Multiple sequence alignment - TraesCS7A01G068000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G068000 chr7A 100.000 4828 0 0 1 4828 34107556 34102729 0.000000e+00 8916.0
1 TraesCS7A01G068000 chr7A 83.307 641 46 36 1243 1868 34519344 34518750 7.110000e-148 534.0
2 TraesCS7A01G068000 chr7A 76.726 507 61 36 3096 3589 34451022 34450560 3.760000e-56 230.0
3 TraesCS7A01G068000 chr7A 81.858 226 29 7 4287 4500 34103119 34102894 3.840000e-41 180.0
4 TraesCS7A01G068000 chr7A 81.858 226 29 7 4438 4663 34103270 34103057 3.840000e-41 180.0
5 TraesCS7A01G068000 chr7A 96.970 66 2 0 344 409 34452845 34452780 1.420000e-20 111.0
6 TraesCS7A01G068000 chr7A 94.643 56 2 1 354 409 34520085 34520031 8.610000e-13 86.1
7 TraesCS7A01G068000 chr7D 90.664 4370 245 71 344 4663 33753978 33758234 0.000000e+00 5659.0
8 TraesCS7A01G068000 chr7D 82.943 897 85 41 1000 1868 34077173 34076317 0.000000e+00 747.0
9 TraesCS7A01G068000 chr7D 82.618 909 75 48 997 1868 34444963 34445825 0.000000e+00 726.0
10 TraesCS7A01G068000 chr7D 84.544 757 62 34 997 1730 34011780 34011056 0.000000e+00 699.0
11 TraesCS7A01G068000 chr7D 86.691 556 38 13 4277 4828 33758163 33758686 6.960000e-163 584.0
12 TraesCS7A01G068000 chr7D 79.959 489 64 24 3096 3570 34010906 34010438 3.600000e-86 329.0
13 TraesCS7A01G068000 chr7D 79.608 510 53 27 3096 3587 34074563 34074087 7.800000e-83 318.0
14 TraesCS7A01G068000 chr7D 77.930 512 53 32 3099 3589 34446696 34447168 1.030000e-66 265.0
15 TraesCS7A01G068000 chr7D 78.571 280 33 17 4287 4555 33758020 33758283 5.000000e-35 159.0
16 TraesCS7A01G068000 chr7D 95.000 100 4 1 701 799 34444749 34444848 6.470000e-34 156.0
17 TraesCS7A01G068000 chr7D 96.491 57 1 1 354 409 34444538 34444594 5.150000e-15 93.5
18 TraesCS7A01G068000 chr7D 88.889 72 8 0 3749 3820 34149353 34149282 6.660000e-14 89.8
19 TraesCS7A01G068000 chr4A 91.726 1970 113 19 2880 4828 691468303 691466363 0.000000e+00 2689.0
20 TraesCS7A01G068000 chr4A 90.904 1737 93 29 352 2061 691470758 691469060 0.000000e+00 2272.0
21 TraesCS7A01G068000 chr4A 91.922 619 33 8 997 1608 691166496 691167104 0.000000e+00 850.0
22 TraesCS7A01G068000 chr4A 82.780 964 104 39 997 1935 691246759 691247685 0.000000e+00 804.0
23 TraesCS7A01G068000 chr4A 83.849 873 80 33 1000 1857 691150635 691151461 0.000000e+00 774.0
24 TraesCS7A01G068000 chr4A 81.696 967 101 52 997 1943 691323852 691324762 0.000000e+00 736.0
25 TraesCS7A01G068000 chr4A 82.604 914 76 38 1000 1868 690938247 690937372 0.000000e+00 730.0
26 TraesCS7A01G068000 chr4A 88.021 576 36 16 1000 1542 690689422 690688847 0.000000e+00 651.0
27 TraesCS7A01G068000 chr4A 84.639 664 38 28 2106 2741 691469053 691468426 1.920000e-168 603.0
28 TraesCS7A01G068000 chr4A 92.120 368 17 6 1244 1608 690886690 690886332 4.310000e-140 508.0
29 TraesCS7A01G068000 chr4A 98.857 175 2 0 1000 1174 690886972 690886798 3.630000e-81 313.0
30 TraesCS7A01G068000 chr4A 78.990 495 46 29 3096 3570 691325185 691325641 7.910000e-73 285.0
31 TraesCS7A01G068000 chr4A 78.514 498 53 26 3113 3589 690885071 690884607 1.320000e-70 278.0
32 TraesCS7A01G068000 chr4A 78.163 490 55 28 3096 3562 691168581 691169041 1.030000e-66 265.0
33 TraesCS7A01G068000 chr4A 78.326 466 48 28 3128 3574 691248493 691248924 8.020000e-63 252.0
34 TraesCS7A01G068000 chr4A 76.353 351 44 23 3251 3589 690879944 690879621 8.370000e-33 152.0
35 TraesCS7A01G068000 chr4A 89.583 96 7 3 344 436 691323509 691323604 8.490000e-23 119.0
36 TraesCS7A01G068000 chr4A 96.875 64 2 0 346 409 690881946 690881883 1.840000e-19 108.0
37 TraesCS7A01G068000 chr4A 86.047 86 8 1 1783 1868 690688709 690688628 6.660000e-14 89.8
38 TraesCS7A01G068000 chr4A 94.872 39 2 0 534 572 690881789 690881751 1.450000e-05 62.1
39 TraesCS7A01G068000 chr6A 99.259 135 1 0 1 135 11919328 11919194 1.340000e-60 244.0
40 TraesCS7A01G068000 chr6A 99.259 135 1 0 1 135 52660164 52660298 1.340000e-60 244.0
41 TraesCS7A01G068000 chr6A 99.259 135 1 0 1 135 528862266 528862400 1.340000e-60 244.0
42 TraesCS7A01G068000 chr6A 99.259 135 1 0 1 135 594897223 594897357 1.340000e-60 244.0
43 TraesCS7A01G068000 chr5A 99.259 135 1 0 1 135 30830106 30829972 1.340000e-60 244.0
44 TraesCS7A01G068000 chr1A 99.259 135 1 0 1 135 126509673 126509807 1.340000e-60 244.0
45 TraesCS7A01G068000 chr1A 99.259 135 1 0 1 135 500906641 500906507 1.340000e-60 244.0
46 TraesCS7A01G068000 chr1A 99.259 135 1 0 1 135 518714069 518714203 1.340000e-60 244.0
47 TraesCS7A01G068000 chr1A 99.259 135 1 0 1 135 532527386 532527520 1.340000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G068000 chr7A 34102729 34107556 4827 True 8916.000000 8916 100.000000 1 4828 1 chr7A.!!$R1 4827
1 TraesCS7A01G068000 chr7A 34518750 34520085 1335 True 310.050000 534 88.975000 354 1868 2 chr7A.!!$R4 1514
2 TraesCS7A01G068000 chr7D 33753978 33758686 4708 False 2134.000000 5659 85.308667 344 4828 3 chr7D.!!$F1 4484
3 TraesCS7A01G068000 chr7D 34074087 34077173 3086 True 532.500000 747 81.275500 1000 3587 2 chr7D.!!$R3 2587
4 TraesCS7A01G068000 chr7D 34010438 34011780 1342 True 514.000000 699 82.251500 997 3570 2 chr7D.!!$R2 2573
5 TraesCS7A01G068000 chr7D 34444538 34447168 2630 False 310.125000 726 88.009750 354 3589 4 chr7D.!!$F2 3235
6 TraesCS7A01G068000 chr4A 691466363 691470758 4395 True 1854.666667 2689 89.089667 352 4828 3 chr4A.!!$R4 4476
7 TraesCS7A01G068000 chr4A 691150635 691151461 826 False 774.000000 774 83.849000 1000 1857 1 chr4A.!!$F1 857
8 TraesCS7A01G068000 chr4A 690937372 690938247 875 True 730.000000 730 82.604000 1000 1868 1 chr4A.!!$R1 868
9 TraesCS7A01G068000 chr4A 691166496 691169041 2545 False 557.500000 850 85.042500 997 3562 2 chr4A.!!$F2 2565
10 TraesCS7A01G068000 chr4A 691246759 691248924 2165 False 528.000000 804 80.553000 997 3574 2 chr4A.!!$F3 2577
11 TraesCS7A01G068000 chr4A 691323509 691325641 2132 False 380.000000 736 83.423000 344 3570 3 chr4A.!!$F4 3226
12 TraesCS7A01G068000 chr4A 690688628 690689422 794 True 370.400000 651 87.034000 1000 1868 2 chr4A.!!$R2 868
13 TraesCS7A01G068000 chr4A 690879621 690886972 7351 True 236.850000 508 89.598500 346 3589 6 chr4A.!!$R3 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.036164 TGTACACCTCCACACATGGC 59.964 55.0 0.00 0.0 46.80 4.40 F
334 335 0.250989 AACCGGGATCGCTGGAAAAA 60.251 50.0 21.36 0.0 34.56 1.94 F
1803 6939 0.385751 ATGCGACTGTAGACGATGGG 59.614 55.0 7.86 0.0 35.37 4.00 F
2427 9586 0.175760 CGTCAGGACATGGAACGGAT 59.824 55.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 8812 0.168128 GACCAAGATTTTCCCGTGCG 59.832 55.0 0.00 0.00 0.00 5.34 R
2214 8864 0.944311 TCAGGAGAAGAAACACGCGC 60.944 55.0 5.73 0.00 0.00 6.86 R
2812 10021 0.813184 CCATCGCAGTTCCATTTGCT 59.187 50.0 0.00 0.00 38.16 3.91 R
3937 11300 1.159098 ACGTAGAGAGGTCGATCGGC 61.159 60.0 16.41 14.41 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.599584 CGGAGCAGTCGGGAAGTA 58.400 61.111 0.00 0.00 0.00 2.24
19 20 1.139095 CGGAGCAGTCGGGAAGTAC 59.861 63.158 0.00 0.00 0.00 2.73
20 21 1.313812 CGGAGCAGTCGGGAAGTACT 61.314 60.000 0.00 0.00 0.00 2.73
22 23 0.889306 GAGCAGTCGGGAAGTACTGT 59.111 55.000 0.00 0.00 44.03 3.55
23 24 0.889306 AGCAGTCGGGAAGTACTGTC 59.111 55.000 0.00 0.00 44.03 3.51
24 25 0.601558 GCAGTCGGGAAGTACTGTCA 59.398 55.000 0.00 0.00 44.03 3.58
25 26 1.402984 GCAGTCGGGAAGTACTGTCAG 60.403 57.143 0.00 0.00 44.03 3.51
26 27 1.887198 CAGTCGGGAAGTACTGTCAGT 59.113 52.381 10.99 10.99 38.62 3.41
28 29 1.884579 GTCGGGAAGTACTGTCAGTGA 59.115 52.381 16.03 0.00 0.00 3.41
30 31 2.753452 TCGGGAAGTACTGTCAGTGATC 59.247 50.000 16.03 10.20 0.00 2.92
31 32 2.492088 CGGGAAGTACTGTCAGTGATCA 59.508 50.000 16.03 0.00 0.00 2.92
32 33 3.056821 CGGGAAGTACTGTCAGTGATCAA 60.057 47.826 16.03 0.00 0.00 2.57
33 34 4.560716 CGGGAAGTACTGTCAGTGATCAAA 60.561 45.833 16.03 0.00 0.00 2.69
34 35 4.932200 GGGAAGTACTGTCAGTGATCAAAG 59.068 45.833 16.03 0.00 0.00 2.77
35 36 4.932200 GGAAGTACTGTCAGTGATCAAAGG 59.068 45.833 16.03 0.00 0.00 3.11
36 37 3.931578 AGTACTGTCAGTGATCAAAGGC 58.068 45.455 16.03 0.00 0.00 4.35
37 38 3.580458 AGTACTGTCAGTGATCAAAGGCT 59.420 43.478 16.03 0.00 0.00 4.58
38 39 2.775890 ACTGTCAGTGATCAAAGGCTG 58.224 47.619 4.21 0.22 0.00 4.85
39 40 2.369860 ACTGTCAGTGATCAAAGGCTGA 59.630 45.455 4.21 9.13 38.81 4.26
40 41 3.181451 ACTGTCAGTGATCAAAGGCTGAA 60.181 43.478 13.60 5.87 39.33 3.02
41 42 3.817084 CTGTCAGTGATCAAAGGCTGAAA 59.183 43.478 13.60 8.93 39.33 2.69
43 44 4.067896 GTCAGTGATCAAAGGCTGAAAGA 58.932 43.478 13.60 0.00 39.33 2.52
44 45 4.516698 GTCAGTGATCAAAGGCTGAAAGAA 59.483 41.667 13.60 0.00 39.33 2.52
46 47 3.499918 AGTGATCAAAGGCTGAAAGAACG 59.500 43.478 0.00 0.00 37.67 3.95
47 48 3.498397 GTGATCAAAGGCTGAAAGAACGA 59.502 43.478 0.00 0.00 37.67 3.85
48 49 3.498397 TGATCAAAGGCTGAAAGAACGAC 59.502 43.478 0.00 0.00 37.67 4.34
49 50 1.864711 TCAAAGGCTGAAAGAACGACG 59.135 47.619 0.00 0.00 34.07 5.12
50 51 1.864711 CAAAGGCTGAAAGAACGACGA 59.135 47.619 0.00 0.00 34.07 4.20
51 52 1.784525 AAGGCTGAAAGAACGACGAG 58.215 50.000 0.00 0.00 34.07 4.18
53 54 0.667792 GGCTGAAAGAACGACGAGCT 60.668 55.000 0.00 0.00 34.07 4.09
54 55 0.436531 GCTGAAAGAACGACGAGCTG 59.563 55.000 0.00 0.00 34.07 4.24
55 56 1.063806 CTGAAAGAACGACGAGCTGG 58.936 55.000 0.00 0.00 34.07 4.85
56 57 0.319555 TGAAAGAACGACGAGCTGGG 60.320 55.000 0.00 0.00 0.00 4.45
57 58 0.038526 GAAAGAACGACGAGCTGGGA 60.039 55.000 0.00 0.00 0.00 4.37
59 60 0.391597 AAGAACGACGAGCTGGGAAA 59.608 50.000 0.00 0.00 0.00 3.13
60 61 0.319641 AGAACGACGAGCTGGGAAAC 60.320 55.000 0.00 0.00 0.00 2.78
61 62 0.599204 GAACGACGAGCTGGGAAACA 60.599 55.000 0.00 0.00 0.00 2.83
63 64 0.179067 ACGACGAGCTGGGAAACAAA 60.179 50.000 0.00 0.00 0.00 2.83
64 65 1.156736 CGACGAGCTGGGAAACAAAT 58.843 50.000 0.00 0.00 0.00 2.32
65 66 1.535462 CGACGAGCTGGGAAACAAATT 59.465 47.619 0.00 0.00 0.00 1.82
67 68 1.000274 ACGAGCTGGGAAACAAATTGC 60.000 47.619 0.00 0.00 0.00 3.56
72 73 3.231734 GGGAAACAAATTGCCCAGC 57.768 52.632 0.00 0.00 43.39 4.85
73 74 0.686789 GGGAAACAAATTGCCCAGCT 59.313 50.000 0.00 0.00 43.39 4.24
74 75 1.338105 GGGAAACAAATTGCCCAGCTC 60.338 52.381 0.00 0.00 43.39 4.09
75 76 1.669795 GGAAACAAATTGCCCAGCTCG 60.670 52.381 0.00 0.00 0.00 5.03
76 77 0.318120 AAACAAATTGCCCAGCTCGG 59.682 50.000 0.00 0.00 0.00 4.63
84 85 3.121030 CCCAGCTCGGCGAACAAG 61.121 66.667 12.13 3.32 0.00 3.16
86 87 4.139420 CAGCTCGGCGAACAAGCG 62.139 66.667 12.13 0.00 40.95 4.68
87 88 4.357947 AGCTCGGCGAACAAGCGA 62.358 61.111 12.13 0.00 40.95 4.93
88 89 3.411351 GCTCGGCGAACAAGCGAA 61.411 61.111 12.13 0.00 38.18 4.70
89 90 2.772189 CTCGGCGAACAAGCGAAG 59.228 61.111 12.13 0.00 38.18 3.79
117 118 3.399181 CCCCGCTCAAGGTGCCTA 61.399 66.667 0.00 0.00 0.00 3.93
118 119 2.187946 CCCGCTCAAGGTGCCTAG 59.812 66.667 0.00 0.00 0.00 3.02
119 120 2.512515 CCGCTCAAGGTGCCTAGC 60.513 66.667 3.51 3.51 0.00 3.42
121 122 2.579201 GCTCAAGGTGCCTAGCGA 59.421 61.111 0.00 0.00 0.00 4.93
122 123 1.811679 GCTCAAGGTGCCTAGCGAC 60.812 63.158 0.00 0.00 0.00 5.19
123 124 1.591703 CTCAAGGTGCCTAGCGACA 59.408 57.895 0.00 0.00 0.00 4.35
124 125 0.037326 CTCAAGGTGCCTAGCGACAA 60.037 55.000 0.00 0.00 0.00 3.18
125 126 0.320421 TCAAGGTGCCTAGCGACAAC 60.320 55.000 0.00 0.00 0.00 3.32
126 127 1.374252 AAGGTGCCTAGCGACAACG 60.374 57.895 0.00 0.00 42.93 4.10
127 128 2.048503 GGTGCCTAGCGACAACGT 60.049 61.111 0.00 0.00 41.98 3.99
128 129 2.092882 GGTGCCTAGCGACAACGTC 61.093 63.158 0.00 0.00 41.98 4.34
141 142 4.385244 GACAACGTCGCTAATTTTGACT 57.615 40.909 0.00 0.00 0.00 3.41
142 143 5.505165 GACAACGTCGCTAATTTTGACTA 57.495 39.130 0.00 0.00 0.00 2.59
143 144 5.260027 ACAACGTCGCTAATTTTGACTAC 57.740 39.130 0.00 0.00 0.00 2.73
144 145 4.746115 ACAACGTCGCTAATTTTGACTACA 59.254 37.500 0.00 0.00 0.00 2.74
147 148 6.476243 ACGTCGCTAATTTTGACTACAAAT 57.524 33.333 0.00 0.00 43.99 2.32
148 149 6.531439 ACGTCGCTAATTTTGACTACAAATC 58.469 36.000 0.00 0.00 43.99 2.17
150 151 7.148474 ACGTCGCTAATTTTGACTACAAATCAT 60.148 33.333 0.00 0.00 43.99 2.45
151 152 8.325282 CGTCGCTAATTTTGACTACAAATCATA 58.675 33.333 0.00 0.00 43.99 2.15
152 153 9.422196 GTCGCTAATTTTGACTACAAATCATAC 57.578 33.333 0.00 0.00 43.99 2.39
154 155 7.855904 CGCTAATTTTGACTACAAATCATACCC 59.144 37.037 0.00 0.00 43.99 3.69
155 156 8.903820 GCTAATTTTGACTACAAATCATACCCT 58.096 33.333 0.00 0.00 43.99 4.34
159 160 9.838339 ATTTTGACTACAAATCATACCCTCTAG 57.162 33.333 0.00 0.00 43.99 2.43
161 162 7.584122 TGACTACAAATCATACCCTCTAGTC 57.416 40.000 0.00 0.00 32.78 2.59
162 163 7.123383 TGACTACAAATCATACCCTCTAGTCA 58.877 38.462 0.00 0.00 37.55 3.41
163 164 7.068348 TGACTACAAATCATACCCTCTAGTCAC 59.932 40.741 0.00 0.00 35.87 3.67
164 165 7.126733 ACTACAAATCATACCCTCTAGTCACT 58.873 38.462 0.00 0.00 0.00 3.41
165 166 6.875972 ACAAATCATACCCTCTAGTCACTT 57.124 37.500 0.00 0.00 0.00 3.16
166 167 7.259088 ACAAATCATACCCTCTAGTCACTTT 57.741 36.000 0.00 0.00 0.00 2.66
167 168 7.106239 ACAAATCATACCCTCTAGTCACTTTG 58.894 38.462 0.00 0.00 0.00 2.77
169 170 4.353777 TCATACCCTCTAGTCACTTTGCT 58.646 43.478 0.00 0.00 0.00 3.91
170 171 4.160439 TCATACCCTCTAGTCACTTTGCTG 59.840 45.833 0.00 0.00 0.00 4.41
171 172 2.330216 ACCCTCTAGTCACTTTGCTGT 58.670 47.619 0.00 0.00 0.00 4.40
174 175 2.613977 CCTCTAGTCACTTTGCTGTGGG 60.614 54.545 0.00 0.00 38.40 4.61
175 176 1.347707 TCTAGTCACTTTGCTGTGGGG 59.652 52.381 0.00 0.00 38.40 4.96
176 177 0.250727 TAGTCACTTTGCTGTGGGGC 60.251 55.000 0.00 0.00 38.40 5.80
177 178 2.203480 TCACTTTGCTGTGGGGCC 60.203 61.111 0.00 0.00 38.40 5.80
179 180 2.116125 ACTTTGCTGTGGGGCCTC 59.884 61.111 0.84 0.00 0.00 4.70
180 181 2.677875 CTTTGCTGTGGGGCCTCC 60.678 66.667 0.00 0.72 0.00 4.30
181 182 3.185203 TTTGCTGTGGGGCCTCCT 61.185 61.111 0.00 0.00 36.20 3.69
182 183 3.210012 TTTGCTGTGGGGCCTCCTC 62.210 63.158 0.00 2.49 36.20 3.71
186 187 4.392166 TGTGGGGCCTCCTCGCTA 62.392 66.667 0.00 0.00 36.20 4.26
187 188 3.541713 GTGGGGCCTCCTCGCTAG 61.542 72.222 0.00 0.00 36.20 3.42
190 191 3.922640 GGGCCTCCTCGCTAGCTG 61.923 72.222 13.93 6.69 0.00 4.24
192 193 2.415426 GCCTCCTCGCTAGCTGTC 59.585 66.667 13.93 0.00 0.00 3.51
193 194 3.124686 CCTCCTCGCTAGCTGTCC 58.875 66.667 13.93 0.00 0.00 4.02
194 195 2.494530 CCTCCTCGCTAGCTGTCCC 61.495 68.421 13.93 0.00 0.00 4.46
195 196 1.754621 CTCCTCGCTAGCTGTCCCA 60.755 63.158 13.93 0.00 0.00 4.37
197 198 2.103143 CTCGCTAGCTGTCCCACG 59.897 66.667 13.93 0.00 0.00 4.94
198 199 4.129737 TCGCTAGCTGTCCCACGC 62.130 66.667 13.93 0.00 0.00 5.34
200 201 4.436998 GCTAGCTGTCCCACGCGT 62.437 66.667 5.58 5.58 0.00 6.01
202 203 2.986979 TAGCTGTCCCACGCGTCA 60.987 61.111 9.86 2.86 0.00 4.35
203 204 3.277211 TAGCTGTCCCACGCGTCAC 62.277 63.158 9.86 7.22 0.00 3.67
204 205 4.961511 GCTGTCCCACGCGTCACA 62.962 66.667 9.86 11.98 0.00 3.58
205 206 2.734723 CTGTCCCACGCGTCACAG 60.735 66.667 21.61 21.61 0.00 3.66
207 208 2.430921 GTCCCACGCGTCACAGAG 60.431 66.667 9.86 0.00 0.00 3.35
208 209 2.596338 TCCCACGCGTCACAGAGA 60.596 61.111 9.86 0.00 0.00 3.10
209 210 2.126307 CCCACGCGTCACAGAGAG 60.126 66.667 9.86 0.00 0.00 3.20
210 211 2.626780 CCCACGCGTCACAGAGAGA 61.627 63.158 9.86 0.00 0.00 3.10
212 213 0.109086 CCACGCGTCACAGAGAGAAT 60.109 55.000 9.86 0.00 0.00 2.40
213 214 0.987715 CACGCGTCACAGAGAGAATG 59.012 55.000 9.86 0.00 0.00 2.67
214 215 0.598562 ACGCGTCACAGAGAGAATGT 59.401 50.000 5.58 0.00 0.00 2.71
215 216 1.810755 ACGCGTCACAGAGAGAATGTA 59.189 47.619 5.58 0.00 0.00 2.29
216 217 2.228103 ACGCGTCACAGAGAGAATGTAA 59.772 45.455 5.58 0.00 0.00 2.41
217 218 3.119459 ACGCGTCACAGAGAGAATGTAAT 60.119 43.478 5.58 0.00 0.00 1.89
218 219 4.095932 ACGCGTCACAGAGAGAATGTAATA 59.904 41.667 5.58 0.00 0.00 0.98
220 221 5.116225 CGCGTCACAGAGAGAATGTAATATG 59.884 44.000 0.00 0.00 0.00 1.78
221 222 6.209361 GCGTCACAGAGAGAATGTAATATGA 58.791 40.000 0.00 0.00 0.00 2.15
224 225 7.864882 CGTCACAGAGAGAATGTAATATGATGT 59.135 37.037 0.00 0.00 0.00 3.06
235 236 9.411801 GAATGTAATATGATGTACATGAGTCGT 57.588 33.333 14.43 3.54 39.47 4.34
237 238 9.841880 ATGTAATATGATGTACATGAGTCGTAC 57.158 33.333 14.43 8.75 39.04 3.67
243 244 4.181309 TGTACATGAGTCGTACAATGCA 57.819 40.909 0.00 0.00 44.63 3.96
244 245 4.754322 TGTACATGAGTCGTACAATGCAT 58.246 39.130 0.00 0.00 44.63 3.96
245 246 5.897050 TGTACATGAGTCGTACAATGCATA 58.103 37.500 0.00 0.00 44.63 3.14
246 247 5.977129 TGTACATGAGTCGTACAATGCATAG 59.023 40.000 0.00 0.00 44.63 2.23
247 248 5.011090 ACATGAGTCGTACAATGCATAGT 57.989 39.130 0.00 0.00 0.00 2.12
248 249 6.144078 ACATGAGTCGTACAATGCATAGTA 57.856 37.500 0.00 0.00 0.00 1.82
249 250 5.977725 ACATGAGTCGTACAATGCATAGTAC 59.022 40.000 0.00 0.00 37.75 2.73
250 251 5.570234 TGAGTCGTACAATGCATAGTACA 57.430 39.130 0.00 0.00 40.37 2.90
251 252 5.956642 TGAGTCGTACAATGCATAGTACAA 58.043 37.500 0.00 0.00 40.37 2.41
252 253 5.803461 TGAGTCGTACAATGCATAGTACAAC 59.197 40.000 0.00 0.00 40.37 3.32
253 254 5.962433 AGTCGTACAATGCATAGTACAACT 58.038 37.500 0.00 0.00 40.37 3.16
254 255 5.805486 AGTCGTACAATGCATAGTACAACTG 59.195 40.000 0.00 0.00 37.17 3.16
255 256 5.575606 GTCGTACAATGCATAGTACAACTGT 59.424 40.000 0.00 0.01 40.37 3.55
257 258 7.434307 GTCGTACAATGCATAGTACAACTGTAT 59.566 37.037 0.00 0.00 40.37 2.29
258 259 8.623030 TCGTACAATGCATAGTACAACTGTATA 58.377 33.333 0.00 0.00 40.37 1.47
264 265 9.976511 AATGCATAGTACAACTGTATAATACGT 57.023 29.630 0.00 0.00 32.54 3.57
270 271 8.696043 AGTACAACTGTATAATACGTATCCCA 57.304 34.615 8.86 2.82 32.54 4.37
272 273 9.350357 GTACAACTGTATAATACGTATCCCATG 57.650 37.037 8.86 3.61 32.54 3.66
273 274 7.959175 ACAACTGTATAATACGTATCCCATGT 58.041 34.615 8.86 4.18 0.00 3.21
274 275 7.870954 ACAACTGTATAATACGTATCCCATGTG 59.129 37.037 8.86 3.96 0.00 3.21
275 276 7.534723 ACTGTATAATACGTATCCCATGTGT 57.465 36.000 8.86 0.93 0.00 3.72
276 277 8.640063 ACTGTATAATACGTATCCCATGTGTA 57.360 34.615 8.86 0.00 0.00 2.90
277 278 8.517878 ACTGTATAATACGTATCCCATGTGTAC 58.482 37.037 8.86 5.72 0.00 2.90
279 280 8.298854 TGTATAATACGTATCCCATGTGTACAC 58.701 37.037 19.36 19.36 0.00 2.90
282 283 2.429610 ACGTATCCCATGTGTACACCTC 59.570 50.000 22.91 0.00 0.00 3.85
284 285 1.965414 ATCCCATGTGTACACCTCCA 58.035 50.000 22.91 4.90 0.00 3.86
285 286 0.981183 TCCCATGTGTACACCTCCAC 59.019 55.000 22.91 0.00 0.00 4.02
286 287 0.690192 CCCATGTGTACACCTCCACA 59.310 55.000 22.91 3.73 44.91 4.17
287 288 1.610624 CCCATGTGTACACCTCCACAC 60.611 57.143 22.91 0.00 43.75 3.82
292 293 0.036164 TGTACACCTCCACACATGGC 59.964 55.000 0.00 0.00 46.80 4.40
293 294 1.019278 GTACACCTCCACACATGGCG 61.019 60.000 0.00 0.00 46.80 5.69
294 295 1.188871 TACACCTCCACACATGGCGA 61.189 55.000 0.00 0.00 46.80 5.54
303 304 2.827190 ACATGGCGAGCATGCAGG 60.827 61.111 21.98 12.13 36.28 4.85
304 305 4.266070 CATGGCGAGCATGCAGGC 62.266 66.667 25.44 25.44 36.28 4.85
305 306 4.807631 ATGGCGAGCATGCAGGCA 62.808 61.111 32.52 32.52 44.36 4.75
312 313 4.794648 GCATGCAGGCACCCGGTA 62.795 66.667 20.11 0.00 0.00 4.02
315 316 2.297895 ATGCAGGCACCCGGTAGAA 61.298 57.895 0.00 0.00 0.00 2.10
316 317 1.847798 ATGCAGGCACCCGGTAGAAA 61.848 55.000 0.00 0.00 0.00 2.52
317 318 2.038837 GCAGGCACCCGGTAGAAAC 61.039 63.158 0.00 0.00 0.00 2.78
318 319 1.376812 CAGGCACCCGGTAGAAACC 60.377 63.158 0.00 0.00 42.95 3.27
327 328 1.821258 GGTAGAAACCGGGATCGCT 59.179 57.895 6.32 0.00 35.62 4.93
329 330 0.529992 GTAGAAACCGGGATCGCTGG 60.530 60.000 6.32 15.57 34.56 4.85
331 332 1.078708 GAAACCGGGATCGCTGGAA 60.079 57.895 21.36 0.00 34.56 3.53
334 335 0.250989 AACCGGGATCGCTGGAAAAA 60.251 50.000 21.36 0.00 34.56 1.94
666 5444 3.289834 GGCTGTGCCTGTGTGTGG 61.290 66.667 0.73 0.00 46.69 4.17
668 5446 2.256591 GCTGTGCCTGTGTGTGGAG 61.257 63.158 0.00 0.00 0.00 3.86
669 5447 2.203195 TGTGCCTGTGTGTGGAGC 60.203 61.111 0.00 0.00 0.00 4.70
670 5448 2.111878 GTGCCTGTGTGTGGAGCT 59.888 61.111 0.00 0.00 0.00 4.09
773 5553 1.337118 GGCAACAACTTCATTCCCCA 58.663 50.000 0.00 0.00 0.00 4.96
830 5624 2.961741 TCCTTCGATCCATCTCCTTCAG 59.038 50.000 0.00 0.00 0.00 3.02
835 5629 2.432146 CGATCCATCTCCTTCAGTTCCA 59.568 50.000 0.00 0.00 0.00 3.53
877 5673 2.223852 GCTAGTTGTAGGCTGTAGCTCC 60.224 54.545 0.00 0.00 41.70 4.70
879 5675 1.196012 GTTGTAGGCTGTAGCTCCCT 58.804 55.000 0.00 0.00 41.70 4.20
882 5678 3.330126 TGTAGGCTGTAGCTCCCTATT 57.670 47.619 0.00 0.00 41.70 1.73
884 5680 2.182516 AGGCTGTAGCTCCCTATTGT 57.817 50.000 3.63 0.00 41.70 2.71
918 5714 0.530744 CCGGCTACAGCAGTGTCTTA 59.469 55.000 3.24 0.00 44.36 2.10
937 5733 4.473559 TCTTATTTACCCTCCTGTTCCTGG 59.526 45.833 0.00 0.00 0.00 4.45
984 5782 1.784525 GAGTAGAGCACACCACACAC 58.215 55.000 0.00 0.00 0.00 3.82
1071 5869 2.685380 CCCACGGAGGAGGAGCTT 60.685 66.667 0.00 0.00 41.22 3.74
1182 5980 3.274288 GGACATCCAAGGTGAGTTCATC 58.726 50.000 0.00 0.00 35.64 2.92
1238 6099 0.610232 GCCCATGGTGAGCTCAACTT 60.610 55.000 30.87 22.77 33.92 2.66
1413 6278 1.689233 AAGGCCATCTACTCCGCCA 60.689 57.895 5.01 0.00 44.18 5.69
1652 6749 3.194968 ACCACACTGTACCATACTGTAGC 59.805 47.826 0.00 0.00 38.55 3.58
1704 6809 4.176752 GGCGACAGGGATGGGGAC 62.177 72.222 0.00 0.00 0.00 4.46
1705 6810 4.530857 GCGACAGGGATGGGGACG 62.531 72.222 0.00 0.00 0.00 4.79
1752 6877 2.398451 GCGATTAATGTACGTACGTCGG 59.602 50.000 26.53 9.38 44.69 4.79
1753 6878 2.966708 CGATTAATGTACGTACGTCGGG 59.033 50.000 26.53 5.65 44.69 5.14
1800 6936 3.064931 TCGATATGCGACTGTAGACGAT 58.935 45.455 7.86 2.18 45.59 3.73
1801 6937 3.120649 TCGATATGCGACTGTAGACGATG 60.121 47.826 7.86 0.00 45.59 3.84
1802 6938 3.493272 GATATGCGACTGTAGACGATGG 58.507 50.000 7.86 0.00 35.37 3.51
1803 6939 0.385751 ATGCGACTGTAGACGATGGG 59.614 55.000 7.86 0.00 35.37 4.00
1924 7069 0.735471 GCTGGGATTTCCTTTCGAGC 59.265 55.000 0.00 0.00 36.20 5.03
1957 7108 4.954970 AAGCGGCAGTGGGTGGTG 62.955 66.667 1.45 0.00 0.00 4.17
2070 8720 1.475045 CACAGCGATCTGATCACTCG 58.525 55.000 17.19 15.37 42.95 4.18
2073 8723 0.665835 AGCGATCTGATCACTCGTCC 59.334 55.000 17.19 8.00 34.96 4.79
2074 8724 0.658829 GCGATCTGATCACTCGTCCG 60.659 60.000 17.19 2.99 34.96 4.79
2075 8725 0.658368 CGATCTGATCACTCGTCCGT 59.342 55.000 17.19 0.00 0.00 4.69
2076 8726 1.595732 CGATCTGATCACTCGTCCGTG 60.596 57.143 17.19 0.00 36.25 4.94
2077 8727 1.671328 GATCTGATCACTCGTCCGTGA 59.329 52.381 12.66 7.24 46.82 4.35
2160 8810 3.759544 CCATGCCATGGCTAGCTG 58.240 61.111 35.53 24.87 44.70 4.24
2161 8811 2.561956 CCATGCCATGGCTAGCTGC 61.562 63.158 35.53 9.60 44.70 5.25
2171 8821 4.451150 CTAGCTGCCGCACGGGAA 62.451 66.667 11.65 0.00 38.47 3.97
2172 8822 3.950794 CTAGCTGCCGCACGGGAAA 62.951 63.158 11.65 0.00 38.47 3.13
2214 8864 2.660552 GTCGTCCCACACCACACG 60.661 66.667 0.00 0.00 0.00 4.49
2231 8885 2.022129 CGCGCGTGTTTCTTCTCCT 61.022 57.895 24.19 0.00 0.00 3.69
2252 8906 2.291043 CCTAACCCCAGACACGCCT 61.291 63.158 0.00 0.00 0.00 5.52
2356 9010 0.179094 ACAAGCAGACGGACAAACGA 60.179 50.000 0.00 0.00 37.61 3.85
2409 9568 0.390340 AGCACTGCTACACATGGACG 60.390 55.000 0.21 0.00 36.99 4.79
2422 9581 1.066215 CATGGACGTCAGGACATGGAA 60.066 52.381 18.91 0.00 37.61 3.53
2423 9582 0.320374 TGGACGTCAGGACATGGAAC 59.680 55.000 18.91 0.00 0.00 3.62
2425 9584 0.736325 GACGTCAGGACATGGAACGG 60.736 60.000 11.55 0.00 34.39 4.44
2426 9585 1.183030 ACGTCAGGACATGGAACGGA 61.183 55.000 6.34 0.00 34.39 4.69
2427 9586 0.175760 CGTCAGGACATGGAACGGAT 59.824 55.000 0.00 0.00 0.00 4.18
2429 9588 0.541392 TCAGGACATGGAACGGATGG 59.459 55.000 0.00 0.00 0.00 3.51
2430 9589 0.464373 CAGGACATGGAACGGATGGG 60.464 60.000 0.00 0.00 0.00 4.00
2431 9590 0.914417 AGGACATGGAACGGATGGGT 60.914 55.000 0.00 0.00 0.00 4.51
2432 9591 0.748005 GGACATGGAACGGATGGGTG 60.748 60.000 0.00 0.00 0.00 4.61
2433 9592 0.748005 GACATGGAACGGATGGGTGG 60.748 60.000 0.00 0.00 0.00 4.61
2434 9593 1.204786 ACATGGAACGGATGGGTGGA 61.205 55.000 0.00 0.00 0.00 4.02
2436 9595 2.124695 GGAACGGATGGGTGGAGC 60.125 66.667 0.00 0.00 0.00 4.70
2437 9596 2.668632 GAACGGATGGGTGGAGCA 59.331 61.111 0.00 0.00 0.00 4.26
2438 9597 1.224592 GAACGGATGGGTGGAGCAT 59.775 57.895 0.00 0.00 0.00 3.79
2439 9598 0.468226 GAACGGATGGGTGGAGCATA 59.532 55.000 0.00 0.00 0.00 3.14
2440 9599 1.072331 GAACGGATGGGTGGAGCATAT 59.928 52.381 0.00 0.00 0.00 1.78
2441 9600 2.024176 ACGGATGGGTGGAGCATATA 57.976 50.000 0.00 0.00 0.00 0.86
2474 9653 3.285484 AGATATGTGCCTTTTGAGCTGG 58.715 45.455 0.00 0.00 0.00 4.85
2475 9654 2.877097 TATGTGCCTTTTGAGCTGGA 57.123 45.000 0.00 0.00 0.00 3.86
2476 9655 2.226962 ATGTGCCTTTTGAGCTGGAT 57.773 45.000 0.00 0.00 0.00 3.41
2477 9656 1.250328 TGTGCCTTTTGAGCTGGATG 58.750 50.000 0.00 0.00 0.00 3.51
2478 9657 0.529378 GTGCCTTTTGAGCTGGATGG 59.471 55.000 0.00 0.00 0.00 3.51
2479 9658 0.405198 TGCCTTTTGAGCTGGATGGA 59.595 50.000 0.00 0.00 0.00 3.41
2480 9659 1.006281 TGCCTTTTGAGCTGGATGGAT 59.994 47.619 0.00 0.00 0.00 3.41
2558 9748 2.009051 CGCAGGCACATAATTGAGTGA 58.991 47.619 14.11 0.00 37.97 3.41
2559 9749 2.223112 CGCAGGCACATAATTGAGTGAC 60.223 50.000 14.11 11.77 44.14 3.67
2570 9760 4.899352 AATTGAGTGACTGGCTAGTTCT 57.101 40.909 3.47 6.38 37.25 3.01
2574 9764 1.974236 AGTGACTGGCTAGTTCTTGCT 59.026 47.619 3.47 0.00 37.25 3.91
2633 9831 4.893424 TTTCTTCCTTGTGTTCTTTCCG 57.107 40.909 0.00 0.00 0.00 4.30
2675 9884 8.211629 ACTAGCTTCTTCTTTTCTTTTGTAGGA 58.788 33.333 0.00 0.00 0.00 2.94
2676 9885 7.503521 AGCTTCTTCTTTTCTTTTGTAGGAG 57.496 36.000 0.00 0.00 0.00 3.69
2679 9888 8.283992 GCTTCTTCTTTTCTTTTGTAGGAGTAC 58.716 37.037 0.00 0.00 0.00 2.73
2694 9903 3.946558 AGGAGTACTACTTAGCTGGTTCG 59.053 47.826 0.17 0.00 0.00 3.95
2710 9919 1.274167 GTTCGTGGATGTGTAGGGTGA 59.726 52.381 0.00 0.00 0.00 4.02
2712 9921 3.021177 TCGTGGATGTGTAGGGTGATA 57.979 47.619 0.00 0.00 0.00 2.15
2728 9937 3.003068 GGTGATATGTCATGCTTGCAGAC 59.997 47.826 13.97 13.97 36.60 3.51
2744 9953 4.843728 TGCAGACGGGAATTAATCTCTTT 58.156 39.130 0.00 0.00 0.00 2.52
2748 9957 6.512415 GCAGACGGGAATTAATCTCTTTCATG 60.512 42.308 0.00 0.00 0.00 3.07
2764 9973 6.351711 TCTTTCATGTGATCTCCGATCAATT 58.648 36.000 8.01 0.00 0.00 2.32
2795 10004 1.632409 CATGGGCATGGCTACCTCTAT 59.368 52.381 19.78 0.00 35.24 1.98
2829 10038 1.741706 CTCAGCAAATGGAACTGCGAT 59.258 47.619 0.00 0.00 43.51 4.58
2837 10046 5.226396 CAAATGGAACTGCGATGGTAAAAA 58.774 37.500 0.00 0.00 0.00 1.94
2838 10047 3.907894 TGGAACTGCGATGGTAAAAAC 57.092 42.857 0.00 0.00 0.00 2.43
2840 10067 3.886505 TGGAACTGCGATGGTAAAAACTT 59.113 39.130 0.00 0.00 0.00 2.66
2843 10070 4.237349 ACTGCGATGGTAAAAACTTTGG 57.763 40.909 0.00 0.00 0.00 3.28
2846 10073 5.299782 ACTGCGATGGTAAAAACTTTGGTTA 59.700 36.000 0.00 0.00 34.90 2.85
2847 10074 5.764131 TGCGATGGTAAAAACTTTGGTTAG 58.236 37.500 0.00 0.00 34.90 2.34
2852 10079 9.172820 CGATGGTAAAAACTTTGGTTAGTTAAC 57.827 33.333 0.00 0.00 37.37 2.01
2864 10091 2.934553 GTTAGTTAACTTGCCGGCCTAG 59.065 50.000 26.77 23.09 33.52 3.02
2890 10121 5.104259 ACTAGGTGCCCTTCTTCTTAATG 57.896 43.478 0.00 0.00 34.61 1.90
2927 10158 2.726989 CGATTGCATGAGCTTGACACAC 60.727 50.000 0.00 0.00 42.74 3.82
2929 10160 0.946528 TGCATGAGCTTGACACACAC 59.053 50.000 0.00 0.00 42.74 3.82
2930 10161 1.233019 GCATGAGCTTGACACACACT 58.767 50.000 0.00 0.00 37.91 3.55
2931 10162 2.224257 TGCATGAGCTTGACACACACTA 60.224 45.455 0.00 0.00 42.74 2.74
2932 10163 2.414481 GCATGAGCTTGACACACACTAG 59.586 50.000 0.00 0.00 37.91 2.57
2934 10165 3.650070 TGAGCTTGACACACACTAGAG 57.350 47.619 0.00 0.00 0.00 2.43
2935 10166 2.959030 TGAGCTTGACACACACTAGAGT 59.041 45.455 0.00 0.00 0.00 3.24
3015 10265 5.477984 AGCATTTCTCCAAGCACTTGATTAA 59.522 36.000 11.94 0.48 42.93 1.40
3016 10266 5.574443 GCATTTCTCCAAGCACTTGATTAAC 59.426 40.000 11.94 0.00 42.93 2.01
3020 10270 3.071479 TCCAAGCACTTGATTAACCGAC 58.929 45.455 11.94 0.00 42.93 4.79
3027 10277 4.927425 GCACTTGATTAACCGACTGACTTA 59.073 41.667 0.00 0.00 0.00 2.24
3057 10307 3.650688 GTACGAACGTACCGTCGC 58.349 61.111 21.76 9.66 43.60 5.19
3305 10641 0.405198 TGACCACCATCAGCAACCAT 59.595 50.000 0.00 0.00 0.00 3.55
3392 10740 1.208052 CTCGACCACATCCTCAACCAT 59.792 52.381 0.00 0.00 0.00 3.55
3407 10755 1.108727 ACCATTACATGCATGGCCGG 61.109 55.000 29.41 23.62 44.69 6.13
3833 11196 3.491639 TGACGACGATGAATTGAAAACGT 59.508 39.130 0.00 0.00 36.71 3.99
3834 11197 4.680567 TGACGACGATGAATTGAAAACGTA 59.319 37.500 0.00 0.00 34.26 3.57
3937 11300 2.539142 CGCACTAGTAGCACTAACTCGG 60.539 54.545 14.77 0.00 29.00 4.63
4091 11455 1.066573 AGCTGATCTTGACGTGAAGGG 60.067 52.381 14.92 4.62 0.00 3.95
4111 11475 9.618890 TGAAGGGTCAAATTATAGAATTGAGAG 57.381 33.333 0.00 0.00 35.38 3.20
4334 11709 1.873178 TAGGGTGGGCATGCCATTGT 61.873 55.000 36.56 19.22 37.98 2.71
4337 11712 1.433064 GTGGGCATGCCATTGTACG 59.567 57.895 36.56 0.00 37.98 3.67
4357 11732 0.458543 CGGATGGAGGTGTCGACAAG 60.459 60.000 21.95 0.00 0.00 3.16
4370 11745 7.671302 AGGTGTCGACAAGCTATGAATATATT 58.329 34.615 21.95 0.00 0.00 1.28
4376 11753 7.118245 TCGACAAGCTATGAATATATTGCAAGG 59.882 37.037 4.94 0.00 32.39 3.61
4448 11827 8.970691 ATTGCTAGTGTTGACAAATTAACATC 57.029 30.769 0.00 0.00 38.84 3.06
4452 11831 8.023128 GCTAGTGTTGACAAATTAACATCATGT 58.977 33.333 0.00 0.00 38.84 3.21
4467 11846 7.837202 AACATCATGTGCTCCAATAATTTTG 57.163 32.000 0.00 0.00 0.00 2.44
4468 11847 7.172868 ACATCATGTGCTCCAATAATTTTGA 57.827 32.000 0.00 0.00 0.00 2.69
4471 11850 5.127519 TCATGTGCTCCAATAATTTTGAGGG 59.872 40.000 0.00 0.00 0.00 4.30
4473 11852 4.220382 TGTGCTCCAATAATTTTGAGGGTG 59.780 41.667 0.00 0.00 0.00 4.61
4487 11866 2.059786 GGGTGTGCATCCCATTGGG 61.060 63.158 16.26 16.26 46.11 4.12
4488 11867 2.724273 GGTGTGCATCCCATTGGGC 61.724 63.158 17.60 6.16 43.94 5.36
4491 11870 2.755064 TGCATCCCATTGGGCACG 60.755 61.111 17.60 8.53 43.94 5.34
4513 11892 0.828022 TGGAGGTGTCGACAAACACT 59.172 50.000 21.95 15.71 46.96 3.55
4514 11893 2.033372 TGGAGGTGTCGACAAACACTA 58.967 47.619 21.95 10.13 46.96 2.74
4516 11895 2.993899 GGAGGTGTCGACAAACACTATG 59.006 50.000 21.95 0.00 46.96 2.23
4517 11896 3.305813 GGAGGTGTCGACAAACACTATGA 60.306 47.826 21.95 0.00 46.96 2.15
4521 11900 4.929808 GGTGTCGACAAACACTATGAGAAT 59.070 41.667 21.95 0.00 46.96 2.40
4524 11903 7.027760 GTGTCGACAAACACTATGAGAATAGA 58.972 38.462 21.95 0.00 44.90 1.98
4525 11904 7.702772 GTGTCGACAAACACTATGAGAATAGAT 59.297 37.037 21.95 0.00 44.90 1.98
4526 11905 8.251026 TGTCGACAAACACTATGAGAATAGATT 58.749 33.333 17.62 0.00 0.00 2.40
4529 11908 9.516314 CGACAAACACTATGAGAATAGATTGTA 57.484 33.333 12.03 0.00 33.65 2.41
4543 11922 9.715121 AGAATAGATTGTAAGTTTTAACCGTGA 57.285 29.630 0.00 0.00 0.00 4.35
4581 11960 9.407380 ACCATGAAAATCTAATAACTATGTGCA 57.593 29.630 0.00 0.00 0.00 4.57
4602 11981 3.503827 TTAGTGCGATCGATTGACAGT 57.496 42.857 21.57 16.77 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.707849 TACTTCCCGACTGCTCCGC 61.708 63.158 0.00 0.00 0.00 5.54
1 2 1.139095 GTACTTCCCGACTGCTCCG 59.861 63.158 0.00 0.00 0.00 4.63
2 3 0.173708 CAGTACTTCCCGACTGCTCC 59.826 60.000 0.00 0.00 36.91 4.70
8 9 1.884579 TCACTGACAGTACTTCCCGAC 59.115 52.381 8.02 0.00 0.00 4.79
9 10 2.281539 TCACTGACAGTACTTCCCGA 57.718 50.000 8.02 0.00 0.00 5.14
10 11 2.492088 TGATCACTGACAGTACTTCCCG 59.508 50.000 8.02 0.00 0.00 5.14
11 12 4.537135 TTGATCACTGACAGTACTTCCC 57.463 45.455 8.02 0.00 0.00 3.97
12 13 4.932200 CCTTTGATCACTGACAGTACTTCC 59.068 45.833 8.02 0.00 0.00 3.46
14 15 4.040952 AGCCTTTGATCACTGACAGTACTT 59.959 41.667 8.02 0.00 0.00 2.24
15 16 3.580458 AGCCTTTGATCACTGACAGTACT 59.420 43.478 8.02 0.00 0.00 2.73
16 17 3.681897 CAGCCTTTGATCACTGACAGTAC 59.318 47.826 8.02 3.92 31.67 2.73
17 18 3.578282 TCAGCCTTTGATCACTGACAGTA 59.422 43.478 8.02 0.00 34.35 2.74
18 19 2.369860 TCAGCCTTTGATCACTGACAGT 59.630 45.455 1.07 1.07 34.35 3.55
19 20 3.049708 TCAGCCTTTGATCACTGACAG 57.950 47.619 9.13 0.00 34.35 3.51
20 21 3.490439 TTCAGCCTTTGATCACTGACA 57.510 42.857 12.03 3.64 38.81 3.58
22 23 4.356405 TCTTTCAGCCTTTGATCACTGA 57.644 40.909 9.13 9.13 37.38 3.41
23 24 4.612259 CGTTCTTTCAGCCTTTGATCACTG 60.612 45.833 0.00 0.00 35.27 3.66
24 25 3.499918 CGTTCTTTCAGCCTTTGATCACT 59.500 43.478 0.00 0.00 35.27 3.41
25 26 3.498397 TCGTTCTTTCAGCCTTTGATCAC 59.502 43.478 0.00 0.00 35.27 3.06
26 27 3.498397 GTCGTTCTTTCAGCCTTTGATCA 59.502 43.478 0.00 0.00 35.27 2.92
28 29 2.480419 CGTCGTTCTTTCAGCCTTTGAT 59.520 45.455 0.00 0.00 35.27 2.57
30 31 1.864711 TCGTCGTTCTTTCAGCCTTTG 59.135 47.619 0.00 0.00 0.00 2.77
31 32 2.135933 CTCGTCGTTCTTTCAGCCTTT 58.864 47.619 0.00 0.00 0.00 3.11
32 33 1.784525 CTCGTCGTTCTTTCAGCCTT 58.215 50.000 0.00 0.00 0.00 4.35
33 34 0.667792 GCTCGTCGTTCTTTCAGCCT 60.668 55.000 0.00 0.00 0.00 4.58
34 35 0.667792 AGCTCGTCGTTCTTTCAGCC 60.668 55.000 0.00 0.00 0.00 4.85
35 36 0.436531 CAGCTCGTCGTTCTTTCAGC 59.563 55.000 0.00 0.00 0.00 4.26
36 37 1.063806 CCAGCTCGTCGTTCTTTCAG 58.936 55.000 0.00 0.00 0.00 3.02
37 38 0.319555 CCCAGCTCGTCGTTCTTTCA 60.320 55.000 0.00 0.00 0.00 2.69
38 39 0.038526 TCCCAGCTCGTCGTTCTTTC 60.039 55.000 0.00 0.00 0.00 2.62
39 40 0.391597 TTCCCAGCTCGTCGTTCTTT 59.608 50.000 0.00 0.00 0.00 2.52
40 41 0.391597 TTTCCCAGCTCGTCGTTCTT 59.608 50.000 0.00 0.00 0.00 2.52
41 42 0.319641 GTTTCCCAGCTCGTCGTTCT 60.320 55.000 0.00 0.00 0.00 3.01
43 44 0.179067 TTGTTTCCCAGCTCGTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
44 45 0.179067 TTTGTTTCCCAGCTCGTCGT 60.179 50.000 0.00 0.00 0.00 4.34
46 47 2.922335 GCAATTTGTTTCCCAGCTCGTC 60.922 50.000 0.00 0.00 0.00 4.20
47 48 1.000274 GCAATTTGTTTCCCAGCTCGT 60.000 47.619 0.00 0.00 0.00 4.18
48 49 1.669795 GGCAATTTGTTTCCCAGCTCG 60.670 52.381 0.00 0.00 0.00 5.03
49 50 1.338105 GGGCAATTTGTTTCCCAGCTC 60.338 52.381 5.87 0.00 38.62 4.09
50 51 0.686789 GGGCAATTTGTTTCCCAGCT 59.313 50.000 5.87 0.00 38.62 4.24
51 52 0.396060 TGGGCAATTTGTTTCCCAGC 59.604 50.000 8.67 0.00 43.40 4.85
53 54 0.396060 GCTGGGCAATTTGTTTCCCA 59.604 50.000 11.40 11.40 45.87 4.37
54 55 0.686789 AGCTGGGCAATTTGTTTCCC 59.313 50.000 4.16 4.16 39.22 3.97
55 56 1.669795 CGAGCTGGGCAATTTGTTTCC 60.670 52.381 0.00 0.00 0.00 3.13
56 57 1.669795 CCGAGCTGGGCAATTTGTTTC 60.670 52.381 0.21 0.00 0.00 2.78
57 58 0.318120 CCGAGCTGGGCAATTTGTTT 59.682 50.000 0.21 0.00 0.00 2.83
59 60 3.685435 CCGAGCTGGGCAATTTGT 58.315 55.556 0.21 0.00 0.00 2.83
67 68 3.121030 CTTGTTCGCCGAGCTGGG 61.121 66.667 10.99 10.99 38.63 4.45
68 69 3.793144 GCTTGTTCGCCGAGCTGG 61.793 66.667 1.95 0.00 45.75 4.85
69 70 4.139420 CGCTTGTTCGCCGAGCTG 62.139 66.667 1.95 0.00 46.85 4.24
70 71 3.858868 TTCGCTTGTTCGCCGAGCT 62.859 57.895 1.95 0.00 46.85 4.09
71 72 3.354499 CTTCGCTTGTTCGCCGAGC 62.354 63.158 0.00 0.00 45.76 5.03
72 73 2.772189 CTTCGCTTGTTCGCCGAG 59.228 61.111 0.00 0.00 32.14 4.63
73 74 3.411351 GCTTCGCTTGTTCGCCGA 61.411 61.111 0.00 0.00 0.00 5.54
74 75 2.513065 ATTGCTTCGCTTGTTCGCCG 62.513 55.000 0.00 0.00 0.00 6.46
75 76 0.794605 GATTGCTTCGCTTGTTCGCC 60.795 55.000 0.00 0.00 0.00 5.54
76 77 1.122419 CGATTGCTTCGCTTGTTCGC 61.122 55.000 0.00 0.00 41.69 4.70
100 101 3.391665 CTAGGCACCTTGAGCGGGG 62.392 68.421 0.00 0.00 0.00 5.73
104 105 1.811679 GTCGCTAGGCACCTTGAGC 60.812 63.158 2.10 2.00 0.00 4.26
105 106 0.037326 TTGTCGCTAGGCACCTTGAG 60.037 55.000 2.10 0.00 0.00 3.02
106 107 0.320421 GTTGTCGCTAGGCACCTTGA 60.320 55.000 2.10 0.00 0.00 3.02
107 108 1.626654 CGTTGTCGCTAGGCACCTTG 61.627 60.000 0.00 0.00 0.00 3.61
108 109 1.374252 CGTTGTCGCTAGGCACCTT 60.374 57.895 0.00 0.00 0.00 3.50
109 110 2.261671 CGTTGTCGCTAGGCACCT 59.738 61.111 0.00 0.00 0.00 4.00
111 112 3.460144 GACGTTGTCGCTAGGCAC 58.540 61.111 0.00 0.00 41.18 5.01
120 121 4.385244 AGTCAAAATTAGCGACGTTGTC 57.615 40.909 4.37 0.00 34.80 3.18
121 122 4.746115 TGTAGTCAAAATTAGCGACGTTGT 59.254 37.500 4.37 0.00 34.80 3.32
122 123 5.258685 TGTAGTCAAAATTAGCGACGTTG 57.741 39.130 0.00 0.00 34.80 4.10
123 124 5.910637 TTGTAGTCAAAATTAGCGACGTT 57.089 34.783 0.00 0.00 34.80 3.99
124 125 5.910637 TTTGTAGTCAAAATTAGCGACGT 57.089 34.783 0.00 0.00 40.08 4.34
125 126 6.530567 TGATTTGTAGTCAAAATTAGCGACG 58.469 36.000 0.00 0.00 44.97 5.12
126 127 9.422196 GTATGATTTGTAGTCAAAATTAGCGAC 57.578 33.333 0.00 0.00 44.97 5.19
127 128 8.609176 GGTATGATTTGTAGTCAAAATTAGCGA 58.391 33.333 0.00 0.00 44.97 4.93
128 129 7.855904 GGGTATGATTTGTAGTCAAAATTAGCG 59.144 37.037 0.00 0.00 44.97 4.26
129 130 8.903820 AGGGTATGATTTGTAGTCAAAATTAGC 58.096 33.333 0.00 1.51 44.97 3.09
133 134 9.838339 CTAGAGGGTATGATTTGTAGTCAAAAT 57.162 33.333 0.00 0.00 44.97 1.82
134 135 8.822805 ACTAGAGGGTATGATTTGTAGTCAAAA 58.177 33.333 0.00 0.00 44.97 2.44
135 136 8.375493 ACTAGAGGGTATGATTTGTAGTCAAA 57.625 34.615 0.00 0.00 45.71 2.69
136 137 7.618117 TGACTAGAGGGTATGATTTGTAGTCAA 59.382 37.037 0.00 0.00 41.17 3.18
138 139 7.285858 AGTGACTAGAGGGTATGATTTGTAGTC 59.714 40.741 0.00 0.00 36.99 2.59
139 140 7.126733 AGTGACTAGAGGGTATGATTTGTAGT 58.873 38.462 0.00 0.00 0.00 2.73
140 141 7.589958 AGTGACTAGAGGGTATGATTTGTAG 57.410 40.000 0.00 0.00 0.00 2.74
141 142 7.973048 AAGTGACTAGAGGGTATGATTTGTA 57.027 36.000 0.00 0.00 0.00 2.41
142 143 6.875972 AAGTGACTAGAGGGTATGATTTGT 57.124 37.500 0.00 0.00 0.00 2.83
143 144 6.037610 GCAAAGTGACTAGAGGGTATGATTTG 59.962 42.308 0.00 0.00 0.00 2.32
144 145 6.069963 AGCAAAGTGACTAGAGGGTATGATTT 60.070 38.462 0.00 0.00 0.00 2.17
147 148 4.160439 CAGCAAAGTGACTAGAGGGTATGA 59.840 45.833 0.00 0.00 0.00 2.15
148 149 4.081420 ACAGCAAAGTGACTAGAGGGTATG 60.081 45.833 0.00 0.00 0.00 2.39
150 151 3.258372 CACAGCAAAGTGACTAGAGGGTA 59.742 47.826 0.00 0.00 42.05 3.69
151 152 2.037772 CACAGCAAAGTGACTAGAGGGT 59.962 50.000 0.00 0.00 42.05 4.34
152 153 2.613977 CCACAGCAAAGTGACTAGAGGG 60.614 54.545 0.00 0.00 42.05 4.30
154 155 2.613977 CCCCACAGCAAAGTGACTAGAG 60.614 54.545 0.00 0.00 42.05 2.43
155 156 1.347707 CCCCACAGCAAAGTGACTAGA 59.652 52.381 0.00 0.00 42.05 2.43
156 157 1.813513 CCCCACAGCAAAGTGACTAG 58.186 55.000 5.65 0.00 42.05 2.57
157 158 0.250727 GCCCCACAGCAAAGTGACTA 60.251 55.000 5.65 0.00 42.05 2.59
158 159 1.529244 GCCCCACAGCAAAGTGACT 60.529 57.895 5.65 0.00 42.05 3.41
159 160 2.564721 GGCCCCACAGCAAAGTGAC 61.565 63.158 0.00 0.00 42.05 3.67
161 162 2.203538 AGGCCCCACAGCAAAGTG 60.204 61.111 0.00 0.00 39.21 3.16
162 163 2.116125 GAGGCCCCACAGCAAAGT 59.884 61.111 0.00 0.00 0.00 2.66
163 164 2.677875 GGAGGCCCCACAGCAAAG 60.678 66.667 0.00 0.00 34.14 2.77
164 165 3.185203 AGGAGGCCCCACAGCAAA 61.185 61.111 12.24 0.00 37.41 3.68
165 166 3.650950 GAGGAGGCCCCACAGCAA 61.651 66.667 12.24 0.00 37.41 3.91
169 170 4.392166 TAGCGAGGAGGCCCCACA 62.392 66.667 12.24 0.00 37.41 4.17
170 171 3.541713 CTAGCGAGGAGGCCCCAC 61.542 72.222 12.24 5.49 37.41 4.61
174 175 3.145422 GACAGCTAGCGAGGAGGCC 62.145 68.421 9.55 0.00 0.00 5.19
175 176 2.415426 GACAGCTAGCGAGGAGGC 59.585 66.667 9.55 0.00 0.00 4.70
176 177 2.494530 GGGACAGCTAGCGAGGAGG 61.495 68.421 9.55 0.00 0.00 4.30
177 178 1.754621 TGGGACAGCTAGCGAGGAG 60.755 63.158 9.55 0.94 0.00 3.69
179 180 2.496817 GTGGGACAGCTAGCGAGG 59.503 66.667 9.55 5.80 41.80 4.63
180 181 2.103143 CGTGGGACAGCTAGCGAG 59.897 66.667 9.55 8.90 41.80 5.03
181 182 4.129737 GCGTGGGACAGCTAGCGA 62.130 66.667 9.55 0.00 41.80 4.93
183 184 4.436998 ACGCGTGGGACAGCTAGC 62.437 66.667 12.93 6.62 41.80 3.42
185 186 2.986979 TGACGCGTGGGACAGCTA 60.987 61.111 20.70 0.00 41.80 3.32
186 187 4.664677 GTGACGCGTGGGACAGCT 62.665 66.667 20.70 0.00 41.80 4.24
187 188 4.961511 TGTGACGCGTGGGACAGC 62.962 66.667 20.70 0.00 41.80 4.40
189 190 3.207547 CTCTGTGACGCGTGGGACA 62.208 63.158 20.70 15.70 0.00 4.02
190 191 2.430921 CTCTGTGACGCGTGGGAC 60.431 66.667 20.70 11.34 0.00 4.46
192 193 2.126307 CTCTCTGTGACGCGTGGG 60.126 66.667 20.70 0.79 0.00 4.61
193 194 0.109086 ATTCTCTCTGTGACGCGTGG 60.109 55.000 20.70 3.90 0.00 4.94
194 195 0.987715 CATTCTCTCTGTGACGCGTG 59.012 55.000 20.70 0.93 0.00 5.34
195 196 0.598562 ACATTCTCTCTGTGACGCGT 59.401 50.000 13.85 13.85 0.00 6.01
197 198 6.209361 TCATATTACATTCTCTCTGTGACGC 58.791 40.000 0.00 0.00 0.00 5.19
198 199 7.864882 ACATCATATTACATTCTCTCTGTGACG 59.135 37.037 0.00 0.00 0.00 4.35
208 209 9.631452 CGACTCATGTACATCATATTACATTCT 57.369 33.333 5.07 0.00 36.90 2.40
209 210 9.411801 ACGACTCATGTACATCATATTACATTC 57.588 33.333 5.07 0.00 36.90 2.67
212 213 8.842280 TGTACGACTCATGTACATCATATTACA 58.158 33.333 5.07 6.95 45.24 2.41
224 225 6.144078 ACTATGCATTGTACGACTCATGTA 57.856 37.500 12.24 0.00 0.00 2.29
228 229 5.570234 TGTACTATGCATTGTACGACTCA 57.430 39.130 31.91 19.49 40.33 3.41
229 230 6.257169 GTTGTACTATGCATTGTACGACTC 57.743 41.667 37.74 25.54 43.64 3.36
231 232 5.575606 ACAGTTGTACTATGCATTGTACGAC 59.424 40.000 38.00 38.00 45.47 4.34
232 233 5.716094 ACAGTTGTACTATGCATTGTACGA 58.284 37.500 31.91 29.70 40.33 3.43
238 239 9.976511 ACGTATTATACAGTTGTACTATGCATT 57.023 29.630 3.54 0.00 32.72 3.56
244 245 9.791801 TGGGATACGTATTATACAGTTGTACTA 57.208 33.333 9.92 0.00 32.26 1.82
245 246 8.696043 TGGGATACGTATTATACAGTTGTACT 57.304 34.615 9.92 0.00 32.26 2.73
246 247 9.350357 CATGGGATACGTATTATACAGTTGTAC 57.650 37.037 9.92 0.00 32.26 2.90
247 248 9.081204 ACATGGGATACGTATTATACAGTTGTA 57.919 33.333 9.92 0.00 37.60 2.41
248 249 7.870954 CACATGGGATACGTATTATACAGTTGT 59.129 37.037 9.92 6.40 37.60 3.32
249 250 7.870954 ACACATGGGATACGTATTATACAGTTG 59.129 37.037 9.92 9.55 37.60 3.16
250 251 7.959175 ACACATGGGATACGTATTATACAGTT 58.041 34.615 9.92 0.00 37.60 3.16
251 252 7.534723 ACACATGGGATACGTATTATACAGT 57.465 36.000 9.92 2.51 37.60 3.55
252 253 8.517056 TGTACACATGGGATACGTATTATACAG 58.483 37.037 9.92 1.90 37.60 2.74
253 254 8.298854 GTGTACACATGGGATACGTATTATACA 58.701 37.037 21.14 7.14 37.60 2.29
254 255 7.756722 GGTGTACACATGGGATACGTATTATAC 59.243 40.741 26.51 4.12 37.60 1.47
255 256 7.670979 AGGTGTACACATGGGATACGTATTATA 59.329 37.037 26.51 0.00 37.60 0.98
257 258 5.834742 AGGTGTACACATGGGATACGTATTA 59.165 40.000 26.51 0.16 37.60 0.98
258 259 4.652421 AGGTGTACACATGGGATACGTATT 59.348 41.667 26.51 0.00 37.60 1.89
260 261 3.633525 GAGGTGTACACATGGGATACGTA 59.366 47.826 26.51 0.00 37.60 3.57
261 262 2.429610 GAGGTGTACACATGGGATACGT 59.570 50.000 26.51 0.00 37.60 3.57
263 264 2.769663 TGGAGGTGTACACATGGGATAC 59.230 50.000 26.51 7.24 0.00 2.24
264 265 2.769663 GTGGAGGTGTACACATGGGATA 59.230 50.000 26.51 4.15 37.54 2.59
265 266 1.559682 GTGGAGGTGTACACATGGGAT 59.440 52.381 26.51 5.66 37.54 3.85
266 267 0.981183 GTGGAGGTGTACACATGGGA 59.019 55.000 26.51 3.70 37.54 4.37
267 268 0.690192 TGTGGAGGTGTACACATGGG 59.310 55.000 26.51 0.00 42.20 4.00
288 289 4.807631 TGCCTGCATGCTCGCCAT 62.808 61.111 20.33 0.00 33.39 4.40
310 311 0.529992 CCAGCGATCCCGGTTTCTAC 60.530 60.000 0.00 0.00 44.97 2.59
311 312 0.685131 TCCAGCGATCCCGGTTTCTA 60.685 55.000 0.00 0.00 44.97 2.10
312 313 1.550130 TTCCAGCGATCCCGGTTTCT 61.550 55.000 0.00 0.00 44.97 2.52
315 316 0.250989 TTTTTCCAGCGATCCCGGTT 60.251 50.000 0.00 0.00 44.97 4.44
317 318 4.312052 TTTTTCCAGCGATCCCGG 57.688 55.556 0.00 0.00 36.06 5.73
331 332 2.490115 TCTGCGTCACAAAGTGGTTTTT 59.510 40.909 0.00 0.00 33.87 1.94
334 335 1.299541 CTCTGCGTCACAAAGTGGTT 58.700 50.000 0.00 0.00 33.87 3.67
335 336 0.532862 CCTCTGCGTCACAAAGTGGT 60.533 55.000 0.00 0.00 33.87 4.16
336 337 1.230635 CCCTCTGCGTCACAAAGTGG 61.231 60.000 0.00 0.00 33.87 4.00
338 339 1.071471 CCCCTCTGCGTCACAAAGT 59.929 57.895 0.00 0.00 0.00 2.66
339 340 0.036010 ATCCCCTCTGCGTCACAAAG 60.036 55.000 0.00 0.00 0.00 2.77
340 341 0.036388 GATCCCCTCTGCGTCACAAA 60.036 55.000 0.00 0.00 0.00 2.83
342 343 1.607801 CTGATCCCCTCTGCGTCACA 61.608 60.000 0.00 0.00 0.00 3.58
656 5434 3.150949 TGGAGCTCCACACACAGG 58.849 61.111 32.00 0.00 42.01 4.00
685 5465 0.755698 ATAGCCACTGACCGGTCGAT 60.756 55.000 28.70 16.95 0.00 3.59
686 5466 0.107066 TATAGCCACTGACCGGTCGA 60.107 55.000 28.70 16.89 0.00 4.20
689 5469 4.465305 GGTTATATATAGCCACTGACCGGT 59.535 45.833 18.07 6.92 34.22 5.28
830 5624 4.917415 CCATTGATGAAACGAAACTGGAAC 59.083 41.667 0.00 0.00 0.00 3.62
835 5629 3.305335 GCCACCATTGATGAAACGAAACT 60.305 43.478 0.00 0.00 0.00 2.66
877 5673 2.756760 AGTGCAATGCTCCAACAATAGG 59.243 45.455 6.82 0.00 0.00 2.57
918 5714 2.576648 GACCAGGAACAGGAGGGTAAAT 59.423 50.000 0.00 0.00 37.04 1.40
960 5756 1.248785 TGGTGTGCTCTACTCGGTCC 61.249 60.000 0.00 0.00 0.00 4.46
984 5782 1.945394 CTCATGATCCCTTCCTTTGCG 59.055 52.381 0.00 0.00 0.00 4.85
1071 5869 0.622136 TGGCGAGGTAGTAGGTGAGA 59.378 55.000 0.00 0.00 0.00 3.27
1238 6099 0.885196 GCGTTTTTCCATGGCCAGTA 59.115 50.000 13.05 0.00 0.00 2.74
1610 6525 3.695556 GGTCTGTACTTGGGAGAGAGTAC 59.304 52.174 6.69 6.69 45.28 2.73
1611 6526 3.332783 TGGTCTGTACTTGGGAGAGAGTA 59.667 47.826 0.00 0.00 0.00 2.59
1612 6527 2.110188 TGGTCTGTACTTGGGAGAGAGT 59.890 50.000 0.00 0.00 0.00 3.24
1613 6528 2.494073 GTGGTCTGTACTTGGGAGAGAG 59.506 54.545 0.00 0.00 0.00 3.20
1614 6529 2.158370 TGTGGTCTGTACTTGGGAGAGA 60.158 50.000 0.00 0.00 0.00 3.10
1615 6530 2.028930 GTGTGGTCTGTACTTGGGAGAG 60.029 54.545 0.00 0.00 0.00 3.20
1652 6749 1.725625 GTGCATGCGGTTCAACGTG 60.726 57.895 14.09 0.00 35.98 4.49
1771 6899 3.800628 TCGCATATCGATCAGCCAG 57.199 52.632 0.00 0.00 43.16 4.85
1779 6907 2.476821 TCGTCTACAGTCGCATATCGA 58.523 47.619 0.00 0.00 46.29 3.59
1800 6936 2.836154 GTCACCAGACCTTGCCCA 59.164 61.111 0.00 0.00 38.89 5.36
1801 6937 2.185310 ATCGTCACCAGACCTTGCCC 62.185 60.000 0.00 0.00 41.87 5.36
1802 6938 0.321653 AATCGTCACCAGACCTTGCC 60.322 55.000 0.00 0.00 41.87 4.52
1803 6939 2.380084 TAATCGTCACCAGACCTTGC 57.620 50.000 0.00 0.00 41.87 4.01
1943 7089 3.605749 CTACCACCACCCACTGCCG 62.606 68.421 0.00 0.00 0.00 5.69
1957 7108 0.601558 TCACGAGCACTGAACCTACC 59.398 55.000 0.00 0.00 0.00 3.18
2073 8723 1.070758 CCTAACCTCCCATCCATCACG 59.929 57.143 0.00 0.00 0.00 4.35
2074 8724 2.127708 ACCTAACCTCCCATCCATCAC 58.872 52.381 0.00 0.00 0.00 3.06
2075 8725 2.126882 CACCTAACCTCCCATCCATCA 58.873 52.381 0.00 0.00 0.00 3.07
2076 8726 1.202818 GCACCTAACCTCCCATCCATC 60.203 57.143 0.00 0.00 0.00 3.51
2077 8727 0.846693 GCACCTAACCTCCCATCCAT 59.153 55.000 0.00 0.00 0.00 3.41
2078 8728 1.622607 CGCACCTAACCTCCCATCCA 61.623 60.000 0.00 0.00 0.00 3.41
2079 8729 1.146263 CGCACCTAACCTCCCATCC 59.854 63.158 0.00 0.00 0.00 3.51
2080 8730 0.462047 CACGCACCTAACCTCCCATC 60.462 60.000 0.00 0.00 0.00 3.51
2081 8731 1.602237 CACGCACCTAACCTCCCAT 59.398 57.895 0.00 0.00 0.00 4.00
2082 8732 3.065306 CACGCACCTAACCTCCCA 58.935 61.111 0.00 0.00 0.00 4.37
2083 8733 2.436115 GCACGCACCTAACCTCCC 60.436 66.667 0.00 0.00 0.00 4.30
2084 8734 2.033194 GTGCACGCACCTAACCTCC 61.033 63.158 11.13 0.00 40.79 4.30
2085 8735 2.380410 CGTGCACGCACCTAACCTC 61.380 63.158 28.16 0.00 43.49 3.85
2086 8736 2.357034 CGTGCACGCACCTAACCT 60.357 61.111 28.16 0.00 43.49 3.50
2154 8804 3.950794 TTTCCCGTGCGGCAGCTAG 62.951 63.158 10.92 3.76 45.42 3.42
2155 8805 2.813226 ATTTTCCCGTGCGGCAGCTA 62.813 55.000 10.92 0.00 45.42 3.32
2156 8806 4.947147 TTTTCCCGTGCGGCAGCT 62.947 61.111 10.92 0.00 45.42 4.24
2158 8808 1.586154 AAGATTTTCCCGTGCGGCAG 61.586 55.000 1.18 0.00 0.00 4.85
2159 8809 1.602323 AAGATTTTCCCGTGCGGCA 60.602 52.632 0.00 0.00 0.00 5.69
2160 8810 1.154035 CAAGATTTTCCCGTGCGGC 60.154 57.895 4.91 0.00 0.00 6.53
2161 8811 1.241315 ACCAAGATTTTCCCGTGCGG 61.241 55.000 3.25 3.25 0.00 5.69
2162 8812 0.168128 GACCAAGATTTTCCCGTGCG 59.832 55.000 0.00 0.00 0.00 5.34
2163 8813 1.200020 CAGACCAAGATTTTCCCGTGC 59.800 52.381 0.00 0.00 0.00 5.34
2164 8814 1.200020 GCAGACCAAGATTTTCCCGTG 59.800 52.381 0.00 0.00 0.00 4.94
2165 8815 1.202879 TGCAGACCAAGATTTTCCCGT 60.203 47.619 0.00 0.00 0.00 5.28
2166 8816 1.200020 GTGCAGACCAAGATTTTCCCG 59.800 52.381 0.00 0.00 0.00 5.14
2167 8817 1.546029 GGTGCAGACCAAGATTTTCCC 59.454 52.381 0.00 0.00 42.59 3.97
2214 8864 0.944311 TCAGGAGAAGAAACACGCGC 60.944 55.000 5.73 0.00 0.00 6.86
2223 8877 1.435563 TGGGGTTAGGTCAGGAGAAGA 59.564 52.381 0.00 0.00 0.00 2.87
2231 8885 1.823169 GCGTGTCTGGGGTTAGGTCA 61.823 60.000 0.00 0.00 0.00 4.02
2356 9010 4.370917 TCCAAAAAGAAGCGTACTACGTT 58.629 39.130 10.23 1.15 44.73 3.99
2409 9568 1.656652 CATCCGTTCCATGTCCTGAC 58.343 55.000 0.00 0.00 0.00 3.51
2422 9581 1.902508 CTATATGCTCCACCCATCCGT 59.097 52.381 0.00 0.00 0.00 4.69
2423 9582 1.406069 GCTATATGCTCCACCCATCCG 60.406 57.143 0.00 0.00 38.95 4.18
2425 9584 3.276857 CATGCTATATGCTCCACCCATC 58.723 50.000 0.00 0.00 43.37 3.51
2426 9585 2.619849 GCATGCTATATGCTCCACCCAT 60.620 50.000 11.37 0.00 43.37 4.00
2427 9586 1.271543 GCATGCTATATGCTCCACCCA 60.272 52.381 11.37 0.00 43.37 4.51
2429 9588 2.189594 TGCATGCTATATGCTCCACC 57.810 50.000 20.33 0.00 44.79 4.61
2430 9589 3.119602 CCAATGCATGCTATATGCTCCAC 60.120 47.826 20.33 0.00 44.79 4.02
2431 9590 3.086282 CCAATGCATGCTATATGCTCCA 58.914 45.455 20.33 0.00 44.79 3.86
2432 9591 3.349927 TCCAATGCATGCTATATGCTCC 58.650 45.455 20.33 0.00 44.79 4.70
2433 9592 4.259356 TCTCCAATGCATGCTATATGCTC 58.741 43.478 20.33 0.00 44.79 4.26
2434 9593 4.296621 TCTCCAATGCATGCTATATGCT 57.703 40.909 20.33 0.00 44.79 3.79
2436 9595 7.639945 CACATATCTCCAATGCATGCTATATG 58.360 38.462 20.33 18.61 33.98 1.78
2437 9596 6.262496 GCACATATCTCCAATGCATGCTATAT 59.738 38.462 20.33 0.44 36.30 0.86
2438 9597 5.587443 GCACATATCTCCAATGCATGCTATA 59.413 40.000 20.33 0.00 36.30 1.31
2439 9598 4.398358 GCACATATCTCCAATGCATGCTAT 59.602 41.667 20.33 8.01 36.30 2.97
2440 9599 3.754850 GCACATATCTCCAATGCATGCTA 59.245 43.478 20.33 5.73 36.30 3.49
2441 9600 2.557056 GCACATATCTCCAATGCATGCT 59.443 45.455 20.33 1.07 36.30 3.79
2474 9653 2.189594 TTGCCGATCCATCATCCATC 57.810 50.000 0.00 0.00 0.00 3.51
2475 9654 2.511659 CTTTGCCGATCCATCATCCAT 58.488 47.619 0.00 0.00 0.00 3.41
2476 9655 1.477377 CCTTTGCCGATCCATCATCCA 60.477 52.381 0.00 0.00 0.00 3.41
2477 9656 1.242076 CCTTTGCCGATCCATCATCC 58.758 55.000 0.00 0.00 0.00 3.51
2478 9657 0.595095 GCCTTTGCCGATCCATCATC 59.405 55.000 0.00 0.00 0.00 2.92
2479 9658 0.184451 AGCCTTTGCCGATCCATCAT 59.816 50.000 0.00 0.00 38.69 2.45
2480 9659 0.836606 TAGCCTTTGCCGATCCATCA 59.163 50.000 0.00 0.00 38.69 3.07
2558 9748 2.294512 GCAAAAGCAAGAACTAGCCAGT 59.705 45.455 0.00 0.00 36.19 4.00
2559 9749 2.555757 AGCAAAAGCAAGAACTAGCCAG 59.444 45.455 0.00 0.00 0.00 4.85
2560 9750 2.294233 CAGCAAAAGCAAGAACTAGCCA 59.706 45.455 0.00 0.00 0.00 4.75
2561 9751 2.554032 TCAGCAAAAGCAAGAACTAGCC 59.446 45.455 0.00 0.00 0.00 3.93
2633 9831 5.326200 AGCTAGTGTATGTGTTGACCTAC 57.674 43.478 0.00 0.00 0.00 3.18
2675 9884 3.442977 CCACGAACCAGCTAAGTAGTACT 59.557 47.826 0.00 0.00 0.00 2.73
2676 9885 3.441572 TCCACGAACCAGCTAAGTAGTAC 59.558 47.826 0.00 0.00 0.00 2.73
2679 9888 3.119101 ACATCCACGAACCAGCTAAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
2694 9903 4.100963 TGACATATCACCCTACACATCCAC 59.899 45.833 0.00 0.00 0.00 4.02
2710 9919 2.216046 CCGTCTGCAAGCATGACATAT 58.784 47.619 18.01 0.00 0.00 1.78
2712 9921 1.028330 CCCGTCTGCAAGCATGACAT 61.028 55.000 18.01 0.00 0.00 3.06
2728 9937 6.925610 TCACATGAAAGAGATTAATTCCCG 57.074 37.500 0.00 0.00 0.00 5.14
2744 9953 5.541953 AGAATTGATCGGAGATCACATGA 57.458 39.130 11.75 0.00 45.12 3.07
2748 9957 5.837437 ACACTAGAATTGATCGGAGATCAC 58.163 41.667 11.75 2.35 45.12 3.06
2764 9973 1.417517 CATGCCCATGCCTACACTAGA 59.582 52.381 0.00 0.00 36.33 2.43
2795 10004 8.805175 TCCATTTGCTGAGATTAATCAAAGAAA 58.195 29.630 17.56 11.48 31.33 2.52
2812 10021 0.813184 CCATCGCAGTTCCATTTGCT 59.187 50.000 0.00 0.00 38.16 3.91
2829 10038 9.857957 CAAGTTAACTAACCAAAGTTTTTACCA 57.142 29.630 8.92 0.00 40.20 3.25
2837 10046 3.566742 CCGGCAAGTTAACTAACCAAAGT 59.433 43.478 20.86 0.00 36.88 2.66
2838 10047 3.610821 GCCGGCAAGTTAACTAACCAAAG 60.611 47.826 24.80 12.70 36.88 2.77
2840 10067 1.881324 GCCGGCAAGTTAACTAACCAA 59.119 47.619 24.80 0.00 36.88 3.67
2843 10070 1.817357 AGGCCGGCAAGTTAACTAAC 58.183 50.000 30.85 5.70 36.46 2.34
2846 10073 0.981943 ACTAGGCCGGCAAGTTAACT 59.018 50.000 30.85 16.57 0.00 2.24
2847 10074 1.817357 AACTAGGCCGGCAAGTTAAC 58.183 50.000 33.03 15.22 31.84 2.01
2852 10079 2.822764 CTAGTTAACTAGGCCGGCAAG 58.177 52.381 30.85 26.07 41.65 4.01
2890 10121 3.121778 GCAATCGTGTTGCAGAATTTTCC 59.878 43.478 18.61 0.00 44.34 3.13
2927 10158 9.909644 GATTACTCTAGACTCTAGACTCTAGTG 57.090 40.741 24.32 23.73 38.03 2.74
2930 10161 9.871175 TCAGATTACTCTAGACTCTAGACTCTA 57.129 37.037 11.23 8.35 0.00 2.43
2931 10162 8.777578 TCAGATTACTCTAGACTCTAGACTCT 57.222 38.462 11.23 7.05 0.00 3.24
2932 10163 9.998106 ATTCAGATTACTCTAGACTCTAGACTC 57.002 37.037 11.23 6.82 0.00 3.36
2955 10205 7.536895 TGCATGCAATTATTTGTGGTAATTC 57.463 32.000 20.30 0.00 35.17 2.17
3015 10265 2.171840 AGAGCACATAAGTCAGTCGGT 58.828 47.619 0.00 0.00 0.00 4.69
3016 10266 2.949451 AGAGCACATAAGTCAGTCGG 57.051 50.000 0.00 0.00 0.00 4.79
3020 10270 6.037281 TCGTACTAGAAGAGCACATAAGTCAG 59.963 42.308 0.00 0.00 0.00 3.51
3027 10277 3.439476 ACGTTCGTACTAGAAGAGCACAT 59.561 43.478 0.00 0.00 0.00 3.21
3057 10307 5.128335 TCAGATGAGATCGATCATATTGGGG 59.872 44.000 26.47 9.38 40.02 4.96
3305 10641 4.465480 TGCTGCGCCGCCTTGATA 62.465 61.111 21.42 0.00 0.00 2.15
3392 10740 1.817520 CGACCGGCCATGCATGTAA 60.818 57.895 24.58 0.00 0.00 2.41
3596 10959 1.175983 TGCCGATGTTGTTGTTCCCC 61.176 55.000 0.00 0.00 0.00 4.81
3764 11127 3.640407 GCCAGGCTCCACAGGTCA 61.640 66.667 3.29 0.00 0.00 4.02
3833 11196 8.871629 ATTGATTAATTAACCACCGCCATATA 57.128 30.769 0.00 0.00 0.00 0.86
3834 11197 7.775053 ATTGATTAATTAACCACCGCCATAT 57.225 32.000 0.00 0.00 0.00 1.78
3937 11300 1.159098 ACGTAGAGAGGTCGATCGGC 61.159 60.000 16.41 14.41 0.00 5.54
4091 11455 9.267084 GGTCCTCTCTCAATTCTATAATTTGAC 57.733 37.037 0.00 0.00 32.87 3.18
4100 11464 1.676529 CGCGGTCCTCTCTCAATTCTA 59.323 52.381 0.00 0.00 0.00 2.10
4111 11475 2.181021 CTACCACACGCGGTCCTC 59.819 66.667 12.47 0.00 40.67 3.71
4238 11607 1.394917 GCACACGATGATCACACCTTC 59.605 52.381 0.00 0.00 0.00 3.46
4286 11659 7.984002 TTATTGGAACGCATGATGTAATTTG 57.016 32.000 0.00 0.00 0.00 2.32
4289 11662 7.275888 ACATTATTGGAACGCATGATGTAAT 57.724 32.000 0.00 0.00 31.99 1.89
4334 11709 2.767445 CGACACCTCCATCCGCGTA 61.767 63.158 4.92 0.00 0.00 4.42
4337 11712 2.202756 GTCGACACCTCCATCCGC 60.203 66.667 11.55 0.00 0.00 5.54
4357 11732 8.244113 GGGTAAACCTTGCAATATATTCATAGC 58.756 37.037 0.00 0.00 35.85 2.97
4370 11745 2.054232 TTTCACGGGTAAACCTTGCA 57.946 45.000 0.00 0.00 38.34 4.08
4430 11809 6.642131 AGCACATGATGTTAATTTGTCAACAC 59.358 34.615 0.00 0.00 37.47 3.32
4448 11827 5.105228 ACCCTCAAAATTATTGGAGCACATG 60.105 40.000 0.00 0.00 35.56 3.21
4452 11831 4.220382 CACACCCTCAAAATTATTGGAGCA 59.780 41.667 2.52 0.00 35.56 4.26
4467 11846 1.039233 CCAATGGGATGCACACCCTC 61.039 60.000 25.02 4.21 46.82 4.30
4468 11847 1.000739 CCAATGGGATGCACACCCT 59.999 57.895 25.02 12.38 46.82 4.34
4487 11866 2.509336 CGACACCTCCATCCGTGC 60.509 66.667 0.00 0.00 33.09 5.34
4488 11867 1.153823 GTCGACACCTCCATCCGTG 60.154 63.158 11.55 0.00 36.04 4.94
4491 11870 1.270625 TGTTTGTCGACACCTCCATCC 60.271 52.381 19.90 0.69 0.00 3.51
4516 11895 9.968743 CACGGTTAAAACTTACAATCTATTCTC 57.031 33.333 0.00 0.00 0.00 2.87
4517 11896 9.715121 TCACGGTTAAAACTTACAATCTATTCT 57.285 29.630 0.00 0.00 0.00 2.40
4580 11959 3.798878 ACTGTCAATCGATCGCACTAATG 59.201 43.478 11.09 0.00 0.00 1.90
4581 11960 4.046938 ACTGTCAATCGATCGCACTAAT 57.953 40.909 11.09 0.00 0.00 1.73
4582 11961 3.503827 ACTGTCAATCGATCGCACTAA 57.496 42.857 11.09 0.00 0.00 2.24
4583 11962 3.503827 AACTGTCAATCGATCGCACTA 57.496 42.857 11.09 0.00 0.00 2.74
4584 11963 2.370281 AACTGTCAATCGATCGCACT 57.630 45.000 11.09 0.00 0.00 4.40
4585 11964 4.143200 TGTTAAACTGTCAATCGATCGCAC 60.143 41.667 11.09 4.88 0.00 5.34
4586 11965 3.991121 TGTTAAACTGTCAATCGATCGCA 59.009 39.130 11.09 0.79 0.00 5.10
4602 11981 9.941325 AAAATTATTGGAGCACATGATGTTAAA 57.059 25.926 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.