Multiple sequence alignment - TraesCS7A01G066100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G066100 chr7A 100.000 2351 0 0 1 2351 33147730 33150080 0.000000e+00 4342.0
1 TraesCS7A01G066100 chr7A 91.694 614 23 12 1395 1981 33148124 33147512 0.000000e+00 826.0
2 TraesCS7A01G066100 chr7A 95.190 395 13 2 1 395 33149512 33149124 9.230000e-174 619.0
3 TraesCS7A01G066100 chr7A 94.776 134 6 1 1854 1986 284786215 284786348 8.520000e-50 207.0
4 TraesCS7A01G066100 chr2A 91.582 1081 45 10 945 1981 703560054 703561132 0.000000e+00 1450.0
5 TraesCS7A01G066100 chr2A 94.762 420 10 4 410 823 703559644 703560057 0.000000e+00 643.0
6 TraesCS7A01G066100 chr2A 94.710 397 12 4 1 395 703560915 703560526 2.000000e-170 608.0
7 TraesCS7A01G066100 chr6A 91.354 613 29 12 1395 1985 108185614 108186224 0.000000e+00 817.0
8 TraesCS7A01G066100 chr6A 93.792 451 22 3 1 451 108186002 108185558 0.000000e+00 673.0
9 TraesCS7A01G066100 chr6A 94.194 310 17 1 1410 1718 108184243 108183934 2.730000e-129 472.0
10 TraesCS7A01G066100 chr6A 95.286 297 14 0 85 381 108183948 108184244 2.730000e-129 472.0
11 TraesCS7A01G066100 chr6A 82.937 252 21 4 1761 1990 91164449 91164700 8.520000e-50 207.0
12 TraesCS7A01G066100 chr3D 91.447 608 31 6 1395 1981 310697253 310696646 0.000000e+00 815.0
13 TraesCS7A01G066100 chr3D 95.302 447 15 4 2 448 310696866 310697306 0.000000e+00 704.0
14 TraesCS7A01G066100 chr3D 90.462 346 11 9 1657 1981 310707187 310707531 9.980000e-119 436.0
15 TraesCS7A01G066100 chr3D 92.827 237 15 2 182 418 607500524 607500290 2.240000e-90 342.0
16 TraesCS7A01G066100 chr3D 92.488 213 14 2 1396 1608 607500314 607500524 1.060000e-78 303.0
17 TraesCS7A01G066100 chr3D 97.500 40 1 0 1378 1417 310697856 310697895 4.190000e-08 69.4
18 TraesCS7A01G066100 chr6B 91.840 576 25 5 1427 1981 563804943 563804369 0.000000e+00 784.0
19 TraesCS7A01G066100 chr6B 91.840 576 25 10 1427 1981 563814244 563813670 0.000000e+00 784.0
20 TraesCS7A01G066100 chr6B 91.725 568 24 10 1435 1981 563805972 563806537 0.000000e+00 767.0
21 TraesCS7A01G066100 chr6B 94.490 363 13 2 1 363 563804588 563804943 9.490000e-154 553.0
22 TraesCS7A01G066100 chr6B 94.490 363 13 2 1 363 563813889 563814244 9.490000e-154 553.0
23 TraesCS7A01G066100 chr6B 94.930 355 12 1 1 355 563806320 563805972 3.410000e-153 551.0
24 TraesCS7A01G066100 chr6B 87.218 399 28 4 1611 1986 535371817 535372215 1.290000e-117 433.0
25 TraesCS7A01G066100 chr6B 91.061 179 13 3 1 179 535371992 535371817 3.020000e-59 239.0
26 TraesCS7A01G066100 chr6B 99.237 131 1 0 820 950 646953224 646953094 1.090000e-58 237.0
27 TraesCS7A01G066100 chr6B 85.841 226 11 3 1777 1981 99869330 99869105 1.090000e-53 220.0
28 TraesCS7A01G066100 chr4D 94.878 410 17 2 963 1368 6643311 6643720 2.550000e-179 638.0
29 TraesCS7A01G066100 chr4D 84.880 291 18 14 537 823 6643019 6643287 1.070000e-68 270.0
30 TraesCS7A01G066100 chr3A 97.879 330 3 1 494 823 533131439 533131114 3.390000e-158 568.0
31 TraesCS7A01G066100 chr3A 96.059 203 7 1 945 1146 533131117 533130915 1.740000e-86 329.0
32 TraesCS7A01G066100 chr3A 95.588 136 5 1 816 950 38671245 38671380 1.410000e-52 217.0
33 TraesCS7A01G066100 chr3A 83.884 242 16 5 1768 1987 681696543 681696303 2.370000e-50 209.0
34 TraesCS7A01G066100 chr4A 90.271 442 21 4 945 1368 596771081 596770644 2.040000e-155 558.0
35 TraesCS7A01G066100 chr4A 91.275 149 13 0 661 809 596771238 596771090 1.100000e-48 204.0
36 TraesCS7A01G066100 chr4A 82.927 164 17 6 2188 2348 692920871 692921026 1.130000e-28 137.0
37 TraesCS7A01G066100 chr4A 89.157 83 5 2 2144 2226 692851549 692851627 1.490000e-17 100.0
38 TraesCS7A01G066100 chr4A 80.435 138 16 9 2218 2348 692863844 692863977 6.920000e-16 95.3
39 TraesCS7A01G066100 chr4B 86.824 425 26 13 968 1368 11905126 11905544 4.610000e-122 448.0
40 TraesCS7A01G066100 chr4B 81.543 363 39 17 456 806 11904733 11905079 8.280000e-70 274.0
41 TraesCS7A01G066100 chr4B 94.964 139 6 1 820 957 210282884 210282746 1.410000e-52 217.0
42 TraesCS7A01G066100 chr7B 86.166 253 14 4 1750 1981 96800780 96800528 1.080000e-63 254.0
43 TraesCS7A01G066100 chr7B 85.650 223 14 14 1777 1982 96802408 96802629 3.930000e-53 219.0
44 TraesCS7A01G066100 chr5B 99.219 128 1 0 820 947 491032808 491032935 5.050000e-57 231.0
45 TraesCS7A01G066100 chr5B 98.438 128 2 0 820 947 246562472 246562599 2.350000e-55 226.0
46 TraesCS7A01G066100 chr5B 95.385 130 5 1 1854 1982 614979918 614979789 3.060000e-49 206.0
47 TraesCS7A01G066100 chr5B 93.431 137 8 1 1854 1989 6592348 6592212 3.960000e-48 202.0
48 TraesCS7A01G066100 chr2B 97.692 130 3 0 817 946 171995529 171995400 8.460000e-55 224.0
49 TraesCS7A01G066100 chr2B 95.105 143 5 2 805 946 590923801 590923660 8.460000e-55 224.0
50 TraesCS7A01G066100 chr5A 94.366 142 7 1 814 954 81476819 81476678 1.410000e-52 217.0
51 TraesCS7A01G066100 chr5A 91.558 154 9 3 797 946 552521521 552521368 2.370000e-50 209.0
52 TraesCS7A01G066100 chr1A 94.161 137 6 2 1855 1990 59211862 59211997 8.520000e-50 207.0
53 TraesCS7A01G066100 chr1A 80.723 166 32 0 1017 1182 391941338 391941173 1.900000e-26 130.0
54 TraesCS7A01G066100 chr7D 83.069 189 14 8 2177 2348 32915808 32915995 3.130000e-34 156.0
55 TraesCS7A01G066100 chr1B 80.723 166 32 0 1017 1182 422346724 422346559 1.900000e-26 130.0
56 TraesCS7A01G066100 chr1D 79.518 166 34 0 1017 1182 311750202 311750037 4.100000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G066100 chr7A 33147730 33150080 2350 False 4342.0 4342 100.0000 1 2351 1 chr7A.!!$F1 2350
1 TraesCS7A01G066100 chr7A 33147512 33149512 2000 True 722.5 826 93.4420 1 1981 2 chr7A.!!$R1 1980
2 TraesCS7A01G066100 chr2A 703559644 703561132 1488 False 1046.5 1450 93.1720 410 1981 2 chr2A.!!$F1 1571
3 TraesCS7A01G066100 chr6A 108183948 108186224 2276 False 644.5 817 93.3200 85 1985 2 chr6A.!!$F2 1900
4 TraesCS7A01G066100 chr6A 108183934 108186002 2068 True 572.5 673 93.9930 1 1718 2 chr6A.!!$R1 1717
5 TraesCS7A01G066100 chr3D 310696646 310697253 607 True 815.0 815 91.4470 1395 1981 1 chr3D.!!$R1 586
6 TraesCS7A01G066100 chr3D 310696866 310697895 1029 False 386.7 704 96.4010 2 1417 2 chr3D.!!$F3 1415
7 TraesCS7A01G066100 chr6B 563813670 563814244 574 True 784.0 784 91.8400 1427 1981 1 chr6B.!!$R3 554
8 TraesCS7A01G066100 chr6B 563804369 563806320 1951 True 667.5 784 93.3850 1 1981 2 chr6B.!!$R5 1980
9 TraesCS7A01G066100 chr6B 563804588 563806537 1949 False 660.0 767 93.1075 1 1981 2 chr6B.!!$F3 1980
10 TraesCS7A01G066100 chr4D 6643019 6643720 701 False 454.0 638 89.8790 537 1368 2 chr4D.!!$F1 831
11 TraesCS7A01G066100 chr3A 533130915 533131439 524 True 448.5 568 96.9690 494 1146 2 chr3A.!!$R2 652
12 TraesCS7A01G066100 chr4A 596770644 596771238 594 True 381.0 558 90.7730 661 1368 2 chr4A.!!$R1 707
13 TraesCS7A01G066100 chr4B 11904733 11905544 811 False 361.0 448 84.1835 456 1368 2 chr4B.!!$F1 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 1180 1.026182 TCGATGTACGTAGTGGCCGT 61.026 55.0 0.0 0.0 45.73 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 5138 0.032117 ATGGTCTCCTGGTCGGATGA 60.032 55.0 0.0 0.0 42.12 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 2.420890 GCTCCAGCTCCATCTCCG 59.579 66.667 0.00 0.00 38.21 4.63
248 249 4.320456 CTGGGCGTGCTCACCAGT 62.320 66.667 14.94 0.00 45.21 4.00
443 1180 1.026182 TCGATGTACGTAGTGGCCGT 61.026 55.000 0.00 0.00 45.73 5.68
492 1230 6.494491 TGCCTAGTTACTTTACTACTCCAACA 59.506 38.462 0.00 0.00 0.00 3.33
655 1794 2.486592 GTGGTTATTGTACGGCTTTGCT 59.513 45.455 0.00 0.00 0.00 3.91
664 1808 1.840737 ACGGCTTTGCTCTCTCTCTA 58.159 50.000 0.00 0.00 0.00 2.43
848 2471 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
864 2487 8.467402 ACTTGTCTTGAATTTGTCTAGATACG 57.533 34.615 0.00 0.00 39.77 3.06
885 2508 6.989155 ACGGATGTATCTAGACCCATTTTA 57.011 37.500 0.00 0.00 0.00 1.52
887 2510 6.553852 ACGGATGTATCTAGACCCATTTTAGT 59.446 38.462 0.00 0.00 0.00 2.24
888 2511 6.868864 CGGATGTATCTAGACCCATTTTAGTG 59.131 42.308 0.00 0.00 0.00 2.74
897 2520 6.176014 AGACCCATTTTAGTGCTAGATACC 57.824 41.667 0.00 0.00 0.00 2.73
900 2523 5.905913 ACCCATTTTAGTGCTAGATACCTCT 59.094 40.000 0.00 0.00 35.39 3.69
1103 2984 3.896133 GCGCGACCCCATCTACGA 61.896 66.667 12.10 0.00 0.00 3.43
1132 3093 2.433145 CCATCACGTCGCTGCAGT 60.433 61.111 16.64 0.00 0.00 4.40
1275 3306 4.263572 CCGACCAAGGCCACACCA 62.264 66.667 5.01 0.00 43.14 4.17
1441 4957 7.040755 CCTCGTATCTACTTGTGATTCAGAGAT 60.041 40.741 4.47 0.00 0.00 2.75
1444 4960 8.994170 CGTATCTACTTGTGATTCAGAGATAGA 58.006 37.037 7.92 7.92 31.26 1.98
1551 5069 1.830587 TTGGAGACGCTGGTGAGCAT 61.831 55.000 0.00 0.00 46.62 3.79
1618 5138 1.182667 TGTCGATGTGGAGGACGAAT 58.817 50.000 0.00 0.00 36.57 3.34
1620 5140 1.134367 GTCGATGTGGAGGACGAATCA 59.866 52.381 0.00 0.00 36.57 2.57
1701 5221 1.900351 CGTGGAGATGGAGCTGGAA 59.100 57.895 0.00 0.00 0.00 3.53
1709 5235 0.252881 ATGGAGCTGGAACTGAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
1788 5314 6.214412 AGAATTAATTCAGGTGGAGAGAGTGT 59.786 38.462 26.02 1.13 39.23 3.55
1857 5386 4.704833 CCGGTCCAGCCACCTGTG 62.705 72.222 0.00 0.00 37.38 3.66
1858 5387 3.625897 CGGTCCAGCCACCTGTGA 61.626 66.667 0.00 0.00 37.38 3.58
2004 5553 5.907866 AAAAAGAAGACCGAGGAACAAAA 57.092 34.783 0.00 0.00 0.00 2.44
2005 5554 5.907866 AAAAGAAGACCGAGGAACAAAAA 57.092 34.783 0.00 0.00 0.00 1.94
2006 5555 6.465439 AAAAGAAGACCGAGGAACAAAAAT 57.535 33.333 0.00 0.00 0.00 1.82
2007 5556 5.690997 AAGAAGACCGAGGAACAAAAATC 57.309 39.130 0.00 0.00 0.00 2.17
2008 5557 4.714632 AGAAGACCGAGGAACAAAAATCA 58.285 39.130 0.00 0.00 0.00 2.57
2009 5558 5.130350 AGAAGACCGAGGAACAAAAATCAA 58.870 37.500 0.00 0.00 0.00 2.57
2010 5559 5.239525 AGAAGACCGAGGAACAAAAATCAAG 59.760 40.000 0.00 0.00 0.00 3.02
2011 5560 3.821033 AGACCGAGGAACAAAAATCAAGG 59.179 43.478 0.00 0.00 0.00 3.61
2012 5561 2.296190 ACCGAGGAACAAAAATCAAGGC 59.704 45.455 0.00 0.00 0.00 4.35
2013 5562 2.295909 CCGAGGAACAAAAATCAAGGCA 59.704 45.455 0.00 0.00 0.00 4.75
2014 5563 3.243704 CCGAGGAACAAAAATCAAGGCAA 60.244 43.478 0.00 0.00 0.00 4.52
2015 5564 3.983344 CGAGGAACAAAAATCAAGGCAAG 59.017 43.478 0.00 0.00 0.00 4.01
2016 5565 4.261572 CGAGGAACAAAAATCAAGGCAAGA 60.262 41.667 0.00 0.00 0.00 3.02
2017 5566 5.600696 GAGGAACAAAAATCAAGGCAAGAA 58.399 37.500 0.00 0.00 0.00 2.52
2018 5567 5.359756 AGGAACAAAAATCAAGGCAAGAAC 58.640 37.500 0.00 0.00 0.00 3.01
2019 5568 5.104982 AGGAACAAAAATCAAGGCAAGAACA 60.105 36.000 0.00 0.00 0.00 3.18
2020 5569 5.006649 GGAACAAAAATCAAGGCAAGAACAC 59.993 40.000 0.00 0.00 0.00 3.32
2021 5570 4.111916 ACAAAAATCAAGGCAAGAACACG 58.888 39.130 0.00 0.00 0.00 4.49
2022 5571 4.142271 ACAAAAATCAAGGCAAGAACACGA 60.142 37.500 0.00 0.00 0.00 4.35
2023 5572 3.904136 AAATCAAGGCAAGAACACGAG 57.096 42.857 0.00 0.00 0.00 4.18
2024 5573 2.839486 ATCAAGGCAAGAACACGAGA 57.161 45.000 0.00 0.00 0.00 4.04
2025 5574 2.839486 TCAAGGCAAGAACACGAGAT 57.161 45.000 0.00 0.00 0.00 2.75
2026 5575 2.416747 TCAAGGCAAGAACACGAGATG 58.583 47.619 0.00 0.00 0.00 2.90
2027 5576 1.135859 CAAGGCAAGAACACGAGATGC 60.136 52.381 0.00 0.00 36.31 3.91
2028 5577 0.035317 AGGCAAGAACACGAGATGCA 59.965 50.000 0.00 0.00 38.73 3.96
2029 5578 1.089920 GGCAAGAACACGAGATGCAT 58.910 50.000 0.00 0.00 38.73 3.96
2030 5579 1.202110 GGCAAGAACACGAGATGCATG 60.202 52.381 2.46 0.00 38.73 4.06
2031 5580 1.466167 GCAAGAACACGAGATGCATGT 59.534 47.619 2.46 0.00 37.00 3.21
2032 5581 2.672874 GCAAGAACACGAGATGCATGTA 59.327 45.455 2.46 0.00 37.00 2.29
2033 5582 3.242220 GCAAGAACACGAGATGCATGTAG 60.242 47.826 2.46 2.36 37.00 2.74
2034 5583 2.544685 AGAACACGAGATGCATGTAGC 58.455 47.619 2.46 0.00 45.96 3.58
2044 5593 2.256391 GCATGTAGCACAAGCCACA 58.744 52.632 0.00 0.00 46.06 4.17
2045 5594 0.169672 GCATGTAGCACAAGCCACAG 59.830 55.000 0.00 0.00 45.24 3.66
2046 5595 0.169672 CATGTAGCACAAGCCACAGC 59.830 55.000 0.00 0.00 45.24 4.40
2047 5596 0.250858 ATGTAGCACAAGCCACAGCA 60.251 50.000 0.00 0.00 45.24 4.41
2048 5597 0.886043 TGTAGCACAAGCCACAGCAG 60.886 55.000 0.00 0.00 37.46 4.24
2049 5598 1.302752 TAGCACAAGCCACAGCAGG 60.303 57.895 0.00 0.00 43.56 4.85
2050 5599 1.767654 TAGCACAAGCCACAGCAGGA 61.768 55.000 0.00 0.00 43.56 3.86
2051 5600 2.623915 GCACAAGCCACAGCAGGAG 61.624 63.158 0.00 0.00 43.56 3.69
2052 5601 2.282040 ACAAGCCACAGCAGGAGC 60.282 61.111 0.00 0.00 43.56 4.70
2062 5611 4.779819 GCAGGAGCGCATGAAAAG 57.220 55.556 11.47 0.00 0.00 2.27
2063 5612 1.138247 GCAGGAGCGCATGAAAAGG 59.862 57.895 11.47 0.00 0.00 3.11
2064 5613 1.589716 GCAGGAGCGCATGAAAAGGT 61.590 55.000 11.47 0.00 0.00 3.50
2065 5614 0.883833 CAGGAGCGCATGAAAAGGTT 59.116 50.000 11.47 0.00 0.00 3.50
2066 5615 1.135575 CAGGAGCGCATGAAAAGGTTC 60.136 52.381 11.47 0.00 0.00 3.62
2068 5617 1.269448 GGAGCGCATGAAAAGGTTCAA 59.731 47.619 11.47 0.00 46.66 2.69
2069 5618 2.288152 GGAGCGCATGAAAAGGTTCAAA 60.288 45.455 11.47 0.00 46.66 2.69
2070 5619 2.982470 GAGCGCATGAAAAGGTTCAAAG 59.018 45.455 11.47 0.00 46.66 2.77
2071 5620 2.362077 AGCGCATGAAAAGGTTCAAAGT 59.638 40.909 11.47 0.00 46.66 2.66
2072 5621 3.123050 GCGCATGAAAAGGTTCAAAGTT 58.877 40.909 0.30 0.00 46.66 2.66
2073 5622 4.037446 AGCGCATGAAAAGGTTCAAAGTTA 59.963 37.500 11.47 0.00 46.66 2.24
2074 5623 4.382754 GCGCATGAAAAGGTTCAAAGTTAG 59.617 41.667 0.30 0.00 46.66 2.34
2075 5624 5.519722 CGCATGAAAAGGTTCAAAGTTAGT 58.480 37.500 0.00 0.00 46.66 2.24
2076 5625 5.977129 CGCATGAAAAGGTTCAAAGTTAGTT 59.023 36.000 0.00 0.00 46.66 2.24
2077 5626 6.475402 CGCATGAAAAGGTTCAAAGTTAGTTT 59.525 34.615 0.00 0.00 46.66 2.66
2078 5627 7.010091 CGCATGAAAAGGTTCAAAGTTAGTTTT 59.990 33.333 0.00 0.00 46.66 2.43
2079 5628 8.116136 GCATGAAAAGGTTCAAAGTTAGTTTTG 58.884 33.333 0.00 0.00 46.66 2.44
2080 5629 8.603181 CATGAAAAGGTTCAAAGTTAGTTTTGG 58.397 33.333 0.00 0.00 46.66 3.28
2081 5630 7.897864 TGAAAAGGTTCAAAGTTAGTTTTGGA 58.102 30.769 0.00 0.00 40.87 3.53
2082 5631 8.536175 TGAAAAGGTTCAAAGTTAGTTTTGGAT 58.464 29.630 0.00 0.00 40.87 3.41
2083 5632 9.378551 GAAAAGGTTCAAAGTTAGTTTTGGATT 57.621 29.630 0.00 0.00 38.33 3.01
2084 5633 8.716646 AAAGGTTCAAAGTTAGTTTTGGATTG 57.283 30.769 0.00 0.00 38.33 2.67
2085 5634 6.280643 AGGTTCAAAGTTAGTTTTGGATTGC 58.719 36.000 0.00 0.00 38.33 3.56
2086 5635 6.045955 GGTTCAAAGTTAGTTTTGGATTGCA 58.954 36.000 0.00 0.00 38.33 4.08
2087 5636 6.536941 GGTTCAAAGTTAGTTTTGGATTGCAA 59.463 34.615 0.00 0.00 38.33 4.08
2088 5637 7.398746 GTTCAAAGTTAGTTTTGGATTGCAAC 58.601 34.615 0.00 0.00 38.33 4.17
2089 5638 6.634805 TCAAAGTTAGTTTTGGATTGCAACA 58.365 32.000 0.00 0.00 38.33 3.33
2090 5639 7.099764 TCAAAGTTAGTTTTGGATTGCAACAA 58.900 30.769 0.00 0.00 38.33 2.83
2091 5640 7.768120 TCAAAGTTAGTTTTGGATTGCAACAAT 59.232 29.630 0.00 0.00 38.33 2.71
2092 5641 7.481275 AAGTTAGTTTTGGATTGCAACAATG 57.519 32.000 0.00 0.00 0.00 2.82
2111 5660 9.796062 CAACAATGCTAACATTTATTCAACAAC 57.204 29.630 0.00 0.00 44.21 3.32
2112 5661 9.539825 AACAATGCTAACATTTATTCAACAACA 57.460 25.926 0.00 0.00 44.21 3.33
2113 5662 9.539825 ACAATGCTAACATTTATTCAACAACAA 57.460 25.926 0.00 0.00 44.21 2.83
2130 5679 9.202273 TCAACAACAAAATAATAGTTCCAATGC 57.798 29.630 0.00 0.00 0.00 3.56
2131 5680 8.986847 CAACAACAAAATAATAGTTCCAATGCA 58.013 29.630 0.00 0.00 0.00 3.96
2132 5681 9.553064 AACAACAAAATAATAGTTCCAATGCAA 57.447 25.926 0.00 0.00 0.00 4.08
2133 5682 9.723601 ACAACAAAATAATAGTTCCAATGCAAT 57.276 25.926 0.00 0.00 0.00 3.56
2134 5683 9.976255 CAACAAAATAATAGTTCCAATGCAATG 57.024 29.630 0.00 0.00 0.00 2.82
2135 5684 9.723601 AACAAAATAATAGTTCCAATGCAATGT 57.276 25.926 0.21 0.00 0.00 2.71
2136 5685 9.723601 ACAAAATAATAGTTCCAATGCAATGTT 57.276 25.926 0.21 0.00 0.00 2.71
2137 5686 9.976255 CAAAATAATAGTTCCAATGCAATGTTG 57.024 29.630 0.21 0.00 0.00 3.33
2151 5700 2.681848 CAATGTTGCAGACCTCATCTCC 59.318 50.000 0.00 0.00 34.41 3.71
2152 5701 1.351076 TGTTGCAGACCTCATCTCCA 58.649 50.000 0.00 0.00 34.41 3.86
2153 5702 1.699083 TGTTGCAGACCTCATCTCCAA 59.301 47.619 0.00 0.00 32.32 3.53
2154 5703 2.106338 TGTTGCAGACCTCATCTCCAAA 59.894 45.455 0.00 0.00 36.84 3.28
2155 5704 2.746362 GTTGCAGACCTCATCTCCAAAG 59.254 50.000 0.00 0.00 36.84 2.77
2156 5705 1.980765 TGCAGACCTCATCTCCAAAGT 59.019 47.619 0.00 0.00 34.41 2.66
2157 5706 3.173151 TGCAGACCTCATCTCCAAAGTA 58.827 45.455 0.00 0.00 34.41 2.24
2158 5707 3.055819 TGCAGACCTCATCTCCAAAGTAC 60.056 47.826 0.00 0.00 34.41 2.73
2159 5708 3.775202 CAGACCTCATCTCCAAAGTACG 58.225 50.000 0.00 0.00 34.41 3.67
2160 5709 2.761208 AGACCTCATCTCCAAAGTACGG 59.239 50.000 0.00 0.00 28.16 4.02
2161 5710 2.496470 GACCTCATCTCCAAAGTACGGT 59.504 50.000 0.00 0.00 0.00 4.83
2162 5711 3.698040 GACCTCATCTCCAAAGTACGGTA 59.302 47.826 0.00 0.00 0.00 4.02
2163 5712 4.287552 ACCTCATCTCCAAAGTACGGTAT 58.712 43.478 0.00 0.00 0.00 2.73
2164 5713 4.099573 ACCTCATCTCCAAAGTACGGTATG 59.900 45.833 0.00 0.00 0.00 2.39
2165 5714 4.341235 CCTCATCTCCAAAGTACGGTATGA 59.659 45.833 0.00 0.00 0.00 2.15
2166 5715 5.258456 TCATCTCCAAAGTACGGTATGAC 57.742 43.478 0.00 0.00 0.00 3.06
2167 5716 4.707934 TCATCTCCAAAGTACGGTATGACA 59.292 41.667 0.00 0.00 0.00 3.58
2168 5717 4.445452 TCTCCAAAGTACGGTATGACAC 57.555 45.455 0.00 0.00 0.00 3.67
2169 5718 4.084287 TCTCCAAAGTACGGTATGACACT 58.916 43.478 0.00 0.00 0.00 3.55
2170 5719 5.255687 TCTCCAAAGTACGGTATGACACTA 58.744 41.667 0.00 0.00 0.00 2.74
2171 5720 5.889853 TCTCCAAAGTACGGTATGACACTAT 59.110 40.000 0.00 0.00 0.00 2.12
2172 5721 5.898174 TCCAAAGTACGGTATGACACTATG 58.102 41.667 0.00 0.00 0.00 2.23
2173 5722 5.653330 TCCAAAGTACGGTATGACACTATGA 59.347 40.000 0.00 0.00 0.00 2.15
2174 5723 5.747197 CCAAAGTACGGTATGACACTATGAC 59.253 44.000 0.00 0.00 0.00 3.06
2175 5724 6.327154 CAAAGTACGGTATGACACTATGACA 58.673 40.000 0.00 0.00 0.00 3.58
2176 5725 5.752892 AGTACGGTATGACACTATGACAG 57.247 43.478 0.00 0.00 0.00 3.51
2177 5726 5.191426 AGTACGGTATGACACTATGACAGT 58.809 41.667 0.00 0.00 38.32 3.55
2178 5727 6.351711 AGTACGGTATGACACTATGACAGTA 58.648 40.000 0.00 0.00 34.98 2.74
2179 5728 5.752892 ACGGTATGACACTATGACAGTAG 57.247 43.478 0.00 0.00 34.98 2.57
2180 5729 5.191426 ACGGTATGACACTATGACAGTAGT 58.809 41.667 0.00 0.00 34.98 2.73
2189 5738 3.248043 TGACAGTAGTGGCAATGGC 57.752 52.632 2.75 0.00 39.49 4.40
2190 5739 0.399833 TGACAGTAGTGGCAATGGCA 59.600 50.000 2.75 5.05 39.49 4.92
2191 5740 1.004628 TGACAGTAGTGGCAATGGCAT 59.995 47.619 13.81 4.95 39.49 4.40
2192 5741 2.238395 TGACAGTAGTGGCAATGGCATA 59.762 45.455 13.81 3.95 39.49 3.14
2193 5742 2.614057 GACAGTAGTGGCAATGGCATAC 59.386 50.000 13.81 15.13 43.71 2.39
2194 5743 2.239654 ACAGTAGTGGCAATGGCATACT 59.760 45.455 13.81 16.92 43.71 2.12
2195 5744 3.454447 ACAGTAGTGGCAATGGCATACTA 59.546 43.478 21.48 14.12 43.71 1.82
2196 5745 4.060900 CAGTAGTGGCAATGGCATACTAG 58.939 47.826 21.48 15.54 39.96 2.57
2197 5746 2.645838 AGTGGCAATGGCATACTAGG 57.354 50.000 13.81 0.00 43.71 3.02
2198 5747 1.143684 AGTGGCAATGGCATACTAGGG 59.856 52.381 13.81 0.00 43.71 3.53
2199 5748 0.178992 TGGCAATGGCATACTAGGGC 60.179 55.000 5.05 1.67 43.71 5.19
2200 5749 0.111253 GGCAATGGCATACTAGGGCT 59.889 55.000 0.00 0.00 43.71 5.19
2201 5750 1.479389 GGCAATGGCATACTAGGGCTT 60.479 52.381 0.00 0.00 43.71 4.35
2202 5751 2.310538 GCAATGGCATACTAGGGCTTT 58.689 47.619 0.00 0.00 40.72 3.51
2203 5752 2.695147 GCAATGGCATACTAGGGCTTTT 59.305 45.455 0.00 0.00 40.72 2.27
2204 5753 3.491447 GCAATGGCATACTAGGGCTTTTG 60.491 47.826 0.00 4.95 40.72 2.44
2205 5754 3.951563 ATGGCATACTAGGGCTTTTGA 57.048 42.857 0.00 0.00 0.00 2.69
2206 5755 2.999331 TGGCATACTAGGGCTTTTGAC 58.001 47.619 0.00 0.00 0.00 3.18
2207 5756 2.576191 TGGCATACTAGGGCTTTTGACT 59.424 45.455 0.00 0.00 0.00 3.41
2208 5757 3.010138 TGGCATACTAGGGCTTTTGACTT 59.990 43.478 0.00 0.00 0.00 3.01
2209 5758 4.017126 GGCATACTAGGGCTTTTGACTTT 58.983 43.478 0.00 0.00 0.00 2.66
2210 5759 4.142381 GGCATACTAGGGCTTTTGACTTTG 60.142 45.833 0.00 0.00 0.00 2.77
2211 5760 4.459337 GCATACTAGGGCTTTTGACTTTGT 59.541 41.667 0.00 0.00 0.00 2.83
2212 5761 5.392057 GCATACTAGGGCTTTTGACTTTGTC 60.392 44.000 0.00 0.00 0.00 3.18
2213 5762 3.487372 ACTAGGGCTTTTGACTTTGTCC 58.513 45.455 0.00 0.00 0.00 4.02
2214 5763 2.452600 AGGGCTTTTGACTTTGTCCA 57.547 45.000 0.00 0.00 0.00 4.02
2215 5764 2.310538 AGGGCTTTTGACTTTGTCCAG 58.689 47.619 0.00 0.00 0.00 3.86
2216 5765 2.091885 AGGGCTTTTGACTTTGTCCAGA 60.092 45.455 0.00 0.00 0.00 3.86
2217 5766 2.693074 GGGCTTTTGACTTTGTCCAGAA 59.307 45.455 0.00 0.00 0.00 3.02
2218 5767 3.490933 GGGCTTTTGACTTTGTCCAGAAC 60.491 47.826 0.00 0.00 0.00 3.01
2219 5768 3.381590 GGCTTTTGACTTTGTCCAGAACT 59.618 43.478 0.00 0.00 0.00 3.01
2220 5769 4.578928 GGCTTTTGACTTTGTCCAGAACTA 59.421 41.667 0.00 0.00 0.00 2.24
2221 5770 5.278022 GGCTTTTGACTTTGTCCAGAACTAG 60.278 44.000 0.00 0.00 0.00 2.57
2222 5771 5.278022 GCTTTTGACTTTGTCCAGAACTAGG 60.278 44.000 0.00 0.00 0.00 3.02
2223 5772 3.402628 TGACTTTGTCCAGAACTAGGC 57.597 47.619 0.00 0.00 0.00 3.93
2224 5773 2.703536 TGACTTTGTCCAGAACTAGGCA 59.296 45.455 0.00 0.00 0.00 4.75
2225 5774 3.067833 GACTTTGTCCAGAACTAGGCAC 58.932 50.000 0.00 0.00 0.00 5.01
2226 5775 2.069273 CTTTGTCCAGAACTAGGCACG 58.931 52.381 0.00 0.00 0.00 5.34
2227 5776 0.320421 TTGTCCAGAACTAGGCACGC 60.320 55.000 0.00 0.00 0.00 5.34
2228 5777 1.292223 GTCCAGAACTAGGCACGCA 59.708 57.895 0.00 0.00 0.00 5.24
2229 5778 0.737715 GTCCAGAACTAGGCACGCAG 60.738 60.000 0.00 0.00 0.00 5.18
2230 5779 1.448540 CCAGAACTAGGCACGCAGG 60.449 63.158 0.00 0.00 0.00 4.85
2231 5780 2.103042 CAGAACTAGGCACGCAGGC 61.103 63.158 0.00 0.00 44.61 4.85
2238 5787 4.120331 GGCACGCAGGCATTGTCC 62.120 66.667 0.00 0.00 43.51 4.02
2239 5788 4.120331 GCACGCAGGCATTGTCCC 62.120 66.667 0.00 0.00 0.00 4.46
2240 5789 2.672651 CACGCAGGCATTGTCCCA 60.673 61.111 0.00 0.00 0.00 4.37
2241 5790 2.048023 CACGCAGGCATTGTCCCAT 61.048 57.895 0.00 0.00 0.00 4.00
2242 5791 2.048023 ACGCAGGCATTGTCCCATG 61.048 57.895 0.00 0.00 0.00 3.66
2243 5792 2.048023 CGCAGGCATTGTCCCATGT 61.048 57.895 0.00 0.00 0.00 3.21
2244 5793 1.514087 GCAGGCATTGTCCCATGTG 59.486 57.895 0.00 0.00 0.00 3.21
2245 5794 1.952102 GCAGGCATTGTCCCATGTGG 61.952 60.000 0.00 0.00 0.00 4.17
2246 5795 1.683365 AGGCATTGTCCCATGTGGC 60.683 57.895 0.00 0.00 37.40 5.01
2247 5796 2.724273 GGCATTGTCCCATGTGGCC 61.724 63.158 0.00 0.00 0.00 5.36
2248 5797 3.067480 GCATTGTCCCATGTGGCCG 62.067 63.158 0.00 0.00 0.00 6.13
2249 5798 1.678635 CATTGTCCCATGTGGCCGT 60.679 57.895 0.00 0.00 0.00 5.68
2250 5799 1.678635 ATTGTCCCATGTGGCCGTG 60.679 57.895 0.00 0.00 0.00 4.94
2251 5800 3.859118 TTGTCCCATGTGGCCGTGG 62.859 63.158 13.24 13.24 45.85 4.94
2262 5811 4.230002 GCCGTGGGCCGTAGCATA 62.230 66.667 0.00 0.00 44.06 3.14
2263 5812 2.279918 CCGTGGGCCGTAGCATAC 60.280 66.667 0.00 0.00 42.56 2.39
2275 5824 3.510251 GTAGCATACGACATGCATGTG 57.490 47.619 35.92 26.87 46.77 3.21
2276 5825 2.314323 AGCATACGACATGCATGTGA 57.686 45.000 35.92 20.63 46.77 3.58
2277 5826 2.207590 AGCATACGACATGCATGTGAG 58.792 47.619 35.92 28.35 46.77 3.51
2278 5827 1.333524 GCATACGACATGCATGTGAGC 60.334 52.381 35.92 24.73 44.00 4.26
2279 5828 1.071041 CATACGACATGCATGTGAGCG 60.071 52.381 35.92 31.24 41.95 5.03
2280 5829 0.172352 TACGACATGCATGTGAGCGA 59.828 50.000 35.92 18.62 41.95 4.93
2281 5830 1.080435 ACGACATGCATGTGAGCGAG 61.080 55.000 35.92 19.99 41.95 5.03
2282 5831 1.351012 GACATGCATGTGAGCGAGC 59.649 57.895 35.92 16.20 41.95 5.03
2283 5832 2.044832 GACATGCATGTGAGCGAGCC 62.045 60.000 35.92 15.45 41.95 4.70
2284 5833 2.110352 CATGCATGTGAGCGAGCCA 61.110 57.895 18.91 0.00 37.31 4.75
2285 5834 1.818363 ATGCATGTGAGCGAGCCAG 60.818 57.895 0.00 0.00 37.31 4.85
2286 5835 3.873883 GCATGTGAGCGAGCCAGC 61.874 66.667 0.00 0.00 37.41 4.85
2293 5842 2.358003 AGCGAGCCAGCTTGTGAC 60.358 61.111 8.64 0.00 46.80 3.67
2294 5843 3.426568 GCGAGCCAGCTTGTGACC 61.427 66.667 8.64 0.00 0.00 4.02
2295 5844 2.031012 CGAGCCAGCTTGTGACCA 59.969 61.111 0.00 0.00 0.00 4.02
2296 5845 2.031516 CGAGCCAGCTTGTGACCAG 61.032 63.158 0.00 0.00 0.00 4.00
2297 5846 2.282040 AGCCAGCTTGTGACCAGC 60.282 61.111 0.00 0.00 0.00 4.85
2298 5847 2.595463 GCCAGCTTGTGACCAGCA 60.595 61.111 11.41 0.00 0.00 4.41
2299 5848 1.975407 GCCAGCTTGTGACCAGCAT 60.975 57.895 11.41 0.00 0.00 3.79
2300 5849 1.930908 GCCAGCTTGTGACCAGCATC 61.931 60.000 11.41 0.00 0.00 3.91
2301 5850 0.322277 CCAGCTTGTGACCAGCATCT 60.322 55.000 11.41 0.00 0.00 2.90
2302 5851 0.803117 CAGCTTGTGACCAGCATCTG 59.197 55.000 11.41 0.00 0.00 2.90
2303 5852 0.959372 AGCTTGTGACCAGCATCTGC 60.959 55.000 11.41 0.00 42.49 4.26
2304 5853 1.239296 GCTTGTGACCAGCATCTGCA 61.239 55.000 3.54 0.00 45.16 4.41
2305 5854 1.460504 CTTGTGACCAGCATCTGCAT 58.539 50.000 4.79 0.00 45.16 3.96
2306 5855 1.132453 CTTGTGACCAGCATCTGCATG 59.868 52.381 4.79 0.00 45.16 4.06
2307 5856 0.678684 TGTGACCAGCATCTGCATGG 60.679 55.000 14.93 14.93 45.16 3.66
2308 5857 0.393402 GTGACCAGCATCTGCATGGA 60.393 55.000 20.32 0.00 45.16 3.41
2309 5858 0.107361 TGACCAGCATCTGCATGGAG 60.107 55.000 20.32 8.12 45.16 3.86
2310 5859 1.445716 GACCAGCATCTGCATGGAGC 61.446 60.000 20.32 0.00 45.16 4.70
2311 5860 1.152943 CCAGCATCTGCATGGAGCT 60.153 57.895 9.76 0.97 45.94 4.09
2312 5861 0.752009 CCAGCATCTGCATGGAGCTT 60.752 55.000 9.76 0.00 45.94 3.74
2313 5862 0.663688 CAGCATCTGCATGGAGCTTC 59.336 55.000 9.76 0.00 45.94 3.86
2314 5863 0.547075 AGCATCTGCATGGAGCTTCT 59.453 50.000 9.76 0.00 45.94 2.85
2315 5864 1.064611 AGCATCTGCATGGAGCTTCTT 60.065 47.619 9.76 0.00 45.94 2.52
2316 5865 1.334243 GCATCTGCATGGAGCTTCTTC 59.666 52.381 9.76 0.00 45.94 2.87
2317 5866 1.948145 CATCTGCATGGAGCTTCTTCC 59.052 52.381 9.76 0.00 45.94 3.46
2318 5867 0.254178 TCTGCATGGAGCTTCTTCCC 59.746 55.000 9.76 0.00 45.94 3.97
2319 5868 0.034767 CTGCATGGAGCTTCTTCCCA 60.035 55.000 0.00 0.00 45.94 4.37
2320 5869 0.627451 TGCATGGAGCTTCTTCCCAT 59.373 50.000 0.00 0.00 45.94 4.00
2321 5870 1.006281 TGCATGGAGCTTCTTCCCATT 59.994 47.619 1.19 0.00 45.94 3.16
2322 5871 1.407979 GCATGGAGCTTCTTCCCATTG 59.592 52.381 1.19 0.33 38.53 2.82
2323 5872 1.407979 CATGGAGCTTCTTCCCATTGC 59.592 52.381 1.19 0.00 38.53 3.56
2324 5873 0.323725 TGGAGCTTCTTCCCATTGCC 60.324 55.000 0.00 0.00 36.35 4.52
2325 5874 0.323725 GGAGCTTCTTCCCATTGCCA 60.324 55.000 0.00 0.00 0.00 4.92
2326 5875 1.687368 GGAGCTTCTTCCCATTGCCAT 60.687 52.381 0.00 0.00 0.00 4.40
2327 5876 2.105766 GAGCTTCTTCCCATTGCCATT 58.894 47.619 0.00 0.00 0.00 3.16
2328 5877 2.498885 GAGCTTCTTCCCATTGCCATTT 59.501 45.455 0.00 0.00 0.00 2.32
2329 5878 2.235402 AGCTTCTTCCCATTGCCATTTG 59.765 45.455 0.00 0.00 0.00 2.32
2330 5879 2.624636 CTTCTTCCCATTGCCATTTGC 58.375 47.619 0.00 0.00 41.77 3.68
2331 5880 1.941377 TCTTCCCATTGCCATTTGCT 58.059 45.000 0.00 0.00 42.00 3.91
2332 5881 1.826720 TCTTCCCATTGCCATTTGCTC 59.173 47.619 0.00 0.00 42.00 4.26
2333 5882 0.531657 TTCCCATTGCCATTTGCTCG 59.468 50.000 0.00 0.00 42.00 5.03
2334 5883 1.519898 CCCATTGCCATTTGCTCGC 60.520 57.895 0.00 0.00 42.00 5.03
2335 5884 1.514087 CCATTGCCATTTGCTCGCT 59.486 52.632 0.00 0.00 42.00 4.93
2336 5885 0.740149 CCATTGCCATTTGCTCGCTA 59.260 50.000 0.00 0.00 42.00 4.26
2337 5886 1.268896 CCATTGCCATTTGCTCGCTAG 60.269 52.381 0.00 0.00 42.00 3.42
2346 5895 2.279385 GCTCGCTAGCTGCTCCTG 60.279 66.667 13.93 0.00 45.85 3.86
2347 5896 2.279385 CTCGCTAGCTGCTCCTGC 60.279 66.667 13.93 8.75 40.11 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.788684 TTCGTTCCGACAGAATTAATTCAA 57.211 33.333 26.02 10.68 35.95 2.69
39 40 3.692406 GGGAACAGAGGCGGACGT 61.692 66.667 0.00 0.00 0.00 4.34
148 149 0.032117 TCCGACCAGGAGACCATGAT 60.032 55.000 0.00 0.00 45.98 2.45
248 249 1.761174 GGGCTTCACCTTGGAGACA 59.239 57.895 0.00 0.00 39.10 3.41
422 1159 1.268896 CGGCCACTACGTACATCGATT 60.269 52.381 2.24 0.00 42.86 3.34
443 1180 2.563620 TCTTTGGGCACTACGTACATCA 59.436 45.455 0.00 0.00 0.00 3.07
492 1230 6.381994 ACATTACTGATGAAAGCATGGGAAAT 59.618 34.615 0.00 0.00 39.15 2.17
655 1794 4.503817 GCTGCAGAGAGAGATAGAGAGAGA 60.504 50.000 20.43 0.00 0.00 3.10
664 1808 0.976590 TGGCTGCTGCAGAGAGAGAT 60.977 55.000 32.30 0.00 41.91 2.75
864 2487 6.651225 GCACTAAAATGGGTCTAGATACATCC 59.349 42.308 11.19 0.92 0.00 3.51
915 2538 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
916 2539 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
930 2553 1.307097 CTAGTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
1132 3093 4.007644 CAGCGACTCCACCTGCCA 62.008 66.667 0.00 0.00 0.00 4.92
1275 3306 0.249615 CGACCGCCATGTGATGATCT 60.250 55.000 0.00 0.00 0.00 2.75
1408 4924 5.104610 TCACAAGTAGATACGAGGTCCTAGT 60.105 44.000 9.79 9.79 0.00 2.57
1441 4957 4.935578 TCCAACCAGTGATCTCTCTTCTA 58.064 43.478 0.00 0.00 0.00 2.10
1444 4960 2.235898 GCTCCAACCAGTGATCTCTCTT 59.764 50.000 0.00 0.00 0.00 2.85
1618 5138 0.032117 ATGGTCTCCTGGTCGGATGA 60.032 55.000 0.00 0.00 42.12 2.92
1620 5140 0.032117 TCATGGTCTCCTGGTCGGAT 60.032 55.000 0.00 0.00 42.12 4.18
1701 5221 1.611851 CTCACCTGCCTCCCTCAGT 60.612 63.158 0.00 0.00 0.00 3.41
1709 5235 3.699894 CCTCGTGCTCACCTGCCT 61.700 66.667 0.00 0.00 0.00 4.75
1788 5314 2.110899 TGCCTTTTCCCTATTCAACCCA 59.889 45.455 0.00 0.00 0.00 4.51
1856 5385 2.204463 TGATTTAGTCCCAGGCCATCA 58.796 47.619 5.01 0.00 0.00 3.07
1857 5386 3.181440 TGATGATTTAGTCCCAGGCCATC 60.181 47.826 5.01 0.00 0.00 3.51
1858 5387 2.785269 TGATGATTTAGTCCCAGGCCAT 59.215 45.455 5.01 0.00 0.00 4.40
1985 5534 5.130350 TGATTTTTGTTCCTCGGTCTTCTT 58.870 37.500 0.00 0.00 0.00 2.52
1986 5535 4.714632 TGATTTTTGTTCCTCGGTCTTCT 58.285 39.130 0.00 0.00 0.00 2.85
1987 5536 5.432885 TTGATTTTTGTTCCTCGGTCTTC 57.567 39.130 0.00 0.00 0.00 2.87
1988 5537 4.278419 CCTTGATTTTTGTTCCTCGGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
1989 5538 3.821033 CCTTGATTTTTGTTCCTCGGTCT 59.179 43.478 0.00 0.00 0.00 3.85
1990 5539 3.611766 GCCTTGATTTTTGTTCCTCGGTC 60.612 47.826 0.00 0.00 0.00 4.79
1991 5540 2.296190 GCCTTGATTTTTGTTCCTCGGT 59.704 45.455 0.00 0.00 0.00 4.69
1992 5541 2.295909 TGCCTTGATTTTTGTTCCTCGG 59.704 45.455 0.00 0.00 0.00 4.63
1993 5542 3.641437 TGCCTTGATTTTTGTTCCTCG 57.359 42.857 0.00 0.00 0.00 4.63
1994 5543 5.200368 TCTTGCCTTGATTTTTGTTCCTC 57.800 39.130 0.00 0.00 0.00 3.71
1995 5544 5.104982 TGTTCTTGCCTTGATTTTTGTTCCT 60.105 36.000 0.00 0.00 0.00 3.36
1996 5545 5.006649 GTGTTCTTGCCTTGATTTTTGTTCC 59.993 40.000 0.00 0.00 0.00 3.62
1997 5546 5.276348 CGTGTTCTTGCCTTGATTTTTGTTC 60.276 40.000 0.00 0.00 0.00 3.18
1998 5547 4.566360 CGTGTTCTTGCCTTGATTTTTGTT 59.434 37.500 0.00 0.00 0.00 2.83
1999 5548 4.111916 CGTGTTCTTGCCTTGATTTTTGT 58.888 39.130 0.00 0.00 0.00 2.83
2000 5549 4.358851 TCGTGTTCTTGCCTTGATTTTTG 58.641 39.130 0.00 0.00 0.00 2.44
2001 5550 4.338118 TCTCGTGTTCTTGCCTTGATTTTT 59.662 37.500 0.00 0.00 0.00 1.94
2002 5551 3.882888 TCTCGTGTTCTTGCCTTGATTTT 59.117 39.130 0.00 0.00 0.00 1.82
2003 5552 3.476552 TCTCGTGTTCTTGCCTTGATTT 58.523 40.909 0.00 0.00 0.00 2.17
2004 5553 3.126001 TCTCGTGTTCTTGCCTTGATT 57.874 42.857 0.00 0.00 0.00 2.57
2005 5554 2.839486 TCTCGTGTTCTTGCCTTGAT 57.161 45.000 0.00 0.00 0.00 2.57
2006 5555 2.416747 CATCTCGTGTTCTTGCCTTGA 58.583 47.619 0.00 0.00 0.00 3.02
2007 5556 1.135859 GCATCTCGTGTTCTTGCCTTG 60.136 52.381 0.00 0.00 0.00 3.61
2008 5557 1.160137 GCATCTCGTGTTCTTGCCTT 58.840 50.000 0.00 0.00 0.00 4.35
2009 5558 0.035317 TGCATCTCGTGTTCTTGCCT 59.965 50.000 0.00 0.00 32.39 4.75
2010 5559 1.089920 ATGCATCTCGTGTTCTTGCC 58.910 50.000 0.00 0.00 32.39 4.52
2011 5560 1.466167 ACATGCATCTCGTGTTCTTGC 59.534 47.619 0.00 0.00 41.98 4.01
2012 5561 3.242220 GCTACATGCATCTCGTGTTCTTG 60.242 47.826 0.00 0.00 41.98 3.02
2013 5562 2.932614 GCTACATGCATCTCGTGTTCTT 59.067 45.455 0.00 0.00 41.98 2.52
2014 5563 2.544685 GCTACATGCATCTCGTGTTCT 58.455 47.619 0.00 0.00 41.98 3.01
2031 5580 1.302752 CCTGCTGTGGCTTGTGCTA 60.303 57.895 0.00 0.00 39.59 3.49
2032 5581 2.596631 CCTGCTGTGGCTTGTGCT 60.597 61.111 0.00 0.00 39.59 4.40
2033 5582 2.595463 TCCTGCTGTGGCTTGTGC 60.595 61.111 0.00 0.00 39.59 4.57
2034 5583 2.623915 GCTCCTGCTGTGGCTTGTG 61.624 63.158 0.00 0.00 39.59 3.33
2035 5584 2.282040 GCTCCTGCTGTGGCTTGT 60.282 61.111 0.00 0.00 39.59 3.16
2036 5585 3.429141 CGCTCCTGCTGTGGCTTG 61.429 66.667 0.00 0.00 39.59 4.01
2040 5589 3.506096 CATGCGCTCCTGCTGTGG 61.506 66.667 9.73 0.00 36.97 4.17
2041 5590 1.579964 TTTCATGCGCTCCTGCTGTG 61.580 55.000 9.73 0.00 36.97 3.66
2042 5591 0.890542 TTTTCATGCGCTCCTGCTGT 60.891 50.000 9.73 0.00 36.97 4.40
2043 5592 0.179171 CTTTTCATGCGCTCCTGCTG 60.179 55.000 9.73 0.00 36.97 4.41
2044 5593 1.310933 CCTTTTCATGCGCTCCTGCT 61.311 55.000 9.73 0.00 36.97 4.24
2045 5594 1.138247 CCTTTTCATGCGCTCCTGC 59.862 57.895 9.73 0.00 0.00 4.85
2046 5595 0.883833 AACCTTTTCATGCGCTCCTG 59.116 50.000 9.73 3.71 0.00 3.86
2047 5596 1.168714 GAACCTTTTCATGCGCTCCT 58.831 50.000 9.73 0.00 0.00 3.69
2048 5597 0.881118 TGAACCTTTTCATGCGCTCC 59.119 50.000 9.73 0.00 36.79 4.70
2049 5598 2.704725 TTGAACCTTTTCATGCGCTC 57.295 45.000 9.73 0.00 41.50 5.03
2050 5599 2.362077 ACTTTGAACCTTTTCATGCGCT 59.638 40.909 9.73 0.00 41.50 5.92
2051 5600 2.742774 ACTTTGAACCTTTTCATGCGC 58.257 42.857 0.00 0.00 41.50 6.09
2052 5601 5.519722 ACTAACTTTGAACCTTTTCATGCG 58.480 37.500 0.00 0.00 41.50 4.73
2053 5602 7.770801 AAACTAACTTTGAACCTTTTCATGC 57.229 32.000 0.00 0.00 41.50 4.06
2054 5603 8.603181 CCAAAACTAACTTTGAACCTTTTCATG 58.397 33.333 0.00 0.00 41.50 3.07
2055 5604 8.536175 TCCAAAACTAACTTTGAACCTTTTCAT 58.464 29.630 0.00 0.00 41.50 2.57
2056 5605 7.897864 TCCAAAACTAACTTTGAACCTTTTCA 58.102 30.769 0.00 0.00 40.14 2.69
2057 5606 8.942338 ATCCAAAACTAACTTTGAACCTTTTC 57.058 30.769 0.00 0.00 38.35 2.29
2058 5607 9.161629 CAATCCAAAACTAACTTTGAACCTTTT 57.838 29.630 0.00 0.00 38.35 2.27
2059 5608 7.279981 GCAATCCAAAACTAACTTTGAACCTTT 59.720 33.333 0.00 0.00 38.35 3.11
2060 5609 6.761242 GCAATCCAAAACTAACTTTGAACCTT 59.239 34.615 0.00 0.00 38.35 3.50
2061 5610 6.127196 TGCAATCCAAAACTAACTTTGAACCT 60.127 34.615 0.00 0.00 38.35 3.50
2062 5611 6.045955 TGCAATCCAAAACTAACTTTGAACC 58.954 36.000 0.00 0.00 38.35 3.62
2063 5612 7.064016 TGTTGCAATCCAAAACTAACTTTGAAC 59.936 33.333 0.59 0.00 38.35 3.18
2064 5613 7.099764 TGTTGCAATCCAAAACTAACTTTGAA 58.900 30.769 0.59 0.00 38.35 2.69
2065 5614 6.634805 TGTTGCAATCCAAAACTAACTTTGA 58.365 32.000 0.59 0.00 38.35 2.69
2066 5615 6.900568 TGTTGCAATCCAAAACTAACTTTG 57.099 33.333 0.59 0.00 34.68 2.77
2067 5616 7.918643 CATTGTTGCAATCCAAAACTAACTTT 58.081 30.769 0.59 0.00 34.68 2.66
2068 5617 7.481275 CATTGTTGCAATCCAAAACTAACTT 57.519 32.000 0.59 0.00 34.68 2.66
2085 5634 9.796062 GTTGTTGAATAAATGTTAGCATTGTTG 57.204 29.630 5.49 0.00 43.89 3.33
2086 5635 9.539825 TGTTGTTGAATAAATGTTAGCATTGTT 57.460 25.926 5.49 4.50 43.89 2.83
2087 5636 9.539825 TTGTTGTTGAATAAATGTTAGCATTGT 57.460 25.926 5.49 0.00 43.89 2.71
2104 5653 9.202273 GCATTGGAACTATTATTTTGTTGTTGA 57.798 29.630 0.00 0.00 0.00 3.18
2105 5654 8.986847 TGCATTGGAACTATTATTTTGTTGTTG 58.013 29.630 0.00 0.00 0.00 3.33
2106 5655 9.553064 TTGCATTGGAACTATTATTTTGTTGTT 57.447 25.926 0.00 0.00 0.00 2.83
2107 5656 9.723601 ATTGCATTGGAACTATTATTTTGTTGT 57.276 25.926 0.00 0.00 0.00 3.32
2108 5657 9.976255 CATTGCATTGGAACTATTATTTTGTTG 57.024 29.630 0.47 0.00 0.00 3.33
2109 5658 9.723601 ACATTGCATTGGAACTATTATTTTGTT 57.276 25.926 12.87 0.00 0.00 2.83
2110 5659 9.723601 AACATTGCATTGGAACTATTATTTTGT 57.276 25.926 12.87 0.00 0.00 2.83
2111 5660 9.976255 CAACATTGCATTGGAACTATTATTTTG 57.024 29.630 12.87 0.90 0.00 2.44
2130 5679 2.681848 GGAGATGAGGTCTGCAACATTG 59.318 50.000 0.00 0.00 44.08 2.82
2131 5680 2.996631 GGAGATGAGGTCTGCAACATT 58.003 47.619 0.00 0.00 44.08 2.71
2132 5681 2.706339 GGAGATGAGGTCTGCAACAT 57.294 50.000 0.00 0.00 44.08 2.71
2137 5686 2.777832 ACTTTGGAGATGAGGTCTGC 57.222 50.000 0.00 0.00 44.83 4.26
2138 5687 3.429547 CCGTACTTTGGAGATGAGGTCTG 60.430 52.174 0.00 0.00 37.29 3.51
2139 5688 2.761208 CCGTACTTTGGAGATGAGGTCT 59.239 50.000 0.00 0.00 40.81 3.85
2140 5689 2.496470 ACCGTACTTTGGAGATGAGGTC 59.504 50.000 0.00 0.00 0.00 3.85
2141 5690 2.537143 ACCGTACTTTGGAGATGAGGT 58.463 47.619 0.00 0.00 0.00 3.85
2142 5691 4.341235 TCATACCGTACTTTGGAGATGAGG 59.659 45.833 0.00 0.00 32.48 3.86
2143 5692 5.163550 TGTCATACCGTACTTTGGAGATGAG 60.164 44.000 0.00 0.00 34.98 2.90
2144 5693 4.707934 TGTCATACCGTACTTTGGAGATGA 59.292 41.667 0.00 0.00 33.23 2.92
2145 5694 4.804139 GTGTCATACCGTACTTTGGAGATG 59.196 45.833 0.00 0.00 0.00 2.90
2146 5695 4.710375 AGTGTCATACCGTACTTTGGAGAT 59.290 41.667 0.00 0.00 0.00 2.75
2147 5696 4.084287 AGTGTCATACCGTACTTTGGAGA 58.916 43.478 0.00 0.00 0.00 3.71
2148 5697 4.451629 AGTGTCATACCGTACTTTGGAG 57.548 45.455 0.00 0.00 0.00 3.86
2149 5698 5.653330 TCATAGTGTCATACCGTACTTTGGA 59.347 40.000 0.00 0.00 0.00 3.53
2150 5699 5.747197 GTCATAGTGTCATACCGTACTTTGG 59.253 44.000 0.00 0.00 0.00 3.28
2151 5700 6.327154 TGTCATAGTGTCATACCGTACTTTG 58.673 40.000 0.00 0.00 0.00 2.77
2152 5701 6.152323 ACTGTCATAGTGTCATACCGTACTTT 59.848 38.462 0.00 0.00 38.49 2.66
2153 5702 5.651139 ACTGTCATAGTGTCATACCGTACTT 59.349 40.000 0.00 0.00 38.49 2.24
2154 5703 5.191426 ACTGTCATAGTGTCATACCGTACT 58.809 41.667 0.00 0.00 38.49 2.73
2155 5704 5.496133 ACTGTCATAGTGTCATACCGTAC 57.504 43.478 0.00 0.00 38.49 3.67
2156 5705 6.259387 CACTACTGTCATAGTGTCATACCGTA 59.741 42.308 5.02 0.00 44.74 4.02
2157 5706 5.066117 CACTACTGTCATAGTGTCATACCGT 59.934 44.000 5.02 0.00 44.74 4.83
2158 5707 5.511571 CACTACTGTCATAGTGTCATACCG 58.488 45.833 5.02 0.00 44.74 4.02
2167 5716 3.682718 GCCATTGCCACTACTGTCATAGT 60.683 47.826 0.00 0.00 43.56 2.12
2168 5717 2.874701 GCCATTGCCACTACTGTCATAG 59.125 50.000 0.00 0.00 0.00 2.23
2169 5718 2.238395 TGCCATTGCCACTACTGTCATA 59.762 45.455 0.00 0.00 36.33 2.15
2170 5719 1.004628 TGCCATTGCCACTACTGTCAT 59.995 47.619 0.00 0.00 36.33 3.06
2171 5720 0.399833 TGCCATTGCCACTACTGTCA 59.600 50.000 0.00 0.00 36.33 3.58
2172 5721 1.755179 ATGCCATTGCCACTACTGTC 58.245 50.000 0.00 0.00 36.33 3.51
2173 5722 2.239654 AGTATGCCATTGCCACTACTGT 59.760 45.455 0.00 0.00 36.33 3.55
2174 5723 2.923121 AGTATGCCATTGCCACTACTG 58.077 47.619 0.00 0.00 36.33 2.74
2175 5724 3.071602 CCTAGTATGCCATTGCCACTACT 59.928 47.826 0.00 0.65 34.61 2.57
2176 5725 3.403038 CCTAGTATGCCATTGCCACTAC 58.597 50.000 0.00 0.00 34.61 2.73
2177 5726 2.371841 CCCTAGTATGCCATTGCCACTA 59.628 50.000 0.00 1.85 34.61 2.74
2178 5727 1.143684 CCCTAGTATGCCATTGCCACT 59.856 52.381 0.00 0.00 36.22 4.00
2179 5728 1.609208 CCCTAGTATGCCATTGCCAC 58.391 55.000 0.00 0.00 36.33 5.01
2180 5729 0.178992 GCCCTAGTATGCCATTGCCA 60.179 55.000 0.00 0.00 36.33 4.92
2181 5730 0.111253 AGCCCTAGTATGCCATTGCC 59.889 55.000 0.00 0.00 36.33 4.52
2182 5731 1.986882 AAGCCCTAGTATGCCATTGC 58.013 50.000 0.00 0.00 38.26 3.56
2183 5732 3.953612 TCAAAAGCCCTAGTATGCCATTG 59.046 43.478 0.00 0.00 0.00 2.82
2184 5733 3.954258 GTCAAAAGCCCTAGTATGCCATT 59.046 43.478 0.00 0.00 0.00 3.16
2185 5734 3.203040 AGTCAAAAGCCCTAGTATGCCAT 59.797 43.478 0.00 0.00 0.00 4.40
2186 5735 2.576191 AGTCAAAAGCCCTAGTATGCCA 59.424 45.455 0.00 0.00 0.00 4.92
2187 5736 3.283259 AGTCAAAAGCCCTAGTATGCC 57.717 47.619 0.00 0.00 0.00 4.40
2188 5737 4.459337 ACAAAGTCAAAAGCCCTAGTATGC 59.541 41.667 0.00 0.00 0.00 3.14
2189 5738 5.123979 GGACAAAGTCAAAAGCCCTAGTATG 59.876 44.000 0.00 0.00 33.68 2.39
2190 5739 5.222048 TGGACAAAGTCAAAAGCCCTAGTAT 60.222 40.000 0.00 0.00 33.68 2.12
2191 5740 4.103469 TGGACAAAGTCAAAAGCCCTAGTA 59.897 41.667 0.00 0.00 33.68 1.82
2192 5741 3.117663 TGGACAAAGTCAAAAGCCCTAGT 60.118 43.478 0.00 0.00 33.68 2.57
2193 5742 3.486383 TGGACAAAGTCAAAAGCCCTAG 58.514 45.455 0.00 0.00 33.68 3.02
2194 5743 3.137544 TCTGGACAAAGTCAAAAGCCCTA 59.862 43.478 0.00 0.00 33.68 3.53
2195 5744 2.091885 TCTGGACAAAGTCAAAAGCCCT 60.092 45.455 0.00 0.00 33.68 5.19
2196 5745 2.306847 TCTGGACAAAGTCAAAAGCCC 58.693 47.619 0.00 0.00 33.68 5.19
2197 5746 3.381590 AGTTCTGGACAAAGTCAAAAGCC 59.618 43.478 0.00 0.00 33.68 4.35
2198 5747 4.639135 AGTTCTGGACAAAGTCAAAAGC 57.361 40.909 0.00 0.00 33.68 3.51
2199 5748 5.278022 GCCTAGTTCTGGACAAAGTCAAAAG 60.278 44.000 0.00 0.00 33.68 2.27
2200 5749 4.578928 GCCTAGTTCTGGACAAAGTCAAAA 59.421 41.667 0.00 0.00 33.68 2.44
2201 5750 4.134563 GCCTAGTTCTGGACAAAGTCAAA 58.865 43.478 0.00 0.00 33.68 2.69
2202 5751 3.135712 TGCCTAGTTCTGGACAAAGTCAA 59.864 43.478 0.00 0.00 33.68 3.18
2203 5752 2.703536 TGCCTAGTTCTGGACAAAGTCA 59.296 45.455 0.00 0.00 33.68 3.41
2204 5753 3.067833 GTGCCTAGTTCTGGACAAAGTC 58.932 50.000 0.00 0.00 0.00 3.01
2205 5754 2.548067 CGTGCCTAGTTCTGGACAAAGT 60.548 50.000 0.00 0.00 0.00 2.66
2206 5755 2.069273 CGTGCCTAGTTCTGGACAAAG 58.931 52.381 0.00 0.00 0.00 2.77
2207 5756 1.876416 GCGTGCCTAGTTCTGGACAAA 60.876 52.381 0.00 0.00 0.00 2.83
2208 5757 0.320421 GCGTGCCTAGTTCTGGACAA 60.320 55.000 0.00 0.00 0.00 3.18
2209 5758 1.292223 GCGTGCCTAGTTCTGGACA 59.708 57.895 0.00 0.00 0.00 4.02
2210 5759 0.737715 CTGCGTGCCTAGTTCTGGAC 60.738 60.000 0.00 0.00 0.00 4.02
2211 5760 1.591703 CTGCGTGCCTAGTTCTGGA 59.408 57.895 0.00 0.00 0.00 3.86
2212 5761 1.448540 CCTGCGTGCCTAGTTCTGG 60.449 63.158 0.00 0.00 0.00 3.86
2213 5762 2.103042 GCCTGCGTGCCTAGTTCTG 61.103 63.158 0.00 0.00 0.00 3.02
2214 5763 1.903877 ATGCCTGCGTGCCTAGTTCT 61.904 55.000 0.00 0.00 0.00 3.01
2215 5764 1.026718 AATGCCTGCGTGCCTAGTTC 61.027 55.000 0.00 0.00 0.00 3.01
2216 5765 1.002134 AATGCCTGCGTGCCTAGTT 60.002 52.632 0.00 0.00 0.00 2.24
2217 5766 1.746615 CAATGCCTGCGTGCCTAGT 60.747 57.895 0.00 0.00 0.00 2.57
2218 5767 1.709147 GACAATGCCTGCGTGCCTAG 61.709 60.000 0.00 0.00 0.00 3.02
2219 5768 1.745115 GACAATGCCTGCGTGCCTA 60.745 57.895 0.00 0.00 0.00 3.93
2220 5769 3.058160 GACAATGCCTGCGTGCCT 61.058 61.111 0.00 0.00 0.00 4.75
2221 5770 4.120331 GGACAATGCCTGCGTGCC 62.120 66.667 0.00 0.00 0.00 5.01
2222 5771 4.120331 GGGACAATGCCTGCGTGC 62.120 66.667 0.00 0.00 0.00 5.34
2223 5772 2.672651 TGGGACAATGCCTGCGTG 60.673 61.111 0.00 0.00 31.92 5.34
2255 5804 3.123050 TCACATGCATGTCGTATGCTAC 58.877 45.455 29.23 0.00 44.79 3.58
2256 5805 3.383761 CTCACATGCATGTCGTATGCTA 58.616 45.455 29.23 7.44 44.79 3.49
2257 5806 2.207590 CTCACATGCATGTCGTATGCT 58.792 47.619 29.23 2.57 44.79 3.79
2258 5807 1.333524 GCTCACATGCATGTCGTATGC 60.334 52.381 29.23 21.88 41.10 3.14
2259 5808 1.071041 CGCTCACATGCATGTCGTATG 60.071 52.381 29.23 17.58 42.91 2.39
2260 5809 1.202405 TCGCTCACATGCATGTCGTAT 60.202 47.619 29.23 5.02 39.39 3.06
2261 5810 0.172352 TCGCTCACATGCATGTCGTA 59.828 50.000 29.23 16.20 39.39 3.43
2262 5811 1.079888 TCGCTCACATGCATGTCGT 60.080 52.632 29.23 5.85 39.39 4.34
2263 5812 1.634753 CTCGCTCACATGCATGTCG 59.365 57.895 29.23 26.95 39.39 4.35
2264 5813 1.351012 GCTCGCTCACATGCATGTC 59.649 57.895 29.23 17.14 39.39 3.06
2265 5814 2.110967 GGCTCGCTCACATGCATGT 61.111 57.895 26.61 26.61 42.84 3.21
2266 5815 2.048312 CTGGCTCGCTCACATGCATG 62.048 60.000 25.09 25.09 0.00 4.06
2267 5816 1.818363 CTGGCTCGCTCACATGCAT 60.818 57.895 0.00 0.00 0.00 3.96
2268 5817 2.435410 CTGGCTCGCTCACATGCA 60.435 61.111 0.00 0.00 0.00 3.96
2269 5818 3.873883 GCTGGCTCGCTCACATGC 61.874 66.667 0.00 0.00 0.00 4.06
2270 5819 1.744368 AAGCTGGCTCGCTCACATG 60.744 57.895 2.51 0.00 39.86 3.21
2271 5820 1.744368 CAAGCTGGCTCGCTCACAT 60.744 57.895 2.51 0.00 39.86 3.21
2272 5821 2.357881 CAAGCTGGCTCGCTCACA 60.358 61.111 2.51 0.00 39.86 3.58
2273 5822 2.358003 ACAAGCTGGCTCGCTCAC 60.358 61.111 2.51 0.00 39.86 3.51
2274 5823 2.357881 CACAAGCTGGCTCGCTCA 60.358 61.111 2.51 0.00 39.86 4.26
2275 5824 2.047844 TCACAAGCTGGCTCGCTC 60.048 61.111 2.51 0.00 39.86 5.03
2276 5825 2.358003 GTCACAAGCTGGCTCGCT 60.358 61.111 0.00 0.00 43.31 4.93
2277 5826 3.426568 GGTCACAAGCTGGCTCGC 61.427 66.667 0.00 0.00 0.00 5.03
2278 5827 2.031012 TGGTCACAAGCTGGCTCG 59.969 61.111 0.00 0.00 0.00 5.03
2279 5828 2.331132 GCTGGTCACAAGCTGGCTC 61.331 63.158 0.00 0.00 0.00 4.70
2280 5829 2.282040 GCTGGTCACAAGCTGGCT 60.282 61.111 0.00 0.00 0.00 4.75
2281 5830 1.930908 GATGCTGGTCACAAGCTGGC 61.931 60.000 5.56 0.00 0.00 4.85
2282 5831 0.322277 AGATGCTGGTCACAAGCTGG 60.322 55.000 5.56 0.00 0.00 4.85
2283 5832 0.803117 CAGATGCTGGTCACAAGCTG 59.197 55.000 5.56 0.00 0.00 4.24
2284 5833 0.959372 GCAGATGCTGGTCACAAGCT 60.959 55.000 5.56 0.00 38.21 3.74
2285 5834 1.239296 TGCAGATGCTGGTCACAAGC 61.239 55.000 0.00 0.00 42.66 4.01
2286 5835 1.132453 CATGCAGATGCTGGTCACAAG 59.868 52.381 6.35 0.00 42.66 3.16
2287 5836 1.170442 CATGCAGATGCTGGTCACAA 58.830 50.000 6.35 0.00 42.66 3.33
2288 5837 0.678684 CCATGCAGATGCTGGTCACA 60.679 55.000 6.35 0.00 42.66 3.58
2289 5838 0.393402 TCCATGCAGATGCTGGTCAC 60.393 55.000 17.25 0.00 42.66 3.67
2290 5839 0.107361 CTCCATGCAGATGCTGGTCA 60.107 55.000 17.25 4.77 42.66 4.02
2291 5840 1.445716 GCTCCATGCAGATGCTGGTC 61.446 60.000 17.25 10.40 42.66 4.02
2292 5841 1.453379 GCTCCATGCAGATGCTGGT 60.453 57.895 17.25 0.00 42.66 4.00
2293 5842 0.752009 AAGCTCCATGCAGATGCTGG 60.752 55.000 13.77 13.77 45.94 4.85
2294 5843 0.663688 GAAGCTCCATGCAGATGCTG 59.336 55.000 6.35 2.31 45.94 4.41
2295 5844 0.547075 AGAAGCTCCATGCAGATGCT 59.453 50.000 6.35 0.00 45.94 3.79
2296 5845 1.334243 GAAGAAGCTCCATGCAGATGC 59.666 52.381 0.00 0.00 45.94 3.91
2297 5846 1.948145 GGAAGAAGCTCCATGCAGATG 59.052 52.381 0.00 0.00 45.94 2.90
2298 5847 1.133853 GGGAAGAAGCTCCATGCAGAT 60.134 52.381 0.00 0.00 45.94 2.90
2299 5848 0.254178 GGGAAGAAGCTCCATGCAGA 59.746 55.000 0.00 0.00 45.94 4.26
2300 5849 0.034767 TGGGAAGAAGCTCCATGCAG 60.035 55.000 0.00 0.00 45.94 4.41
2301 5850 0.627451 ATGGGAAGAAGCTCCATGCA 59.373 50.000 3.18 0.00 45.94 3.96
2302 5851 1.407979 CAATGGGAAGAAGCTCCATGC 59.592 52.381 4.74 0.00 40.75 4.06
2303 5852 1.407979 GCAATGGGAAGAAGCTCCATG 59.592 52.381 4.74 1.81 40.75 3.66
2304 5853 1.687368 GGCAATGGGAAGAAGCTCCAT 60.687 52.381 0.00 0.00 42.52 3.41
2305 5854 0.323725 GGCAATGGGAAGAAGCTCCA 60.324 55.000 0.00 0.00 37.20 3.86
2306 5855 0.323725 TGGCAATGGGAAGAAGCTCC 60.324 55.000 0.00 0.00 34.41 4.70
2307 5856 1.772836 ATGGCAATGGGAAGAAGCTC 58.227 50.000 0.00 0.00 0.00 4.09
2308 5857 2.235402 CAAATGGCAATGGGAAGAAGCT 59.765 45.455 0.00 0.00 0.00 3.74
2309 5858 2.624636 CAAATGGCAATGGGAAGAAGC 58.375 47.619 0.00 0.00 0.00 3.86
2310 5859 2.624636 GCAAATGGCAATGGGAAGAAG 58.375 47.619 0.00 0.00 43.97 2.85
2311 5860 2.766345 GCAAATGGCAATGGGAAGAA 57.234 45.000 0.00 0.00 43.97 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.