
603 1083 8.810652 TGTATTTTGTATTTTCCAAAGCACTC 57.189 30.769 0.00 0.00 33.67 3.51
604 1084 7.870445 TGTATTTTGTATTTTCCAAAGCACTCC 59.130 33.333 0.00 0.00 33.67 3.85
605 1085 4.864704 TTGTATTTTCCAAAGCACTCCC 57.135 40.909 0.00 0.00 0.00 4.30
606 1086 4.112634 TGTATTTTCCAAAGCACTCCCT 57.887 40.909 0.00 0.00 0.00 4.20
607 1087 4.479158 TGTATTTTCCAAAGCACTCCCTT 58.521 39.130 0.00 0.00 0.00 3.95
608 1088 4.898861 TGTATTTTCCAAAGCACTCCCTTT 59.101 37.500 0.00 0.00 35.52 3.11
610 1090 2.452600 TTCCAAAGCACTCCCTTTGT 57.547 45.000 12.10 0.00 46.38 2.83
611 1091 2.452600 TCCAAAGCACTCCCTTTGTT 57.547 45.000 12.10 0.00 46.38 2.83
612 1092 2.306847 TCCAAAGCACTCCCTTTGTTC 58.693 47.619 12.10 0.00 46.38 3.18
613 1093 1.341209 CCAAAGCACTCCCTTTGTTCC 59.659 52.381 12.10 0.00 46.38 3.62
614 1094 1.001378 CAAAGCACTCCCTTTGTTCCG 60.001 52.381 6.50 0.00 44.08 4.30
615 1095 0.472471 AAGCACTCCCTTTGTTCCGA 59.528 50.000 0.00 0.00 0.00 4.55
616 1096 0.472471 AGCACTCCCTTTGTTCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
617 1097 1.133915 AGCACTCCCTTTGTTCCGAAA 60.134 47.619 0.00 0.00 0.00 3.46
618 1098 1.886542 GCACTCCCTTTGTTCCGAAAT 59.113 47.619 0.00 0.00 0.00 2.17
619 1099 3.078837 GCACTCCCTTTGTTCCGAAATA 58.921 45.455 0.00 0.00 0.00 1.40
620 1100 3.694566 GCACTCCCTTTGTTCCGAAATAT 59.305 43.478 0.00 0.00 0.00 1.28
621 1101 4.157840 GCACTCCCTTTGTTCCGAAATATT 59.842 41.667 0.00 0.00 0.00 1.28
622 1102 5.336451 GCACTCCCTTTGTTCCGAAATATTT 60.336 40.000 0.00 0.00 0.00 1.40
623 1103 6.092748 CACTCCCTTTGTTCCGAAATATTTG 58.907 40.000 5.17 0.00 0.00 2.32
624 1104 5.773176 ACTCCCTTTGTTCCGAAATATTTGT 59.227 36.000 5.17 0.00 0.00 2.83
625 1105 6.072119 ACTCCCTTTGTTCCGAAATATTTGTC 60.072 38.462 5.17 0.00 0.00 3.18
626 1106 6.007703 TCCCTTTGTTCCGAAATATTTGTCT 58.992 36.000 5.17 0.00 0.00 3.41
627 1107 6.492087 TCCCTTTGTTCCGAAATATTTGTCTT 59.508 34.615 5.17 0.00 0.00 3.01
628 1108 7.014808 TCCCTTTGTTCCGAAATATTTGTCTTT 59.985 33.333 5.17 0.00 0.00 2.52
629 1109 7.655732 CCCTTTGTTCCGAAATATTTGTCTTTT 59.344 33.333 5.17 0.00 0.00 2.27
630 1110 9.040939 CCTTTGTTCCGAAATATTTGTCTTTTT 57.959 29.630 5.17 0.00 0.00 1.94
658 1138 9.838339 AAGATTTCAAATAGACTACCACATAGG 57.162 33.333 0.00 0.00 45.67 2.57
659 1139 9.213777 AGATTTCAAATAGACTACCACATAGGA 57.786 33.333 0.00 0.00 41.22 2.94
660 1140 9.832445 GATTTCAAATAGACTACCACATAGGAA 57.168 33.333 0.00 0.00 41.22 3.36
664 1144 9.090103 TCAAATAGACTACCACATAGGAATAGG 57.910 37.037 0.00 0.00 41.22 2.57
665 1145 9.090103 CAAATAGACTACCACATAGGAATAGGA 57.910 37.037 0.00 0.00 41.22 2.94
666 1146 9.670442 AAATAGACTACCACATAGGAATAGGAA 57.330 33.333 0.00 0.00 41.22 3.36
667 1147 9.845214 AATAGACTACCACATAGGAATAGGAAT 57.155 33.333 0.00 0.00 41.22 3.01
668 1148 7.546250 AGACTACCACATAGGAATAGGAATG 57.454 40.000 0.00 0.00 41.22 2.67
669 1149 7.076446 AGACTACCACATAGGAATAGGAATGT 58.924 38.462 0.00 0.00 41.22 2.71
670 1150 8.232412 AGACTACCACATAGGAATAGGAATGTA 58.768 37.037 0.00 0.00 41.22 2.29
671 1151 8.974292 ACTACCACATAGGAATAGGAATGTAT 57.026 34.615 0.00 0.00 41.22 2.29
710 1190 8.919777 AGAGTGTAGTTTAACCTATTTTGCTT 57.080 30.769 0.00 0.00 0.00 3.91
711 1191 9.000486 AGAGTGTAGTTTAACCTATTTTGCTTC 58.000 33.333 0.00 0.00 0.00 3.86
712 1192 8.685838 AGTGTAGTTTAACCTATTTTGCTTCA 57.314 30.769 0.00 0.00 0.00 3.02
713 1193 9.297037 AGTGTAGTTTAACCTATTTTGCTTCAT 57.703 29.630 0.00 0.00 0.00 2.57
764 1244 9.354673 AGAAAGACAAATACTCCTTTCATTTCA 57.645 29.630 13.83 0.00 44.00 2.69
765 1245 9.965824 GAAAGACAAATACTCCTTTCATTTCAA 57.034 29.630 0.00 0.00 42.23 2.69
776 1256 9.525826 ACTCCTTTCATTTCAAAATAGATGACT 57.474 29.630 0.00 0.00 0.00 3.41
778 1258 9.519191 TCCTTTCATTTCAAAATAGATGACTCA 57.481 29.630 0.00 0.00 0.00 3.41
834 1314 5.449304 GTTGAGTCAACTATTTTGGAACGG 58.551 41.667 25.56 0.00 40.73 4.44
835 1315 4.963373 TGAGTCAACTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
836 1316 4.994852 TGAGTCAACTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
837 1317 5.221561 TGAGTCAACTATTTTGGAACGGAGA 60.222 40.000 0.00 0.00 0.00 3.71
838 1318 5.617252 AGTCAACTATTTTGGAACGGAGAA 58.383 37.500 0.00 0.00 0.00 2.87
839 1319 5.701290 AGTCAACTATTTTGGAACGGAGAAG 59.299 40.000 0.00 0.00 0.00 2.85
840 1320 5.469084 GTCAACTATTTTGGAACGGAGAAGT 59.531 40.000 0.00 0.00 0.00 3.01
841 1321 6.647895 GTCAACTATTTTGGAACGGAGAAGTA 59.352 38.462 0.00 0.00 0.00 2.24
842 1322 7.333672 GTCAACTATTTTGGAACGGAGAAGTAT 59.666 37.037 0.00 0.00 0.00 2.12
843 1323 8.533657 TCAACTATTTTGGAACGGAGAAGTATA 58.466 33.333 0.00 0.00 0.00 1.47
844 1324 9.158233 CAACTATTTTGGAACGGAGAAGTATAA 57.842 33.333 0.00 0.00 0.00 0.98
845 1325 9.901172 AACTATTTTGGAACGGAGAAGTATAAT 57.099 29.630 0.00 0.00 0.00 1.28
923 1403 3.545124 CTGCGTGGTAACTGGGCCA 62.545 63.158 5.85 5.85 37.61 5.36
989 1469 1.202405 CCCGCAAAGTTATGGATTGGC 60.202 52.381 0.00 0.00 0.00 4.52
990 1470 1.202405 CCGCAAAGTTATGGATTGGCC 60.202 52.381 0.00 0.00 37.10 5.36
991 1471 1.202405 CGCAAAGTTATGGATTGGCCC 60.202 52.381 0.00 0.00 34.97 5.80
992 1472 1.830477 GCAAAGTTATGGATTGGCCCA 59.170 47.619 0.00 0.00 41.05 5.36
1001 1481 1.710244 TGGATTGGCCCATTATCCGAT 59.290 47.619 9.41 0.00 40.59 4.18
1037 1517 4.432741 GGGCCAGCTGAAGGGGAC 62.433 72.222 17.39 0.00 0.00 4.46
1078 1563 0.251209 AAAAAGAGGGCGGGAGAACC 60.251 55.000 0.00 0.00 0.00 3.62
1312 1855 1.591504 GCCCGATCCCAAGCGAAAAA 61.592 55.000 0.00 0.00 36.04 1.94
1432 1990 3.998672 GACCGAGGTTCGTGCCCA 61.999 66.667 0.00 0.00 38.40 5.36
1447 2005 2.551912 CCCACCAGGTGTTTGCGTC 61.552 63.158 18.82 0.00 0.00 5.19
1455 2013 3.369052 CCAGGTGTTTGCGTCTATTCCTA 60.369 47.826 0.00 0.00 0.00 2.94
1464 2022 1.152610 TCTATTCCTACCCGCGCCT 60.153 57.895 0.00 0.00 0.00 5.52
1472 2030 2.510064 CTACCCGCGCCTGGTTGTTA 62.510 60.000 20.06 3.08 37.31 2.41
1474 2032 2.686816 CCCGCGCCTGGTTGTTAAG 61.687 63.158 0.00 0.00 0.00 1.85
1477 2035 0.110373 CGCGCCTGGTTGTTAAGTTC 60.110 55.000 0.00 0.00 0.00 3.01
1479 2037 1.607148 GCGCCTGGTTGTTAAGTTCTT 59.393 47.619 0.00 0.00 0.00 2.52
1589 2149 2.159841 CGACTGCCTCAACATGTTTACG 60.160 50.000 8.77 0.00 0.00 3.18
1631 2191 1.455217 CGAGATCCGGTACCCTGGT 60.455 63.158 6.25 0.00 33.91 4.00
1691 2251 7.506261 TCTCTGTCTACTAGGTTCTCTTTGTTT 59.494 37.037 0.00 0.00 0.00 2.83
1703 2263 6.325596 GTTCTCTTTGTTTGTCTTTGCTTCT 58.674 36.000 0.00 0.00 0.00 2.85
1825 2452 9.764363 TTTATATTGAGCATGTAACTCACTAGG 57.236 33.333 1.46 0.00 43.64 3.02
1826 2453 3.526931 TGAGCATGTAACTCACTAGGC 57.473 47.619 0.00 0.00 39.21 3.93
1827 2454 2.831526 TGAGCATGTAACTCACTAGGCA 59.168 45.455 0.00 0.00 39.21 4.75
1828 2455 3.452264 TGAGCATGTAACTCACTAGGCAT 59.548 43.478 0.00 0.00 39.21 4.40
1829 2456 4.080919 TGAGCATGTAACTCACTAGGCATT 60.081 41.667 0.00 0.00 39.21 3.56
1830 2457 4.848357 AGCATGTAACTCACTAGGCATTT 58.152 39.130 0.00 0.00 0.00 2.32
1831 2458 4.637534 AGCATGTAACTCACTAGGCATTTG 59.362 41.667 0.00 0.00 0.00 2.32
1832 2459 4.731773 GCATGTAACTCACTAGGCATTTGC 60.732 45.833 0.00 0.00 41.14 3.68
1833 2460 4.014569 TGTAACTCACTAGGCATTTGCA 57.985 40.909 4.74 0.00 44.36 4.08
1834 2461 4.588899 TGTAACTCACTAGGCATTTGCAT 58.411 39.130 4.74 0.00 44.36 3.96
1835 2462 5.739959 TGTAACTCACTAGGCATTTGCATA 58.260 37.500 4.74 0.52 44.36 3.14
1842 2469 2.062971 AGGCATTTGCATAGTCCTGG 57.937 50.000 4.74 0.00 44.36 4.45
1843 2470 1.035139 GGCATTTGCATAGTCCTGGG 58.965 55.000 4.74 0.00 44.36 4.45
1857 2484 3.726859 AGTCCTGGGGGATAAATTGCATA 59.273 43.478 0.00 0.00 44.33 3.14
1859 2486 4.706962 GTCCTGGGGGATAAATTGCATATC 59.293 45.833 0.00 0.00 44.33 1.63
1897 2524 6.611613 TGGAAAGTTGATCTAGTGACTCAT 57.388 37.500 0.00 0.00 0.00 2.90
1899 2526 7.453393 TGGAAAGTTGATCTAGTGACTCATTT 58.547 34.615 0.00 0.00 0.00 2.32
1900 2527 8.593679 TGGAAAGTTGATCTAGTGACTCATTTA 58.406 33.333 0.00 0.00 0.00 1.40
2038 2753 5.072600 AGTTCACTTTACTACATTCCCACCA 59.927 40.000 0.00 0.00 0.00 4.17
2040 2755 5.741011 TCACTTTACTACATTCCCACCATC 58.259 41.667 0.00 0.00 0.00 3.51
2044 2759 0.535102 CTACATTCCCACCATCGCCC 60.535 60.000 0.00 0.00 0.00 6.13
2062 2777 6.532365 TCGCCCAAAACAAATAAACATTTC 57.468 33.333 0.00 0.00 0.00 2.17
2117 2832 7.682787 ATTCTGGAGATGGATGTAACTTAGT 57.317 36.000 0.00 0.00 0.00 2.24
2118 2833 8.783660 ATTCTGGAGATGGATGTAACTTAGTA 57.216 34.615 0.00 0.00 0.00 1.82
2119 2834 8.603898 TTCTGGAGATGGATGTAACTTAGTAA 57.396 34.615 0.00 0.00 0.00 2.24
2120 2835 8.783660 TCTGGAGATGGATGTAACTTAGTAAT 57.216 34.615 0.00 0.00 0.00 1.89
2121 2836 8.642432 TCTGGAGATGGATGTAACTTAGTAATG 58.358 37.037 0.00 0.00 0.00 1.90
2122 2837 8.319057 TGGAGATGGATGTAACTTAGTAATGT 57.681 34.615 0.00 0.00 0.00 2.71
2123 2838 9.429109 TGGAGATGGATGTAACTTAGTAATGTA 57.571 33.333 0.00 0.00 0.00 2.29
2195 2920 6.801862 GGACTTTTGTGTTAAGTGTATGCATC 59.198 38.462 0.19 0.00 36.04 3.91
2196 2921 7.270757 ACTTTTGTGTTAAGTGTATGCATCA 57.729 32.000 0.19 0.00 34.68 3.07
2197 2922 7.885297 ACTTTTGTGTTAAGTGTATGCATCAT 58.115 30.769 0.19 0.00 34.68 2.45
2198 2923 8.359642 ACTTTTGTGTTAAGTGTATGCATCATT 58.640 29.630 0.19 0.00 34.68 2.57
2199 2924 9.838975 CTTTTGTGTTAAGTGTATGCATCATTA 57.161 29.630 0.19 0.00 0.00 1.90
2200 2925 9.619316 TTTTGTGTTAAGTGTATGCATCATTAC 57.381 29.630 0.19 0.00 0.00 1.89
2201 2926 7.913674 TGTGTTAAGTGTATGCATCATTACA 57.086 32.000 0.19 0.00 0.00 2.41
2202 2927 8.504812 TGTGTTAAGTGTATGCATCATTACAT 57.495 30.769 0.19 0.00 0.00 2.29
2258 5750 5.739752 TGTATACATTGATTCAGTGCTGC 57.260 39.130 8.90 0.00 0.00 5.25
2329 8058 1.069204 CTGTACTAGCCCACGATGCAT 59.931 52.381 0.00 0.00 0.00 3.96
2336 8065 0.956633 GCCCACGATGCATGATTCAT 59.043 50.000 2.46 0.00 0.00 2.57
2427 8182 4.927425 GCAAGTCAATCATTTTGCTCATGT 59.073 37.500 0.00 0.00 41.89 3.21
2435 8190 8.714179 TCAATCATTTTGCTCATGTTTTTCATC 58.286 29.630 0.00 0.00 34.09 2.92
2591 8346 6.116711 TGTTAAGGTACCTGCAATACTTCA 57.883 37.500 17.14 4.18 0.00 3.02
2606 8361 7.394077 TGCAATACTTCATCCATTCTTTTCTCA 59.606 33.333 0.00 0.00 0.00 3.27
2612 8367 5.957798 TCATCCATTCTTTTCTCATTGCAC 58.042 37.500 0.00 0.00 0.00 4.57
2640 8396 6.032880 GTCGCTACGAGTTCTAACGTTTAATT 59.967 38.462 5.91 0.00 42.61 1.40
2951 8707 8.211629 GTGACCAAGAATTATCCTACAGGTAAT 58.788 37.037 0.00 0.00 36.34 1.89
2993 8752 1.958579 AGCATGCTTCTTTGTGCTGAA 59.041 42.857 16.30 0.00 45.44 3.02
3062 8821 1.324736 CTCGAATGTTCCAAGTAGCGC 59.675 52.381 0.00 0.00 0.00 5.92
3064 8823 0.733150 GAATGTTCCAAGTAGCGCCC 59.267 55.000 2.29 0.00 0.00 6.13
3159 8918 1.473434 GCAAGGCTAGGTACGCAATCT 60.473 52.381 0.00 0.00 0.00 2.40
3222 8981 7.044706 CGGATTGCTTTTATCGAATTCTTTGTC 60.045 37.037 3.52 0.00 0.00 3.18
3272 9032 7.709947 ACAAATGATTCCTAGCATGTATTGTG 58.290 34.615 0.00 0.00 31.20 3.33
3310 9156 1.542108 GGCCTGTGTCATCTATGAGGC 60.542 57.143 10.85 10.85 41.23 4.70
3315 9161 1.765314 GTGTCATCTATGAGGCCTGGT 59.235 52.381 12.00 0.00 37.51 4.00
3363 9209 6.552008 TGAAGGTCATGGTATTCTTTTCCTT 58.448 36.000 0.00 0.00 35.81 3.36
3541 9392 2.961741 TGGCAAGGACATACAAAGCAAA 59.038 40.909 0.00 0.00 0.00 3.68
3545 9396 6.162777 GGCAAGGACATACAAAGCAAAAATA 58.837 36.000 0.00 0.00 0.00 1.40
3546 9397 6.818142 GGCAAGGACATACAAAGCAAAAATAT 59.182 34.615 0.00 0.00 0.00 1.28
3552 9422 7.981225 GGACATACAAAGCAAAAATATGTGGAT 59.019 33.333 0.17 0.00 36.77 3.41
3601 9473 3.686227 TGAGCCCCAAATATGTGGATT 57.314 42.857 14.07 0.00 41.65 3.01
3628 9500 6.611613 TCTAGATGTTTATCCATGGCTAGG 57.388 41.667 6.96 0.00 33.64 3.02
3645 9517 9.155975 CATGGCTAGGTTAATGACTATGAATAC 57.844 37.037 0.00 0.00 0.00 1.89
3825 9777 1.360194 CTGTCTCGTCGTAGCCTCGT 61.360 60.000 0.00 0.00 0.00 4.18
3929 9894 1.986210 GCCATTCCCAAGCAAGGCT 60.986 57.895 0.00 0.00 42.56 4.58
3940 9905 0.682852 AGCAAGGCTTGTGTACGGTA 59.317 50.000 26.71 0.00 33.89 4.02
3964 9947 4.159120 GTTTTCGCTCCTGTTTATTCTGC 58.841 43.478 0.00 0.00 0.00 4.26
4097 10184 1.487976 TGAGAGGAATGCCAGCTAAGG 59.512 52.381 0.00 0.00 36.29 2.69
4141 10230 4.221703 CGGTGAGGGCAGAAGAGATATATT 59.778 45.833 0.00 0.00 0.00 1.28
4176 10265 5.766150 ATCACCAACGAATCTTCAACAAA 57.234 34.783 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.127730 ACAAAAACTAAAATAGCGATGGGAGG 60.128 38.462 0.00 0.00 0.00 4.30
1 2 6.852664 ACAAAAACTAAAATAGCGATGGGAG 58.147 36.000 0.00 0.00 0.00 4.30
2 3 6.431543 TGACAAAAACTAAAATAGCGATGGGA 59.568 34.615 0.00 0.00 0.00 4.37
3 4 6.616947 TGACAAAAACTAAAATAGCGATGGG 58.383 36.000 0.00 0.00 0.00 4.00
4 5 6.251376 GCTGACAAAAACTAAAATAGCGATGG 59.749 38.462 0.00 0.00 0.00 3.51
5 6 7.023575 AGCTGACAAAAACTAAAATAGCGATG 58.976 34.615 0.00 0.00 34.11 3.84
6 7 7.119846 AGAGCTGACAAAAACTAAAATAGCGAT 59.880 33.333 0.00 0.00 34.11 4.58
7 8 6.426937 AGAGCTGACAAAAACTAAAATAGCGA 59.573 34.615 0.00 0.00 34.11 4.93
8 9 6.603095 AGAGCTGACAAAAACTAAAATAGCG 58.397 36.000 0.00 0.00 34.11 4.26
9 10 7.024171 GGAGAGCTGACAAAAACTAAAATAGC 58.976 38.462 0.00 0.00 0.00 2.97
10 11 7.117812 TCGGAGAGCTGACAAAAACTAAAATAG 59.882 37.037 0.00 0.00 0.00 1.73
11 12 6.932400 TCGGAGAGCTGACAAAAACTAAAATA 59.068 34.615 0.00 0.00 0.00 1.40
12 13 5.763204 TCGGAGAGCTGACAAAAACTAAAAT 59.237 36.000 0.00 0.00 0.00 1.82
13 14 5.120399 TCGGAGAGCTGACAAAAACTAAAA 58.880 37.500 0.00 0.00 0.00 1.52
14 15 4.699637 TCGGAGAGCTGACAAAAACTAAA 58.300 39.130 0.00 0.00 0.00 1.85
15 16 4.330944 TCGGAGAGCTGACAAAAACTAA 57.669 40.909 0.00 0.00 0.00 2.24
16 17 4.056050 GTTCGGAGAGCTGACAAAAACTA 58.944 43.478 0.00 0.00 38.43 2.24
17 18 2.872858 GTTCGGAGAGCTGACAAAAACT 59.127 45.455 0.00 0.00 38.43 2.66
18 19 2.031944 GGTTCGGAGAGCTGACAAAAAC 60.032 50.000 0.00 0.00 38.04 2.43
19 20 2.158813 AGGTTCGGAGAGCTGACAAAAA 60.159 45.455 0.00 0.00 38.04 1.94
20 21 1.416401 AGGTTCGGAGAGCTGACAAAA 59.584 47.619 0.00 0.00 38.04 2.44
21 22 1.048601 AGGTTCGGAGAGCTGACAAA 58.951 50.000 0.00 0.00 38.04 2.83
22 23 0.318441 CAGGTTCGGAGAGCTGACAA 59.682 55.000 0.00 0.00 45.54 3.18
23 24 0.539669 TCAGGTTCGGAGAGCTGACA 60.540 55.000 13.98 0.00 46.04 3.58
24 25 0.172352 CTCAGGTTCGGAGAGCTGAC 59.828 60.000 13.98 0.00 46.04 3.51
29 30 1.216710 GTGGCTCAGGTTCGGAGAG 59.783 63.158 0.00 0.00 38.43 3.20
30 31 1.533033 TGTGGCTCAGGTTCGGAGA 60.533 57.895 0.00 0.00 34.24 3.71
31 32 1.079543 CTGTGGCTCAGGTTCGGAG 60.080 63.158 8.67 0.00 40.23 4.63
32 33 3.059982 CTGTGGCTCAGGTTCGGA 58.940 61.111 8.67 0.00 40.23 4.55
44 45 2.666190 CCTGACGGCACACTGTGG 60.666 66.667 13.09 2.45 34.75 4.17
45 46 2.108976 ACCTGACGGCACACTGTG 59.891 61.111 6.19 6.19 34.75 3.66
46 47 2.108976 CACCTGACGGCACACTGT 59.891 61.111 0.00 0.00 38.42 3.55
47 48 2.666190 CCACCTGACGGCACACTG 60.666 66.667 0.00 0.00 0.00 3.66
48 49 3.941188 CCCACCTGACGGCACACT 61.941 66.667 0.00 0.00 0.00 3.55
53 54 3.553095 AAGAAGCCCACCTGACGGC 62.553 63.158 0.00 0.00 46.09 5.68
54 55 0.955919 GAAAGAAGCCCACCTGACGG 60.956 60.000 0.00 0.00 0.00 4.79
55 56 1.291877 CGAAAGAAGCCCACCTGACG 61.292 60.000 0.00 0.00 0.00 4.35
56 57 0.250338 ACGAAAGAAGCCCACCTGAC 60.250 55.000 0.00 0.00 0.00 3.51
57 58 0.472471 AACGAAAGAAGCCCACCTGA 59.528 50.000 0.00 0.00 0.00 3.86
58 59 0.593128 CAACGAAAGAAGCCCACCTG 59.407 55.000 0.00 0.00 0.00 4.00
59 60 0.537371 CCAACGAAAGAAGCCCACCT 60.537 55.000 0.00 0.00 0.00 4.00
60 61 1.524008 CCCAACGAAAGAAGCCCACC 61.524 60.000 0.00 0.00 0.00 4.61
61 62 1.956802 CCCAACGAAAGAAGCCCAC 59.043 57.895 0.00 0.00 0.00 4.61
62 63 1.901464 GCCCAACGAAAGAAGCCCA 60.901 57.895 0.00 0.00 0.00 5.36
63 64 2.636412 GGCCCAACGAAAGAAGCCC 61.636 63.158 0.00 0.00 34.23 5.19
64 65 1.460273 TTGGCCCAACGAAAGAAGCC 61.460 55.000 0.00 0.00 40.87 4.35
65 66 0.387565 TTTGGCCCAACGAAAGAAGC 59.612 50.000 0.00 0.00 0.00 3.86
66 67 2.469826 GTTTTGGCCCAACGAAAGAAG 58.530 47.619 0.00 0.00 0.00 2.85
67 68 2.588027 GTTTTGGCCCAACGAAAGAA 57.412 45.000 0.00 0.00 0.00 2.52
73 74 3.220658 ACCCGTTTTGGCCCAACG 61.221 61.111 23.94 23.94 45.35 4.10
74 75 2.419620 CACCCGTTTTGGCCCAAC 59.580 61.111 0.00 2.02 35.87 3.77
75 76 2.840102 CCACCCGTTTTGGCCCAA 60.840 61.111 0.00 0.00 35.87 4.12
80 81 2.409012 GTTAATTGCCACCCGTTTTGG 58.591 47.619 0.00 0.00 37.17 3.28
81 82 2.055100 CGTTAATTGCCACCCGTTTTG 58.945 47.619 0.00 0.00 0.00 2.44
82 83 1.955080 TCGTTAATTGCCACCCGTTTT 59.045 42.857 0.00 0.00 0.00 2.43
83 84 1.606903 TCGTTAATTGCCACCCGTTT 58.393 45.000 0.00 0.00 0.00 3.60
84 85 1.606903 TTCGTTAATTGCCACCCGTT 58.393 45.000 0.00 0.00 0.00 4.44
85 86 1.267533 GTTTCGTTAATTGCCACCCGT 59.732 47.619 0.00 0.00 0.00 5.28
86 87 1.267261 TGTTTCGTTAATTGCCACCCG 59.733 47.619 0.00 0.00 0.00 5.28
87 88 3.372660 TTGTTTCGTTAATTGCCACCC 57.627 42.857 0.00 0.00 0.00 4.61
88 89 5.915812 ATTTTGTTTCGTTAATTGCCACC 57.084 34.783 0.00 0.00 0.00 4.61
89 90 8.921670 AGATAATTTTGTTTCGTTAATTGCCAC 58.078 29.630 0.00 0.00 0.00 5.01
90 91 9.134734 GAGATAATTTTGTTTCGTTAATTGCCA 57.865 29.630 0.00 0.00 0.00 4.92
91 92 8.592155 GGAGATAATTTTGTTTCGTTAATTGCC 58.408 33.333 0.00 0.00 0.00 4.52
92 93 9.134734 TGGAGATAATTTTGTTTCGTTAATTGC 57.865 29.630 0.00 0.00 0.00 3.56
94 95 9.353999 GCTGGAGATAATTTTGTTTCGTTAATT 57.646 29.630 0.00 0.00 0.00 1.40
95 96 8.739972 AGCTGGAGATAATTTTGTTTCGTTAAT 58.260 29.630 0.00 0.00 0.00 1.40
96 97 8.020819 CAGCTGGAGATAATTTTGTTTCGTTAA 58.979 33.333 5.57 0.00 0.00 2.01
97 98 7.361713 CCAGCTGGAGATAATTTTGTTTCGTTA 60.362 37.037 29.88 0.00 37.39 3.18
98 99 6.381801 CAGCTGGAGATAATTTTGTTTCGTT 58.618 36.000 5.57 0.00 0.00 3.85
99 100 5.106157 CCAGCTGGAGATAATTTTGTTTCGT 60.106 40.000 29.88 0.00 37.39 3.85
100 101 5.335127 CCAGCTGGAGATAATTTTGTTTCG 58.665 41.667 29.88 0.00 37.39 3.46
101 102 5.185828 ACCCAGCTGGAGATAATTTTGTTTC 59.814 40.000 34.91 0.00 37.39 2.78
102 103 5.086621 ACCCAGCTGGAGATAATTTTGTTT 58.913 37.500 34.91 0.86 37.39 2.83
103 104 4.677182 ACCCAGCTGGAGATAATTTTGTT 58.323 39.130 34.91 1.36 37.39 2.83
104 105 4.263905 TGACCCAGCTGGAGATAATTTTGT 60.264 41.667 34.91 18.45 37.39 2.83
105 106 4.272489 TGACCCAGCTGGAGATAATTTTG 58.728 43.478 34.91 15.18 37.39 2.44
106 107 4.018050 ACTGACCCAGCTGGAGATAATTTT 60.018 41.667 34.91 6.17 37.39 1.82
107 108 3.525199 ACTGACCCAGCTGGAGATAATTT 59.475 43.478 34.91 6.89 37.39 1.82
108 109 3.118531 ACTGACCCAGCTGGAGATAATT 58.881 45.455 34.91 8.82 37.39 1.40
109 110 2.769209 ACTGACCCAGCTGGAGATAAT 58.231 47.619 34.91 11.78 37.39 1.28
110 111 2.254152 ACTGACCCAGCTGGAGATAA 57.746 50.000 34.91 11.24 37.39 1.75
117 118 5.091261 AGTTTATCTAACTGACCCAGCTG 57.909 43.478 6.78 6.78 45.33 4.24
145 146 1.072489 TCATAACCTGCAAACCGACCA 59.928 47.619 0.00 0.00 0.00 4.02
148 149 3.126171 CGATTTCATAACCTGCAAACCGA 59.874 43.478 0.00 0.00 0.00 4.69
150 151 4.695217 TCGATTTCATAACCTGCAAACC 57.305 40.909 0.00 0.00 0.00 3.27
154 155 3.013921 GGGTTCGATTTCATAACCTGCA 58.986 45.455 0.00 0.00 41.95 4.41
162 163 2.485479 CGATGGGAGGGTTCGATTTCAT 60.485 50.000 0.00 0.00 34.92 2.57
166 167 1.146263 GCGATGGGAGGGTTCGATT 59.854 57.895 0.00 0.00 34.92 3.34
193 669 0.889186 GTCCGGAGAGCTGGCAAAAA 60.889 55.000 3.06 0.00 40.61 1.94
214 690 0.735978 TTGACGGCGCACTATGACTG 60.736 55.000 10.83 0.00 0.00 3.51
215 691 0.458543 CTTGACGGCGCACTATGACT 60.459 55.000 10.83 0.00 0.00 3.41
216 692 0.736325 ACTTGACGGCGCACTATGAC 60.736 55.000 10.83 0.00 0.00 3.06
217 693 0.735978 CACTTGACGGCGCACTATGA 60.736 55.000 10.83 0.00 0.00 2.15
219 695 1.447838 CCACTTGACGGCGCACTAT 60.448 57.895 10.83 0.00 0.00 2.12
220 696 2.048597 CCACTTGACGGCGCACTA 60.049 61.111 10.83 0.00 0.00 2.74
233 710 0.537371 CCCAACGAAAGAAGCCCACT 60.537 55.000 0.00 0.00 0.00 4.00
238 715 0.387565 TTTGGCCCAACGAAAGAAGC 59.612 50.000 0.00 0.00 0.00 3.86
265 742 8.846607 CGTACCTTATTTTGTTTCATTACTTGC 58.153 33.333 0.00 0.00 0.00 4.01
273 750 5.670149 TTCGCGTACCTTATTTTGTTTCA 57.330 34.783 5.77 0.00 0.00 2.69
281 758 9.442033 GCTTTAATTAATTTCGCGTACCTTATT 57.558 29.630 5.77 3.90 0.00 1.40
285 762 5.495502 CGCTTTAATTAATTTCGCGTACCT 58.504 37.500 20.66 0.00 35.02 3.08
292 769 5.238006 TGGTCCCGCTTTAATTAATTTCG 57.762 39.130 5.91 5.62 0.00 3.46
303 780 2.041153 CTTGCTTTGGTCCCGCTTT 58.959 52.632 0.00 0.00 0.00 3.51
408 885 9.565213 CCTGACATTTTCTGAAAAATCTATGTC 57.435 33.333 25.23 25.23 41.96 3.06
409 886 9.082313 ACCTGACATTTTCTGAAAAATCTATGT 57.918 29.630 18.43 16.61 41.96 2.29
433 910 3.551551 GCACGTTTCACAAATGTCTACC 58.448 45.455 0.00 0.00 38.51 3.18
442 919 2.834574 AATGTTCGCACGTTTCACAA 57.165 40.000 0.00 0.00 0.00 3.33
453 930 8.288217 TGTTTCTACCATTTAAAAATGTTCGC 57.712 30.769 12.99 0.56 43.24 4.70
470 948 8.908678 CGCCCTACTTTTAAAAATTGTTTCTAC 58.091 33.333 1.66 0.00 0.00 2.59
599 1079 5.897377 AATATTTCGGAACAAAGGGAGTG 57.103 39.130 0.00 0.00 0.00 3.51
601 1081 6.151144 AGACAAATATTTCGGAACAAAGGGAG 59.849 38.462 0.00 0.00 0.00 4.30
602 1082 6.007703 AGACAAATATTTCGGAACAAAGGGA 58.992 36.000 0.00 0.00 0.00 4.20
603 1083 6.267496 AGACAAATATTTCGGAACAAAGGG 57.733 37.500 0.00 0.00 0.00 3.95
604 1084 8.587952 AAAAGACAAATATTTCGGAACAAAGG 57.412 30.769 0.00 0.00 0.00 3.11
632 1112 9.838339 CCTATGTGGTAGTCTATTTGAAATCTT 57.162 33.333 0.00 0.00 0.00 2.40
633 1113 9.213777 TCCTATGTGGTAGTCTATTTGAAATCT 57.786 33.333 0.00 0.00 37.07 2.40
634 1114 9.832445 TTCCTATGTGGTAGTCTATTTGAAATC 57.168 33.333 0.00 0.00 37.07 2.17
638 1118 9.090103 CCTATTCCTATGTGGTAGTCTATTTGA 57.910 37.037 0.00 0.00 37.07 2.69
639 1119 9.090103 TCCTATTCCTATGTGGTAGTCTATTTG 57.910 37.037 0.00 0.00 37.07 2.32
640 1120 9.670442 TTCCTATTCCTATGTGGTAGTCTATTT 57.330 33.333 0.00 0.00 37.07 1.40
641 1121 9.845214 ATTCCTATTCCTATGTGGTAGTCTATT 57.155 33.333 0.00 0.00 37.07 1.73
642 1122 9.261035 CATTCCTATTCCTATGTGGTAGTCTAT 57.739 37.037 0.00 0.00 37.07 1.98
643 1123 8.232412 ACATTCCTATTCCTATGTGGTAGTCTA 58.768 37.037 0.00 0.00 37.07 2.59
644 1124 7.076446 ACATTCCTATTCCTATGTGGTAGTCT 58.924 38.462 0.00 0.00 37.07 3.24
645 1125 7.304497 ACATTCCTATTCCTATGTGGTAGTC 57.696 40.000 0.00 0.00 37.07 2.59
646 1126 8.974292 ATACATTCCTATTCCTATGTGGTAGT 57.026 34.615 0.00 0.00 37.07 2.73
685 1165 8.919777 AAGCAAAATAGGTTAAACTACACTCT 57.080 30.769 1.37 0.00 0.00 3.24
686 1166 8.780249 TGAAGCAAAATAGGTTAAACTACACTC 58.220 33.333 1.37 0.00 0.00 3.51
687 1167 8.685838 TGAAGCAAAATAGGTTAAACTACACT 57.314 30.769 1.37 0.00 0.00 3.55
738 1218 9.354673 TGAAATGAAAGGAGTATTTGTCTTTCT 57.645 29.630 13.45 0.00 43.04 2.52
739 1219 9.965824 TTGAAATGAAAGGAGTATTTGTCTTTC 57.034 29.630 0.00 0.00 42.97 2.62
750 1230 9.525826 AGTCATCTATTTTGAAATGAAAGGAGT 57.474 29.630 0.00 0.00 30.45 3.85
752 1232 9.519191 TGAGTCATCTATTTTGAAATGAAAGGA 57.481 29.630 0.00 0.00 30.45 3.36
811 1291 5.237779 TCCGTTCCAAAATAGTTGACTCAAC 59.762 40.000 13.25 13.25 43.83 3.18
812 1292 5.369833 TCCGTTCCAAAATAGTTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
813 1293 4.963373 TCCGTTCCAAAATAGTTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
814 1294 5.235516 TCTCCGTTCCAAAATAGTTGACTC 58.764 41.667 0.00 0.00 0.00 3.36
815 1295 5.223449 TCTCCGTTCCAAAATAGTTGACT 57.777 39.130 0.00 0.00 0.00 3.41
816 1296 5.469084 ACTTCTCCGTTCCAAAATAGTTGAC 59.531 40.000 0.00 0.00 0.00 3.18
817 1297 5.617252 ACTTCTCCGTTCCAAAATAGTTGA 58.383 37.500 0.00 0.00 0.00 3.18
818 1298 5.941948 ACTTCTCCGTTCCAAAATAGTTG 57.058 39.130 0.00 0.00 0.00 3.16
819 1299 9.901172 ATTATACTTCTCCGTTCCAAAATAGTT 57.099 29.630 0.00 0.00 0.00 2.24
894 1374 2.506217 CACGCAGTATCGCCACGT 60.506 61.111 0.00 0.00 41.61 4.49
907 1387 2.746277 CTGGCCCAGTTACCACGC 60.746 66.667 1.39 0.00 0.00 5.34
989 1469 2.154462 GTTCAGGCATCGGATAATGGG 58.846 52.381 0.00 0.00 0.00 4.00
990 1470 2.154462 GGTTCAGGCATCGGATAATGG 58.846 52.381 0.00 0.00 0.00 3.16
991 1471 1.800586 CGGTTCAGGCATCGGATAATG 59.199 52.381 0.00 0.00 0.00 1.90
992 1472 1.878102 GCGGTTCAGGCATCGGATAAT 60.878 52.381 0.00 0.00 0.00 1.28
993 1473 0.531974 GCGGTTCAGGCATCGGATAA 60.532 55.000 0.00 0.00 0.00 1.75
1001 1481 0.107703 CATTCCTAGCGGTTCAGGCA 60.108 55.000 0.00 0.00 0.00 4.75
1432 1990 2.423577 GAATAGACGCAAACACCTGGT 58.576 47.619 0.00 0.00 0.00 4.00
1447 2005 1.006102 CAGGCGCGGGTAGGAATAG 60.006 63.158 8.83 0.00 0.00 1.73
1455 2013 3.479127 TTAACAACCAGGCGCGGGT 62.479 57.895 15.80 15.80 41.41 5.28
1464 2022 3.053544 TCCCCACAAGAACTTAACAACCA 60.054 43.478 0.00 0.00 0.00 3.67
1467 2025 5.300792 GTCAATCCCCACAAGAACTTAACAA 59.699 40.000 0.00 0.00 0.00 2.83
1472 2030 2.814097 CGGTCAATCCCCACAAGAACTT 60.814 50.000 0.00 0.00 0.00 2.66
1474 2032 1.165270 CGGTCAATCCCCACAAGAAC 58.835 55.000 0.00 0.00 0.00 3.01
1477 2035 0.881118 CAACGGTCAATCCCCACAAG 59.119 55.000 0.00 0.00 0.00 3.16
1479 2037 1.602323 GCAACGGTCAATCCCCACA 60.602 57.895 0.00 0.00 0.00 4.17
1631 2191 1.219124 GAGAAGCTGCATGTCGGGA 59.781 57.895 1.02 0.00 0.00 5.14
1691 2251 4.821260 TGACAGCATTAAGAAGCAAAGACA 59.179 37.500 0.00 0.00 0.00 3.41
1703 2263 8.556194 GGTTACGATATCAATTGACAGCATTAA 58.444 33.333 11.07 0.00 0.00 1.40
1799 2426 9.764363 CCTAGTGAGTTACATGCTCAATATAAA 57.236 33.333 8.70 0.00 43.57 1.40
1800 2427 7.872993 GCCTAGTGAGTTACATGCTCAATATAA 59.127 37.037 8.70 0.00 43.57 0.98
1801 2428 7.015195 TGCCTAGTGAGTTACATGCTCAATATA 59.985 37.037 8.70 1.74 43.57 0.86
1802 2429 6.183361 TGCCTAGTGAGTTACATGCTCAATAT 60.183 38.462 8.70 0.87 43.57 1.28
1803 2430 5.128663 TGCCTAGTGAGTTACATGCTCAATA 59.871 40.000 3.43 6.09 43.57 1.90
1804 2431 4.080919 TGCCTAGTGAGTTACATGCTCAAT 60.081 41.667 6.92 6.92 43.57 2.57
1805 2432 3.260632 TGCCTAGTGAGTTACATGCTCAA 59.739 43.478 3.43 0.00 43.57 3.02
1806 2433 2.831526 TGCCTAGTGAGTTACATGCTCA 59.168 45.455 0.00 0.00 40.28 4.26
1807 2434 3.526931 TGCCTAGTGAGTTACATGCTC 57.473 47.619 0.00 0.00 0.00 4.26
1808 2435 4.494091 AATGCCTAGTGAGTTACATGCT 57.506 40.909 0.00 0.00 0.00 3.79
1809 2436 4.731773 GCAAATGCCTAGTGAGTTACATGC 60.732 45.833 0.00 0.00 34.31 4.06
1810 2437 4.395854 TGCAAATGCCTAGTGAGTTACATG 59.604 41.667 2.46 0.00 41.18 3.21
1811 2438 4.588899 TGCAAATGCCTAGTGAGTTACAT 58.411 39.130 2.46 0.00 41.18 2.29
1812 2439 4.014569 TGCAAATGCCTAGTGAGTTACA 57.985 40.909 2.46 0.00 41.18 2.41
1813 2440 5.817816 ACTATGCAAATGCCTAGTGAGTTAC 59.182 40.000 18.52 0.00 46.01 2.50
1814 2441 5.989477 ACTATGCAAATGCCTAGTGAGTTA 58.011 37.500 18.52 0.00 46.01 2.24
1815 2442 4.848357 ACTATGCAAATGCCTAGTGAGTT 58.152 39.130 18.52 0.00 46.01 3.01
1816 2443 4.494091 ACTATGCAAATGCCTAGTGAGT 57.506 40.909 18.52 1.42 46.01 3.41
1821 2448 3.144506 CCAGGACTATGCAAATGCCTAG 58.855 50.000 13.87 13.87 42.49 3.02
1822 2449 2.158623 CCCAGGACTATGCAAATGCCTA 60.159 50.000 2.46 0.00 41.18 3.93
1823 2450 1.410648 CCCAGGACTATGCAAATGCCT 60.411 52.381 2.46 0.00 41.18 4.75
1824 2451 1.035139 CCCAGGACTATGCAAATGCC 58.965 55.000 2.46 0.00 41.18 4.40
1825 2452 1.035139 CCCCAGGACTATGCAAATGC 58.965 55.000 0.00 0.00 42.50 3.56
1826 2453 1.215173 TCCCCCAGGACTATGCAAATG 59.785 52.381 0.00 0.00 37.19 2.32
1827 2454 1.607225 TCCCCCAGGACTATGCAAAT 58.393 50.000 0.00 0.00 37.19 2.32
1828 2455 3.112878 TCCCCCAGGACTATGCAAA 57.887 52.632 0.00 0.00 37.19 3.68
1829 2456 4.931292 TCCCCCAGGACTATGCAA 57.069 55.556 0.00 0.00 37.19 4.08
1838 2465 4.708421 CAGATATGCAATTTATCCCCCAGG 59.292 45.833 0.00 0.00 0.00 4.45
1839 2466 5.573219 TCAGATATGCAATTTATCCCCCAG 58.427 41.667 0.00 0.00 0.00 4.45
1840 2467 5.597430 TCAGATATGCAATTTATCCCCCA 57.403 39.130 0.00 0.00 0.00 4.96
1841 2468 7.486407 AAATCAGATATGCAATTTATCCCCC 57.514 36.000 0.00 0.00 0.00 5.40
1871 2498 7.453393 TGAGTCACTAGATCAACTTTCCAAAT 58.547 34.615 0.00 0.00 0.00 2.32
1897 2524 3.749088 CACCACAGTATCCAAACGCTAAA 59.251 43.478 0.00 0.00 0.00 1.85
1899 2526 2.354303 CCACCACAGTATCCAAACGCTA 60.354 50.000 0.00 0.00 0.00 4.26
1900 2527 1.610624 CCACCACAGTATCCAAACGCT 60.611 52.381 0.00 0.00 0.00 5.07
1947 2656 1.757699 AGGGTAGAGTCAATCCGAAGC 59.242 52.381 0.00 0.00 0.00 3.86
1951 2661 3.292460 AGAAGAGGGTAGAGTCAATCCG 58.708 50.000 0.00 0.00 0.00 4.18
2003 2718 6.176014 AGTAAAGTGAACTTTAGGAGCACT 57.824 37.500 14.41 8.04 45.76 4.40
2038 2753 6.708054 TGAAATGTTTATTTGTTTTGGGCGAT 59.292 30.769 0.00 0.00 36.66 4.58
2040 2755 6.292389 TGAAATGTTTATTTGTTTTGGGCG 57.708 33.333 0.00 0.00 36.66 6.13
2159 2874 1.489230 ACAAAAGTCCCACGAGAACCT 59.511 47.619 0.00 0.00 0.00 3.50
2195 2920 7.312657 AGTACAGCACTGAATCAATGTAATG 57.687 36.000 4.31 0.00 35.62 1.90
2221 2946 6.959639 ATGTATACAATTAACAGCCCCTTG 57.040 37.500 10.14 0.00 0.00 3.61
2222 2947 7.122715 TCAATGTATACAATTAACAGCCCCTT 58.877 34.615 10.14 0.00 0.00 3.95
2258 5750 4.447724 ACATGACAAGCTAACGTAACAGTG 59.552 41.667 0.00 0.00 0.00 3.66
2267 5759 7.244192 GGAATAACTGAACATGACAAGCTAAC 58.756 38.462 0.00 0.00 0.00 2.34
2329 8058 4.929211 CAGAACCAGACGTGTAATGAATCA 59.071 41.667 0.00 0.00 0.00 2.57
2336 8065 4.613944 CAGTTACAGAACCAGACGTGTAA 58.386 43.478 0.00 0.00 36.08 2.41
2427 8182 5.451242 GCACTTGTGTTACCAGGATGAAAAA 60.451 40.000 0.00 0.00 39.69 1.94
2435 8190 1.238439 CCTGCACTTGTGTTACCAGG 58.762 55.000 9.54 9.54 0.00 4.45
2591 8346 5.163683 CGAGTGCAATGAGAAAAGAATGGAT 60.164 40.000 0.00 0.00 0.00 3.41
2640 8396 6.688073 AAGGTGAAAGATTAGTTCTGAGGA 57.312 37.500 0.00 0.00 33.93 3.71
2705 8461 2.596851 GGAGCCTGGCCACTCAAGA 61.597 63.158 21.39 0.00 34.48 3.02
2834 8590 6.252599 AGCATTTAGATATGGAGACCAACA 57.747 37.500 0.00 0.00 36.95 3.33
2951 8707 5.333299 TGTAGATTTTAGGCGCAAGAGTA 57.667 39.130 10.83 0.00 43.02 2.59
2993 8752 1.692519 ACCTTGCAGAGAACCGTAAGT 59.307 47.619 0.00 0.00 0.00 2.24
3062 8821 0.179000 CCCACGATTCTCCTTCAGGG 59.821 60.000 0.00 0.00 35.41 4.45
3064 8823 1.827969 ACTCCCACGATTCTCCTTCAG 59.172 52.381 0.00 0.00 0.00 3.02
3159 8918 4.285863 CCCCTCCAGCAAAATTATGGTAA 58.714 43.478 0.00 0.00 35.51 2.85
3222 8981 0.471617 AATCATCCTCCTCCGGCTTG 59.528 55.000 0.00 0.00 0.00 4.01
3272 9032 4.278419 CAGGCCCAGCAAAATAACCTATAC 59.722 45.833 0.00 0.00 0.00 1.47
3310 9156 6.986817 CCATAAGTACTGAAGATACAACCAGG 59.013 42.308 0.00 0.00 0.00 4.45
3315 9161 9.031537 TCAGTTCCATAAGTACTGAAGATACAA 57.968 33.333 0.00 0.00 43.72 2.41
3363 9209 4.866508 AGGTTACGACAAGTCATCTGAA 57.133 40.909 0.72 0.00 0.00 3.02
3545 9396 8.020819 CGTGTCAATAGTTTTTGTAATCCACAT 58.979 33.333 0.00 0.00 36.90 3.21
3546 9397 7.226918 TCGTGTCAATAGTTTTTGTAATCCACA 59.773 33.333 0.00 0.00 34.51 4.17
3552 9422 8.199176 TCAGTTCGTGTCAATAGTTTTTGTAA 57.801 30.769 0.00 0.00 0.00 2.41
3612 9484 6.998673 AGTCATTAACCTAGCCATGGATAAAC 59.001 38.462 18.40 0.00 0.00 2.01
3681 9627 1.272425 CCACCAGTCCTTAATGCCCAA 60.272 52.381 0.00 0.00 0.00 4.12
3825 9777 0.321671 GTGGCCTGTTGAGAGCAGTA 59.678 55.000 3.32 0.00 32.41 2.74
3929 9894 1.520590 GCGAAAACGTACCGTACACAA 59.479 47.619 9.34 0.00 39.99 3.33
3940 9905 4.062991 AGAATAAACAGGAGCGAAAACGT 58.937 39.130 0.00 0.00 0.00 3.99
3964 9947 3.181497 GCAAGCACATTATGTACAGGGTG 60.181 47.826 0.33 8.00 0.00 4.61
4097 10184 5.154222 CCGTTGCAGATAAAAAGAACTTCC 58.846 41.667 0.00 0.00 0.00 3.46
4141 10230 6.825944 TCGTTGGTGATAAATGAATGGAAA 57.174 33.333 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.