Multiple sequence alignment - TraesCS7A01G066900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G066900 chr7A 100.000 3724 0 0 1 3724 33484430 33480707 0.000000e+00 6878.0
1 TraesCS7A01G066900 chr7A 86.380 279 32 5 878 1152 540056450 540056726 2.170000e-77 300.0
2 TraesCS7A01G066900 chr7A 86.331 278 34 4 878 1152 540103448 540103724 2.170000e-77 300.0
3 TraesCS7A01G066900 chr7A 90.909 110 4 5 1154 1261 664215719 664215824 3.880000e-30 143.0
4 TraesCS7A01G066900 chr7A 87.805 82 10 0 1238 1319 540056727 540056808 3.060000e-16 97.1
5 TraesCS7A01G066900 chr7A 87.805 82 10 0 1238 1319 540103725 540103806 3.060000e-16 97.1
6 TraesCS7A01G066900 chr7D 94.079 2111 90 18 1237 3339 33150017 33147934 0.000000e+00 3173.0
7 TraesCS7A01G066900 chr7D 90.000 350 34 1 807 1155 33150365 33150016 5.670000e-123 451.0
8 TraesCS7A01G066900 chr7D 84.483 348 18 17 3394 3724 33147938 33147610 1.000000e-80 311.0
9 TraesCS7A01G066900 chr7D 89.796 49 4 1 428 476 33150787 33150740 1.120000e-05 62.1
10 TraesCS7A01G066900 chr4A 93.880 1928 74 15 1237 3151 693495552 693493656 0.000000e+00 2867.0
11 TraesCS7A01G066900 chr4A 91.214 1013 66 11 150 1155 693496547 693495551 0.000000e+00 1356.0
12 TraesCS7A01G066900 chr4A 90.909 110 3 6 1154 1261 507914808 507914704 1.390000e-29 141.0
13 TraesCS7A01G066900 chr4A 96.000 50 2 0 3179 3228 693492479 693492430 8.570000e-12 82.4
14 TraesCS7A01G066900 chr3D 83.448 290 30 14 3316 3592 477025815 477026099 1.720000e-63 254.0
15 TraesCS7A01G066900 chr3D 79.402 301 31 16 3311 3591 598490118 598490407 2.280000e-42 183.0
16 TraesCS7A01G066900 chr6A 82.432 296 38 12 3309 3591 184946192 184946486 2.870000e-61 246.0
17 TraesCS7A01G066900 chr6A 89.815 108 9 2 1142 1247 511530196 511530089 1.800000e-28 137.0
18 TraesCS7A01G066900 chr6A 90.000 110 4 6 1154 1261 338119014 338118910 6.490000e-28 135.0
19 TraesCS7A01G066900 chr6D 81.695 295 42 9 3305 3588 387046896 387047189 6.220000e-58 235.0
20 TraesCS7A01G066900 chr6D 87.500 56 7 0 3250 3305 23080697 23080642 8.630000e-07 65.8
21 TraesCS7A01G066900 chrUn 84.274 248 25 6 3305 3539 161052 161298 2.890000e-56 230.0
22 TraesCS7A01G066900 chrUn 86.740 181 19 5 1240 1416 26776618 26776797 2.930000e-46 196.0
23 TraesCS7A01G066900 chr1D 84.274 248 25 6 3305 3539 18760786 18761032 2.890000e-56 230.0
24 TraesCS7A01G066900 chr1D 95.699 93 4 0 1154 1246 6335508 6335600 2.320000e-32 150.0
25 TraesCS7A01G066900 chr6B 83.529 255 27 12 3305 3546 701604941 701605193 1.350000e-54 224.0
26 TraesCS7A01G066900 chr2A 81.533 287 38 13 3316 3588 750109837 750110122 4.840000e-54 222.0
27 TraesCS7A01G066900 chr2D 81.250 288 36 13 3316 3591 44326842 44326561 2.250000e-52 217.0
28 TraesCS7A01G066900 chr4D 81.139 281 38 10 3316 3588 28548056 28548329 1.050000e-50 211.0
29 TraesCS7A01G066900 chr4D 94.681 94 5 0 1153 1246 182071715 182071808 3.000000e-31 147.0
30 TraesCS7A01G066900 chr5A 90.062 161 10 5 997 1153 631087981 631087823 1.750000e-48 204.0
31 TraesCS7A01G066900 chr5A 85.714 182 22 4 1238 1416 607962574 607962754 4.910000e-44 189.0
32 TraesCS7A01G066900 chr5B 82.162 185 25 7 1238 1416 100048659 100048841 6.440000e-33 152.0
33 TraesCS7A01G066900 chr7B 95.699 93 4 0 1154 1246 490679727 490679635 2.320000e-32 150.0
34 TraesCS7A01G066900 chr7B 85.455 55 6 2 3250 3303 713675606 713675659 5.200000e-04 56.5
35 TraesCS7A01G066900 chr3B 93.000 100 5 2 1149 1246 3660764 3660863 1.080000e-30 145.0
36 TraesCS7A01G066900 chr4B 90.909 110 3 6 1154 1261 531092037 531091933 1.390000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G066900 chr7A 33480707 33484430 3723 True 6878.000000 6878 100.0000 1 3724 1 chr7A.!!$R1 3723
1 TraesCS7A01G066900 chr7D 33147610 33150787 3177 True 999.275000 3173 89.5895 428 3724 4 chr7D.!!$R1 3296
2 TraesCS7A01G066900 chr4A 693492430 693496547 4117 True 1435.133333 2867 93.6980 150 3228 3 chr4A.!!$R2 3078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 348 0.034616 AGTCACAGCTTCTGGTGAGC 59.965 55.0 4.94 1.87 43.76 4.26 F
1169 1241 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 2291 0.038526 CTTTGCCTTTCCAGCAGCAG 60.039 55.0 0.0 0.0 42.17 4.24 R
2919 3000 0.751452 GAGGACGAATACCTGGGGTC 59.249 60.0 0.0 0.0 37.93 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.442212 GATCTAGGGTTTAGCGGCTC 57.558 55.000 5.39 0.00 0.00 4.70
20 21 1.001068 GATCTAGGGTTTAGCGGCTCC 59.999 57.143 5.39 0.83 0.00 4.70
21 22 1.067582 CTAGGGTTTAGCGGCTCCG 59.932 63.158 5.39 3.56 43.09 4.63
22 23 1.380246 TAGGGTTTAGCGGCTCCGA 60.380 57.895 13.11 0.00 42.83 4.55
23 24 0.757935 TAGGGTTTAGCGGCTCCGAT 60.758 55.000 13.11 8.60 42.83 4.18
24 25 1.153229 GGGTTTAGCGGCTCCGATT 60.153 57.895 13.11 1.84 42.83 3.34
25 26 1.436983 GGGTTTAGCGGCTCCGATTG 61.437 60.000 13.11 0.00 42.83 2.67
26 27 1.436983 GGTTTAGCGGCTCCGATTGG 61.437 60.000 13.11 0.00 42.83 3.16
27 28 1.153249 TTTAGCGGCTCCGATTGGG 60.153 57.895 13.11 0.00 42.83 4.12
28 29 2.602746 TTTAGCGGCTCCGATTGGGG 62.603 60.000 13.11 0.00 42.83 4.96
34 35 2.584608 CTCCGATTGGGGCTCGTT 59.415 61.111 0.00 0.00 36.01 3.85
35 36 1.521681 CTCCGATTGGGGCTCGTTC 60.522 63.158 0.00 0.00 36.01 3.95
36 37 2.513897 CCGATTGGGGCTCGTTCC 60.514 66.667 0.00 0.00 34.36 3.62
37 38 2.513897 CGATTGGGGCTCGTTCCC 60.514 66.667 6.24 6.24 45.80 3.97
38 39 2.998949 GATTGGGGCTCGTTCCCT 59.001 61.111 13.02 0.00 45.80 4.20
39 40 1.153147 GATTGGGGCTCGTTCCCTC 60.153 63.158 13.02 5.78 45.80 4.30
40 41 1.616628 ATTGGGGCTCGTTCCCTCT 60.617 57.895 13.02 0.00 45.80 3.69
41 42 1.915078 ATTGGGGCTCGTTCCCTCTG 61.915 60.000 13.02 0.00 45.80 3.35
42 43 3.003763 GGGGCTCGTTCCCTCTGT 61.004 66.667 13.02 0.00 45.80 3.41
43 44 2.593956 GGGGCTCGTTCCCTCTGTT 61.594 63.158 13.02 0.00 45.80 3.16
44 45 1.376037 GGGCTCGTTCCCTCTGTTG 60.376 63.158 7.36 0.00 43.13 3.33
45 46 1.671742 GGCTCGTTCCCTCTGTTGA 59.328 57.895 0.00 0.00 0.00 3.18
46 47 0.250513 GGCTCGTTCCCTCTGTTGAT 59.749 55.000 0.00 0.00 0.00 2.57
47 48 1.339151 GGCTCGTTCCCTCTGTTGATT 60.339 52.381 0.00 0.00 0.00 2.57
48 49 2.427506 GCTCGTTCCCTCTGTTGATTT 58.572 47.619 0.00 0.00 0.00 2.17
49 50 2.160417 GCTCGTTCCCTCTGTTGATTTG 59.840 50.000 0.00 0.00 0.00 2.32
50 51 2.744202 CTCGTTCCCTCTGTTGATTTGG 59.256 50.000 0.00 0.00 0.00 3.28
51 52 1.200020 CGTTCCCTCTGTTGATTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
52 53 1.200020 GTTCCCTCTGTTGATTTGGCG 59.800 52.381 0.00 0.00 0.00 5.69
53 54 0.400213 TCCCTCTGTTGATTTGGCGT 59.600 50.000 0.00 0.00 0.00 5.68
54 55 0.804989 CCCTCTGTTGATTTGGCGTC 59.195 55.000 0.00 0.00 0.00 5.19
55 56 0.804989 CCTCTGTTGATTTGGCGTCC 59.195 55.000 0.00 0.00 0.00 4.79
56 57 1.611673 CCTCTGTTGATTTGGCGTCCT 60.612 52.381 0.00 0.00 0.00 3.85
57 58 1.734465 CTCTGTTGATTTGGCGTCCTC 59.266 52.381 0.00 0.00 0.00 3.71
58 59 0.443869 CTGTTGATTTGGCGTCCTCG 59.556 55.000 0.00 0.00 40.37 4.63
59 60 0.250124 TGTTGATTTGGCGTCCTCGT 60.250 50.000 0.00 0.00 39.49 4.18
60 61 0.442699 GTTGATTTGGCGTCCTCGTC 59.557 55.000 0.00 0.00 42.45 4.20
61 62 0.672401 TTGATTTGGCGTCCTCGTCC 60.672 55.000 0.00 0.00 41.33 4.79
62 63 2.125673 ATTTGGCGTCCTCGTCCG 60.126 61.111 0.00 0.00 41.33 4.79
63 64 2.552585 GATTTGGCGTCCTCGTCCGA 62.553 60.000 0.00 0.00 41.33 4.55
64 65 2.162338 ATTTGGCGTCCTCGTCCGAA 62.162 55.000 0.00 0.00 41.33 4.30
65 66 2.162338 TTTGGCGTCCTCGTCCGAAT 62.162 55.000 0.00 0.00 41.33 3.34
66 67 2.162338 TTGGCGTCCTCGTCCGAATT 62.162 55.000 0.00 0.00 41.33 2.17
67 68 1.877165 GGCGTCCTCGTCCGAATTC 60.877 63.158 0.00 0.00 39.49 2.17
68 69 1.153901 GCGTCCTCGTCCGAATTCA 60.154 57.895 6.22 0.00 39.49 2.57
69 70 1.411493 GCGTCCTCGTCCGAATTCAC 61.411 60.000 6.22 0.00 39.49 3.18
70 71 1.132199 CGTCCTCGTCCGAATTCACG 61.132 60.000 11.07 11.07 37.36 4.35
78 79 3.864686 CGAATTCACGGCGGGCTG 61.865 66.667 13.24 0.00 0.00 4.85
79 80 3.508840 GAATTCACGGCGGGCTGG 61.509 66.667 13.24 0.00 0.00 4.85
96 97 4.432741 GGAACCAGCAGGAGGGGC 62.433 72.222 0.35 0.00 38.69 5.80
97 98 4.785453 GAACCAGCAGGAGGGGCG 62.785 72.222 0.35 0.00 38.69 6.13
107 108 4.864334 GAGGGGCGGCTGGTCATG 62.864 72.222 9.56 0.00 0.00 3.07
110 111 4.740822 GGGCGGCTGGTCATGGTT 62.741 66.667 9.56 0.00 0.00 3.67
111 112 2.676471 GGCGGCTGGTCATGGTTT 60.676 61.111 0.00 0.00 0.00 3.27
112 113 2.568090 GCGGCTGGTCATGGTTTG 59.432 61.111 0.00 0.00 0.00 2.93
113 114 2.993471 GCGGCTGGTCATGGTTTGG 61.993 63.158 0.00 0.00 0.00 3.28
114 115 1.603455 CGGCTGGTCATGGTTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
115 116 1.178534 CGGCTGGTCATGGTTTGGTT 61.179 55.000 0.00 0.00 0.00 3.67
116 117 0.603065 GGCTGGTCATGGTTTGGTTC 59.397 55.000 0.00 0.00 0.00 3.62
117 118 0.603065 GCTGGTCATGGTTTGGTTCC 59.397 55.000 0.00 0.00 0.00 3.62
118 119 1.256812 CTGGTCATGGTTTGGTTCCC 58.743 55.000 0.00 0.00 0.00 3.97
119 120 0.856982 TGGTCATGGTTTGGTTCCCT 59.143 50.000 0.00 0.00 0.00 4.20
120 121 1.219213 TGGTCATGGTTTGGTTCCCTT 59.781 47.619 0.00 0.00 0.00 3.95
121 122 2.325484 GGTCATGGTTTGGTTCCCTTT 58.675 47.619 0.00 0.00 0.00 3.11
122 123 2.703536 GGTCATGGTTTGGTTCCCTTTT 59.296 45.455 0.00 0.00 0.00 2.27
123 124 3.494223 GGTCATGGTTTGGTTCCCTTTTG 60.494 47.826 0.00 0.00 0.00 2.44
124 125 2.103941 TCATGGTTTGGTTCCCTTTTGC 59.896 45.455 0.00 0.00 0.00 3.68
125 126 1.573108 TGGTTTGGTTCCCTTTTGCA 58.427 45.000 0.00 0.00 0.00 4.08
126 127 1.909302 TGGTTTGGTTCCCTTTTGCAA 59.091 42.857 0.00 0.00 0.00 4.08
127 128 2.507471 TGGTTTGGTTCCCTTTTGCAAT 59.493 40.909 0.00 0.00 0.00 3.56
128 129 3.054065 TGGTTTGGTTCCCTTTTGCAATT 60.054 39.130 0.00 0.00 0.00 2.32
129 130 4.164221 TGGTTTGGTTCCCTTTTGCAATTA 59.836 37.500 0.00 0.00 0.00 1.40
130 131 4.754618 GGTTTGGTTCCCTTTTGCAATTAG 59.245 41.667 0.00 0.65 0.00 1.73
131 132 5.454045 GGTTTGGTTCCCTTTTGCAATTAGA 60.454 40.000 0.00 0.00 0.00 2.10
132 133 4.864704 TGGTTCCCTTTTGCAATTAGAC 57.135 40.909 0.00 0.00 0.00 2.59
133 134 3.254657 TGGTTCCCTTTTGCAATTAGACG 59.745 43.478 0.00 0.00 0.00 4.18
134 135 3.366985 GGTTCCCTTTTGCAATTAGACGG 60.367 47.826 0.00 0.00 0.00 4.79
135 136 1.816224 TCCCTTTTGCAATTAGACGGC 59.184 47.619 0.00 0.00 0.00 5.68
136 137 1.467374 CCCTTTTGCAATTAGACGGCG 60.467 52.381 4.80 4.80 0.00 6.46
137 138 1.259316 CTTTTGCAATTAGACGGCGC 58.741 50.000 6.90 0.00 0.00 6.53
138 139 0.453615 TTTTGCAATTAGACGGCGCG 60.454 50.000 6.90 0.00 0.00 6.86
139 140 2.842588 TTTGCAATTAGACGGCGCGC 62.843 55.000 25.94 25.94 0.00 6.86
140 141 3.564027 GCAATTAGACGGCGCGCT 61.564 61.111 32.29 12.85 0.00 5.92
141 142 2.321060 CAATTAGACGGCGCGCTG 59.679 61.111 36.88 36.88 0.00 5.18
142 143 2.164663 CAATTAGACGGCGCGCTGA 61.165 57.895 43.85 23.97 0.00 4.26
143 144 1.878522 AATTAGACGGCGCGCTGAG 60.879 57.895 43.85 29.36 0.00 3.35
144 145 2.558554 AATTAGACGGCGCGCTGAGT 62.559 55.000 43.85 32.21 0.00 3.41
145 146 3.964221 TTAGACGGCGCGCTGAGTG 62.964 63.158 43.85 23.60 0.00 3.51
154 155 2.554775 CGCTGAGTGCAAGTGCTG 59.445 61.111 4.69 0.00 43.06 4.41
176 177 3.002042 GGAGCTTGATGTGATGTTGATCG 59.998 47.826 0.00 0.00 0.00 3.69
177 178 3.603532 AGCTTGATGTGATGTTGATCGT 58.396 40.909 0.00 0.00 0.00 3.73
179 180 4.093514 GCTTGATGTGATGTTGATCGTTG 58.906 43.478 0.00 0.00 0.00 4.10
180 181 4.655027 CTTGATGTGATGTTGATCGTTGG 58.345 43.478 0.00 0.00 0.00 3.77
181 182 3.673902 TGATGTGATGTTGATCGTTGGT 58.326 40.909 0.00 0.00 0.00 3.67
182 183 3.436359 TGATGTGATGTTGATCGTTGGTG 59.564 43.478 0.00 0.00 0.00 4.17
183 184 3.118905 TGTGATGTTGATCGTTGGTGA 57.881 42.857 0.00 0.00 0.00 4.02
184 185 2.805671 TGTGATGTTGATCGTTGGTGAC 59.194 45.455 0.00 0.00 0.00 3.67
185 186 2.805671 GTGATGTTGATCGTTGGTGACA 59.194 45.455 0.00 0.00 39.83 3.58
204 206 1.872952 CATTTGAGTGTCAGGTTCGCA 59.127 47.619 0.00 0.00 0.00 5.10
317 321 2.358737 GCTGGCCTGTGTAGCGTT 60.359 61.111 11.69 0.00 0.00 4.84
322 326 0.459759 GGCCTGTGTAGCGTTACTCC 60.460 60.000 10.88 2.34 0.00 3.85
324 328 0.175073 CCTGTGTAGCGTTACTCCCC 59.825 60.000 10.88 0.00 0.00 4.81
329 333 1.180029 GTAGCGTTACTCCCCAGTCA 58.820 55.000 1.72 0.00 33.62 3.41
331 335 0.830444 AGCGTTACTCCCCAGTCACA 60.830 55.000 0.00 0.00 33.62 3.58
332 336 0.389948 GCGTTACTCCCCAGTCACAG 60.390 60.000 0.00 0.00 33.62 3.66
334 338 0.977395 GTTACTCCCCAGTCACAGCT 59.023 55.000 0.00 0.00 33.62 4.24
335 339 1.348036 GTTACTCCCCAGTCACAGCTT 59.652 52.381 0.00 0.00 33.62 3.74
338 342 0.036577 CTCCCCAGTCACAGCTTCTG 60.037 60.000 0.00 0.00 37.52 3.02
339 343 1.002868 CCCCAGTCACAGCTTCTGG 60.003 63.158 13.75 13.75 45.67 3.86
340 344 1.757306 CCCAGTCACAGCTTCTGGT 59.243 57.895 17.22 0.00 44.92 4.00
341 345 0.604780 CCCAGTCACAGCTTCTGGTG 60.605 60.000 17.22 8.81 44.92 4.17
344 348 0.034616 AGTCACAGCTTCTGGTGAGC 59.965 55.000 4.94 1.87 43.76 4.26
346 350 2.031516 CACAGCTTCTGGTGAGCGG 61.032 63.158 2.17 0.00 43.76 5.52
347 351 2.210013 ACAGCTTCTGGTGAGCGGA 61.210 57.895 3.40 0.00 43.76 5.54
348 352 1.447489 CAGCTTCTGGTGAGCGGAG 60.447 63.158 0.00 0.00 43.76 4.63
376 380 1.615883 ACTGTGGAGAGTGTACTGCTG 59.384 52.381 0.00 0.00 0.00 4.41
377 381 0.318441 TGTGGAGAGTGTACTGCTGC 59.682 55.000 0.00 0.00 0.00 5.25
380 384 1.694150 TGGAGAGTGTACTGCTGCTTT 59.306 47.619 0.00 0.00 0.00 3.51
386 390 4.214971 AGAGTGTACTGCTGCTTTCAATTG 59.785 41.667 0.00 0.00 0.00 2.32
387 391 4.136796 AGTGTACTGCTGCTTTCAATTGA 58.863 39.130 3.38 3.38 0.00 2.57
398 402 2.652941 TTCAATTGAAGGCGGCATTC 57.347 45.000 19.51 19.51 0.00 2.67
401 405 0.174162 AATTGAAGGCGGCATTCTGC 59.826 50.000 25.24 3.44 44.08 4.26
413 417 1.796617 GCATTCTGCGCAGTTGGATTC 60.797 52.381 34.70 16.87 31.71 2.52
414 418 1.741706 CATTCTGCGCAGTTGGATTCT 59.258 47.619 34.70 10.47 0.00 2.40
415 419 2.760634 TTCTGCGCAGTTGGATTCTA 57.239 45.000 34.70 11.47 0.00 2.10
460 464 5.724328 TCAGAGTCATGTCCATAACTGTTC 58.276 41.667 0.00 0.00 0.00 3.18
481 485 1.880027 ACTCAGCCCAATGTTCGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
482 486 2.154462 CTCAGCCCAATGTTCGAAACT 58.846 47.619 0.00 0.00 0.00 2.66
483 487 2.151202 TCAGCCCAATGTTCGAAACTC 58.849 47.619 0.00 0.00 0.00 3.01
553 588 5.528043 TTTGAAACTATGTGGCATGTTGT 57.472 34.783 0.00 0.00 0.00 3.32
560 595 1.530419 GTGGCATGTTGTGTCCCCA 60.530 57.895 0.00 0.00 0.00 4.96
585 620 4.040461 GGTTTTGGAGATCCATATCGAGGA 59.960 45.833 1.61 0.00 46.97 3.71
620 655 0.962489 CCGCTATCCGAGGAACTGAT 59.038 55.000 0.00 0.00 41.55 2.90
629 664 2.159170 CCGAGGAACTGATTCTGGAGTC 60.159 54.545 0.00 0.00 41.55 3.36
636 671 5.512232 GGAACTGATTCTGGAGTCAAAGTCT 60.512 44.000 0.00 0.00 34.98 3.24
672 707 7.355778 AGTTGTTCAGCTTCTAATTCTTTTCG 58.644 34.615 0.00 0.00 0.00 3.46
693 728 0.833287 TGGAGGCTAGCTGATTGACC 59.167 55.000 15.72 8.23 0.00 4.02
725 760 5.610398 TCTCTTCTGCATTGAGTAAACACA 58.390 37.500 9.53 0.00 0.00 3.72
813 884 2.423185 GGTTCATGCGTTCATCCATTCA 59.577 45.455 0.00 0.00 0.00 2.57
817 888 3.946558 TCATGCGTTCATCCATTCATGAA 59.053 39.130 11.26 11.26 39.91 2.57
820 891 3.946558 TGCGTTCATCCATTCATGAATCA 59.053 39.130 18.16 8.39 43.17 2.57
821 892 4.398673 TGCGTTCATCCATTCATGAATCAA 59.601 37.500 18.16 9.56 43.17 2.57
874 945 8.094798 TGACATAACAACAAGACAATCTAACC 57.905 34.615 0.00 0.00 0.00 2.85
876 947 8.635765 ACATAACAACAAGACAATCTAACCAT 57.364 30.769 0.00 0.00 0.00 3.55
911 982 4.997395 GCAATACCTTCCGTGTGATATCAT 59.003 41.667 9.02 0.00 0.00 2.45
1153 1225 8.342634 GTTGACATATGAAAGTTACACTGTGTT 58.657 33.333 19.73 0.00 0.00 3.32
1154 1226 9.549078 TTGACATATGAAAGTTACACTGTGTTA 57.451 29.630 19.73 7.21 0.00 2.41
1155 1227 8.984764 TGACATATGAAAGTTACACTGTGTTAC 58.015 33.333 19.73 19.46 30.73 2.50
1156 1228 9.204570 GACATATGAAAGTTACACTGTGTTACT 57.795 33.333 22.68 22.68 41.37 2.24
1157 1229 9.204570 ACATATGAAAGTTACACTGTGTTACTC 57.795 33.333 26.74 18.20 39.04 2.59
1158 1230 8.656849 CATATGAAAGTTACACTGTGTTACTCC 58.343 37.037 26.74 21.61 39.04 3.85
1159 1231 5.362263 TGAAAGTTACACTGTGTTACTCCC 58.638 41.667 26.74 21.35 39.04 4.30
1160 1232 5.129815 TGAAAGTTACACTGTGTTACTCCCT 59.870 40.000 26.74 16.92 39.04 4.20
1161 1233 4.868314 AGTTACACTGTGTTACTCCCTC 57.132 45.455 22.68 1.61 35.60 4.30
1162 1234 3.577415 AGTTACACTGTGTTACTCCCTCC 59.423 47.826 22.68 0.97 35.60 4.30
1163 1235 0.966920 ACACTGTGTTACTCCCTCCG 59.033 55.000 7.80 0.00 0.00 4.63
1164 1236 0.966920 CACTGTGTTACTCCCTCCGT 59.033 55.000 0.00 0.00 0.00 4.69
1165 1237 1.067776 CACTGTGTTACTCCCTCCGTC 60.068 57.143 0.00 0.00 0.00 4.79
1166 1238 0.531200 CTGTGTTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
1167 1239 0.901580 TGTGTTACTCCCTCCGTCCC 60.902 60.000 0.00 0.00 0.00 4.46
1168 1240 0.901580 GTGTTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
1169 1241 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
1170 1242 1.288633 TGTTACTCCCTCCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
1171 1243 2.292389 TGTTACTCCCTCCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
1172 1244 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
1173 1245 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1174 1246 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1175 1247 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1176 1248 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1177 1249 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1178 1250 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1179 1251 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
1180 1252 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
1181 1253 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
1182 1254 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
1183 1255 6.239487 CCTCCGTCCCATAATGTAAGATGTTA 60.239 42.308 0.00 0.00 0.00 2.41
1184 1256 7.311092 TCCGTCCCATAATGTAAGATGTTAT 57.689 36.000 0.00 0.00 0.00 1.89
1185 1257 7.741785 TCCGTCCCATAATGTAAGATGTTATT 58.258 34.615 0.00 0.00 0.00 1.40
1186 1258 8.215050 TCCGTCCCATAATGTAAGATGTTATTT 58.785 33.333 0.00 0.00 0.00 1.40
1187 1259 8.846211 CCGTCCCATAATGTAAGATGTTATTTT 58.154 33.333 0.00 0.00 0.00 1.82
1230 1302 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1231 1303 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1232 1304 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1233 1305 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1234 1306 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1235 1307 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1387 1460 9.774742 CTTGTTTTAGACTGAAGGCAATATTAC 57.225 33.333 0.00 0.00 0.00 1.89
1709 1785 7.411480 GCATTCAGAATTGTCACAAACATCATG 60.411 37.037 0.00 0.00 37.82 3.07
1788 1864 6.036517 GTGTGGTTCTTATGATAGTTGCTCTG 59.963 42.308 0.00 0.00 0.00 3.35
1859 1935 3.133003 TGAACCTCCTAGCACTAATGAGC 59.867 47.826 0.00 0.00 0.00 4.26
1916 1992 0.109153 TGGCTGAGAAGAAAGCTGCA 59.891 50.000 1.02 0.00 39.46 4.41
2006 2082 0.250901 AACGAGACAATGCCCTTGCT 60.251 50.000 0.00 0.00 38.50 3.91
2045 2121 7.593644 GCCCGTACAAATGGATTTAATATGAAC 59.406 37.037 0.00 0.00 33.01 3.18
2047 2123 9.663904 CCGTACAAATGGATTTAATATGAACAG 57.336 33.333 0.00 0.00 33.01 3.16
2051 2127 7.068103 ACAAATGGATTTAATATGAACAGCGGA 59.932 33.333 0.00 0.00 0.00 5.54
2053 2129 7.581213 ATGGATTTAATATGAACAGCGGAAA 57.419 32.000 0.00 0.00 0.00 3.13
2084 2160 1.270199 CCAGGATCTCTCAATGGAGCG 60.270 57.143 0.00 0.00 41.13 5.03
2129 2205 3.120796 GCCCCATGCTCAATCATCA 57.879 52.632 0.00 0.00 36.87 3.07
2144 2220 1.604593 ATCACCACTGCAACTGGCC 60.605 57.895 9.58 0.00 43.89 5.36
2165 2241 3.557686 CCGATTCTCCATATGACCATGCA 60.558 47.826 3.65 0.00 0.00 3.96
2195 2271 2.547855 GCACATATCAGACGCATACCCA 60.548 50.000 0.00 0.00 0.00 4.51
2215 2291 2.185310 ATCTCAACAGCCCCGGTGAC 62.185 60.000 0.00 0.00 34.87 3.67
2330 2406 1.954362 GCGGTGACTGGAGAGATGCT 61.954 60.000 0.00 0.00 0.00 3.79
2388 2464 2.602660 GCTTCTGAGATGAAGAACGAGC 59.397 50.000 8.25 0.00 44.40 5.03
2399 2475 1.005394 GAACGAGCGGAAGGACCAA 60.005 57.895 0.00 0.00 38.90 3.67
2573 2649 2.681064 ATGCCCAACAAGCGCCAT 60.681 55.556 2.29 0.00 0.00 4.40
2600 2676 2.722201 GGGCGGACGGAAGATGAGT 61.722 63.158 0.00 0.00 0.00 3.41
2736 2812 1.520342 CGGTAGCTCTGCTGCTTCC 60.520 63.158 0.00 10.68 43.96 3.46
2743 2819 1.446907 CTCTGCTGCTTCCGTTCAAT 58.553 50.000 0.00 0.00 0.00 2.57
2755 2831 5.671493 CTTCCGTTCAATATGTAAGGAGGT 58.329 41.667 0.00 0.00 0.00 3.85
2782 2858 3.494398 GCGGCAAAGGTCCTATAATCTCA 60.494 47.826 0.00 0.00 0.00 3.27
2802 2878 4.717313 GCTGGGGTTGGACGGGTC 62.717 72.222 0.00 0.00 0.00 4.46
2803 2879 3.246112 CTGGGGTTGGACGGGTCA 61.246 66.667 0.75 0.00 0.00 4.02
2804 2880 2.530661 TGGGGTTGGACGGGTCAT 60.531 61.111 0.75 0.00 0.00 3.06
2805 2881 2.271173 GGGGTTGGACGGGTCATC 59.729 66.667 0.75 0.00 0.00 2.92
2806 2882 2.598787 GGGGTTGGACGGGTCATCA 61.599 63.158 0.75 0.00 0.00 3.07
2807 2883 1.377229 GGGTTGGACGGGTCATCAA 59.623 57.895 0.75 0.00 0.00 2.57
2808 2884 0.958876 GGGTTGGACGGGTCATCAAC 60.959 60.000 10.57 10.57 38.84 3.18
2842 2918 4.454678 TCTGTAATGTCATTGAGGGATGC 58.545 43.478 8.39 0.00 0.00 3.91
2869 2945 3.108376 AGAATTCTGTGTAGGTCCTCCC 58.892 50.000 7.30 0.00 0.00 4.30
2888 2964 1.377333 CCCTTTCTGAACCCCGAGC 60.377 63.158 0.00 0.00 0.00 5.03
2936 3017 1.440476 CGACCCCAGGTATTCGTCC 59.560 63.158 0.00 0.00 35.25 4.79
2984 3065 7.991460 ACTACTAGATTTAATTGGTTGTAGGCC 59.009 37.037 0.00 0.00 31.95 5.19
2985 3066 6.727394 ACTAGATTTAATTGGTTGTAGGCCA 58.273 36.000 5.01 0.00 0.00 5.36
2988 3069 9.349713 CTAGATTTAATTGGTTGTAGGCCATTA 57.650 33.333 5.01 0.00 35.71 1.90
2991 3072 9.476202 GATTTAATTGGTTGTAGGCCATTATTC 57.524 33.333 5.01 0.00 35.71 1.75
3001 3082 5.593909 TGTAGGCCATTATTCCTTTGTCATG 59.406 40.000 5.01 0.00 34.02 3.07
3006 3087 6.713762 CCATTATTCCTTTGTCATGGCTTA 57.286 37.500 0.00 0.00 0.00 3.09
3007 3088 6.507023 CCATTATTCCTTTGTCATGGCTTAC 58.493 40.000 0.00 0.00 0.00 2.34
3008 3089 6.096705 CCATTATTCCTTTGTCATGGCTTACA 59.903 38.462 0.00 0.00 0.00 2.41
3009 3090 7.201938 CCATTATTCCTTTGTCATGGCTTACAT 60.202 37.037 0.00 0.00 41.57 2.29
3010 3091 7.716799 TTATTCCTTTGTCATGGCTTACATT 57.283 32.000 0.00 0.00 37.84 2.71
3066 3147 3.628008 TCCTGCAGGATAGTAGACGAAA 58.372 45.455 32.00 4.40 39.78 3.46
3092 3178 6.297582 AGAAAGAAGATAATAGCAGCAGCAT 58.702 36.000 3.17 0.00 45.49 3.79
3145 3231 5.070180 TCAGCAGTGAAATCCCATTTTTCAA 59.930 36.000 0.00 0.00 42.82 2.69
3269 4512 4.143305 GCACGAAAGTAGCTTTCTACACTG 60.143 45.833 16.42 5.60 45.19 3.66
3285 4529 0.403271 ACTGTGGCTCAAATGCTCCT 59.597 50.000 0.00 0.00 0.00 3.69
3304 4548 4.643463 TCCTGGCGTGAACAGTAAAATAA 58.357 39.130 0.00 0.00 34.16 1.40
3330 4574 9.816354 ATACTTTTAAGAAATGTTTGTTGTGCT 57.184 25.926 0.00 0.00 32.00 4.40
3334 4578 8.988064 TTTAAGAAATGTTTGTTGTGCTTGTA 57.012 26.923 0.00 0.00 0.00 2.41
3335 4579 8.988064 TTAAGAAATGTTTGTTGTGCTTGTAA 57.012 26.923 0.00 0.00 0.00 2.41
3336 4580 7.897575 AAGAAATGTTTGTTGTGCTTGTAAA 57.102 28.000 0.00 0.00 0.00 2.01
3337 4581 7.897575 AGAAATGTTTGTTGTGCTTGTAAAA 57.102 28.000 0.00 0.00 0.00 1.52
3338 4582 8.491331 AGAAATGTTTGTTGTGCTTGTAAAAT 57.509 26.923 0.00 0.00 0.00 1.82
3339 4583 8.945057 AGAAATGTTTGTTGTGCTTGTAAAATT 58.055 25.926 0.00 0.00 0.00 1.82
3340 4584 9.553418 GAAATGTTTGTTGTGCTTGTAAAATTT 57.447 25.926 0.00 0.00 0.00 1.82
3341 4585 9.553418 AAATGTTTGTTGTGCTTGTAAAATTTC 57.447 25.926 0.00 0.00 0.00 2.17
3342 4586 7.658179 TGTTTGTTGTGCTTGTAAAATTTCA 57.342 28.000 0.00 0.00 0.00 2.69
3343 4587 8.261492 TGTTTGTTGTGCTTGTAAAATTTCAT 57.739 26.923 0.00 0.00 0.00 2.57
3344 4588 8.386606 TGTTTGTTGTGCTTGTAAAATTTCATC 58.613 29.630 0.00 0.00 0.00 2.92
3345 4589 8.386606 GTTTGTTGTGCTTGTAAAATTTCATCA 58.613 29.630 0.00 0.00 0.00 3.07
3346 4590 7.462109 TGTTGTGCTTGTAAAATTTCATCAC 57.538 32.000 0.00 0.00 0.00 3.06
3347 4591 6.198029 TGTTGTGCTTGTAAAATTTCATCACG 59.802 34.615 0.00 0.00 0.00 4.35
3348 4592 6.066054 TGTGCTTGTAAAATTTCATCACGA 57.934 33.333 0.00 0.00 0.00 4.35
3349 4593 6.499172 TGTGCTTGTAAAATTTCATCACGAA 58.501 32.000 0.00 0.00 0.00 3.85
3360 4604 5.703978 TTTCATCACGAAATCACATTGGT 57.296 34.783 0.00 0.00 38.72 3.67
3361 4605 4.683501 TCATCACGAAATCACATTGGTG 57.316 40.909 0.00 0.00 46.66 4.17
3371 4615 2.244000 ACATTGGTGAAAGTCGCGG 58.756 52.632 6.13 0.00 0.00 6.46
3372 4616 1.154225 CATTGGTGAAAGTCGCGGC 60.154 57.895 0.21 0.21 0.00 6.53
3373 4617 1.599518 ATTGGTGAAAGTCGCGGCA 60.600 52.632 15.58 0.00 0.00 5.69
3374 4618 1.169661 ATTGGTGAAAGTCGCGGCAA 61.170 50.000 15.58 0.00 0.00 4.52
3375 4619 1.377366 TTGGTGAAAGTCGCGGCAAA 61.377 50.000 15.58 0.00 0.00 3.68
3376 4620 1.357334 GGTGAAAGTCGCGGCAAAA 59.643 52.632 15.58 0.00 0.00 2.44
3377 4621 0.248702 GGTGAAAGTCGCGGCAAAAA 60.249 50.000 15.58 0.00 0.00 1.94
3417 4661 8.119226 CCAAAATGCGTTTTAAACATTTTCAGA 58.881 29.630 16.02 0.00 45.92 3.27
3422 4666 7.836512 TGCGTTTTAAACATTTTCAGAACATC 58.163 30.769 8.61 0.00 0.00 3.06
3423 4667 6.995633 GCGTTTTAAACATTTTCAGAACATCG 59.004 34.615 8.61 0.00 0.00 3.84
3462 4706 3.572255 ACGCCTTACACCAATGTGATTTT 59.428 39.130 0.00 0.00 45.76 1.82
3464 4708 4.558496 CGCCTTACACCAATGTGATTTTGT 60.558 41.667 0.00 0.00 45.76 2.83
3467 4711 6.690530 CCTTACACCAATGTGATTTTGTGAT 58.309 36.000 0.00 0.00 45.76 3.06
3468 4712 6.587226 CCTTACACCAATGTGATTTTGTGATG 59.413 38.462 0.00 0.00 45.76 3.07
3469 4713 5.787953 ACACCAATGTGATTTTGTGATGA 57.212 34.783 0.00 0.00 45.76 2.92
3470 4714 6.159299 ACACCAATGTGATTTTGTGATGAA 57.841 33.333 0.00 0.00 45.76 2.57
3471 4715 6.761312 ACACCAATGTGATTTTGTGATGAAT 58.239 32.000 0.00 0.00 45.76 2.57
3472 4716 7.218614 ACACCAATGTGATTTTGTGATGAATT 58.781 30.769 0.00 0.00 45.76 2.17
3473 4717 7.716123 ACACCAATGTGATTTTGTGATGAATTT 59.284 29.630 0.00 0.00 45.76 1.82
3474 4718 8.561212 CACCAATGTGATTTTGTGATGAATTTT 58.439 29.630 0.00 0.00 45.76 1.82
3475 4719 8.776470 ACCAATGTGATTTTGTGATGAATTTTC 58.224 29.630 0.00 0.00 0.00 2.29
3479 4723 6.645827 TGTGATTTTGTGATGAATTTTCGCAT 59.354 30.769 6.46 0.00 33.91 4.73
3495 4739 2.486203 TCGCATACACACCAAACATTCC 59.514 45.455 0.00 0.00 0.00 3.01
3515 4759 8.911965 ACATTCCTTAAATTTTGCCACAAAAAT 58.088 25.926 9.32 0.00 40.60 1.82
3516 4760 9.747293 CATTCCTTAAATTTTGCCACAAAAATT 57.253 25.926 9.32 9.74 46.58 1.82
3570 4827 1.305623 CCCAGGAGCATTTGAGCCT 59.694 57.895 0.00 0.00 34.23 4.58
3573 4830 1.035932 CAGGAGCATTTGAGCCTGGG 61.036 60.000 0.00 0.00 43.22 4.45
3587 4844 2.152016 GCCTGGGTGTAGAAACTTCAC 58.848 52.381 0.00 0.00 32.31 3.18
3591 4848 4.504864 CCTGGGTGTAGAAACTTCACATCA 60.505 45.833 9.80 7.03 34.26 3.07
3593 4850 3.437049 GGGTGTAGAAACTTCACATCAGC 59.563 47.826 9.80 0.00 34.26 4.26
3595 4852 4.319177 GTGTAGAAACTTCACATCAGCCT 58.681 43.478 0.00 0.00 33.12 4.58
3596 4853 4.390297 GTGTAGAAACTTCACATCAGCCTC 59.610 45.833 0.00 0.00 33.12 4.70
3597 4854 4.284490 TGTAGAAACTTCACATCAGCCTCT 59.716 41.667 0.00 0.00 0.00 3.69
3598 4855 4.363991 AGAAACTTCACATCAGCCTCTT 57.636 40.909 0.00 0.00 0.00 2.85
3599 4856 4.322567 AGAAACTTCACATCAGCCTCTTC 58.677 43.478 0.00 0.00 0.00 2.87
3600 4857 4.041444 AGAAACTTCACATCAGCCTCTTCT 59.959 41.667 0.00 0.00 0.00 2.85
3601 4858 4.363991 AACTTCACATCAGCCTCTTCTT 57.636 40.909 0.00 0.00 0.00 2.52
3602 4859 3.936564 ACTTCACATCAGCCTCTTCTTC 58.063 45.455 0.00 0.00 0.00 2.87
3603 4860 3.582208 ACTTCACATCAGCCTCTTCTTCT 59.418 43.478 0.00 0.00 0.00 2.85
3604 4861 3.606595 TCACATCAGCCTCTTCTTCTG 57.393 47.619 0.00 0.00 0.00 3.02
3605 4862 3.168292 TCACATCAGCCTCTTCTTCTGA 58.832 45.455 0.00 0.00 40.62 3.27
3610 4867 3.439154 TCAGCCTCTTCTTCTGACAGAT 58.561 45.455 5.87 0.00 32.48 2.90
3613 4870 2.419851 GCCTCTTCTTCTGACAGATGGG 60.420 54.545 16.08 11.14 0.00 4.00
3695 4955 3.192001 ACAAGTGCCAAATGACATAGCAG 59.808 43.478 7.71 1.38 33.37 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.001068 GGAGCCGCTAAACCCTAGATC 59.999 57.143 0.00 0.00 0.00 2.75
1 2 1.049402 GGAGCCGCTAAACCCTAGAT 58.951 55.000 0.00 0.00 0.00 1.98
2 3 1.389609 CGGAGCCGCTAAACCCTAGA 61.390 60.000 0.00 0.00 0.00 2.43
3 4 1.067582 CGGAGCCGCTAAACCCTAG 59.932 63.158 0.00 0.00 0.00 3.02
4 5 0.757935 ATCGGAGCCGCTAAACCCTA 60.758 55.000 3.59 0.00 39.59 3.53
5 6 1.623542 AATCGGAGCCGCTAAACCCT 61.624 55.000 3.59 0.00 39.59 4.34
6 7 1.153229 AATCGGAGCCGCTAAACCC 60.153 57.895 3.59 0.00 39.59 4.11
7 8 1.436983 CCAATCGGAGCCGCTAAACC 61.437 60.000 3.59 0.00 39.59 3.27
8 9 1.436983 CCCAATCGGAGCCGCTAAAC 61.437 60.000 3.59 0.00 39.59 2.01
9 10 1.153249 CCCAATCGGAGCCGCTAAA 60.153 57.895 3.59 0.00 39.59 1.85
10 11 2.504032 CCCAATCGGAGCCGCTAA 59.496 61.111 3.59 0.00 39.59 3.09
11 12 3.546543 CCCCAATCGGAGCCGCTA 61.547 66.667 3.59 0.00 39.59 4.26
14 15 4.918201 GAGCCCCAATCGGAGCCG 62.918 72.222 1.74 1.74 41.35 5.52
15 16 4.918201 CGAGCCCCAATCGGAGCC 62.918 72.222 0.00 0.00 36.54 4.70
16 17 3.682292 AACGAGCCCCAATCGGAGC 62.682 63.158 0.00 0.00 44.36 4.70
17 18 1.521681 GAACGAGCCCCAATCGGAG 60.522 63.158 0.00 0.00 44.36 4.63
18 19 2.582436 GAACGAGCCCCAATCGGA 59.418 61.111 0.00 0.00 44.36 4.55
19 20 2.513897 GGAACGAGCCCCAATCGG 60.514 66.667 0.00 0.00 44.36 4.18
20 21 2.513897 GGGAACGAGCCCCAATCG 60.514 66.667 6.13 0.00 42.62 3.34
27 28 0.250513 ATCAACAGAGGGAACGAGCC 59.749 55.000 0.00 0.00 0.00 4.70
28 29 2.100605 AATCAACAGAGGGAACGAGC 57.899 50.000 0.00 0.00 0.00 5.03
29 30 2.744202 CCAAATCAACAGAGGGAACGAG 59.256 50.000 0.00 0.00 0.00 4.18
30 31 2.778299 CCAAATCAACAGAGGGAACGA 58.222 47.619 0.00 0.00 0.00 3.85
31 32 1.200020 GCCAAATCAACAGAGGGAACG 59.800 52.381 0.00 0.00 0.00 3.95
32 33 1.200020 CGCCAAATCAACAGAGGGAAC 59.800 52.381 0.00 0.00 0.00 3.62
33 34 1.202879 ACGCCAAATCAACAGAGGGAA 60.203 47.619 0.00 0.00 0.00 3.97
34 35 0.400213 ACGCCAAATCAACAGAGGGA 59.600 50.000 0.00 0.00 0.00 4.20
35 36 0.804989 GACGCCAAATCAACAGAGGG 59.195 55.000 0.00 0.00 0.00 4.30
36 37 0.804989 GGACGCCAAATCAACAGAGG 59.195 55.000 0.00 0.00 0.00 3.69
37 38 1.734465 GAGGACGCCAAATCAACAGAG 59.266 52.381 0.00 0.00 0.00 3.35
38 39 1.808411 GAGGACGCCAAATCAACAGA 58.192 50.000 0.00 0.00 0.00 3.41
39 40 0.443869 CGAGGACGCCAAATCAACAG 59.556 55.000 0.00 0.00 0.00 3.16
40 41 0.250124 ACGAGGACGCCAAATCAACA 60.250 50.000 0.00 0.00 43.96 3.33
41 42 0.442699 GACGAGGACGCCAAATCAAC 59.557 55.000 0.00 0.00 43.96 3.18
42 43 0.672401 GGACGAGGACGCCAAATCAA 60.672 55.000 0.00 0.00 43.96 2.57
43 44 1.079405 GGACGAGGACGCCAAATCA 60.079 57.895 0.00 0.00 43.96 2.57
44 45 2.165301 CGGACGAGGACGCCAAATC 61.165 63.158 0.00 0.00 43.96 2.17
45 46 2.125673 CGGACGAGGACGCCAAAT 60.126 61.111 0.00 0.00 43.96 2.32
46 47 2.162338 ATTCGGACGAGGACGCCAAA 62.162 55.000 0.00 0.00 43.96 3.28
47 48 2.162338 AATTCGGACGAGGACGCCAA 62.162 55.000 0.00 0.00 43.96 4.52
48 49 2.552585 GAATTCGGACGAGGACGCCA 62.553 60.000 0.00 0.00 43.96 5.69
49 50 1.877165 GAATTCGGACGAGGACGCC 60.877 63.158 0.00 0.00 43.96 5.68
50 51 1.153901 TGAATTCGGACGAGGACGC 60.154 57.895 0.04 0.00 43.96 5.19
51 52 1.132199 CGTGAATTCGGACGAGGACG 61.132 60.000 11.74 4.66 45.75 4.79
52 53 2.650163 CGTGAATTCGGACGAGGAC 58.350 57.895 11.74 0.00 37.81 3.85
61 62 3.864686 CAGCCCGCCGTGAATTCG 61.865 66.667 0.04 0.00 0.00 3.34
62 63 3.508840 CCAGCCCGCCGTGAATTC 61.509 66.667 0.00 0.00 0.00 2.17
77 78 2.935481 CCCTCCTGCTGGTTCCCA 60.935 66.667 9.73 0.00 34.23 4.37
78 79 3.732849 CCCCTCCTGCTGGTTCCC 61.733 72.222 9.73 0.00 34.23 3.97
79 80 4.432741 GCCCCTCCTGCTGGTTCC 62.433 72.222 9.73 0.00 34.23 3.62
80 81 4.785453 CGCCCCTCCTGCTGGTTC 62.785 72.222 9.73 0.00 34.23 3.62
90 91 4.864334 CATGACCAGCCGCCCCTC 62.864 72.222 0.00 0.00 0.00 4.30
93 94 4.740822 AACCATGACCAGCCGCCC 62.741 66.667 0.00 0.00 0.00 6.13
94 95 2.676471 AAACCATGACCAGCCGCC 60.676 61.111 0.00 0.00 0.00 6.13
95 96 2.568090 CAAACCATGACCAGCCGC 59.432 61.111 0.00 0.00 0.00 6.53
96 97 1.178534 AACCAAACCATGACCAGCCG 61.179 55.000 0.00 0.00 0.00 5.52
97 98 0.603065 GAACCAAACCATGACCAGCC 59.397 55.000 0.00 0.00 0.00 4.85
98 99 0.603065 GGAACCAAACCATGACCAGC 59.397 55.000 0.00 0.00 0.00 4.85
113 114 3.833442 CCGTCTAATTGCAAAAGGGAAC 58.167 45.455 1.71 0.00 0.00 3.62
114 115 2.230266 GCCGTCTAATTGCAAAAGGGAA 59.770 45.455 1.71 0.00 0.00 3.97
115 116 1.816224 GCCGTCTAATTGCAAAAGGGA 59.184 47.619 1.71 0.00 0.00 4.20
116 117 1.467374 CGCCGTCTAATTGCAAAAGGG 60.467 52.381 1.71 6.08 0.00 3.95
117 118 1.895051 CGCCGTCTAATTGCAAAAGG 58.105 50.000 1.71 0.00 0.00 3.11
118 119 1.259316 GCGCCGTCTAATTGCAAAAG 58.741 50.000 1.71 4.38 0.00 2.27
119 120 0.453615 CGCGCCGTCTAATTGCAAAA 60.454 50.000 1.71 0.00 0.00 2.44
120 121 1.133664 CGCGCCGTCTAATTGCAAA 59.866 52.632 1.71 0.00 0.00 3.68
121 122 2.781957 CGCGCCGTCTAATTGCAA 59.218 55.556 0.00 0.00 0.00 4.08
122 123 3.860125 GCGCGCCGTCTAATTGCA 61.860 61.111 23.24 0.00 0.00 4.08
123 124 3.564027 AGCGCGCCGTCTAATTGC 61.564 61.111 30.33 0.00 0.00 3.56
124 125 2.082437 CTCAGCGCGCCGTCTAATTG 62.082 60.000 30.33 17.16 0.00 2.32
125 126 1.878522 CTCAGCGCGCCGTCTAATT 60.879 57.895 30.33 2.66 0.00 1.40
126 127 2.278857 CTCAGCGCGCCGTCTAAT 60.279 61.111 30.33 3.60 0.00 1.73
127 128 3.744719 ACTCAGCGCGCCGTCTAA 61.745 61.111 30.33 5.97 0.00 2.10
128 129 4.476410 CACTCAGCGCGCCGTCTA 62.476 66.667 30.33 7.92 0.00 2.59
138 139 1.575576 CTCCAGCACTTGCACTCAGC 61.576 60.000 3.62 0.00 45.16 4.26
139 140 1.575576 GCTCCAGCACTTGCACTCAG 61.576 60.000 3.62 0.00 45.16 3.35
140 141 1.598962 GCTCCAGCACTTGCACTCA 60.599 57.895 3.62 0.00 45.16 3.41
141 142 0.888285 AAGCTCCAGCACTTGCACTC 60.888 55.000 3.62 0.00 45.16 3.51
142 143 1.150081 AAGCTCCAGCACTTGCACT 59.850 52.632 3.62 0.00 45.16 4.40
143 144 1.168407 TCAAGCTCCAGCACTTGCAC 61.168 55.000 3.62 0.00 42.41 4.57
144 145 0.251033 ATCAAGCTCCAGCACTTGCA 60.251 50.000 3.62 0.00 42.41 4.08
145 146 0.170561 CATCAAGCTCCAGCACTTGC 59.829 55.000 0.48 0.00 42.41 4.01
146 147 1.199327 CACATCAAGCTCCAGCACTTG 59.801 52.381 0.48 0.00 45.16 3.16
147 148 1.072806 TCACATCAAGCTCCAGCACTT 59.927 47.619 0.48 0.00 45.16 3.16
148 149 0.689055 TCACATCAAGCTCCAGCACT 59.311 50.000 0.48 0.00 45.16 4.40
154 155 3.002042 CGATCAACATCACATCAAGCTCC 59.998 47.826 0.00 0.00 0.00 4.70
183 184 1.873591 GCGAACCTGACACTCAAATGT 59.126 47.619 0.00 0.00 34.78 2.71
184 185 1.872952 TGCGAACCTGACACTCAAATG 59.127 47.619 0.00 0.00 0.00 2.32
185 186 1.873591 GTGCGAACCTGACACTCAAAT 59.126 47.619 0.00 0.00 0.00 2.32
204 206 0.393077 CACTCCCAACTGAACCGAGT 59.607 55.000 0.00 0.00 34.16 4.18
264 266 4.479993 GGATGGAGCAGCGGCACT 62.480 66.667 12.44 0.00 44.61 4.40
265 267 4.479993 AGGATGGAGCAGCGGCAC 62.480 66.667 12.44 4.33 44.61 5.01
299 303 2.515996 TAACGCTACACAGGCCAGCC 62.516 60.000 5.01 0.00 31.43 4.85
306 310 0.892755 TGGGGAGTAACGCTACACAG 59.107 55.000 0.00 0.00 36.28 3.66
314 318 0.389948 GCTGTGACTGGGGAGTAACG 60.390 60.000 0.00 0.00 0.00 3.18
317 321 1.203187 AGAAGCTGTGACTGGGGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
322 326 4.709840 CCAGAAGCTGTGACTGGG 57.290 61.111 16.63 4.27 44.96 4.45
324 328 1.793258 CTCACCAGAAGCTGTGACTG 58.207 55.000 0.69 2.72 0.00 3.51
329 333 2.164865 CTCCGCTCACCAGAAGCTGT 62.165 60.000 0.00 0.00 0.00 4.40
331 335 2.977178 CTCCGCTCACCAGAAGCT 59.023 61.111 0.00 0.00 0.00 3.74
332 336 2.817396 GCTCCGCTCACCAGAAGC 60.817 66.667 0.00 0.00 0.00 3.86
334 338 3.303135 ACGCTCCGCTCACCAGAA 61.303 61.111 0.00 0.00 0.00 3.02
335 339 4.056125 CACGCTCCGCTCACCAGA 62.056 66.667 0.00 0.00 0.00 3.86
346 350 4.357947 TCCACAGTCCGCACGCTC 62.358 66.667 0.00 0.00 0.00 5.03
347 351 4.363990 CTCCACAGTCCGCACGCT 62.364 66.667 0.00 0.00 0.00 5.07
348 352 4.357947 TCTCCACAGTCCGCACGC 62.358 66.667 0.00 0.00 0.00 5.34
349 353 2.126307 CTCTCCACAGTCCGCACG 60.126 66.667 0.00 0.00 0.00 5.34
351 355 0.538746 TACACTCTCCACAGTCCGCA 60.539 55.000 0.00 0.00 0.00 5.69
353 357 1.200252 CAGTACACTCTCCACAGTCCG 59.800 57.143 0.00 0.00 0.00 4.79
354 358 1.067495 GCAGTACACTCTCCACAGTCC 60.067 57.143 0.00 0.00 0.00 3.85
356 360 1.615883 CAGCAGTACACTCTCCACAGT 59.384 52.381 0.00 0.00 0.00 3.55
357 361 1.671261 GCAGCAGTACACTCTCCACAG 60.671 57.143 0.00 0.00 0.00 3.66
376 380 0.038343 TGCCGCCTTCAATTGAAAGC 60.038 50.000 25.47 25.47 37.94 3.51
377 381 2.660189 ATGCCGCCTTCAATTGAAAG 57.340 45.000 20.82 16.21 33.07 2.62
380 384 1.473677 CAGAATGCCGCCTTCAATTGA 59.526 47.619 3.38 3.38 0.00 2.57
398 402 2.015736 AGTAGAATCCAACTGCGCAG 57.984 50.000 34.89 34.89 0.00 5.18
401 405 4.151335 GCATCATAGTAGAATCCAACTGCG 59.849 45.833 0.00 0.00 0.00 5.18
460 464 1.522668 TTCGAACATTGGGCTGAGTG 58.477 50.000 0.00 0.00 0.00 3.51
585 620 1.098050 GCGGAAATGCAGAACCAGAT 58.902 50.000 0.00 0.00 34.15 2.90
620 655 4.753516 TTCACAGACTTTGACTCCAGAA 57.246 40.909 0.00 0.00 0.00 3.02
629 664 8.344831 TGAACAACTATTCATTCACAGACTTTG 58.655 33.333 0.00 0.00 33.62 2.77
636 671 6.712095 AGAAGCTGAACAACTATTCATTCACA 59.288 34.615 0.00 0.00 37.93 3.58
671 706 1.342496 TCAATCAGCTAGCCTCCATCG 59.658 52.381 12.13 0.00 0.00 3.84
672 707 2.549778 GGTCAATCAGCTAGCCTCCATC 60.550 54.545 12.13 0.00 0.00 3.51
693 728 1.888215 TGCAGAAGAGAAGGCAACAG 58.112 50.000 0.00 0.00 41.41 3.16
725 760 0.813821 GGGGAACGAAGTAGCTACGT 59.186 55.000 17.99 15.29 45.00 3.57
813 884 8.814038 AAGCTACCAGATAAAACTTGATTCAT 57.186 30.769 0.00 0.00 0.00 2.57
856 927 6.959639 AACATGGTTAGATTGTCTTGTTGT 57.040 33.333 0.00 0.00 0.00 3.32
900 971 6.936900 AGGGTACAGCAAATATGATATCACAC 59.063 38.462 7.78 0.00 0.00 3.82
911 982 5.499004 AAGAGTCAAGGGTACAGCAAATA 57.501 39.130 0.00 0.00 0.00 1.40
1153 1225 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
1154 1226 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
1155 1227 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1156 1228 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1157 1229 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1158 1230 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
1159 1231 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
1160 1232 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
1161 1233 7.979444 AATAACATCTTACATTATGGGACGG 57.021 36.000 0.00 0.00 0.00 4.79
1205 1277 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1206 1278 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1207 1279 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1208 1280 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1209 1281 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1211 1283 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1212 1284 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1213 1285 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1214 1286 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1215 1287 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1216 1288 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1217 1289 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1218 1290 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1219 1291 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1220 1292 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1221 1293 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
1222 1294 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1223 1295 2.378378 ATTACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1224 1296 4.280425 CCTTAATTACTACTCCCTCCGTCC 59.720 50.000 0.00 0.00 0.00 4.79
1225 1297 4.261952 GCCTTAATTACTACTCCCTCCGTC 60.262 50.000 0.00 0.00 0.00 4.79
1226 1298 3.640498 GCCTTAATTACTACTCCCTCCGT 59.360 47.826 0.00 0.00 0.00 4.69
1227 1299 3.640029 TGCCTTAATTACTACTCCCTCCG 59.360 47.826 0.00 0.00 0.00 4.63
1228 1300 5.827326 ATGCCTTAATTACTACTCCCTCC 57.173 43.478 0.00 0.00 0.00 4.30
1229 1301 7.778185 TCTATGCCTTAATTACTACTCCCTC 57.222 40.000 0.00 0.00 0.00 4.30
1230 1302 7.567622 TGTTCTATGCCTTAATTACTACTCCCT 59.432 37.037 0.00 0.00 0.00 4.20
1231 1303 7.732996 TGTTCTATGCCTTAATTACTACTCCC 58.267 38.462 0.00 0.00 0.00 4.30
1232 1304 9.780186 AATGTTCTATGCCTTAATTACTACTCC 57.220 33.333 0.00 0.00 0.00 3.85
1592 1667 6.287589 TGGTTGTTTCAACTGTACCATTTT 57.712 33.333 11.48 0.00 33.73 1.82
1788 1864 1.474077 GGGCATCATCCACTGAAACAC 59.526 52.381 0.00 0.00 37.44 3.32
1859 1935 3.432051 GATGGCGGTGTCCCTCTCG 62.432 68.421 0.00 0.00 0.00 4.04
1916 1992 1.134159 GCCATGTCTCTCTCAGCCATT 60.134 52.381 0.00 0.00 0.00 3.16
2006 2082 0.970640 TACGGGCTAGTTCAAGTGCA 59.029 50.000 0.00 0.00 0.00 4.57
2045 2121 0.168128 GGTTGAATCCGTTTCCGCTG 59.832 55.000 0.00 0.00 33.04 5.18
2047 2123 1.238625 TGGGTTGAATCCGTTTCCGC 61.239 55.000 0.00 0.00 33.04 5.54
2051 2127 2.308866 AGATCCTGGGTTGAATCCGTTT 59.691 45.455 0.00 0.00 0.00 3.60
2053 2129 1.486726 GAGATCCTGGGTTGAATCCGT 59.513 52.381 0.00 0.00 0.00 4.69
2084 2160 1.202604 TCGTGGTGGTGGAAGTTCTTC 60.203 52.381 2.25 4.19 0.00 2.87
2129 2205 2.697147 AATCGGCCAGTTGCAGTGGT 62.697 55.000 16.35 0.00 40.85 4.16
2144 2220 3.667360 TGCATGGTCATATGGAGAATCG 58.333 45.455 2.13 0.00 34.37 3.34
2165 2241 3.879295 CGTCTGATATGTGCATTTCCCTT 59.121 43.478 0.00 0.00 0.00 3.95
2195 2271 1.002134 CACCGGGGCTGTTGAGATT 60.002 57.895 6.32 0.00 0.00 2.40
2215 2291 0.038526 CTTTGCCTTTCCAGCAGCAG 60.039 55.000 0.00 0.00 42.17 4.24
2330 2406 1.676968 CCCGACACCAGACATTCCA 59.323 57.895 0.00 0.00 0.00 3.53
2388 2464 3.233355 CAAGGTCTTGGTCCTTCCG 57.767 57.895 2.94 0.00 42.57 4.30
2399 2475 1.763770 CTGGTTCAGGCCAAGGTCT 59.236 57.895 5.01 0.00 38.18 3.85
2477 2553 1.675641 GCCCCACTTGTAGCACTGG 60.676 63.158 0.00 0.00 0.00 4.00
2736 2812 6.073765 GCATACACCTCCTTACATATTGAACG 60.074 42.308 0.00 0.00 0.00 3.95
2743 2819 2.036733 GCCGCATACACCTCCTTACATA 59.963 50.000 0.00 0.00 0.00 2.29
2755 2831 0.906066 TAGGACCTTTGCCGCATACA 59.094 50.000 0.00 0.00 0.00 2.29
2782 2858 2.035626 CCGTCCAACCCCAGCAAT 59.964 61.111 0.00 0.00 0.00 3.56
2801 2877 6.481434 ACAGAGATGATGATGAGTTGATGA 57.519 37.500 0.00 0.00 0.00 2.92
2802 2878 8.713271 CATTACAGAGATGATGATGAGTTGATG 58.287 37.037 0.00 0.00 0.00 3.07
2803 2879 8.430431 ACATTACAGAGATGATGATGAGTTGAT 58.570 33.333 0.00 0.00 0.00 2.57
2804 2880 7.789026 ACATTACAGAGATGATGATGAGTTGA 58.211 34.615 0.00 0.00 0.00 3.18
2805 2881 7.709613 TGACATTACAGAGATGATGATGAGTTG 59.290 37.037 0.00 0.00 0.00 3.16
2806 2882 7.789026 TGACATTACAGAGATGATGATGAGTT 58.211 34.615 0.00 0.00 0.00 3.01
2807 2883 7.357429 TGACATTACAGAGATGATGATGAGT 57.643 36.000 0.00 0.00 0.00 3.41
2808 2884 8.713271 CAATGACATTACAGAGATGATGATGAG 58.287 37.037 0.00 0.00 0.00 2.90
2842 2918 4.442192 GGACCTACACAGAATTCTAGCCTG 60.442 50.000 7.86 4.11 0.00 4.85
2869 2945 1.299976 CTCGGGGTTCAGAAAGGGG 59.700 63.158 0.00 0.00 0.00 4.79
2888 2964 4.680237 TTCCACTGTCCAGCGCGG 62.680 66.667 8.83 11.37 0.00 6.46
2919 3000 0.751452 GAGGACGAATACCTGGGGTC 59.249 60.000 0.00 0.00 37.93 4.46
2936 3017 5.744345 AGTCAAAACTATACAGCGAATCGAG 59.256 40.000 6.91 0.00 32.59 4.04
2976 3057 5.575157 TGACAAAGGAATAATGGCCTACAA 58.425 37.500 3.32 0.00 33.20 2.41
2977 3058 5.186256 TGACAAAGGAATAATGGCCTACA 57.814 39.130 3.32 0.00 33.20 2.74
2984 3065 7.099266 TGTAAGCCATGACAAAGGAATAATG 57.901 36.000 0.00 0.00 0.00 1.90
2985 3066 7.902920 ATGTAAGCCATGACAAAGGAATAAT 57.097 32.000 0.00 0.00 30.69 1.28
2988 3069 5.716228 TGAATGTAAGCCATGACAAAGGAAT 59.284 36.000 0.00 0.00 32.82 3.01
2991 3072 5.587388 ATGAATGTAAGCCATGACAAAGG 57.413 39.130 0.00 0.00 32.82 3.11
3001 3082 5.391736 GCAGCATCTGATATGAATGTAAGCC 60.392 44.000 6.29 0.00 32.44 4.35
3003 3084 6.796705 TGCAGCATCTGATATGAATGTAAG 57.203 37.500 0.00 0.00 32.44 2.34
3006 3087 6.374613 CCTAATGCAGCATCTGATATGAATGT 59.625 38.462 8.77 0.00 32.44 2.71
3007 3088 6.598064 TCCTAATGCAGCATCTGATATGAATG 59.402 38.462 8.77 0.00 32.44 2.67
3008 3089 6.718294 TCCTAATGCAGCATCTGATATGAAT 58.282 36.000 8.77 0.00 32.44 2.57
3009 3090 6.117975 TCCTAATGCAGCATCTGATATGAA 57.882 37.500 8.77 0.00 32.44 2.57
3010 3091 5.750352 TCCTAATGCAGCATCTGATATGA 57.250 39.130 8.77 0.00 32.44 2.15
3066 3147 7.448420 TGCTGCTGCTATTATCTTCTTTCTAT 58.552 34.615 17.00 0.00 40.48 1.98
3151 3237 6.947903 TGAACGACTGCAACGTAATAATAA 57.052 33.333 16.68 0.00 43.16 1.40
3269 4512 1.941999 GCCAGGAGCATTTGAGCCAC 61.942 60.000 0.00 0.00 42.97 5.01
3285 4529 7.675962 AAGTATTATTTTACTGTTCACGCCA 57.324 32.000 0.00 0.00 32.78 5.69
3304 4548 9.816354 AGCACAACAAACATTTCTTAAAAGTAT 57.184 25.926 0.00 0.00 0.00 2.12
3314 4558 9.553418 AAATTTTACAAGCACAACAAACATTTC 57.447 25.926 0.00 0.00 0.00 2.17
3338 4582 5.240403 TCACCAATGTGATTTCGTGATGAAA 59.760 36.000 1.88 1.88 46.40 2.69
3339 4583 4.759183 TCACCAATGTGATTTCGTGATGAA 59.241 37.500 0.00 0.00 46.40 2.57
3340 4584 4.322567 TCACCAATGTGATTTCGTGATGA 58.677 39.130 0.00 0.00 46.40 2.92
3341 4585 4.683501 TCACCAATGTGATTTCGTGATG 57.316 40.909 0.00 0.00 46.40 3.07
3352 4596 0.110238 CCGCGACTTTCACCAATGTG 60.110 55.000 8.23 0.00 44.18 3.21
3353 4597 1.852067 GCCGCGACTTTCACCAATGT 61.852 55.000 8.23 0.00 0.00 2.71
3354 4598 1.154225 GCCGCGACTTTCACCAATG 60.154 57.895 8.23 0.00 0.00 2.82
3355 4599 1.169661 TTGCCGCGACTTTCACCAAT 61.170 50.000 8.23 0.00 0.00 3.16
3356 4600 1.377366 TTTGCCGCGACTTTCACCAA 61.377 50.000 8.23 0.00 0.00 3.67
3357 4601 1.377366 TTTTGCCGCGACTTTCACCA 61.377 50.000 8.23 0.00 0.00 4.17
3358 4602 0.248702 TTTTTGCCGCGACTTTCACC 60.249 50.000 8.23 0.00 0.00 4.02
3359 4603 3.243855 TTTTTGCCGCGACTTTCAC 57.756 47.368 8.23 0.00 0.00 3.18
3379 4623 3.181476 ACGCATTTTGGAGCTCTGTTTTT 60.181 39.130 14.64 0.00 0.00 1.94
3380 4624 2.362077 ACGCATTTTGGAGCTCTGTTTT 59.638 40.909 14.64 0.00 0.00 2.43
3381 4625 1.956477 ACGCATTTTGGAGCTCTGTTT 59.044 42.857 14.64 0.00 0.00 2.83
3382 4626 1.609208 ACGCATTTTGGAGCTCTGTT 58.391 45.000 14.64 0.00 0.00 3.16
3383 4627 1.609208 AACGCATTTTGGAGCTCTGT 58.391 45.000 14.64 0.00 0.00 3.41
3384 4628 2.712057 AAACGCATTTTGGAGCTCTG 57.288 45.000 14.64 4.50 0.00 3.35
3385 4629 4.846779 TTAAAACGCATTTTGGAGCTCT 57.153 36.364 14.64 0.00 38.50 4.09
3386 4630 4.742659 TGTTTAAAACGCATTTTGGAGCTC 59.257 37.500 4.71 4.71 38.50 4.09
3387 4631 4.688021 TGTTTAAAACGCATTTTGGAGCT 58.312 34.783 0.00 0.00 38.50 4.09
3388 4632 5.590104 ATGTTTAAAACGCATTTTGGAGC 57.410 34.783 0.00 0.00 38.50 4.70
3389 4633 8.119226 TGAAAATGTTTAAAACGCATTTTGGAG 58.881 29.630 22.60 0.00 46.38 3.86
3390 4634 7.974675 TGAAAATGTTTAAAACGCATTTTGGA 58.025 26.923 22.60 12.31 46.38 3.53
3391 4635 8.119226 TCTGAAAATGTTTAAAACGCATTTTGG 58.881 29.630 22.60 17.07 46.38 3.28
3392 4636 9.483062 TTCTGAAAATGTTTAAAACGCATTTTG 57.517 25.926 22.60 14.26 46.38 2.44
3462 4706 5.389778 GTGTGTATGCGAAAATTCATCACA 58.610 37.500 0.00 0.00 33.13 3.58
3464 4708 4.457257 TGGTGTGTATGCGAAAATTCATCA 59.543 37.500 0.00 0.00 0.00 3.07
3467 4711 4.837896 TTGGTGTGTATGCGAAAATTCA 57.162 36.364 0.00 0.00 0.00 2.57
3468 4712 4.979197 TGTTTGGTGTGTATGCGAAAATTC 59.021 37.500 0.00 0.00 0.00 2.17
3469 4713 4.938080 TGTTTGGTGTGTATGCGAAAATT 58.062 34.783 0.00 0.00 0.00 1.82
3470 4714 4.576216 TGTTTGGTGTGTATGCGAAAAT 57.424 36.364 0.00 0.00 0.00 1.82
3471 4715 4.576216 ATGTTTGGTGTGTATGCGAAAA 57.424 36.364 0.00 0.00 0.00 2.29
3472 4716 4.541779 GAATGTTTGGTGTGTATGCGAAA 58.458 39.130 0.00 0.00 0.00 3.46
3473 4717 3.057876 GGAATGTTTGGTGTGTATGCGAA 60.058 43.478 0.00 0.00 0.00 4.70
3474 4718 2.486203 GGAATGTTTGGTGTGTATGCGA 59.514 45.455 0.00 0.00 0.00 5.10
3475 4719 2.487762 AGGAATGTTTGGTGTGTATGCG 59.512 45.455 0.00 0.00 0.00 4.73
3479 4723 9.319143 CAAAATTTAAGGAATGTTTGGTGTGTA 57.681 29.630 0.00 0.00 30.58 2.90
3495 4739 9.565213 TGTGAAATTTTTGTGGCAAAATTTAAG 57.435 25.926 16.80 0.00 44.11 1.85
3535 4779 8.278639 TGCTCCTGGGTTAATCATAGATTAAAA 58.721 33.333 12.31 3.44 0.00 1.52
3539 4783 5.912149 TGCTCCTGGGTTAATCATAGATT 57.088 39.130 0.00 0.00 0.00 2.40
3540 4784 6.460103 AATGCTCCTGGGTTAATCATAGAT 57.540 37.500 0.00 0.00 0.00 1.98
3542 4786 6.064060 TCAAATGCTCCTGGGTTAATCATAG 58.936 40.000 0.00 0.00 0.00 2.23
3544 4788 4.870636 TCAAATGCTCCTGGGTTAATCAT 58.129 39.130 0.00 0.00 0.00 2.45
3546 4790 3.067320 GCTCAAATGCTCCTGGGTTAATC 59.933 47.826 0.00 0.00 0.00 1.75
3547 4791 3.026694 GCTCAAATGCTCCTGGGTTAAT 58.973 45.455 0.00 0.00 0.00 1.40
3555 4812 1.305623 CCCAGGCTCAAATGCTCCT 59.694 57.895 0.00 0.00 0.00 3.69
3570 4827 4.641396 CTGATGTGAAGTTTCTACACCCA 58.359 43.478 0.00 0.00 34.18 4.51
3573 4830 4.319177 AGGCTGATGTGAAGTTTCTACAC 58.681 43.478 0.00 0.00 35.45 2.90
3587 4844 3.195182 TCTGTCAGAAGAAGAGGCTGATG 59.805 47.826 0.00 0.00 40.40 3.07
3591 4848 2.500910 CCATCTGTCAGAAGAAGAGGCT 59.499 50.000 6.64 0.00 0.00 4.58
3593 4850 3.102972 TCCCATCTGTCAGAAGAAGAGG 58.897 50.000 6.64 0.00 0.00 3.69
3595 4852 5.072329 ACTTTTCCCATCTGTCAGAAGAAGA 59.928 40.000 6.64 5.40 0.00 2.87
3596 4853 5.180868 CACTTTTCCCATCTGTCAGAAGAAG 59.819 44.000 6.64 4.88 0.00 2.85
3597 4854 5.065914 CACTTTTCCCATCTGTCAGAAGAA 58.934 41.667 6.64 7.79 0.00 2.52
3598 4855 4.505566 CCACTTTTCCCATCTGTCAGAAGA 60.506 45.833 6.64 1.67 0.00 2.87
3599 4856 3.755378 CCACTTTTCCCATCTGTCAGAAG 59.245 47.826 6.64 1.90 0.00 2.85
3600 4857 3.394274 TCCACTTTTCCCATCTGTCAGAA 59.606 43.478 6.64 0.00 0.00 3.02
3601 4858 2.978978 TCCACTTTTCCCATCTGTCAGA 59.021 45.455 4.68 4.68 0.00 3.27
3602 4859 3.008375 TCTCCACTTTTCCCATCTGTCAG 59.992 47.826 0.00 0.00 0.00 3.51
3603 4860 2.978978 TCTCCACTTTTCCCATCTGTCA 59.021 45.455 0.00 0.00 0.00 3.58
3604 4861 3.703001 TCTCCACTTTTCCCATCTGTC 57.297 47.619 0.00 0.00 0.00 3.51
3605 4862 3.308688 CCATCTCCACTTTTCCCATCTGT 60.309 47.826 0.00 0.00 0.00 3.41
3610 4867 0.776810 TGCCATCTCCACTTTTCCCA 59.223 50.000 0.00 0.00 0.00 4.37
3613 4870 6.036408 GCATTATTTTGCCATCTCCACTTTTC 59.964 38.462 0.00 0.00 36.60 2.29
3695 4955 0.107831 TACAGGTTCTGTGGTGGTGC 59.892 55.000 10.46 0.00 45.01 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.