Multiple sequence alignment - TraesCS7A01G065400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G065400 chr7A 100.000 4026 0 0 1 4026 32590959 32586934 0.000000e+00 7435.0
1 TraesCS7A01G065400 chr7A 97.512 1608 39 1 1316 2923 255889014 255887408 0.000000e+00 2747.0
2 TraesCS7A01G065400 chr7A 85.669 1584 202 16 1318 2885 88959302 88957728 0.000000e+00 1644.0
3 TraesCS7A01G065400 chr7A 85.615 1585 204 15 1316 2885 722319681 722318106 0.000000e+00 1642.0
4 TraesCS7A01G065400 chr7A 86.185 941 115 10 2053 2980 171878764 171877826 0.000000e+00 1003.0
5 TraesCS7A01G065400 chr7A 83.091 1100 164 17 1800 2885 361795550 361796641 0.000000e+00 981.0
6 TraesCS7A01G065400 chr7A 98.235 170 3 0 3767 3936 32573260 32573091 8.460000e-77 298.0
7 TraesCS7A01G065400 chr7A 98.235 170 3 0 3767 3936 86010163 86009994 8.460000e-77 298.0
8 TraesCS7A01G065400 chr7A 97.802 91 2 0 3936 4026 32531366 32531276 1.500000e-34 158.0
9 TraesCS7A01G065400 chr7A 98.246 57 1 0 3970 4026 32529139 32529083 2.560000e-17 100.0
10 TraesCS7A01G065400 chr7A 82.558 86 15 0 3677 3762 26061824 26061909 4.310000e-10 76.8
11 TraesCS7A01G065400 chr1A 94.697 2376 100 9 1316 3676 184936080 184933716 0.000000e+00 3666.0
12 TraesCS7A01G065400 chr1A 90.882 1020 64 9 1 1008 157504778 157505780 0.000000e+00 1341.0
13 TraesCS7A01G065400 chr1A 94.361 266 15 0 986 1251 184938583 184938318 3.750000e-110 409.0
14 TraesCS7A01G065400 chr1A 98.235 170 3 0 3767 3936 39690465 39690296 8.460000e-77 298.0
15 TraesCS7A01G065400 chr1A 98.235 170 3 0 3767 3936 78192766 78192597 8.460000e-77 298.0
16 TraesCS7A01G065400 chr1A 83.436 163 24 3 3456 3617 172182241 172182401 9.020000e-32 148.0
17 TraesCS7A01G065400 chr7B 94.489 2377 106 10 1316 3678 574511234 574513599 0.000000e+00 3640.0
18 TraesCS7A01G065400 chr6B 94.281 2378 105 11 1316 3677 610806224 610808586 0.000000e+00 3609.0
19 TraesCS7A01G065400 chr6B 82.671 1333 196 27 1778 3090 103963362 103964679 0.000000e+00 1149.0
20 TraesCS7A01G065400 chr6B 94.737 266 14 0 986 1251 610803742 610804007 8.050000e-112 414.0
21 TraesCS7A01G065400 chr6B 93.644 236 15 0 986 1221 718367510 718367745 1.780000e-93 353.0
22 TraesCS7A01G065400 chr5A 86.988 1660 198 13 1316 2962 663074435 663076089 0.000000e+00 1853.0
23 TraesCS7A01G065400 chr5A 93.327 989 54 6 1 985 28766527 28767507 0.000000e+00 1450.0
24 TraesCS7A01G065400 chr5A 89.293 1018 79 16 1 1009 381985092 381984096 0.000000e+00 1249.0
25 TraesCS7A01G065400 chr5A 98.235 170 3 0 3767 3936 372064091 372064260 8.460000e-77 298.0
26 TraesCS7A01G065400 chr5A 96.111 180 7 0 3757 3936 700493781 700493960 1.090000e-75 294.0
27 TraesCS7A01G065400 chrUn 93.005 1258 65 7 2437 3680 259654538 259653290 0.000000e+00 1814.0
28 TraesCS7A01G065400 chrUn 96.580 614 21 0 1316 1929 445251356 445251969 0.000000e+00 1018.0
29 TraesCS7A01G065400 chrUn 86.079 941 116 10 2053 2980 386814551 386813613 0.000000e+00 998.0
30 TraesCS7A01G065400 chrUn 89.928 417 22 7 3009 3411 477615150 477614740 1.660000e-143 520.0
31 TraesCS7A01G065400 chrUn 94.737 266 14 0 986 1251 340331090 340331355 8.050000e-112 414.0
32 TraesCS7A01G065400 chrUn 98.235 170 3 0 3767 3936 74581837 74582006 8.460000e-77 298.0
33 TraesCS7A01G065400 chr3A 93.820 987 52 6 1 985 567076231 567075252 0.000000e+00 1476.0
34 TraesCS7A01G065400 chr3A 92.922 989 64 5 1 985 517318755 517319741 0.000000e+00 1434.0
35 TraesCS7A01G065400 chr3A 84.390 1057 146 15 1333 2376 47784256 47785306 0.000000e+00 1020.0
36 TraesCS7A01G065400 chr3A 82.983 1046 111 43 1 1009 447353992 447352977 0.000000e+00 883.0
37 TraesCS7A01G065400 chr3A 82.002 1039 114 35 1 987 202562457 202563474 0.000000e+00 815.0
38 TraesCS7A01G065400 chr6A 93.347 992 57 8 1 985 351976983 351975994 0.000000e+00 1458.0
39 TraesCS7A01G065400 chr6A 90.402 1021 67 12 1 1000 518318698 518319708 0.000000e+00 1314.0
40 TraesCS7A01G065400 chr6A 85.479 1033 88 31 9 1008 552410186 552411189 0.000000e+00 1020.0
41 TraesCS7A01G065400 chr6A 98.235 170 3 0 3767 3936 187935873 187936042 8.460000e-77 298.0
42 TraesCS7A01G065400 chr2A 93.353 993 53 9 1 986 376007136 376008122 0.000000e+00 1456.0
43 TraesCS7A01G065400 chr2A 93.166 995 55 8 1 985 676579792 676580783 0.000000e+00 1448.0
44 TraesCS7A01G065400 chr2A 92.879 997 55 10 1 986 10534403 10535394 0.000000e+00 1434.0
45 TraesCS7A01G065400 chr2A 88.435 1029 81 18 1 1006 473491383 473492396 0.000000e+00 1206.0
46 TraesCS7A01G065400 chr4A 93.239 991 59 5 1 985 214268062 214269050 0.000000e+00 1452.0
47 TraesCS7A01G065400 chr4A 93.145 992 55 11 1 985 640421025 640420040 0.000000e+00 1443.0
48 TraesCS7A01G065400 chr4A 98.824 170 2 0 3767 3936 454885030 454884861 1.820000e-78 303.0
49 TraesCS7A01G065400 chr7D 88.646 229 14 7 768 985 72214230 72214457 6.630000e-68 268.0
50 TraesCS7A01G065400 chr7D 98.901 91 1 0 3936 4026 32332808 32332718 3.220000e-36 163.0
51 TraesCS7A01G065400 chr7D 78.448 232 35 7 768 987 316897304 316897532 1.950000e-28 137.0
52 TraesCS7A01G065400 chr7D 98.246 57 1 0 3970 4026 32330554 32330498 2.560000e-17 100.0
53 TraesCS7A01G065400 chr7D 89.655 58 6 0 3969 4026 12546638 12546695 1.550000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G065400 chr7A 32586934 32590959 4025 True 7435.0 7435 100.000 1 4026 1 chr7A.!!$R2 4025
1 TraesCS7A01G065400 chr7A 255887408 255889014 1606 True 2747.0 2747 97.512 1316 2923 1 chr7A.!!$R6 1607
2 TraesCS7A01G065400 chr7A 88957728 88959302 1574 True 1644.0 1644 85.669 1318 2885 1 chr7A.!!$R4 1567
3 TraesCS7A01G065400 chr7A 722318106 722319681 1575 True 1642.0 1642 85.615 1316 2885 1 chr7A.!!$R7 1569
4 TraesCS7A01G065400 chr7A 171877826 171878764 938 True 1003.0 1003 86.185 2053 2980 1 chr7A.!!$R5 927
5 TraesCS7A01G065400 chr7A 361795550 361796641 1091 False 981.0 981 83.091 1800 2885 1 chr7A.!!$F2 1085
6 TraesCS7A01G065400 chr1A 184933716 184938583 4867 True 2037.5 3666 94.529 986 3676 2 chr1A.!!$R3 2690
7 TraesCS7A01G065400 chr1A 157504778 157505780 1002 False 1341.0 1341 90.882 1 1008 1 chr1A.!!$F1 1007
8 TraesCS7A01G065400 chr7B 574511234 574513599 2365 False 3640.0 3640 94.489 1316 3678 1 chr7B.!!$F1 2362
9 TraesCS7A01G065400 chr6B 610803742 610808586 4844 False 2011.5 3609 94.509 986 3677 2 chr6B.!!$F3 2691
10 TraesCS7A01G065400 chr6B 103963362 103964679 1317 False 1149.0 1149 82.671 1778 3090 1 chr6B.!!$F1 1312
11 TraesCS7A01G065400 chr5A 663074435 663076089 1654 False 1853.0 1853 86.988 1316 2962 1 chr5A.!!$F3 1646
12 TraesCS7A01G065400 chr5A 28766527 28767507 980 False 1450.0 1450 93.327 1 985 1 chr5A.!!$F1 984
13 TraesCS7A01G065400 chr5A 381984096 381985092 996 True 1249.0 1249 89.293 1 1009 1 chr5A.!!$R1 1008
14 TraesCS7A01G065400 chrUn 259653290 259654538 1248 True 1814.0 1814 93.005 2437 3680 1 chrUn.!!$R1 1243
15 TraesCS7A01G065400 chrUn 445251356 445251969 613 False 1018.0 1018 96.580 1316 1929 1 chrUn.!!$F3 613
16 TraesCS7A01G065400 chrUn 386813613 386814551 938 True 998.0 998 86.079 2053 2980 1 chrUn.!!$R2 927
17 TraesCS7A01G065400 chr3A 567075252 567076231 979 True 1476.0 1476 93.820 1 985 1 chr3A.!!$R2 984
18 TraesCS7A01G065400 chr3A 517318755 517319741 986 False 1434.0 1434 92.922 1 985 1 chr3A.!!$F3 984
19 TraesCS7A01G065400 chr3A 47784256 47785306 1050 False 1020.0 1020 84.390 1333 2376 1 chr3A.!!$F1 1043
20 TraesCS7A01G065400 chr3A 447352977 447353992 1015 True 883.0 883 82.983 1 1009 1 chr3A.!!$R1 1008
21 TraesCS7A01G065400 chr3A 202562457 202563474 1017 False 815.0 815 82.002 1 987 1 chr3A.!!$F2 986
22 TraesCS7A01G065400 chr6A 351975994 351976983 989 True 1458.0 1458 93.347 1 985 1 chr6A.!!$R1 984
23 TraesCS7A01G065400 chr6A 518318698 518319708 1010 False 1314.0 1314 90.402 1 1000 1 chr6A.!!$F2 999
24 TraesCS7A01G065400 chr6A 552410186 552411189 1003 False 1020.0 1020 85.479 9 1008 1 chr6A.!!$F3 999
25 TraesCS7A01G065400 chr2A 376007136 376008122 986 False 1456.0 1456 93.353 1 986 1 chr2A.!!$F2 985
26 TraesCS7A01G065400 chr2A 676579792 676580783 991 False 1448.0 1448 93.166 1 985 1 chr2A.!!$F4 984
27 TraesCS7A01G065400 chr2A 10534403 10535394 991 False 1434.0 1434 92.879 1 986 1 chr2A.!!$F1 985
28 TraesCS7A01G065400 chr2A 473491383 473492396 1013 False 1206.0 1206 88.435 1 1006 1 chr2A.!!$F3 1005
29 TraesCS7A01G065400 chr4A 214268062 214269050 988 False 1452.0 1452 93.239 1 985 1 chr4A.!!$F1 984
30 TraesCS7A01G065400 chr4A 640420040 640421025 985 True 1443.0 1443 93.145 1 985 1 chr4A.!!$R2 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 154 0.165944 GAACCCGCAAGTTGATCACG 59.834 55.000 7.16 0.0 0.00 4.35 F
505 535 1.303282 GGCCACCGGAGAAGGATTT 59.697 57.895 9.46 0.0 34.73 2.17 F
2048 4363 0.171903 CTAAAGTGCTGCCACATGCC 59.828 55.000 0.00 0.0 44.53 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 4225 0.395862 TCTCCTCCTCCGATGTCCAC 60.396 60.0 0.0 0.0 0.00 4.02 R
2491 4825 0.035458 CCGGATGGGCTTGTATCCTC 59.965 60.0 0.0 0.0 40.55 3.71 R
3559 5917 0.107081 CACGTTTGGTGTAGGGTGGA 59.893 55.0 0.0 0.0 41.89 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 5.888724 TCAACCAACACATAGAACCTCAAAA 59.111 36.000 0.00 0.00 0.00 2.44
96 98 2.325761 CGGAGAATCACGACGAAAACT 58.674 47.619 0.00 0.00 36.25 2.66
148 154 0.165944 GAACCCGCAAGTTGATCACG 59.834 55.000 7.16 0.00 0.00 4.35
210 218 2.009051 CACAGATACGCATGGCAAGAA 58.991 47.619 0.00 0.00 0.00 2.52
384 408 4.000325 TCAAGAACACGAGAGAGAGAGAG 59.000 47.826 0.00 0.00 0.00 3.20
385 409 3.973206 AGAACACGAGAGAGAGAGAGA 57.027 47.619 0.00 0.00 0.00 3.10
389 413 3.096852 ACACGAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
390 414 3.131223 ACACGAGAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
391 415 3.381590 CACGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
415 445 7.725397 AGAGAGAGAGATCAAACACATAGCTAT 59.275 37.037 0.00 0.00 0.00 2.97
505 535 1.303282 GGCCACCGGAGAAGGATTT 59.697 57.895 9.46 0.00 34.73 2.17
826 898 5.221165 GGACTCCGTTTGATTTTCCTTTTCA 60.221 40.000 0.00 0.00 0.00 2.69
994 1098 6.459710 CGTTGGAGATGTATCACTGCTACTTA 60.460 42.308 0.00 0.00 31.28 2.24
1042 1146 3.054139 AGGATGTTTGCTTCATGCTCCTA 60.054 43.478 5.07 0.00 39.14 2.94
1093 1197 5.825679 ACAATTAAGTGCCAACTGACAACTA 59.174 36.000 2.17 0.00 36.51 2.24
1109 1213 6.118852 TGACAACTATAAGTGGCATATGCAA 58.881 36.000 28.07 16.04 44.36 4.08
1151 1255 9.882996 AACATATAAGCATATTTCATTGACACG 57.117 29.630 0.00 0.00 0.00 4.49
1197 1301 7.272731 CACACAAACAAATCTTGATAGCTGATG 59.727 37.037 0.00 0.00 0.00 3.07
1221 1325 7.624549 TGCAGATTAGATGTCTTTTAAGTCCT 58.375 34.615 0.00 0.00 0.00 3.85
1252 1356 8.910351 ATATGATTCTTGTAGCTTTTCCCTAC 57.090 34.615 0.00 0.00 36.55 3.18
1253 1357 5.497474 TGATTCTTGTAGCTTTTCCCTACC 58.503 41.667 0.00 0.00 35.44 3.18
1254 1358 5.250774 TGATTCTTGTAGCTTTTCCCTACCT 59.749 40.000 0.00 0.00 35.44 3.08
1255 1359 6.442564 TGATTCTTGTAGCTTTTCCCTACCTA 59.557 38.462 0.00 0.00 35.44 3.08
1256 1360 6.886178 TTCTTGTAGCTTTTCCCTACCTAT 57.114 37.500 0.00 0.00 35.44 2.57
1257 1361 6.886178 TCTTGTAGCTTTTCCCTACCTATT 57.114 37.500 0.00 0.00 35.44 1.73
1258 1362 6.885922 TCTTGTAGCTTTTCCCTACCTATTC 58.114 40.000 0.00 0.00 35.44 1.75
1259 1363 5.625568 TGTAGCTTTTCCCTACCTATTCC 57.374 43.478 0.00 0.00 35.44 3.01
1260 1364 4.411212 TGTAGCTTTTCCCTACCTATTCCC 59.589 45.833 0.00 0.00 35.44 3.97
1261 1365 3.749036 AGCTTTTCCCTACCTATTCCCT 58.251 45.455 0.00 0.00 0.00 4.20
1262 1366 4.119918 AGCTTTTCCCTACCTATTCCCTT 58.880 43.478 0.00 0.00 0.00 3.95
1263 1367 4.544559 AGCTTTTCCCTACCTATTCCCTTT 59.455 41.667 0.00 0.00 0.00 3.11
1264 1368 4.888239 GCTTTTCCCTACCTATTCCCTTTC 59.112 45.833 0.00 0.00 0.00 2.62
1265 1369 5.340110 GCTTTTCCCTACCTATTCCCTTTCT 60.340 44.000 0.00 0.00 0.00 2.52
1266 1370 6.126565 GCTTTTCCCTACCTATTCCCTTTCTA 60.127 42.308 0.00 0.00 0.00 2.10
1267 1371 7.447510 TTTTCCCTACCTATTCCCTTTCTAG 57.552 40.000 0.00 0.00 0.00 2.43
1268 1372 5.763239 TCCCTACCTATTCCCTTTCTAGT 57.237 43.478 0.00 0.00 0.00 2.57
1269 1373 6.114151 TCCCTACCTATTCCCTTTCTAGTT 57.886 41.667 0.00 0.00 0.00 2.24
1270 1374 6.518534 TCCCTACCTATTCCCTTTCTAGTTT 58.481 40.000 0.00 0.00 0.00 2.66
1271 1375 6.614496 TCCCTACCTATTCCCTTTCTAGTTTC 59.386 42.308 0.00 0.00 0.00 2.78
1272 1376 6.386050 CCCTACCTATTCCCTTTCTAGTTTCA 59.614 42.308 0.00 0.00 0.00 2.69
1273 1377 7.072581 CCCTACCTATTCCCTTTCTAGTTTCAT 59.927 40.741 0.00 0.00 0.00 2.57
1274 1378 8.495260 CCTACCTATTCCCTTTCTAGTTTCATT 58.505 37.037 0.00 0.00 0.00 2.57
1275 1379 9.907229 CTACCTATTCCCTTTCTAGTTTCATTT 57.093 33.333 0.00 0.00 0.00 2.32
1277 1381 9.601810 ACCTATTCCCTTTCTAGTTTCATTTTT 57.398 29.630 0.00 0.00 0.00 1.94
1281 1385 7.761038 TCCCTTTCTAGTTTCATTTTTCTCC 57.239 36.000 0.00 0.00 0.00 3.71
1282 1386 6.719829 TCCCTTTCTAGTTTCATTTTTCTCCC 59.280 38.462 0.00 0.00 0.00 4.30
1283 1387 6.721668 CCCTTTCTAGTTTCATTTTTCTCCCT 59.278 38.462 0.00 0.00 0.00 4.20
1284 1388 7.233553 CCCTTTCTAGTTTCATTTTTCTCCCTT 59.766 37.037 0.00 0.00 0.00 3.95
1285 1389 9.297037 CCTTTCTAGTTTCATTTTTCTCCCTTA 57.703 33.333 0.00 0.00 0.00 2.69
1307 1411 9.994432 CCTTATCATGTCTTGTTTGATTAAGTC 57.006 33.333 0.00 0.00 32.58 3.01
1336 3646 5.183904 GGTACTTTTGGATTGCTCAAGATGT 59.816 40.000 0.00 0.00 0.00 3.06
1404 3714 7.340232 ACACAAGTTGATATAATTCTGGCATGT 59.660 33.333 10.54 0.00 0.00 3.21
1537 3847 1.628340 TGTCCACCGAAACATCATCCT 59.372 47.619 0.00 0.00 0.00 3.24
1888 4203 4.462483 GTCAAAGGAGGGCAAATTGACATA 59.538 41.667 0.00 0.00 45.63 2.29
1917 4232 2.894126 AGAGACAAGAGAACGTGGACAT 59.106 45.455 0.00 0.00 0.00 3.06
2048 4363 0.171903 CTAAAGTGCTGCCACATGCC 59.828 55.000 0.00 0.00 44.53 4.40
2159 4474 2.314247 TGGGTTTGGATGGGATGATGAA 59.686 45.455 0.00 0.00 0.00 2.57
2450 4784 4.256920 GGATCAACAGTAGATGCACAACT 58.743 43.478 0.00 0.00 34.43 3.16
2738 5077 5.533112 TCTCCAGAATCTTAAGGGTCTCAT 58.467 41.667 1.85 0.00 0.00 2.90
2944 5288 8.352942 CAGGACTACTCATTTGCTTTTAAACTT 58.647 33.333 0.00 0.00 0.00 2.66
2969 5313 4.887071 TCAGTAACAACATTTGGTGCTTCT 59.113 37.500 0.00 0.00 40.56 2.85
3057 5401 8.398878 TGAATGATTGATTCATGCTAATGCTA 57.601 30.769 0.00 0.00 44.65 3.49
3093 5437 5.627499 TTTTCATCTCTTTCATCAACCGG 57.373 39.130 0.00 0.00 0.00 5.28
3133 5477 3.777106 TGTGTTGCTCTCATTTCCTCT 57.223 42.857 0.00 0.00 0.00 3.69
3144 5488 5.962433 TCTCATTTCCTCTTACCTACAACG 58.038 41.667 0.00 0.00 0.00 4.10
3145 5489 5.080969 TCATTTCCTCTTACCTACAACGG 57.919 43.478 0.00 0.00 0.00 4.44
3161 5505 7.147794 ACCTACAACGGTGATCTTATGACATTA 60.148 37.037 7.88 0.00 35.52 1.90
3285 5643 2.632512 GGAAGATTGGCTTTTGGGTCAA 59.367 45.455 0.00 0.00 36.83 3.18
3299 5657 3.189606 TGGGTCAACACCTGGATAATCT 58.810 45.455 0.00 0.00 43.22 2.40
3309 5667 2.812591 CCTGGATAATCTCAGCATGTGC 59.187 50.000 0.00 0.00 42.49 4.57
3348 5706 6.399639 TTTTTCCTTAGTTAGTTTGCCCAG 57.600 37.500 0.00 0.00 0.00 4.45
3349 5707 4.717279 TTCCTTAGTTAGTTTGCCCAGT 57.283 40.909 0.00 0.00 0.00 4.00
3359 5717 7.433680 AGTTAGTTTGCCCAGTTTTTAGATTG 58.566 34.615 0.00 0.00 0.00 2.67
3367 5725 7.153985 TGCCCAGTTTTTAGATTGAATTTCAG 58.846 34.615 0.00 0.00 0.00 3.02
3370 5728 9.546428 CCCAGTTTTTAGATTGAATTTCAGTTT 57.454 29.630 0.00 0.00 0.00 2.66
3382 5740 7.935338 TGAATTTCAGTTTCTCATTTTGAGC 57.065 32.000 0.00 0.00 43.95 4.26
3434 5792 5.104776 TGCTCACTTTCTATACTGCCAATCT 60.105 40.000 0.00 0.00 0.00 2.40
3478 5836 8.585881 TCAGTTCAGTTTCTGTAGCTACTAAAT 58.414 33.333 23.84 12.02 33.89 1.40
3479 5837 8.651588 CAGTTCAGTTTCTGTAGCTACTAAATG 58.348 37.037 23.84 20.95 32.61 2.32
3509 5867 1.760405 AACTCCCATTCCAAGACCCT 58.240 50.000 0.00 0.00 0.00 4.34
3544 5902 8.406297 ACAGAGGAAGTTAATTTTCTGTCAAAC 58.594 33.333 10.60 0.00 39.77 2.93
3552 5910 2.702592 TTTCTGTCAAACTCCCACGT 57.297 45.000 0.00 0.00 0.00 4.49
3559 5917 6.469410 TCTGTCAAACTCCCACGTATAATTT 58.531 36.000 0.00 0.00 0.00 1.82
3620 5978 5.114780 CACTTCTCATGTCTAATCCCACAG 58.885 45.833 0.00 0.00 0.00 3.66
3631 5989 1.224003 ATCCCACAGCCAATTCCCCT 61.224 55.000 0.00 0.00 0.00 4.79
3644 6002 5.510690 GCCAATTCCCCTTTAATAATTCCCG 60.511 44.000 0.00 0.00 0.00 5.14
3670 6028 3.252458 CCTTTCCCTCAAACTACCAAACG 59.748 47.826 0.00 0.00 0.00 3.60
3680 6038 0.719465 CTACCAAACGCGCTGTAAGG 59.281 55.000 5.73 12.60 0.00 2.69
3681 6039 0.033781 TACCAAACGCGCTGTAAGGT 59.966 50.000 21.97 21.97 40.04 3.50
3682 6040 0.816421 ACCAAACGCGCTGTAAGGTT 60.816 50.000 5.73 0.00 35.08 3.50
3683 6041 0.309612 CCAAACGCGCTGTAAGGTTT 59.690 50.000 5.73 4.27 33.19 3.27
3684 6042 1.268845 CCAAACGCGCTGTAAGGTTTT 60.269 47.619 5.73 0.00 30.73 2.43
3685 6043 2.031857 CCAAACGCGCTGTAAGGTTTTA 60.032 45.455 5.73 0.00 30.73 1.52
3686 6044 3.548415 CCAAACGCGCTGTAAGGTTTTAA 60.548 43.478 5.73 0.00 30.73 1.52
3687 6045 3.967203 AACGCGCTGTAAGGTTTTAAA 57.033 38.095 5.73 0.00 0.00 1.52
3688 6046 4.492791 AACGCGCTGTAAGGTTTTAAAT 57.507 36.364 5.73 0.00 0.00 1.40
3689 6047 5.610235 AACGCGCTGTAAGGTTTTAAATA 57.390 34.783 5.73 0.00 0.00 1.40
3690 6048 5.212589 ACGCGCTGTAAGGTTTTAAATAG 57.787 39.130 5.73 0.00 0.00 1.73
3691 6049 4.931002 ACGCGCTGTAAGGTTTTAAATAGA 59.069 37.500 5.73 0.00 0.00 1.98
3692 6050 5.583457 ACGCGCTGTAAGGTTTTAAATAGAT 59.417 36.000 5.73 0.00 0.00 1.98
3693 6051 6.093082 ACGCGCTGTAAGGTTTTAAATAGATT 59.907 34.615 5.73 0.00 0.00 2.40
3694 6052 6.410914 CGCGCTGTAAGGTTTTAAATAGATTG 59.589 38.462 5.56 0.00 0.00 2.67
3695 6053 6.691388 GCGCTGTAAGGTTTTAAATAGATTGG 59.309 38.462 0.00 0.00 0.00 3.16
3696 6054 7.193595 CGCTGTAAGGTTTTAAATAGATTGGG 58.806 38.462 0.00 0.00 0.00 4.12
3697 6055 7.066525 CGCTGTAAGGTTTTAAATAGATTGGGA 59.933 37.037 0.00 0.00 0.00 4.37
3698 6056 8.914011 GCTGTAAGGTTTTAAATAGATTGGGAT 58.086 33.333 0.00 0.00 0.00 3.85
3702 6060 8.909423 AAGGTTTTAAATAGATTGGGATTGGA 57.091 30.769 0.00 0.00 0.00 3.53
3703 6061 8.909423 AGGTTTTAAATAGATTGGGATTGGAA 57.091 30.769 0.00 0.00 0.00 3.53
3704 6062 9.332713 AGGTTTTAAATAGATTGGGATTGGAAA 57.667 29.630 0.00 0.00 0.00 3.13
3705 6063 9.599866 GGTTTTAAATAGATTGGGATTGGAAAG 57.400 33.333 0.00 0.00 0.00 2.62
3710 6068 6.796785 ATAGATTGGGATTGGAAAGTTTGG 57.203 37.500 0.00 0.00 0.00 3.28
3711 6069 4.492646 AGATTGGGATTGGAAAGTTTGGT 58.507 39.130 0.00 0.00 0.00 3.67
3712 6070 4.284234 AGATTGGGATTGGAAAGTTTGGTG 59.716 41.667 0.00 0.00 0.00 4.17
3713 6071 3.039252 TGGGATTGGAAAGTTTGGTGT 57.961 42.857 0.00 0.00 0.00 4.16
3714 6072 2.697751 TGGGATTGGAAAGTTTGGTGTG 59.302 45.455 0.00 0.00 0.00 3.82
3715 6073 2.547855 GGGATTGGAAAGTTTGGTGTGC 60.548 50.000 0.00 0.00 0.00 4.57
3716 6074 2.365293 GGATTGGAAAGTTTGGTGTGCT 59.635 45.455 0.00 0.00 0.00 4.40
3717 6075 2.957491 TTGGAAAGTTTGGTGTGCTG 57.043 45.000 0.00 0.00 0.00 4.41
3718 6076 2.136298 TGGAAAGTTTGGTGTGCTGA 57.864 45.000 0.00 0.00 0.00 4.26
3719 6077 2.665165 TGGAAAGTTTGGTGTGCTGAT 58.335 42.857 0.00 0.00 0.00 2.90
3720 6078 3.030291 TGGAAAGTTTGGTGTGCTGATT 58.970 40.909 0.00 0.00 0.00 2.57
3721 6079 3.450457 TGGAAAGTTTGGTGTGCTGATTT 59.550 39.130 0.00 0.00 0.00 2.17
3722 6080 4.051237 GGAAAGTTTGGTGTGCTGATTTC 58.949 43.478 0.00 0.00 0.00 2.17
3723 6081 4.441356 GGAAAGTTTGGTGTGCTGATTTCA 60.441 41.667 0.00 0.00 0.00 2.69
3724 6082 3.996150 AGTTTGGTGTGCTGATTTCAG 57.004 42.857 3.13 3.13 46.40 3.02
3725 6083 3.554934 AGTTTGGTGTGCTGATTTCAGA 58.445 40.909 11.70 0.00 46.59 3.27
3726 6084 3.567164 AGTTTGGTGTGCTGATTTCAGAG 59.433 43.478 11.70 0.00 46.59 3.35
3727 6085 3.490439 TTGGTGTGCTGATTTCAGAGA 57.510 42.857 11.70 0.00 46.59 3.10
3728 6086 3.708403 TGGTGTGCTGATTTCAGAGAT 57.292 42.857 11.70 0.00 46.59 2.75
3729 6087 4.025040 TGGTGTGCTGATTTCAGAGATT 57.975 40.909 11.70 0.00 46.59 2.40
3730 6088 5.164620 TGGTGTGCTGATTTCAGAGATTA 57.835 39.130 11.70 0.00 46.59 1.75
3731 6089 5.181009 TGGTGTGCTGATTTCAGAGATTAG 58.819 41.667 11.70 0.00 46.59 1.73
3732 6090 5.046376 TGGTGTGCTGATTTCAGAGATTAGA 60.046 40.000 11.70 0.00 46.59 2.10
3733 6091 5.877012 GGTGTGCTGATTTCAGAGATTAGAA 59.123 40.000 11.70 0.00 46.59 2.10
3734 6092 6.036953 GGTGTGCTGATTTCAGAGATTAGAAG 59.963 42.308 11.70 0.00 46.59 2.85
3735 6093 6.593382 GTGTGCTGATTTCAGAGATTAGAAGT 59.407 38.462 11.70 0.00 46.59 3.01
3736 6094 7.118971 GTGTGCTGATTTCAGAGATTAGAAGTT 59.881 37.037 11.70 0.00 46.59 2.66
3737 6095 7.663081 TGTGCTGATTTCAGAGATTAGAAGTTT 59.337 33.333 11.70 0.00 46.59 2.66
3738 6096 9.155975 GTGCTGATTTCAGAGATTAGAAGTTTA 57.844 33.333 11.70 0.00 46.59 2.01
3739 6097 9.376075 TGCTGATTTCAGAGATTAGAAGTTTAG 57.624 33.333 11.70 0.00 46.59 1.85
3740 6098 8.825745 GCTGATTTCAGAGATTAGAAGTTTAGG 58.174 37.037 11.70 0.00 46.59 2.69
3741 6099 8.723942 TGATTTCAGAGATTAGAAGTTTAGGC 57.276 34.615 0.00 0.00 0.00 3.93
3742 6100 8.543774 TGATTTCAGAGATTAGAAGTTTAGGCT 58.456 33.333 0.00 0.00 0.00 4.58
3743 6101 9.389755 GATTTCAGAGATTAGAAGTTTAGGCTT 57.610 33.333 0.00 0.00 0.00 4.35
3744 6102 9.746457 ATTTCAGAGATTAGAAGTTTAGGCTTT 57.254 29.630 0.00 0.00 0.00 3.51
3746 6104 9.877178 TTCAGAGATTAGAAGTTTAGGCTTTAG 57.123 33.333 0.00 0.00 0.00 1.85
3747 6105 9.036980 TCAGAGATTAGAAGTTTAGGCTTTAGT 57.963 33.333 0.00 0.00 0.00 2.24
3748 6106 9.660180 CAGAGATTAGAAGTTTAGGCTTTAGTT 57.340 33.333 0.00 0.00 0.00 2.24
3757 6115 9.378597 GAAGTTTAGGCTTTAGTTTAGTTTTCG 57.621 33.333 0.00 0.00 0.00 3.46
3758 6116 8.442632 AGTTTAGGCTTTAGTTTAGTTTTCGT 57.557 30.769 0.00 0.00 0.00 3.85
3759 6117 8.554528 AGTTTAGGCTTTAGTTTAGTTTTCGTC 58.445 33.333 0.00 0.00 0.00 4.20
3760 6118 8.554528 GTTTAGGCTTTAGTTTAGTTTTCGTCT 58.445 33.333 0.00 0.00 0.00 4.18
3761 6119 9.762933 TTTAGGCTTTAGTTTAGTTTTCGTCTA 57.237 29.630 0.00 0.00 0.00 2.59
3762 6120 9.762933 TTAGGCTTTAGTTTAGTTTTCGTCTAA 57.237 29.630 0.00 0.00 0.00 2.10
3763 6121 8.843885 AGGCTTTAGTTTAGTTTTCGTCTAAT 57.156 30.769 0.00 0.00 0.00 1.73
3764 6122 9.933723 AGGCTTTAGTTTAGTTTTCGTCTAATA 57.066 29.630 0.00 0.00 0.00 0.98
3776 6134 9.768662 AGTTTTCGTCTAATAGTTTTGTTAGGA 57.231 29.630 0.00 0.00 31.16 2.94
3781 6139 8.662141 TCGTCTAATAGTTTTGTTAGGATTTGC 58.338 33.333 0.00 0.00 31.16 3.68
3782 6140 8.665685 CGTCTAATAGTTTTGTTAGGATTTGCT 58.334 33.333 0.00 0.00 31.16 3.91
3785 6143 7.889589 AATAGTTTTGTTAGGATTTGCTTGC 57.110 32.000 0.00 0.00 0.00 4.01
3786 6144 5.535753 AGTTTTGTTAGGATTTGCTTGCT 57.464 34.783 0.00 0.00 0.00 3.91
3787 6145 5.291971 AGTTTTGTTAGGATTTGCTTGCTG 58.708 37.500 0.00 0.00 0.00 4.41
3788 6146 4.935352 TTTGTTAGGATTTGCTTGCTGT 57.065 36.364 0.00 0.00 0.00 4.40
3789 6147 4.935352 TTGTTAGGATTTGCTTGCTGTT 57.065 36.364 0.00 0.00 0.00 3.16
3790 6148 6.398234 TTTGTTAGGATTTGCTTGCTGTTA 57.602 33.333 0.00 0.00 0.00 2.41
3791 6149 6.588719 TTGTTAGGATTTGCTTGCTGTTAT 57.411 33.333 0.00 0.00 0.00 1.89
3792 6150 6.588719 TGTTAGGATTTGCTTGCTGTTATT 57.411 33.333 0.00 0.00 0.00 1.40
3793 6151 6.991938 TGTTAGGATTTGCTTGCTGTTATTT 58.008 32.000 0.00 0.00 0.00 1.40
3794 6152 8.116651 TGTTAGGATTTGCTTGCTGTTATTTA 57.883 30.769 0.00 0.00 0.00 1.40
3795 6153 8.243426 TGTTAGGATTTGCTTGCTGTTATTTAG 58.757 33.333 0.00 0.00 0.00 1.85
3796 6154 8.458843 GTTAGGATTTGCTTGCTGTTATTTAGA 58.541 33.333 0.00 0.00 0.00 2.10
3797 6155 7.466746 AGGATTTGCTTGCTGTTATTTAGAA 57.533 32.000 0.00 0.00 0.00 2.10
3798 6156 7.315890 AGGATTTGCTTGCTGTTATTTAGAAC 58.684 34.615 0.00 0.00 0.00 3.01
3799 6157 7.039784 AGGATTTGCTTGCTGTTATTTAGAACA 60.040 33.333 0.00 0.00 36.98 3.18
3800 6158 7.598493 GGATTTGCTTGCTGTTATTTAGAACAA 59.402 33.333 0.00 0.00 38.80 2.83
3801 6159 9.143631 GATTTGCTTGCTGTTATTTAGAACAAT 57.856 29.630 0.00 0.00 38.80 2.71
3802 6160 7.872163 TTGCTTGCTGTTATTTAGAACAATG 57.128 32.000 0.00 0.00 38.80 2.82
3803 6161 6.980593 TGCTTGCTGTTATTTAGAACAATGT 58.019 32.000 0.00 0.00 38.80 2.71
3804 6162 7.432869 TGCTTGCTGTTATTTAGAACAATGTT 58.567 30.769 0.00 0.00 38.80 2.71
3805 6163 7.925483 TGCTTGCTGTTATTTAGAACAATGTTT 59.075 29.630 0.00 0.00 38.80 2.83
3806 6164 8.764287 GCTTGCTGTTATTTAGAACAATGTTTT 58.236 29.630 0.00 0.00 38.80 2.43
3808 6166 8.071122 TGCTGTTATTTAGAACAATGTTTTGC 57.929 30.769 0.00 0.00 38.80 3.68
3809 6167 7.708322 TGCTGTTATTTAGAACAATGTTTTGCA 59.292 29.630 0.00 0.00 38.80 4.08
3810 6168 8.711457 GCTGTTATTTAGAACAATGTTTTGCAT 58.289 29.630 0.00 0.00 38.80 3.96
3841 6199 8.652810 ATTTCAATAAAAGTGGCATTGATAGC 57.347 30.769 0.00 0.00 38.21 2.97
3853 6211 5.302357 GCATTGATAGCCTTTACTATGCC 57.698 43.478 0.00 0.00 36.25 4.40
3854 6212 5.006386 GCATTGATAGCCTTTACTATGCCT 58.994 41.667 0.00 0.00 36.25 4.75
3855 6213 6.173339 GCATTGATAGCCTTTACTATGCCTA 58.827 40.000 0.00 0.00 36.25 3.93
3856 6214 6.825721 GCATTGATAGCCTTTACTATGCCTAT 59.174 38.462 0.00 0.00 36.25 2.57
3857 6215 7.201679 GCATTGATAGCCTTTACTATGCCTATG 60.202 40.741 0.00 0.00 36.25 2.23
3858 6216 6.935240 TGATAGCCTTTACTATGCCTATGT 57.065 37.500 0.00 0.00 32.95 2.29
3859 6217 7.316393 TGATAGCCTTTACTATGCCTATGTT 57.684 36.000 0.00 0.00 32.95 2.71
3860 6218 8.430573 TGATAGCCTTTACTATGCCTATGTTA 57.569 34.615 0.00 0.00 32.95 2.41
3861 6219 8.311836 TGATAGCCTTTACTATGCCTATGTTAC 58.688 37.037 0.00 0.00 32.95 2.50
3862 6220 6.494666 AGCCTTTACTATGCCTATGTTACA 57.505 37.500 0.00 0.00 0.00 2.41
3863 6221 6.895782 AGCCTTTACTATGCCTATGTTACAA 58.104 36.000 0.00 0.00 0.00 2.41
3864 6222 6.992715 AGCCTTTACTATGCCTATGTTACAAG 59.007 38.462 0.00 0.00 0.00 3.16
3865 6223 6.766467 GCCTTTACTATGCCTATGTTACAAGT 59.234 38.462 0.00 0.00 0.00 3.16
3866 6224 7.929785 GCCTTTACTATGCCTATGTTACAAGTA 59.070 37.037 0.00 0.00 0.00 2.24
3867 6225 9.998106 CCTTTACTATGCCTATGTTACAAGTAT 57.002 33.333 0.00 0.00 0.00 2.12
3872 6230 9.929180 ACTATGCCTATGTTACAAGTATACATG 57.071 33.333 5.50 6.07 34.55 3.21
3873 6231 9.929180 CTATGCCTATGTTACAAGTATACATGT 57.071 33.333 17.10 17.10 34.55 3.21
3875 6233 8.432110 TGCCTATGTTACAAGTATACATGTTG 57.568 34.615 18.02 9.92 34.55 3.33
3876 6234 8.044309 TGCCTATGTTACAAGTATACATGTTGT 58.956 33.333 18.02 14.73 38.04 3.32
3877 6235 8.889717 GCCTATGTTACAAGTATACATGTTGTT 58.110 33.333 18.02 5.33 35.95 2.83
3882 6240 9.723447 TGTTACAAGTATACATGTTGTTGTTTG 57.277 29.630 18.02 5.95 35.95 2.93
3883 6241 9.938670 GTTACAAGTATACATGTTGTTGTTTGA 57.061 29.630 18.02 0.00 35.95 2.69
3886 6244 9.862371 ACAAGTATACATGTTGTTGTTTGAAAA 57.138 25.926 2.30 0.00 30.07 2.29
3888 6246 9.862371 AAGTATACATGTTGTTGTTTGAAAACA 57.138 25.926 2.30 4.52 46.35 2.83
3906 6264 3.963383 ACAGAAAGTTTACCGCTGTTG 57.037 42.857 2.65 0.00 36.49 3.33
3907 6265 2.032924 ACAGAAAGTTTACCGCTGTTGC 59.967 45.455 2.65 0.00 36.49 4.17
3908 6266 2.032799 CAGAAAGTTTACCGCTGTTGCA 59.967 45.455 0.00 0.00 39.64 4.08
3909 6267 2.685897 AGAAAGTTTACCGCTGTTGCAA 59.314 40.909 0.00 0.00 39.64 4.08
3910 6268 3.317993 AGAAAGTTTACCGCTGTTGCAAT 59.682 39.130 0.59 0.00 39.64 3.56
3911 6269 4.517453 AGAAAGTTTACCGCTGTTGCAATA 59.483 37.500 0.59 0.00 39.64 1.90
3912 6270 4.839668 AAGTTTACCGCTGTTGCAATAA 57.160 36.364 0.59 0.00 39.64 1.40
3913 6271 5.385509 AAGTTTACCGCTGTTGCAATAAT 57.614 34.783 0.59 0.00 39.64 1.28
3914 6272 5.385509 AGTTTACCGCTGTTGCAATAATT 57.614 34.783 0.59 0.00 39.64 1.40
3915 6273 5.778862 AGTTTACCGCTGTTGCAATAATTT 58.221 33.333 0.59 0.00 39.64 1.82
3916 6274 5.861787 AGTTTACCGCTGTTGCAATAATTTC 59.138 36.000 0.59 0.00 39.64 2.17
3917 6275 3.230743 ACCGCTGTTGCAATAATTTCC 57.769 42.857 0.59 0.00 39.64 3.13
3918 6276 2.825532 ACCGCTGTTGCAATAATTTCCT 59.174 40.909 0.59 0.00 39.64 3.36
3919 6277 4.013728 ACCGCTGTTGCAATAATTTCCTA 58.986 39.130 0.59 0.00 39.64 2.94
3920 6278 4.096382 ACCGCTGTTGCAATAATTTCCTAG 59.904 41.667 0.59 0.00 39.64 3.02
3921 6279 4.335315 CCGCTGTTGCAATAATTTCCTAGA 59.665 41.667 0.59 0.00 39.64 2.43
3922 6280 5.163663 CCGCTGTTGCAATAATTTCCTAGAA 60.164 40.000 0.59 0.00 39.64 2.10
3923 6281 6.321717 CGCTGTTGCAATAATTTCCTAGAAA 58.678 36.000 0.59 0.00 39.64 2.52
3924 6282 6.806249 CGCTGTTGCAATAATTTCCTAGAAAA 59.194 34.615 0.59 0.00 39.64 2.29
3925 6283 7.008628 CGCTGTTGCAATAATTTCCTAGAAAAG 59.991 37.037 0.59 0.00 39.64 2.27
3926 6284 7.814587 GCTGTTGCAATAATTTCCTAGAAAAGT 59.185 33.333 0.59 0.00 39.41 2.66
3927 6285 9.346725 CTGTTGCAATAATTTCCTAGAAAAGTC 57.653 33.333 0.59 0.00 0.00 3.01
3928 6286 8.855110 TGTTGCAATAATTTCCTAGAAAAGTCA 58.145 29.630 0.59 0.00 0.00 3.41
3929 6287 9.346725 GTTGCAATAATTTCCTAGAAAAGTCAG 57.653 33.333 0.59 0.00 0.00 3.51
3930 6288 8.862325 TGCAATAATTTCCTAGAAAAGTCAGA 57.138 30.769 0.00 0.00 0.00 3.27
3931 6289 9.295825 TGCAATAATTTCCTAGAAAAGTCAGAA 57.704 29.630 0.00 0.00 0.00 3.02
3936 6294 7.693969 ATTTCCTAGAAAAGTCAGAATGTGG 57.306 36.000 0.00 0.00 37.40 4.17
3937 6295 4.579869 TCCTAGAAAAGTCAGAATGTGGC 58.420 43.478 0.00 0.00 37.40 5.01
3938 6296 4.287067 TCCTAGAAAAGTCAGAATGTGGCT 59.713 41.667 0.00 0.00 45.84 4.75
3939 6297 4.633565 CCTAGAAAAGTCAGAATGTGGCTC 59.366 45.833 0.00 0.00 41.69 4.70
3940 6298 4.090761 AGAAAAGTCAGAATGTGGCTCA 57.909 40.909 0.00 0.00 41.69 4.26
3941 6299 3.817647 AGAAAAGTCAGAATGTGGCTCAC 59.182 43.478 0.00 0.00 41.69 3.51
3942 6300 2.936919 AAGTCAGAATGTGGCTCACA 57.063 45.000 9.93 9.93 41.69 3.58
3957 6315 4.760047 ACATCAGTGACCGCCGCC 62.760 66.667 0.00 0.00 0.00 6.13
3975 6333 4.264638 GTGTTTGTGCCCGCGCTT 62.265 61.111 5.56 0.00 35.36 4.68
3976 6334 4.263209 TGTTTGTGCCCGCGCTTG 62.263 61.111 5.56 0.00 35.36 4.01
3977 6335 4.264638 GTTTGTGCCCGCGCTTGT 62.265 61.111 5.56 0.00 35.36 3.16
3978 6336 4.263209 TTTGTGCCCGCGCTTGTG 62.263 61.111 5.56 0.00 35.36 3.33
3990 6348 2.743928 CTTGTGGAGGCGGTGCTC 60.744 66.667 0.00 0.00 0.00 4.26
3991 6349 4.329545 TTGTGGAGGCGGTGCTCC 62.330 66.667 0.00 0.00 40.05 4.70
3994 6352 4.100084 TGGAGGCGGTGCTCCATG 62.100 66.667 5.42 0.00 44.02 3.66
3995 6353 4.864334 GGAGGCGGTGCTCCATGG 62.864 72.222 4.97 4.97 39.45 3.66
4000 6358 4.864334 CGGTGCTCCATGGCCTCC 62.864 72.222 6.96 9.78 0.00 4.30
4001 6359 3.415087 GGTGCTCCATGGCCTCCT 61.415 66.667 6.96 0.00 0.00 3.69
4002 6360 2.191641 GTGCTCCATGGCCTCCTC 59.808 66.667 6.96 0.00 0.00 3.71
4003 6361 3.473647 TGCTCCATGGCCTCCTCG 61.474 66.667 6.96 0.00 0.00 4.63
4004 6362 4.925861 GCTCCATGGCCTCCTCGC 62.926 72.222 6.96 0.00 0.00 5.03
4005 6363 4.598894 CTCCATGGCCTCCTCGCG 62.599 72.222 6.96 0.00 0.00 5.87
4014 6372 4.436998 CTCCTCGCGGTGGGTCAC 62.437 72.222 6.13 0.00 0.00 3.67
4023 6381 2.282462 GTGGGTCACCTTGGCCTG 60.282 66.667 3.32 0.00 43.05 4.85
4024 6382 3.579302 TGGGTCACCTTGGCCTGG 61.579 66.667 3.32 9.23 43.05 4.45
4025 6383 3.580319 GGGTCACCTTGGCCTGGT 61.580 66.667 14.02 14.02 43.05 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 2.594131 GGTAGAAACTTTGGGGCACTT 58.406 47.619 0.00 0.00 0.00 3.16
96 98 5.843534 CCTATGCATAGGGGTTGGCACAA 62.844 52.174 36.06 0.44 44.74 3.33
148 154 9.425893 CACGTGATTCACTTGATGTATATTTTC 57.574 33.333 16.07 0.00 36.00 2.29
248 256 8.390921 AGTTTCCCCTTTGAAGTTATCTTATCA 58.609 33.333 0.00 0.00 33.64 2.15
384 408 5.647658 TGTGTTTGATCTCTCTCTCTCTCTC 59.352 44.000 0.00 0.00 0.00 3.20
385 409 5.569355 TGTGTTTGATCTCTCTCTCTCTCT 58.431 41.667 0.00 0.00 0.00 3.10
389 413 5.893255 AGCTATGTGTTTGATCTCTCTCTCT 59.107 40.000 0.00 0.00 0.00 3.10
390 414 6.147864 AGCTATGTGTTTGATCTCTCTCTC 57.852 41.667 0.00 0.00 0.00 3.20
391 415 7.838079 ATAGCTATGTGTTTGATCTCTCTCT 57.162 36.000 5.15 0.00 0.00 3.10
861 939 1.668826 ATTAACCCAGAGCCCAGTGA 58.331 50.000 0.00 0.00 0.00 3.41
1083 1187 5.760253 GCATATGCCACTTATAGTTGTCAGT 59.240 40.000 17.26 0.00 34.31 3.41
1109 1213 9.840427 GCTTATATGTTCGGTAAAATATGCATT 57.160 29.630 3.54 0.00 0.00 3.56
1126 1230 9.056005 ACGTGTCAATGAAATATGCTTATATGT 57.944 29.630 0.00 0.00 0.00 2.29
1169 1273 7.443879 TCAGCTATCAAGATTTGTTTGTGTGTA 59.556 33.333 0.00 0.00 0.00 2.90
1197 1301 9.255304 CTAGGACTTAAAAGACATCTAATCTGC 57.745 37.037 0.00 0.00 0.00 4.26
1251 1355 9.601810 AAAAATGAAACTAGAAAGGGAATAGGT 57.398 29.630 0.00 0.00 0.00 3.08
1255 1359 8.807118 GGAGAAAAATGAAACTAGAAAGGGAAT 58.193 33.333 0.00 0.00 0.00 3.01
1256 1360 7.232737 GGGAGAAAAATGAAACTAGAAAGGGAA 59.767 37.037 0.00 0.00 0.00 3.97
1257 1361 6.719829 GGGAGAAAAATGAAACTAGAAAGGGA 59.280 38.462 0.00 0.00 0.00 4.20
1258 1362 6.721668 AGGGAGAAAAATGAAACTAGAAAGGG 59.278 38.462 0.00 0.00 0.00 3.95
1259 1363 7.767250 AGGGAGAAAAATGAAACTAGAAAGG 57.233 36.000 0.00 0.00 0.00 3.11
1265 1369 9.753674 ACATGATAAGGGAGAAAAATGAAACTA 57.246 29.630 0.00 0.00 0.00 2.24
1266 1370 8.655935 ACATGATAAGGGAGAAAAATGAAACT 57.344 30.769 0.00 0.00 0.00 2.66
1267 1371 8.743714 AGACATGATAAGGGAGAAAAATGAAAC 58.256 33.333 0.00 0.00 0.00 2.78
1268 1372 8.884124 AGACATGATAAGGGAGAAAAATGAAA 57.116 30.769 0.00 0.00 0.00 2.69
1269 1373 8.742777 CAAGACATGATAAGGGAGAAAAATGAA 58.257 33.333 0.00 0.00 0.00 2.57
1270 1374 7.890127 ACAAGACATGATAAGGGAGAAAAATGA 59.110 33.333 0.00 0.00 0.00 2.57
1271 1375 8.059798 ACAAGACATGATAAGGGAGAAAAATG 57.940 34.615 0.00 0.00 0.00 2.32
1272 1376 8.655935 AACAAGACATGATAAGGGAGAAAAAT 57.344 30.769 0.00 0.00 0.00 1.82
1273 1377 8.359642 CAAACAAGACATGATAAGGGAGAAAAA 58.640 33.333 0.00 0.00 0.00 1.94
1274 1378 7.723616 TCAAACAAGACATGATAAGGGAGAAAA 59.276 33.333 0.00 0.00 0.00 2.29
1275 1379 7.230747 TCAAACAAGACATGATAAGGGAGAAA 58.769 34.615 0.00 0.00 0.00 2.52
1276 1380 6.778821 TCAAACAAGACATGATAAGGGAGAA 58.221 36.000 0.00 0.00 0.00 2.87
1277 1381 6.373005 TCAAACAAGACATGATAAGGGAGA 57.627 37.500 0.00 0.00 0.00 3.71
1278 1382 7.636150 AATCAAACAAGACATGATAAGGGAG 57.364 36.000 0.00 0.00 33.60 4.30
1279 1383 9.177608 CTTAATCAAACAAGACATGATAAGGGA 57.822 33.333 0.00 0.00 33.60 4.20
1280 1384 8.960591 ACTTAATCAAACAAGACATGATAAGGG 58.039 33.333 0.00 0.00 33.60 3.95
1281 1385 9.994432 GACTTAATCAAACAAGACATGATAAGG 57.006 33.333 0.00 0.00 33.60 2.69
1307 1411 4.634004 TGAGCAATCCAAAAGTACCGTATG 59.366 41.667 0.00 0.00 0.00 2.39
1336 3646 5.819991 GGGATTTCTAATGATAGCCCATCA 58.180 41.667 5.23 1.38 45.30 3.07
1404 3714 6.697455 GTCGTATCAGATTGTGAAGATAGCAA 59.303 38.462 0.00 0.00 39.19 3.91
1537 3847 5.598830 ACTTGTCTCTTTTCTCAGTCCACTA 59.401 40.000 0.00 0.00 0.00 2.74
1910 4225 0.395862 TCTCCTCCTCCGATGTCCAC 60.396 60.000 0.00 0.00 0.00 4.02
1917 4232 1.296984 AGTAACCTCTCCTCCTCCGA 58.703 55.000 0.00 0.00 0.00 4.55
2159 4474 6.100424 CCCTATCTCCAGTTACCATCTTCTTT 59.900 42.308 0.00 0.00 0.00 2.52
2450 4784 2.373836 TCCTTGGCTGGTTTGCTAGTAA 59.626 45.455 0.00 0.00 0.00 2.24
2491 4825 0.035458 CCGGATGGGCTTGTATCCTC 59.965 60.000 0.00 0.00 40.55 3.71
2492 4826 0.694444 ACCGGATGGGCTTGTATCCT 60.694 55.000 9.46 0.00 40.55 3.24
2493 4827 0.535102 CACCGGATGGGCTTGTATCC 60.535 60.000 9.46 0.00 40.62 2.59
2649 4986 8.373170 TGAATTTGCGATTCATGCATAAATGCT 61.373 33.333 15.47 0.00 42.03 3.79
2671 5008 1.406539 GGCCGATGTTTGCTCATGAAT 59.593 47.619 0.00 0.00 0.00 2.57
2944 5288 3.951037 AGCACCAAATGTTGTTACTGACA 59.049 39.130 0.00 0.00 36.19 3.58
2983 5327 3.139077 GCACTGTATAGGGTATGGCAAC 58.861 50.000 0.00 0.00 0.00 4.17
2991 5335 5.126699 ACTACTAGTGCACTGTATAGGGT 57.873 43.478 29.57 16.87 0.00 4.34
2992 5336 6.060136 TGTACTACTAGTGCACTGTATAGGG 58.940 44.000 29.57 16.30 35.91 3.53
3042 5386 9.578576 TCCTTTTCTTATAGCATTAGCATGAAT 57.421 29.630 0.00 0.00 45.49 2.57
3093 5437 3.568007 ACATGACACAACAATACCCACAC 59.432 43.478 0.00 0.00 0.00 3.82
3133 5477 6.153170 TGTCATAAGATCACCGTTGTAGGTAA 59.847 38.462 0.00 0.00 43.89 2.85
3285 5643 3.457380 ACATGCTGAGATTATCCAGGTGT 59.543 43.478 10.92 0.00 0.00 4.16
3299 5657 2.498885 ACACTATCTCTGCACATGCTGA 59.501 45.455 12.21 12.21 44.81 4.26
3338 5696 6.478512 TTCAATCTAAAAACTGGGCAAACT 57.521 33.333 0.00 0.00 0.00 2.66
3340 5698 7.989741 TGAAATTCAATCTAAAAACTGGGCAAA 59.010 29.630 0.00 0.00 0.00 3.68
3341 5699 7.504403 TGAAATTCAATCTAAAAACTGGGCAA 58.496 30.769 0.00 0.00 0.00 4.52
3342 5700 7.060383 TGAAATTCAATCTAAAAACTGGGCA 57.940 32.000 0.00 0.00 0.00 5.36
3343 5701 7.154656 ACTGAAATTCAATCTAAAAACTGGGC 58.845 34.615 0.00 0.00 0.00 5.36
3344 5702 9.546428 AAACTGAAATTCAATCTAAAAACTGGG 57.454 29.630 0.00 0.00 0.00 4.45
3380 5738 6.476378 AGATACAAACACCATTTCAGTAGCT 58.524 36.000 0.00 0.00 0.00 3.32
3441 5799 1.145738 ACTGAACTGACCAAGGCCAAT 59.854 47.619 5.01 0.00 0.00 3.16
3454 5812 8.368668 ACATTTAGTAGCTACAGAAACTGAACT 58.631 33.333 25.28 4.67 35.18 3.01
3478 5836 9.573166 CTTGGAATGGGAGTTATTAATGATACA 57.427 33.333 0.00 0.00 0.00 2.29
3479 5837 9.793259 TCTTGGAATGGGAGTTATTAATGATAC 57.207 33.333 0.00 0.00 0.00 2.24
3489 5847 2.929301 AGGGTCTTGGAATGGGAGTTA 58.071 47.619 0.00 0.00 0.00 2.24
3509 5867 7.654022 AATTAACTTCCTCTGTTTGGTTCAA 57.346 32.000 0.00 0.00 0.00 2.69
3544 5902 3.135895 AGGGTGGAAATTATACGTGGGAG 59.864 47.826 0.00 0.00 0.00 4.30
3552 5910 5.881443 CGTTTGGTGTAGGGTGGAAATTATA 59.119 40.000 0.00 0.00 0.00 0.98
3559 5917 0.107081 CACGTTTGGTGTAGGGTGGA 59.893 55.000 0.00 0.00 41.89 4.02
3603 5961 2.195727 TGGCTGTGGGATTAGACATGA 58.804 47.619 0.00 0.00 0.00 3.07
3620 5978 5.510690 CGGGAATTATTAAAGGGGAATTGGC 60.511 44.000 0.00 0.00 0.00 4.52
3631 5989 5.202765 GGAAAGGGACCGGGAATTATTAAA 58.797 41.667 6.32 0.00 0.00 1.52
3644 6002 2.290768 GGTAGTTTGAGGGAAAGGGACC 60.291 54.545 0.00 0.00 0.00 4.46
3670 6028 6.691388 CCAATCTATTTAAAACCTTACAGCGC 59.309 38.462 0.00 0.00 0.00 5.92
3684 6042 8.757877 CCAAACTTTCCAATCCCAATCTATTTA 58.242 33.333 0.00 0.00 0.00 1.40
3685 6043 7.237471 ACCAAACTTTCCAATCCCAATCTATTT 59.763 33.333 0.00 0.00 0.00 1.40
3686 6044 6.730507 ACCAAACTTTCCAATCCCAATCTATT 59.269 34.615 0.00 0.00 0.00 1.73
3687 6045 6.155049 CACCAAACTTTCCAATCCCAATCTAT 59.845 38.462 0.00 0.00 0.00 1.98
3688 6046 5.480073 CACCAAACTTTCCAATCCCAATCTA 59.520 40.000 0.00 0.00 0.00 1.98
3689 6047 4.284234 CACCAAACTTTCCAATCCCAATCT 59.716 41.667 0.00 0.00 0.00 2.40
3690 6048 4.040339 ACACCAAACTTTCCAATCCCAATC 59.960 41.667 0.00 0.00 0.00 2.67
3691 6049 3.973305 ACACCAAACTTTCCAATCCCAAT 59.027 39.130 0.00 0.00 0.00 3.16
3692 6050 3.133721 CACACCAAACTTTCCAATCCCAA 59.866 43.478 0.00 0.00 0.00 4.12
3693 6051 2.697751 CACACCAAACTTTCCAATCCCA 59.302 45.455 0.00 0.00 0.00 4.37
3694 6052 2.547855 GCACACCAAACTTTCCAATCCC 60.548 50.000 0.00 0.00 0.00 3.85
3695 6053 2.365293 AGCACACCAAACTTTCCAATCC 59.635 45.455 0.00 0.00 0.00 3.01
3696 6054 3.068024 TCAGCACACCAAACTTTCCAATC 59.932 43.478 0.00 0.00 0.00 2.67
3697 6055 3.030291 TCAGCACACCAAACTTTCCAAT 58.970 40.909 0.00 0.00 0.00 3.16
3698 6056 2.451490 TCAGCACACCAAACTTTCCAA 58.549 42.857 0.00 0.00 0.00 3.53
3699 6057 2.136298 TCAGCACACCAAACTTTCCA 57.864 45.000 0.00 0.00 0.00 3.53
3700 6058 3.733443 AATCAGCACACCAAACTTTCC 57.267 42.857 0.00 0.00 0.00 3.13
3701 6059 4.681744 TGAAATCAGCACACCAAACTTTC 58.318 39.130 0.00 0.00 0.00 2.62
3702 6060 4.402155 TCTGAAATCAGCACACCAAACTTT 59.598 37.500 5.53 0.00 43.46 2.66
3703 6061 3.953612 TCTGAAATCAGCACACCAAACTT 59.046 39.130 5.53 0.00 43.46 2.66
3704 6062 3.554934 TCTGAAATCAGCACACCAAACT 58.445 40.909 5.53 0.00 43.46 2.66
3705 6063 3.565482 TCTCTGAAATCAGCACACCAAAC 59.435 43.478 5.53 0.00 43.46 2.93
3706 6064 3.819368 TCTCTGAAATCAGCACACCAAA 58.181 40.909 5.53 0.00 43.46 3.28
3707 6065 3.490439 TCTCTGAAATCAGCACACCAA 57.510 42.857 5.53 0.00 43.46 3.67
3708 6066 3.708403 ATCTCTGAAATCAGCACACCA 57.292 42.857 5.53 0.00 43.46 4.17
3709 6067 5.423015 TCTAATCTCTGAAATCAGCACACC 58.577 41.667 5.53 0.00 43.46 4.16
3710 6068 6.593382 ACTTCTAATCTCTGAAATCAGCACAC 59.407 38.462 5.53 0.00 43.46 3.82
3711 6069 6.705302 ACTTCTAATCTCTGAAATCAGCACA 58.295 36.000 5.53 0.00 43.46 4.57
3712 6070 7.608308 AACTTCTAATCTCTGAAATCAGCAC 57.392 36.000 5.53 0.00 43.46 4.40
3713 6071 9.376075 CTAAACTTCTAATCTCTGAAATCAGCA 57.624 33.333 5.53 0.00 43.46 4.41
3714 6072 8.825745 CCTAAACTTCTAATCTCTGAAATCAGC 58.174 37.037 5.53 0.00 43.46 4.26
3715 6073 8.825745 GCCTAAACTTCTAATCTCTGAAATCAG 58.174 37.037 3.99 3.99 45.08 2.90
3716 6074 8.543774 AGCCTAAACTTCTAATCTCTGAAATCA 58.456 33.333 0.00 0.00 0.00 2.57
3717 6075 8.956533 AGCCTAAACTTCTAATCTCTGAAATC 57.043 34.615 0.00 0.00 0.00 2.17
3718 6076 9.746457 AAAGCCTAAACTTCTAATCTCTGAAAT 57.254 29.630 0.00 0.00 0.00 2.17
3720 6078 9.877178 CTAAAGCCTAAACTTCTAATCTCTGAA 57.123 33.333 0.00 0.00 0.00 3.02
3721 6079 9.036980 ACTAAAGCCTAAACTTCTAATCTCTGA 57.963 33.333 0.00 0.00 0.00 3.27
3722 6080 9.660180 AACTAAAGCCTAAACTTCTAATCTCTG 57.340 33.333 0.00 0.00 0.00 3.35
3731 6089 9.378597 CGAAAACTAAACTAAAGCCTAAACTTC 57.621 33.333 0.00 0.00 0.00 3.01
3732 6090 8.896744 ACGAAAACTAAACTAAAGCCTAAACTT 58.103 29.630 0.00 0.00 0.00 2.66
3733 6091 8.442632 ACGAAAACTAAACTAAAGCCTAAACT 57.557 30.769 0.00 0.00 0.00 2.66
3734 6092 8.554528 AGACGAAAACTAAACTAAAGCCTAAAC 58.445 33.333 0.00 0.00 0.00 2.01
3735 6093 8.667076 AGACGAAAACTAAACTAAAGCCTAAA 57.333 30.769 0.00 0.00 0.00 1.85
3736 6094 9.762933 TTAGACGAAAACTAAACTAAAGCCTAA 57.237 29.630 0.00 0.00 0.00 2.69
3737 6095 9.933723 ATTAGACGAAAACTAAACTAAAGCCTA 57.066 29.630 0.00 0.00 34.28 3.93
3738 6096 8.843885 ATTAGACGAAAACTAAACTAAAGCCT 57.156 30.769 0.00 0.00 34.28 4.58
3750 6108 9.768662 TCCTAACAAAACTATTAGACGAAAACT 57.231 29.630 0.00 0.00 31.20 2.66
3755 6113 8.662141 GCAAATCCTAACAAAACTATTAGACGA 58.338 33.333 0.00 0.00 31.20 4.20
3756 6114 8.665685 AGCAAATCCTAACAAAACTATTAGACG 58.334 33.333 0.00 0.00 31.20 4.18
3759 6117 9.076596 GCAAGCAAATCCTAACAAAACTATTAG 57.923 33.333 0.00 0.00 0.00 1.73
3760 6118 8.802267 AGCAAGCAAATCCTAACAAAACTATTA 58.198 29.630 0.00 0.00 0.00 0.98
3761 6119 7.599998 CAGCAAGCAAATCCTAACAAAACTATT 59.400 33.333 0.00 0.00 0.00 1.73
3762 6120 7.092716 CAGCAAGCAAATCCTAACAAAACTAT 58.907 34.615 0.00 0.00 0.00 2.12
3763 6121 6.040391 ACAGCAAGCAAATCCTAACAAAACTA 59.960 34.615 0.00 0.00 0.00 2.24
3764 6122 5.163416 ACAGCAAGCAAATCCTAACAAAACT 60.163 36.000 0.00 0.00 0.00 2.66
3765 6123 5.049828 ACAGCAAGCAAATCCTAACAAAAC 58.950 37.500 0.00 0.00 0.00 2.43
3766 6124 5.275067 ACAGCAAGCAAATCCTAACAAAA 57.725 34.783 0.00 0.00 0.00 2.44
3767 6125 4.935352 ACAGCAAGCAAATCCTAACAAA 57.065 36.364 0.00 0.00 0.00 2.83
3768 6126 4.935352 AACAGCAAGCAAATCCTAACAA 57.065 36.364 0.00 0.00 0.00 2.83
3769 6127 6.588719 AATAACAGCAAGCAAATCCTAACA 57.411 33.333 0.00 0.00 0.00 2.41
3770 6128 8.458843 TCTAAATAACAGCAAGCAAATCCTAAC 58.541 33.333 0.00 0.00 0.00 2.34
3771 6129 8.574251 TCTAAATAACAGCAAGCAAATCCTAA 57.426 30.769 0.00 0.00 0.00 2.69
3772 6130 8.458843 GTTCTAAATAACAGCAAGCAAATCCTA 58.541 33.333 0.00 0.00 0.00 2.94
3773 6131 7.039784 TGTTCTAAATAACAGCAAGCAAATCCT 60.040 33.333 0.00 0.00 34.50 3.24
3774 6132 7.090173 TGTTCTAAATAACAGCAAGCAAATCC 58.910 34.615 0.00 0.00 34.50 3.01
3775 6133 8.519492 TTGTTCTAAATAACAGCAAGCAAATC 57.481 30.769 0.00 0.00 40.29 2.17
3776 6134 8.928733 CATTGTTCTAAATAACAGCAAGCAAAT 58.071 29.630 0.00 0.00 40.29 2.32
3777 6135 7.925483 ACATTGTTCTAAATAACAGCAAGCAAA 59.075 29.630 0.00 0.00 40.29 3.68
3778 6136 7.432869 ACATTGTTCTAAATAACAGCAAGCAA 58.567 30.769 0.00 0.00 40.29 3.91
3779 6137 6.980593 ACATTGTTCTAAATAACAGCAAGCA 58.019 32.000 0.00 0.00 40.29 3.91
3780 6138 7.873739 AACATTGTTCTAAATAACAGCAAGC 57.126 32.000 0.00 0.00 40.29 4.01
3782 6140 8.547069 GCAAAACATTGTTCTAAATAACAGCAA 58.453 29.630 1.83 0.00 40.29 3.91
3783 6141 7.708322 TGCAAAACATTGTTCTAAATAACAGCA 59.292 29.630 1.83 0.00 40.29 4.41
3784 6142 8.071122 TGCAAAACATTGTTCTAAATAACAGC 57.929 30.769 1.83 0.00 40.29 4.40
3815 6173 9.748708 GCTATCAATGCCACTTTTATTGAAATA 57.251 29.630 0.00 0.00 42.20 1.40
3816 6174 8.652810 GCTATCAATGCCACTTTTATTGAAAT 57.347 30.769 0.00 0.00 42.20 2.17
3830 6188 8.068943 ATAGGCATAGTAAAGGCTATCAATGCC 61.069 40.741 22.91 22.91 46.74 4.40
3831 6189 5.006386 AGGCATAGTAAAGGCTATCAATGC 58.994 41.667 11.21 11.21 39.04 3.56
3832 6190 7.826252 ACATAGGCATAGTAAAGGCTATCAATG 59.174 37.037 15.04 11.18 46.74 2.82
3833 6191 7.922382 ACATAGGCATAGTAAAGGCTATCAAT 58.078 34.615 15.04 5.82 46.74 2.57
3834 6192 7.316393 ACATAGGCATAGTAAAGGCTATCAA 57.684 36.000 15.04 0.00 46.74 2.57
3835 6193 6.935240 ACATAGGCATAGTAAAGGCTATCA 57.065 37.500 15.04 0.00 46.74 2.15
3836 6194 8.311836 TGTAACATAGGCATAGTAAAGGCTATC 58.688 37.037 15.04 8.16 46.74 2.08
3838 6196 7.606135 TGTAACATAGGCATAGTAAAGGCTA 57.394 36.000 10.38 10.38 45.29 3.93
3839 6197 6.494666 TGTAACATAGGCATAGTAAAGGCT 57.505 37.500 7.14 7.14 43.59 4.58
3840 6198 6.766467 ACTTGTAACATAGGCATAGTAAAGGC 59.234 38.462 0.00 0.00 0.00 4.35
3841 6199 9.998106 ATACTTGTAACATAGGCATAGTAAAGG 57.002 33.333 0.00 0.00 0.00 3.11
3846 6204 9.929180 CATGTATACTTGTAACATAGGCATAGT 57.071 33.333 9.96 0.00 32.70 2.12
3847 6205 9.929180 ACATGTATACTTGTAACATAGGCATAG 57.071 33.333 19.72 0.00 32.70 2.23
3849 6207 9.056005 CAACATGTATACTTGTAACATAGGCAT 57.944 33.333 20.98 3.07 34.38 4.40
3850 6208 8.044309 ACAACATGTATACTTGTAACATAGGCA 58.956 33.333 20.98 0.00 34.38 4.75
3851 6209 8.433421 ACAACATGTATACTTGTAACATAGGC 57.567 34.615 20.98 0.00 34.38 3.93
3856 6214 9.723447 CAAACAACAACATGTATACTTGTAACA 57.277 29.630 20.98 0.00 34.38 2.41
3857 6215 9.938670 TCAAACAACAACATGTATACTTGTAAC 57.061 29.630 20.98 0.00 34.38 2.50
3860 6218 9.862371 TTTTCAAACAACAACATGTATACTTGT 57.138 25.926 16.47 16.47 36.02 3.16
3862 6220 9.862371 TGTTTTCAAACAACAACATGTATACTT 57.138 25.926 0.00 0.00 45.17 2.24
3877 6235 5.573669 GCGGTAAACTTTCTGTTTTCAAACA 59.426 36.000 5.05 5.05 45.69 2.83
3878 6236 5.803461 AGCGGTAAACTTTCTGTTTTCAAAC 59.197 36.000 0.00 0.00 45.69 2.93
3879 6237 5.802956 CAGCGGTAAACTTTCTGTTTTCAAA 59.197 36.000 0.00 0.00 45.69 2.69
3880 6238 5.106078 ACAGCGGTAAACTTTCTGTTTTCAA 60.106 36.000 0.00 0.00 45.69 2.69
3881 6239 4.396790 ACAGCGGTAAACTTTCTGTTTTCA 59.603 37.500 0.00 0.00 45.69 2.69
3882 6240 4.916870 ACAGCGGTAAACTTTCTGTTTTC 58.083 39.130 0.00 0.00 45.69 2.29
3883 6241 4.976224 ACAGCGGTAAACTTTCTGTTTT 57.024 36.364 0.00 0.00 45.69 2.43
3885 6243 3.488553 GCAACAGCGGTAAACTTTCTGTT 60.489 43.478 0.00 0.00 45.53 3.16
3886 6244 2.032924 GCAACAGCGGTAAACTTTCTGT 59.967 45.455 0.00 0.00 39.42 3.41
3887 6245 2.032799 TGCAACAGCGGTAAACTTTCTG 59.967 45.455 0.00 0.00 0.00 3.02
3888 6246 2.294074 TGCAACAGCGGTAAACTTTCT 58.706 42.857 0.00 0.00 0.00 2.52
3889 6247 2.766970 TGCAACAGCGGTAAACTTTC 57.233 45.000 0.00 0.00 0.00 2.62
3890 6248 3.726291 ATTGCAACAGCGGTAAACTTT 57.274 38.095 0.00 0.00 0.00 2.66
3891 6249 4.839668 TTATTGCAACAGCGGTAAACTT 57.160 36.364 0.00 0.00 0.00 2.66
3892 6250 5.385509 AATTATTGCAACAGCGGTAAACT 57.614 34.783 0.00 0.00 0.00 2.66
3893 6251 5.061684 GGAAATTATTGCAACAGCGGTAAAC 59.938 40.000 0.00 0.00 0.00 2.01
3894 6252 5.047660 AGGAAATTATTGCAACAGCGGTAAA 60.048 36.000 0.00 0.00 0.00 2.01
3895 6253 4.461081 AGGAAATTATTGCAACAGCGGTAA 59.539 37.500 0.00 0.00 0.00 2.85
3896 6254 4.013728 AGGAAATTATTGCAACAGCGGTA 58.986 39.130 0.00 0.00 0.00 4.02
3897 6255 2.825532 AGGAAATTATTGCAACAGCGGT 59.174 40.909 0.00 0.00 0.00 5.68
3898 6256 3.508744 AGGAAATTATTGCAACAGCGG 57.491 42.857 0.00 0.00 0.00 5.52
3899 6257 5.484173 TCTAGGAAATTATTGCAACAGCG 57.516 39.130 0.00 0.00 0.00 5.18
3900 6258 7.814587 ACTTTTCTAGGAAATTATTGCAACAGC 59.185 33.333 0.00 0.00 0.00 4.40
3901 6259 9.346725 GACTTTTCTAGGAAATTATTGCAACAG 57.653 33.333 0.00 0.00 0.00 3.16
3902 6260 8.855110 TGACTTTTCTAGGAAATTATTGCAACA 58.145 29.630 0.00 0.00 0.00 3.33
3903 6261 9.346725 CTGACTTTTCTAGGAAATTATTGCAAC 57.653 33.333 0.00 0.00 0.00 4.17
3904 6262 9.295825 TCTGACTTTTCTAGGAAATTATTGCAA 57.704 29.630 0.00 0.00 0.00 4.08
3905 6263 8.862325 TCTGACTTTTCTAGGAAATTATTGCA 57.138 30.769 0.00 0.00 0.00 4.08
3910 6268 9.231297 CCACATTCTGACTTTTCTAGGAAATTA 57.769 33.333 0.00 0.00 0.00 1.40
3911 6269 7.309438 GCCACATTCTGACTTTTCTAGGAAATT 60.309 37.037 0.00 0.00 0.00 1.82
3912 6270 6.151817 GCCACATTCTGACTTTTCTAGGAAAT 59.848 38.462 0.00 0.00 0.00 2.17
3913 6271 5.473504 GCCACATTCTGACTTTTCTAGGAAA 59.526 40.000 0.00 0.00 0.00 3.13
3914 6272 5.003804 GCCACATTCTGACTTTTCTAGGAA 58.996 41.667 0.00 0.00 0.00 3.36
3915 6273 4.287067 AGCCACATTCTGACTTTTCTAGGA 59.713 41.667 0.00 0.00 0.00 2.94
3916 6274 4.583871 AGCCACATTCTGACTTTTCTAGG 58.416 43.478 0.00 0.00 0.00 3.02
3917 6275 5.121454 GTGAGCCACATTCTGACTTTTCTAG 59.879 44.000 1.01 0.00 34.08 2.43
3918 6276 4.997395 GTGAGCCACATTCTGACTTTTCTA 59.003 41.667 1.01 0.00 34.08 2.10
3919 6277 3.817647 GTGAGCCACATTCTGACTTTTCT 59.182 43.478 1.01 0.00 34.08 2.52
3920 6278 3.565482 TGTGAGCCACATTCTGACTTTTC 59.435 43.478 4.16 0.00 39.62 2.29
3921 6279 3.554934 TGTGAGCCACATTCTGACTTTT 58.445 40.909 4.16 0.00 39.62 2.27
3922 6280 3.213206 TGTGAGCCACATTCTGACTTT 57.787 42.857 4.16 0.00 39.62 2.66
3923 6281 2.936919 TGTGAGCCACATTCTGACTT 57.063 45.000 4.16 0.00 39.62 3.01
3939 6297 3.490759 GCGGCGGTCACTGATGTG 61.491 66.667 9.78 0.00 45.07 3.21
3940 6298 4.760047 GGCGGCGGTCACTGATGT 62.760 66.667 9.78 0.00 0.00 3.06
3958 6316 4.264638 AAGCGCGGGCACAAACAC 62.265 61.111 27.20 0.00 43.41 3.32
3959 6317 4.263209 CAAGCGCGGGCACAAACA 62.263 61.111 27.20 0.00 43.41 2.83
3960 6318 4.264638 ACAAGCGCGGGCACAAAC 62.265 61.111 27.20 0.00 43.41 2.93
3961 6319 4.263209 CACAAGCGCGGGCACAAA 62.263 61.111 27.20 0.00 43.41 2.83
3973 6331 2.743928 GAGCACCGCCTCCACAAG 60.744 66.667 0.00 0.00 0.00 3.16
3983 6341 4.864334 GGAGGCCATGGAGCACCG 62.864 72.222 18.40 0.00 39.42 4.94
3984 6342 3.412624 GAGGAGGCCATGGAGCACC 62.413 68.421 18.40 12.43 0.00 5.01
3985 6343 2.191641 GAGGAGGCCATGGAGCAC 59.808 66.667 18.40 2.01 0.00 4.40
3986 6344 3.473647 CGAGGAGGCCATGGAGCA 61.474 66.667 18.40 0.00 0.00 4.26
3987 6345 4.925861 GCGAGGAGGCCATGGAGC 62.926 72.222 18.40 0.00 0.00 4.70
3988 6346 4.598894 CGCGAGGAGGCCATGGAG 62.599 72.222 18.40 0.00 0.00 3.86
4006 6364 2.282462 CAGGCCAAGGTGACCCAC 60.282 66.667 5.01 0.00 0.00 4.61
4007 6365 3.579302 CCAGGCCAAGGTGACCCA 61.579 66.667 5.01 0.00 0.00 4.51
4008 6366 3.580319 ACCAGGCCAAGGTGACCC 61.580 66.667 18.15 0.00 38.13 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.