Multiple sequence alignment - TraesCS7A01G064300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G064300 chr7A 100.000 3707 0 0 1 3707 32034647 32030941 0.000000e+00 6846
1 TraesCS7A01G064300 chr7A 92.696 1109 69 7 598 1703 32291846 32290747 0.000000e+00 1589
2 TraesCS7A01G064300 chr7A 86.785 507 46 5 2 507 32196331 32195845 2.520000e-151 545
3 TraesCS7A01G064300 chr7A 82.537 607 60 18 2 602 32292840 32292274 3.330000e-135 492
4 TraesCS7A01G064300 chr7A 89.320 103 8 2 177 276 32291793 32291691 3.890000e-25 126
5 TraesCS7A01G064300 chr7D 89.409 2030 141 26 2 2009 31958223 31956246 0.000000e+00 2490
6 TraesCS7A01G064300 chr7D 92.505 934 54 8 2009 2940 31956214 31955295 0.000000e+00 1323
7 TraesCS7A01G064300 chr7D 82.262 451 52 16 3021 3455 31955092 31954654 7.570000e-97 364
8 TraesCS7A01G064300 chr7D 88.350 103 9 2 177 276 31957608 31957506 1.810000e-23 121
9 TraesCS7A01G064300 chr4A 87.587 1442 102 34 2006 3428 695998265 695999648 0.000000e+00 1600
10 TraesCS7A01G064300 chr4A 95.558 878 31 6 2 874 695993878 695994752 0.000000e+00 1399
11 TraesCS7A01G064300 chr4A 94.306 562 15 8 1465 2009 695997675 695998236 0.000000e+00 845
12 TraesCS7A01G064300 chrUn 93.443 305 20 0 2 306 298009311 298009007 1.570000e-123 453
13 TraesCS7A01G064300 chr3D 78.674 347 56 15 1251 1585 432028148 432027808 8.060000e-52 215
14 TraesCS7A01G064300 chr3B 77.534 365 64 15 1233 1585 564245881 564245523 1.750000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G064300 chr7A 32030941 32034647 3706 True 6846.000000 6846 100.000000 1 3707 1 chr7A.!!$R1 3706
1 TraesCS7A01G064300 chr7A 32290747 32292840 2093 True 735.666667 1589 88.184333 2 1703 3 chr7A.!!$R3 1701
2 TraesCS7A01G064300 chr7D 31954654 31958223 3569 True 1074.500000 2490 88.131500 2 3455 4 chr7D.!!$R1 3453
3 TraesCS7A01G064300 chr4A 695993878 695999648 5770 False 1281.333333 1600 92.483667 2 3428 3 chr4A.!!$F1 3426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 2651 0.910088 GGTCAGAAGGGCCAGTACCT 60.910 60.0 6.18 0.0 40.96 3.08 F
1110 3229 0.683973 CCATGGATTCCTCCTCCTCG 59.316 60.0 5.56 0.0 42.59 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 4527 0.326264 AGAAGCAAAGCCAGACGGAT 59.674 50.0 0.0 0.0 0.0 4.18 R
2721 5563 0.806492 GCTAAGCGTGCCTACTCCAC 60.806 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.985175 TTGTCCCCCAGATAAATGTCATA 57.015 39.130 0.00 0.00 0.00 2.15
75 76 4.785511 TCTAAGTCTAACTGCTGTGTCC 57.214 45.455 0.00 0.00 0.00 4.02
157 173 2.623418 TGGTCTCACCACTATCCAGT 57.377 50.000 0.00 0.00 44.79 4.00
158 174 3.750501 TGGTCTCACCACTATCCAGTA 57.249 47.619 0.00 0.00 44.79 2.74
159 175 4.055710 TGGTCTCACCACTATCCAGTAA 57.944 45.455 0.00 0.00 44.79 2.24
160 176 4.422057 TGGTCTCACCACTATCCAGTAAA 58.578 43.478 0.00 0.00 44.79 2.01
161 177 4.466370 TGGTCTCACCACTATCCAGTAAAG 59.534 45.833 0.00 0.00 44.79 1.85
162 178 4.466726 GGTCTCACCACTATCCAGTAAAGT 59.533 45.833 0.00 0.00 38.42 2.66
163 179 5.411781 GTCTCACCACTATCCAGTAAAGTG 58.588 45.833 0.00 0.00 40.24 3.16
164 180 5.185249 GTCTCACCACTATCCAGTAAAGTGA 59.815 44.000 3.37 0.00 42.59 3.41
165 181 5.958380 TCTCACCACTATCCAGTAAAGTGAT 59.042 40.000 3.37 0.00 42.59 3.06
505 526 6.952773 ACATAATACCGGCAACAAATACAT 57.047 33.333 0.00 0.00 0.00 2.29
586 609 1.285280 CCAGATGTCCCCAGGTTACA 58.715 55.000 0.00 0.00 0.00 2.41
610 1069 1.203262 ACTGGGACTAAGTAGCCCACA 60.203 52.381 13.41 1.36 41.50 4.17
667 1126 5.363939 CCTAGAGATCAATTCCAACACTCC 58.636 45.833 0.00 0.00 0.00 3.85
860 1319 2.858344 CGGAGCAAGTGGACGTTATTAG 59.142 50.000 0.00 0.00 0.00 1.73
927 2651 0.910088 GGTCAGAAGGGCCAGTACCT 60.910 60.000 6.18 0.00 40.96 3.08
928 2652 1.621622 GGTCAGAAGGGCCAGTACCTA 60.622 57.143 6.18 0.00 37.35 3.08
929 2653 2.399580 GTCAGAAGGGCCAGTACCTAT 58.600 52.381 6.18 0.00 37.35 2.57
930 2654 2.365941 GTCAGAAGGGCCAGTACCTATC 59.634 54.545 6.18 0.00 37.35 2.08
931 2655 2.247635 TCAGAAGGGCCAGTACCTATCT 59.752 50.000 6.18 0.00 37.35 1.98
934 2766 4.654262 CAGAAGGGCCAGTACCTATCTTTA 59.346 45.833 6.18 0.00 37.35 1.85
939 2771 7.317722 AGGGCCAGTACCTATCTTTATTAAG 57.682 40.000 6.18 0.00 36.32 1.85
942 2774 9.043548 GGGCCAGTACCTATCTTTATTAAGATA 57.956 37.037 4.39 12.36 46.72 1.98
1000 2832 1.207089 GTGCTAGCACATCACCCTACA 59.793 52.381 36.93 0.33 45.53 2.74
1055 3173 1.609072 GCAAAGAAGACAACACCTCCC 59.391 52.381 0.00 0.00 0.00 4.30
1092 3211 1.273327 CCAAAGGCATTGACCAGAACC 59.727 52.381 3.65 0.00 41.85 3.62
1110 3229 0.683973 CCATGGATTCCTCCTCCTCG 59.316 60.000 5.56 0.00 42.59 4.63
1128 3247 2.675056 GCAACTCCTCACAGCTGCG 61.675 63.158 15.27 3.95 0.00 5.18
1231 3350 2.731691 GAACAGCCTCCTCCGCACAA 62.732 60.000 0.00 0.00 0.00 3.33
1258 3378 2.421107 GCATGCATCCTCTCCTTCTTGA 60.421 50.000 14.21 0.00 0.00 3.02
1418 3538 3.329889 CTACACCCTGCTGGCCCA 61.330 66.667 0.00 0.00 37.83 5.36
1640 4433 2.936032 GGGGGTGCTTGAGGGAGT 60.936 66.667 0.00 0.00 0.00 3.85
1734 4527 2.419667 GTGGACTTAGCGGTGCTTTTA 58.580 47.619 0.00 0.00 40.44 1.52
1891 4698 9.109393 TCAATGCTCCAAATTAGTAGTATGTTC 57.891 33.333 0.00 0.00 0.00 3.18
1892 4699 9.113838 CAATGCTCCAAATTAGTAGTATGTTCT 57.886 33.333 0.00 0.00 0.00 3.01
1893 4700 8.668510 ATGCTCCAAATTAGTAGTATGTTCTG 57.331 34.615 0.00 0.00 0.00 3.02
1934 4742 1.439543 GATACTTCCATCAGGGGGCT 58.560 55.000 0.00 0.00 37.22 5.19
1970 4778 1.303236 TGGCGTTGCATACTGGCTT 60.303 52.632 0.00 0.00 34.04 4.35
2080 4920 1.215423 AGCCAGTCTCCAAAAACACCT 59.785 47.619 0.00 0.00 0.00 4.00
2081 4921 1.338020 GCCAGTCTCCAAAAACACCTG 59.662 52.381 0.00 0.00 0.00 4.00
2109 4949 7.993821 TTTTCACTTGATTTGCGATAACAAA 57.006 28.000 0.00 0.00 43.27 2.83
2136 4976 3.002348 CCTTTTCTGTTTGTCTGACGACC 59.998 47.826 2.98 0.00 39.47 4.79
2185 5025 1.743995 GGACGCTTTGCCGGTGTAT 60.744 57.895 1.90 0.00 0.00 2.29
2194 5034 2.192175 CCGGTGTATGCCTTCCCC 59.808 66.667 0.00 0.00 0.00 4.81
2302 5142 3.997681 GAGTGCCTCCAAAAGTAACTCTC 59.002 47.826 0.00 0.00 34.76 3.20
2310 5150 7.643579 CCTCCAAAAGTAACTCTCTCTTTTTG 58.356 38.462 0.00 0.00 38.70 2.44
2394 5236 7.698130 CGTGGTTCTGATTCTGATTTTATTTCC 59.302 37.037 0.00 0.00 0.00 3.13
2448 5290 1.078918 CTTCTGCGCCTCCATGTCA 60.079 57.895 4.18 0.00 0.00 3.58
2586 5428 1.223487 GGGCAGGGTTTCGCTCATA 59.777 57.895 0.00 0.00 0.00 2.15
2592 5434 1.757699 AGGGTTTCGCTCATAGTCCTC 59.242 52.381 0.00 0.00 0.00 3.71
2708 5550 2.493278 GCTTCAAGCTCCCATGCTAAAA 59.507 45.455 0.71 0.00 43.24 1.52
2719 5561 6.294508 GCTCCCATGCTAAAACAAGAAACTAA 60.295 38.462 0.00 0.00 0.00 2.24
2721 5563 7.657336 TCCCATGCTAAAACAAGAAACTAAAG 58.343 34.615 0.00 0.00 0.00 1.85
2722 5564 7.286775 TCCCATGCTAAAACAAGAAACTAAAGT 59.713 33.333 0.00 0.00 0.00 2.66
2726 5568 7.703328 TGCTAAAACAAGAAACTAAAGTGGAG 58.297 34.615 0.00 0.00 0.00 3.86
2753 5595 4.697756 TTAGCCGCGCCAGCAAGT 62.698 61.111 18.22 1.68 45.49 3.16
2758 5600 3.485431 CGCGCCAGCAAGTCTGAG 61.485 66.667 0.00 0.00 45.72 3.35
2759 5601 3.797546 GCGCCAGCAAGTCTGAGC 61.798 66.667 0.00 0.00 45.72 4.26
2766 5608 2.627515 AGCAAGTCTGAGCTGTTCAA 57.372 45.000 0.00 0.00 40.13 2.69
2768 5610 3.484407 AGCAAGTCTGAGCTGTTCAAAT 58.516 40.909 0.00 0.00 40.13 2.32
2769 5611 4.645535 AGCAAGTCTGAGCTGTTCAAATA 58.354 39.130 0.00 0.00 40.13 1.40
2773 5615 6.514048 GCAAGTCTGAGCTGTTCAAATAAACT 60.514 38.462 0.00 0.00 34.81 2.66
2868 5711 5.517054 GGATGTTTAGCTAGTGAAGAGTTCG 59.483 44.000 0.00 0.00 0.00 3.95
2878 5721 4.377021 AGTGAAGAGTTCGCATGTAACAA 58.623 39.130 13.35 0.00 42.49 2.83
2879 5722 4.997395 AGTGAAGAGTTCGCATGTAACAAT 59.003 37.500 13.35 1.74 42.49 2.71
2880 5723 5.470098 AGTGAAGAGTTCGCATGTAACAATT 59.530 36.000 13.35 8.37 42.49 2.32
2881 5724 6.649141 AGTGAAGAGTTCGCATGTAACAATTA 59.351 34.615 13.35 0.00 42.49 1.40
2882 5725 6.736853 GTGAAGAGTTCGCATGTAACAATTAC 59.263 38.462 13.35 0.00 39.88 1.89
2968 5966 5.327616 TGGCACATGTTCAAATTCATAGG 57.672 39.130 0.00 0.00 0.00 2.57
2969 5967 4.160065 TGGCACATGTTCAAATTCATAGGG 59.840 41.667 0.00 0.00 0.00 3.53
2970 5968 4.402155 GGCACATGTTCAAATTCATAGGGA 59.598 41.667 0.00 0.00 0.00 4.20
2971 5969 5.105392 GGCACATGTTCAAATTCATAGGGAA 60.105 40.000 0.00 0.00 40.46 3.97
2972 5970 6.397272 GCACATGTTCAAATTCATAGGGAAA 58.603 36.000 0.00 0.00 39.39 3.13
3003 6001 5.491323 AGCCTAGGATTATTCTAACAGGC 57.509 43.478 14.75 4.93 38.83 4.85
3008 6006 4.307259 AGGATTATTCTAACAGGCCCTGA 58.693 43.478 19.90 0.00 35.18 3.86
3009 6007 4.726825 AGGATTATTCTAACAGGCCCTGAA 59.273 41.667 19.90 0.60 35.18 3.02
3010 6008 5.373854 AGGATTATTCTAACAGGCCCTGAAT 59.626 40.000 19.90 9.17 35.18 2.57
3011 6009 6.562608 AGGATTATTCTAACAGGCCCTGAATA 59.437 38.462 19.90 8.11 35.18 1.75
3012 6010 7.240616 AGGATTATTCTAACAGGCCCTGAATAT 59.759 37.037 19.90 5.87 35.18 1.28
3013 6011 7.337942 GGATTATTCTAACAGGCCCTGAATATG 59.662 40.741 19.90 2.85 35.18 1.78
3014 6012 3.492102 TCTAACAGGCCCTGAATATGC 57.508 47.619 19.90 0.00 35.18 3.14
3015 6013 2.106511 TCTAACAGGCCCTGAATATGCC 59.893 50.000 19.90 0.00 45.70 4.40
3027 6025 6.265422 GCCCTGAATATGCCTACAAGTTAATT 59.735 38.462 0.00 0.00 0.00 1.40
3120 6119 9.019764 GTGTCATAATAAATGCACAATGGTAAC 57.980 33.333 0.00 0.00 0.00 2.50
3128 6127 2.029200 TGCACAATGGTAACCAATGCAG 60.029 45.455 0.78 0.00 42.12 4.41
3132 6131 5.394005 GCACAATGGTAACCAATGCAGATAA 60.394 40.000 0.00 0.00 37.91 1.75
3134 6133 6.753279 CACAATGGTAACCAATGCAGATAAAG 59.247 38.462 0.00 0.00 37.91 1.85
3135 6134 6.437162 ACAATGGTAACCAATGCAGATAAAGT 59.563 34.615 0.00 0.00 37.91 2.66
3136 6135 5.895636 TGGTAACCAATGCAGATAAAGTG 57.104 39.130 0.00 0.00 0.00 3.16
3137 6136 5.321102 TGGTAACCAATGCAGATAAAGTGT 58.679 37.500 0.00 0.00 0.00 3.55
3149 6148 8.607441 TGCAGATAAAGTGTAGGCATAAATAG 57.393 34.615 0.00 0.00 0.00 1.73
3150 6149 8.210946 TGCAGATAAAGTGTAGGCATAAATAGT 58.789 33.333 0.00 0.00 0.00 2.12
3151 6150 9.706691 GCAGATAAAGTGTAGGCATAAATAGTA 57.293 33.333 0.00 0.00 0.00 1.82
3209 6208 1.740296 AGGCGTGTACATTGGTCGC 60.740 57.895 16.79 16.79 44.95 5.19
3216 6215 4.729458 GCGTGTACATTGGTCGCATAAATT 60.729 41.667 19.26 0.00 45.01 1.82
3221 6220 8.794406 GTGTACATTGGTCGCATAAATTAAAAG 58.206 33.333 0.00 0.00 0.00 2.27
3223 6222 6.393990 ACATTGGTCGCATAAATTAAAAGCA 58.606 32.000 0.00 0.00 0.00 3.91
3227 6226 4.265320 GGTCGCATAAATTAAAAGCAGTGC 59.735 41.667 7.13 7.13 0.00 4.40
3232 6231 6.089283 CGCATAAATTAAAAGCAGTGCAAGAA 59.911 34.615 19.20 6.06 0.00 2.52
3240 6239 1.869767 AGCAGTGCAAGAAAAGAGACG 59.130 47.619 19.20 0.00 0.00 4.18
3247 6246 4.024893 GTGCAAGAAAAGAGACGATCAACA 60.025 41.667 0.00 0.00 0.00 3.33
3250 6249 5.971202 GCAAGAAAAGAGACGATCAACAAAA 59.029 36.000 0.00 0.00 0.00 2.44
3258 6257 5.413833 AGAGACGATCAACAAAATTGAGCAT 59.586 36.000 5.82 0.00 34.78 3.79
3259 6258 5.396484 AGACGATCAACAAAATTGAGCATG 58.604 37.500 5.82 0.00 34.78 4.06
3260 6259 4.487948 ACGATCAACAAAATTGAGCATGG 58.512 39.130 5.82 0.00 34.78 3.66
3271 6270 1.377725 GAGCATGGGGTGTGACCTG 60.378 63.158 0.00 0.00 38.64 4.00
3275 6274 1.075482 ATGGGGTGTGACCTGCAAG 59.925 57.895 0.00 0.00 38.64 4.01
3294 6295 4.093556 GCAAGAGTACATAACAGAAGTGGC 59.906 45.833 0.00 0.00 0.00 5.01
3307 6308 4.887071 ACAGAAGTGGCAATAAGTGTCAAA 59.113 37.500 0.00 0.00 45.43 2.69
3382 6390 9.914834 TGGGTTTACTAAAATATATGCACTTCT 57.085 29.630 0.00 0.00 0.00 2.85
3419 6435 3.864789 ATTGACTGGTCCTGAAGTTGT 57.135 42.857 2.23 0.00 0.00 3.32
3429 6445 8.603304 ACTGGTCCTGAAGTTGTATAGTTAATT 58.397 33.333 2.23 0.00 0.00 1.40
3430 6446 9.099454 CTGGTCCTGAAGTTGTATAGTTAATTC 57.901 37.037 0.00 0.00 0.00 2.17
3431 6447 8.598916 TGGTCCTGAAGTTGTATAGTTAATTCA 58.401 33.333 0.00 0.00 0.00 2.57
3432 6448 9.099454 GGTCCTGAAGTTGTATAGTTAATTCAG 57.901 37.037 0.00 0.00 41.01 3.02
3455 6471 8.498358 TCAGAAAAATTATATGCAGCATACTCG 58.502 33.333 17.64 3.73 0.00 4.18
3456 6472 8.285394 CAGAAAAATTATATGCAGCATACTCGT 58.715 33.333 17.64 4.41 0.00 4.18
3457 6473 8.840321 AGAAAAATTATATGCAGCATACTCGTT 58.160 29.630 17.64 7.24 0.00 3.85
3459 6475 9.878599 AAAAATTATATGCAGCATACTCGTTAC 57.121 29.630 17.64 0.00 0.00 2.50
3460 6476 8.601845 AAATTATATGCAGCATACTCGTTACA 57.398 30.769 17.64 0.00 0.00 2.41
3461 6477 8.777865 AATTATATGCAGCATACTCGTTACAT 57.222 30.769 17.64 2.13 0.00 2.29
3462 6478 7.812309 TTATATGCAGCATACTCGTTACATC 57.188 36.000 17.64 0.00 0.00 3.06
3463 6479 3.518634 TGCAGCATACTCGTTACATCA 57.481 42.857 0.00 0.00 0.00 3.07
3464 6480 3.186909 TGCAGCATACTCGTTACATCAC 58.813 45.455 0.00 0.00 0.00 3.06
3465 6481 3.119137 TGCAGCATACTCGTTACATCACT 60.119 43.478 0.00 0.00 0.00 3.41
3466 6482 4.097286 TGCAGCATACTCGTTACATCACTA 59.903 41.667 0.00 0.00 0.00 2.74
3467 6483 4.677378 GCAGCATACTCGTTACATCACTAG 59.323 45.833 0.00 0.00 0.00 2.57
3468 6484 4.677378 CAGCATACTCGTTACATCACTAGC 59.323 45.833 0.00 0.00 0.00 3.42
3469 6485 3.664486 GCATACTCGTTACATCACTAGCG 59.336 47.826 0.00 0.00 0.00 4.26
3470 6486 4.554134 GCATACTCGTTACATCACTAGCGA 60.554 45.833 0.00 0.00 0.00 4.93
3471 6487 3.677190 ACTCGTTACATCACTAGCGAG 57.323 47.619 9.72 9.72 46.84 5.03
3472 6488 3.677190 CTCGTTACATCACTAGCGAGT 57.323 47.619 0.00 0.00 40.58 4.18
3473 6489 4.017380 CTCGTTACATCACTAGCGAGTT 57.983 45.455 0.00 0.00 40.58 3.01
3474 6490 4.012319 TCGTTACATCACTAGCGAGTTC 57.988 45.455 0.00 0.00 31.73 3.01
3475 6491 3.688185 TCGTTACATCACTAGCGAGTTCT 59.312 43.478 0.00 0.00 31.73 3.01
3476 6492 4.872124 TCGTTACATCACTAGCGAGTTCTA 59.128 41.667 0.00 0.00 31.73 2.10
3477 6493 4.962751 CGTTACATCACTAGCGAGTTCTAC 59.037 45.833 0.00 0.00 31.73 2.59
3478 6494 5.446875 CGTTACATCACTAGCGAGTTCTACA 60.447 44.000 0.00 0.00 31.73 2.74
3479 6495 6.496571 GTTACATCACTAGCGAGTTCTACAT 58.503 40.000 0.00 0.00 31.73 2.29
3480 6496 4.926244 ACATCACTAGCGAGTTCTACATG 58.074 43.478 0.00 0.00 31.73 3.21
3481 6497 4.202060 ACATCACTAGCGAGTTCTACATGG 60.202 45.833 0.00 0.00 31.73 3.66
3482 6498 3.617284 TCACTAGCGAGTTCTACATGGA 58.383 45.455 0.00 0.00 31.73 3.41
3483 6499 3.628032 TCACTAGCGAGTTCTACATGGAG 59.372 47.826 0.00 0.00 31.73 3.86
3484 6500 3.628032 CACTAGCGAGTTCTACATGGAGA 59.372 47.826 2.55 2.55 31.73 3.71
3485 6501 4.277174 CACTAGCGAGTTCTACATGGAGAT 59.723 45.833 8.90 0.00 31.73 2.75
3486 6502 4.890581 ACTAGCGAGTTCTACATGGAGATT 59.109 41.667 8.90 0.00 28.61 2.40
3487 6503 6.017026 CACTAGCGAGTTCTACATGGAGATTA 60.017 42.308 8.90 0.00 31.73 1.75
3488 6504 6.717540 ACTAGCGAGTTCTACATGGAGATTAT 59.282 38.462 8.90 0.00 28.61 1.28
3489 6505 6.019779 AGCGAGTTCTACATGGAGATTATC 57.980 41.667 8.90 6.49 0.00 1.75
3490 6506 5.536538 AGCGAGTTCTACATGGAGATTATCA 59.463 40.000 8.90 0.00 0.00 2.15
3491 6507 5.861251 GCGAGTTCTACATGGAGATTATCAG 59.139 44.000 8.90 5.53 0.00 2.90
3492 6508 6.294231 GCGAGTTCTACATGGAGATTATCAGA 60.294 42.308 8.90 0.00 0.00 3.27
3493 6509 7.081349 CGAGTTCTACATGGAGATTATCAGAC 58.919 42.308 8.90 1.77 0.00 3.51
3494 6510 7.255277 CGAGTTCTACATGGAGATTATCAGACA 60.255 40.741 8.90 0.00 0.00 3.41
3495 6511 8.311395 AGTTCTACATGGAGATTATCAGACAA 57.689 34.615 8.90 0.00 0.00 3.18
3496 6512 8.762645 AGTTCTACATGGAGATTATCAGACAAA 58.237 33.333 8.90 0.00 0.00 2.83
3497 6513 8.821894 GTTCTACATGGAGATTATCAGACAAAC 58.178 37.037 8.90 0.00 0.00 2.93
3498 6514 8.078060 TCTACATGGAGATTATCAGACAAACA 57.922 34.615 2.55 0.00 0.00 2.83
3499 6515 6.992063 ACATGGAGATTATCAGACAAACAC 57.008 37.500 0.00 0.00 0.00 3.32
3500 6516 6.715280 ACATGGAGATTATCAGACAAACACT 58.285 36.000 0.00 0.00 0.00 3.55
3501 6517 6.820656 ACATGGAGATTATCAGACAAACACTC 59.179 38.462 0.00 0.00 0.00 3.51
3502 6518 6.358974 TGGAGATTATCAGACAAACACTCA 57.641 37.500 0.00 0.00 0.00 3.41
3503 6519 6.166279 TGGAGATTATCAGACAAACACTCAC 58.834 40.000 0.00 0.00 0.00 3.51
3504 6520 5.582665 GGAGATTATCAGACAAACACTCACC 59.417 44.000 0.00 0.00 0.00 4.02
3505 6521 6.114187 AGATTATCAGACAAACACTCACCA 57.886 37.500 0.00 0.00 0.00 4.17
3506 6522 6.169094 AGATTATCAGACAAACACTCACCAG 58.831 40.000 0.00 0.00 0.00 4.00
3507 6523 1.953559 TCAGACAAACACTCACCAGC 58.046 50.000 0.00 0.00 0.00 4.85
3508 6524 1.209261 TCAGACAAACACTCACCAGCA 59.791 47.619 0.00 0.00 0.00 4.41
3509 6525 2.016318 CAGACAAACACTCACCAGCAA 58.984 47.619 0.00 0.00 0.00 3.91
3510 6526 2.620115 CAGACAAACACTCACCAGCAAT 59.380 45.455 0.00 0.00 0.00 3.56
3511 6527 2.880890 AGACAAACACTCACCAGCAATC 59.119 45.455 0.00 0.00 0.00 2.67
3512 6528 2.618241 GACAAACACTCACCAGCAATCA 59.382 45.455 0.00 0.00 0.00 2.57
3513 6529 2.620115 ACAAACACTCACCAGCAATCAG 59.380 45.455 0.00 0.00 0.00 2.90
3514 6530 1.242076 AACACTCACCAGCAATCAGC 58.758 50.000 0.00 0.00 46.19 4.26
3528 6544 4.296690 GCAATCAGCTCAAATATGAAGGC 58.703 43.478 0.00 0.00 41.15 4.35
3529 6545 4.202080 GCAATCAGCTCAAATATGAAGGCA 60.202 41.667 0.00 0.00 41.15 4.75
3530 6546 5.279384 CAATCAGCTCAAATATGAAGGCAC 58.721 41.667 0.00 0.00 34.49 5.01
3531 6547 3.954200 TCAGCTCAAATATGAAGGCACA 58.046 40.909 0.00 0.00 34.49 4.57
3532 6548 4.334552 TCAGCTCAAATATGAAGGCACAA 58.665 39.130 0.00 0.00 34.49 3.33
3533 6549 4.951715 TCAGCTCAAATATGAAGGCACAAT 59.048 37.500 0.00 0.00 34.49 2.71
3534 6550 6.121590 TCAGCTCAAATATGAAGGCACAATA 58.878 36.000 0.00 0.00 34.49 1.90
3535 6551 6.602803 TCAGCTCAAATATGAAGGCACAATAA 59.397 34.615 0.00 0.00 34.49 1.40
3536 6552 6.916387 CAGCTCAAATATGAAGGCACAATAAG 59.084 38.462 0.00 0.00 34.49 1.73
3537 6553 6.040166 AGCTCAAATATGAAGGCACAATAAGG 59.960 38.462 0.00 0.00 34.49 2.69
3538 6554 6.147864 TCAAATATGAAGGCACAATAAGGC 57.852 37.500 0.00 0.00 30.99 4.35
3539 6555 5.655974 TCAAATATGAAGGCACAATAAGGCA 59.344 36.000 0.00 0.00 30.99 4.75
3540 6556 5.779529 AATATGAAGGCACAATAAGGCAG 57.220 39.130 0.00 0.00 0.00 4.85
3541 6557 2.877097 TGAAGGCACAATAAGGCAGA 57.123 45.000 0.00 0.00 0.00 4.26
3542 6558 3.153369 TGAAGGCACAATAAGGCAGAA 57.847 42.857 0.00 0.00 0.00 3.02
3543 6559 3.084039 TGAAGGCACAATAAGGCAGAAG 58.916 45.455 0.00 0.00 0.00 2.85
3544 6560 2.134789 AGGCACAATAAGGCAGAAGG 57.865 50.000 0.00 0.00 0.00 3.46
3545 6561 1.635487 AGGCACAATAAGGCAGAAGGA 59.365 47.619 0.00 0.00 0.00 3.36
3546 6562 2.041620 AGGCACAATAAGGCAGAAGGAA 59.958 45.455 0.00 0.00 0.00 3.36
3547 6563 2.164422 GGCACAATAAGGCAGAAGGAAC 59.836 50.000 0.00 0.00 0.00 3.62
3548 6564 2.164422 GCACAATAAGGCAGAAGGAACC 59.836 50.000 0.00 0.00 0.00 3.62
3549 6565 2.755103 CACAATAAGGCAGAAGGAACCC 59.245 50.000 0.00 0.00 0.00 4.11
3550 6566 2.378547 ACAATAAGGCAGAAGGAACCCA 59.621 45.455 0.00 0.00 0.00 4.51
3551 6567 3.181423 ACAATAAGGCAGAAGGAACCCAA 60.181 43.478 0.00 0.00 0.00 4.12
3552 6568 3.825908 ATAAGGCAGAAGGAACCCAAA 57.174 42.857 0.00 0.00 0.00 3.28
3553 6569 2.470057 AAGGCAGAAGGAACCCAAAA 57.530 45.000 0.00 0.00 0.00 2.44
3554 6570 2.001076 AGGCAGAAGGAACCCAAAAG 57.999 50.000 0.00 0.00 0.00 2.27
3555 6571 0.318441 GGCAGAAGGAACCCAAAAGC 59.682 55.000 0.00 0.00 0.00 3.51
3556 6572 1.332195 GCAGAAGGAACCCAAAAGCT 58.668 50.000 0.00 0.00 0.00 3.74
3557 6573 1.688735 GCAGAAGGAACCCAAAAGCTT 59.311 47.619 0.00 0.00 0.00 3.74
3558 6574 2.103094 GCAGAAGGAACCCAAAAGCTTT 59.897 45.455 5.69 5.69 0.00 3.51
3559 6575 3.432186 GCAGAAGGAACCCAAAAGCTTTT 60.432 43.478 18.74 18.74 0.00 2.27
3560 6576 4.371786 CAGAAGGAACCCAAAAGCTTTTC 58.628 43.478 21.45 10.16 0.00 2.29
3561 6577 4.030216 AGAAGGAACCCAAAAGCTTTTCA 58.970 39.130 21.45 0.00 0.00 2.69
3562 6578 4.100035 AGAAGGAACCCAAAAGCTTTTCAG 59.900 41.667 21.45 16.96 0.00 3.02
3563 6579 3.374764 AGGAACCCAAAAGCTTTTCAGT 58.625 40.909 21.45 17.57 0.00 3.41
3564 6580 3.384789 AGGAACCCAAAAGCTTTTCAGTC 59.615 43.478 21.45 14.98 0.00 3.51
3565 6581 3.372060 GAACCCAAAAGCTTTTCAGTCG 58.628 45.455 21.45 10.02 0.00 4.18
3566 6582 1.067060 ACCCAAAAGCTTTTCAGTCGC 59.933 47.619 21.45 0.00 0.00 5.19
3567 6583 1.602920 CCCAAAAGCTTTTCAGTCGCC 60.603 52.381 21.45 0.00 0.00 5.54
3568 6584 1.338020 CCAAAAGCTTTTCAGTCGCCT 59.662 47.619 21.45 0.00 0.00 5.52
3569 6585 2.552315 CCAAAAGCTTTTCAGTCGCCTA 59.448 45.455 21.45 0.00 0.00 3.93
3570 6586 3.555518 CAAAAGCTTTTCAGTCGCCTAC 58.444 45.455 21.45 0.00 0.00 3.18
3571 6587 1.809684 AAGCTTTTCAGTCGCCTACC 58.190 50.000 0.00 0.00 0.00 3.18
3572 6588 0.685097 AGCTTTTCAGTCGCCTACCA 59.315 50.000 0.00 0.00 0.00 3.25
3573 6589 1.279271 AGCTTTTCAGTCGCCTACCAT 59.721 47.619 0.00 0.00 0.00 3.55
3574 6590 1.398390 GCTTTTCAGTCGCCTACCATG 59.602 52.381 0.00 0.00 0.00 3.66
3575 6591 2.935238 GCTTTTCAGTCGCCTACCATGA 60.935 50.000 0.00 0.00 0.00 3.07
3576 6592 2.380084 TTTCAGTCGCCTACCATGAC 57.620 50.000 0.00 0.00 0.00 3.06
3577 6593 0.535335 TTCAGTCGCCTACCATGACC 59.465 55.000 0.00 0.00 33.09 4.02
3578 6594 1.144057 CAGTCGCCTACCATGACCC 59.856 63.158 0.00 0.00 33.09 4.46
3579 6595 1.305802 AGTCGCCTACCATGACCCA 60.306 57.895 0.00 0.00 33.09 4.51
3580 6596 1.153429 GTCGCCTACCATGACCCAC 60.153 63.158 0.00 0.00 0.00 4.61
3581 6597 1.305802 TCGCCTACCATGACCCACT 60.306 57.895 0.00 0.00 0.00 4.00
3582 6598 1.153369 CGCCTACCATGACCCACTG 60.153 63.158 0.00 0.00 0.00 3.66
3583 6599 1.613317 CGCCTACCATGACCCACTGA 61.613 60.000 0.00 0.00 0.00 3.41
3584 6600 0.179000 GCCTACCATGACCCACTGAG 59.821 60.000 0.00 0.00 0.00 3.35
3585 6601 0.833287 CCTACCATGACCCACTGAGG 59.167 60.000 0.00 0.00 37.03 3.86
3586 6602 0.179000 CTACCATGACCCACTGAGGC 59.821 60.000 0.00 0.00 35.39 4.70
3587 6603 1.271840 TACCATGACCCACTGAGGCC 61.272 60.000 0.00 0.00 35.39 5.19
3588 6604 2.273449 CATGACCCACTGAGGCCC 59.727 66.667 0.00 0.00 35.39 5.80
3589 6605 2.204136 ATGACCCACTGAGGCCCA 60.204 61.111 0.00 0.00 35.39 5.36
3590 6606 2.606587 ATGACCCACTGAGGCCCAC 61.607 63.158 0.00 0.00 35.39 4.61
3591 6607 2.930562 GACCCACTGAGGCCCACT 60.931 66.667 0.00 0.00 35.39 4.00
3592 6608 3.252284 ACCCACTGAGGCCCACTG 61.252 66.667 0.00 0.46 35.39 3.66
3593 6609 2.930019 CCCACTGAGGCCCACTGA 60.930 66.667 0.00 0.00 35.39 3.41
3594 6610 2.667418 CCACTGAGGCCCACTGAG 59.333 66.667 0.00 0.00 36.40 3.35
3595 6611 2.667418 CACTGAGGCCCACTGAGG 59.333 66.667 0.00 0.00 34.38 3.86
3596 6612 1.915266 CACTGAGGCCCACTGAGGA 60.915 63.158 0.00 0.00 41.22 3.71
3597 6613 1.915769 ACTGAGGCCCACTGAGGAC 60.916 63.158 0.00 0.00 41.22 3.85
3598 6614 1.915266 CTGAGGCCCACTGAGGACA 60.915 63.158 0.00 0.00 37.41 4.02
3599 6615 1.461268 TGAGGCCCACTGAGGACAA 60.461 57.895 0.00 0.00 37.41 3.18
3600 6616 1.059584 TGAGGCCCACTGAGGACAAA 61.060 55.000 0.00 0.00 37.41 2.83
3601 6617 0.110486 GAGGCCCACTGAGGACAAAA 59.890 55.000 0.00 0.00 37.41 2.44
3602 6618 0.111253 AGGCCCACTGAGGACAAAAG 59.889 55.000 0.00 0.00 37.41 2.27
3603 6619 1.527433 GGCCCACTGAGGACAAAAGC 61.527 60.000 0.00 0.00 41.22 3.51
3604 6620 0.823356 GCCCACTGAGGACAAAAGCA 60.823 55.000 0.00 0.00 41.22 3.91
3605 6621 1.915141 CCCACTGAGGACAAAAGCAT 58.085 50.000 0.00 0.00 41.22 3.79
3606 6622 1.815003 CCCACTGAGGACAAAAGCATC 59.185 52.381 0.00 0.00 41.22 3.91
3607 6623 1.815003 CCACTGAGGACAAAAGCATCC 59.185 52.381 0.00 0.00 41.22 3.51
3608 6624 2.507484 CACTGAGGACAAAAGCATCCA 58.493 47.619 0.00 0.00 37.47 3.41
3609 6625 3.087031 CACTGAGGACAAAAGCATCCAT 58.913 45.455 0.00 0.00 37.47 3.41
3610 6626 3.087031 ACTGAGGACAAAAGCATCCATG 58.913 45.455 0.00 0.00 37.47 3.66
3611 6627 3.087031 CTGAGGACAAAAGCATCCATGT 58.913 45.455 0.00 0.00 37.47 3.21
3612 6628 2.821378 TGAGGACAAAAGCATCCATGTG 59.179 45.455 0.00 0.00 37.47 3.21
3613 6629 1.547372 AGGACAAAAGCATCCATGTGC 59.453 47.619 0.10 0.10 45.38 4.57
3619 6635 4.489249 GCATCCATGTGCAGTTGC 57.511 55.556 3.55 0.00 44.43 4.17
3620 6636 1.888018 GCATCCATGTGCAGTTGCT 59.112 52.632 5.62 0.00 44.43 3.91
3621 6637 0.179145 GCATCCATGTGCAGTTGCTC 60.179 55.000 5.62 2.44 44.43 4.26
3622 6638 0.098200 CATCCATGTGCAGTTGCTCG 59.902 55.000 5.62 0.00 42.66 5.03
3623 6639 0.036105 ATCCATGTGCAGTTGCTCGA 60.036 50.000 5.62 0.00 42.66 4.04
3624 6640 0.036105 TCCATGTGCAGTTGCTCGAT 60.036 50.000 5.62 0.00 42.66 3.59
3625 6641 0.806868 CCATGTGCAGTTGCTCGATT 59.193 50.000 5.62 0.00 42.66 3.34
3626 6642 2.009051 CCATGTGCAGTTGCTCGATTA 58.991 47.619 5.62 0.00 42.66 1.75
3627 6643 2.031314 CCATGTGCAGTTGCTCGATTAG 59.969 50.000 5.62 0.00 42.66 1.73
3628 6644 2.741759 TGTGCAGTTGCTCGATTAGA 57.258 45.000 5.62 0.00 42.66 2.10
3639 6655 6.721571 TTGCTCGATTAGAGTAAACCAAAG 57.278 37.500 0.00 0.00 46.18 2.77
3640 6656 6.460781 TTGCTCGATTAGAGTAAACCAAAGA 58.539 36.000 0.00 0.00 46.18 2.52
3641 6657 6.590292 TTGCTCGATTAGAGTAAACCAAAGAG 59.410 38.462 0.00 0.00 46.18 2.85
3642 6658 8.270489 TTGCTCGATTAGAGTAAACCAAAGAGG 61.270 40.741 0.00 0.00 46.18 3.69
3643 6659 5.416947 TCGATTAGAGTAAACCAAAGAGGC 58.583 41.667 0.00 0.00 43.14 4.70
3644 6660 4.571176 CGATTAGAGTAAACCAAAGAGGCC 59.429 45.833 0.00 0.00 43.14 5.19
3645 6661 5.627040 CGATTAGAGTAAACCAAAGAGGCCT 60.627 44.000 3.86 3.86 43.14 5.19
3646 6662 5.578157 TTAGAGTAAACCAAAGAGGCCTT 57.422 39.130 6.77 0.00 43.14 4.35
3647 6663 4.022413 AGAGTAAACCAAAGAGGCCTTC 57.978 45.455 6.77 0.00 43.14 3.46
3648 6664 3.653352 AGAGTAAACCAAAGAGGCCTTCT 59.347 43.478 6.77 2.22 43.14 2.85
3649 6665 3.753797 GAGTAAACCAAAGAGGCCTTCTG 59.246 47.826 6.77 4.55 43.14 3.02
3650 6666 3.394606 AGTAAACCAAAGAGGCCTTCTGA 59.605 43.478 6.77 0.00 43.14 3.27
3651 6667 2.575805 AACCAAAGAGGCCTTCTGAG 57.424 50.000 6.77 0.00 43.14 3.35
3652 6668 0.037447 ACCAAAGAGGCCTTCTGAGC 59.963 55.000 6.77 0.00 43.14 4.26
3653 6669 0.037303 CCAAAGAGGCCTTCTGAGCA 59.963 55.000 6.77 0.00 35.91 4.26
3654 6670 1.163554 CAAAGAGGCCTTCTGAGCAC 58.836 55.000 6.77 0.00 35.91 4.40
3655 6671 1.063183 AAAGAGGCCTTCTGAGCACT 58.937 50.000 6.77 0.00 35.91 4.40
3656 6672 1.063183 AAGAGGCCTTCTGAGCACTT 58.937 50.000 6.77 0.00 35.91 3.16
3657 6673 0.324285 AGAGGCCTTCTGAGCACTTG 59.676 55.000 6.77 0.00 33.93 3.16
3658 6674 1.303155 AGGCCTTCTGAGCACTTGC 60.303 57.895 0.00 0.00 42.49 4.01
3670 6686 2.159327 GCACTTGCTTTTGGATTGCT 57.841 45.000 0.00 0.00 38.21 3.91
3671 6687 2.064014 GCACTTGCTTTTGGATTGCTC 58.936 47.619 0.00 0.00 38.21 4.26
3672 6688 2.680577 CACTTGCTTTTGGATTGCTCC 58.319 47.619 0.00 0.00 42.45 4.70
3673 6689 5.663477 GCACTTGCTTTTGGATTGCTCCA 62.663 47.826 0.00 0.00 43.17 3.86
3686 6702 5.416639 TGGATTGCTCCACATATATCAATGC 59.583 40.000 6.96 6.96 46.95 3.56
3687 6703 5.163581 GGATTGCTCCACATATATCAATGCC 60.164 44.000 1.07 0.47 41.64 4.40
3688 6704 4.370094 TGCTCCACATATATCAATGCCA 57.630 40.909 0.00 0.00 0.00 4.92
3689 6705 4.925836 TGCTCCACATATATCAATGCCAT 58.074 39.130 0.00 0.00 0.00 4.40
3690 6706 6.064735 TGCTCCACATATATCAATGCCATA 57.935 37.500 0.00 0.00 0.00 2.74
3691 6707 5.882000 TGCTCCACATATATCAATGCCATAC 59.118 40.000 0.00 0.00 0.00 2.39
3692 6708 5.882000 GCTCCACATATATCAATGCCATACA 59.118 40.000 0.00 0.00 0.00 2.29
3693 6709 6.544931 GCTCCACATATATCAATGCCATACAT 59.455 38.462 0.00 0.00 42.30 2.29
3694 6710 7.716560 GCTCCACATATATCAATGCCATACATA 59.283 37.037 0.00 0.00 38.34 2.29
3695 6711 9.617523 CTCCACATATATCAATGCCATACATAA 57.382 33.333 0.00 0.00 38.34 1.90
3696 6712 9.972106 TCCACATATATCAATGCCATACATAAA 57.028 29.630 0.00 0.00 38.34 1.40
3705 6721 9.801873 ATCAATGCCATACATAAAAGTACAAAC 57.198 29.630 0.00 0.00 38.34 2.93
3706 6722 8.797438 TCAATGCCATACATAAAAGTACAAACA 58.203 29.630 0.00 0.00 38.34 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.295020 CTGGGGGACAATCCAGGTTA 58.705 55.000 0.00 0.00 44.99 2.85
31 32 8.083828 AGATCCATCTGTTTGTACTTCTATGT 57.916 34.615 0.00 0.00 35.42 2.29
75 76 5.767269 ACTTGACAGCGACATCTATATGAG 58.233 41.667 0.00 0.00 36.54 2.90
151 167 7.092891 TGGAGACACAATATCACTTTACTGGAT 60.093 37.037 0.00 0.00 33.40 3.41
152 168 6.212589 TGGAGACACAATATCACTTTACTGGA 59.787 38.462 0.00 0.00 33.40 3.86
153 169 6.406370 TGGAGACACAATATCACTTTACTGG 58.594 40.000 0.00 0.00 33.40 4.00
296 317 5.700402 AGAGGCACCAAAGACACTTATAT 57.300 39.130 0.00 0.00 0.00 0.86
438 459 5.762711 TCGTTGCTGGTATATGCACAAATAT 59.237 36.000 0.00 0.00 39.05 1.28
460 481 0.390603 TATTGAGGGTGTTGGCGTCG 60.391 55.000 0.00 0.00 0.00 5.12
505 526 0.988832 ATTGTACGAAGGGAGGCCAA 59.011 50.000 5.01 0.00 0.00 4.52
586 609 2.838813 GGGCTACTTAGTCCCAGTTTCT 59.161 50.000 4.45 0.00 42.26 2.52
624 1083 0.249398 CTAACCTCCTGACAACCCGG 59.751 60.000 0.00 0.00 0.00 5.73
860 1319 5.621104 CGAATGGGCATACTCTGTCTATCTC 60.621 48.000 0.00 0.00 27.91 2.75
946 2778 6.013812 GGGCATTAATCTGTCTCTTCTCCTAT 60.014 42.308 0.00 0.00 0.00 2.57
962 2794 2.158971 GCACAATTTCCCGGGCATTAAT 60.159 45.455 18.49 9.81 0.00 1.40
1000 2832 7.228308 CCAACAAATAACAAATTGTGAACCCAT 59.772 33.333 0.00 0.00 39.57 4.00
1092 3211 0.034616 GCGAGGAGGAGGAATCCATG 59.965 60.000 0.61 0.00 39.47 3.66
1110 3229 2.675056 CGCAGCTGTGAGGAGTTGC 61.675 63.158 22.94 0.00 44.32 4.17
1128 3247 0.536006 AGGTTGAGTTGGCTGCTGTC 60.536 55.000 0.00 0.00 0.00 3.51
1231 3350 0.321021 GAGAGGATGCATGCGAGGAT 59.679 55.000 14.09 0.00 0.00 3.24
1258 3378 4.760047 GCTGGACATGGTCGCCGT 62.760 66.667 0.00 0.00 32.65 5.68
1449 3569 4.662961 CACGGCTGCGAGACCACA 62.663 66.667 0.00 0.00 0.00 4.17
1668 4461 3.439857 TCTTTCTGGCCAATAAGCAGT 57.560 42.857 17.65 0.00 0.00 4.40
1734 4527 0.326264 AGAAGCAAAGCCAGACGGAT 59.674 50.000 0.00 0.00 0.00 4.18
1891 4698 6.486657 TCCAGTCCTCACAAATTTTAGTTCAG 59.513 38.462 0.00 0.00 0.00 3.02
1892 4699 6.361433 TCCAGTCCTCACAAATTTTAGTTCA 58.639 36.000 0.00 0.00 0.00 3.18
1893 4700 6.877611 TCCAGTCCTCACAAATTTTAGTTC 57.122 37.500 0.00 0.00 0.00 3.01
1934 4742 3.634568 CCACACGGCTTTATGTCAAAA 57.365 42.857 0.00 0.00 0.00 2.44
1949 4757 1.501741 CCAGTATGCAACGCCACAC 59.498 57.895 0.00 0.00 31.97 3.82
1970 4778 2.766263 AGGGATTTGAGCGACTGTGATA 59.234 45.455 0.00 0.00 0.00 2.15
2109 4949 6.094881 TCGTCAGACAAACAGAAAAGGAAAAT 59.905 34.615 0.41 0.00 0.00 1.82
2151 4991 2.210013 TCCAGCCTGCTCTTCACGT 61.210 57.895 0.00 0.00 0.00 4.49
2153 4993 1.739562 CGTCCAGCCTGCTCTTCAC 60.740 63.158 0.00 0.00 0.00 3.18
2194 5034 3.117171 GTCAGCAGAGCAGCCACG 61.117 66.667 0.00 0.00 34.23 4.94
2287 5127 6.546034 CCCAAAAAGAGAGAGTTACTTTTGGA 59.454 38.462 20.32 0.00 41.09 3.53
2302 5142 6.805713 ACAAGACATTAACACCCAAAAAGAG 58.194 36.000 0.00 0.00 0.00 2.85
2310 5150 6.744112 TGATTTGAACAAGACATTAACACCC 58.256 36.000 0.00 0.00 0.00 4.61
2356 5197 2.480419 CAGAACCACGAACTCATCAACC 59.520 50.000 0.00 0.00 0.00 3.77
2394 5236 2.807045 GTCGCTGACGCTGTCTGG 60.807 66.667 13.99 7.39 39.84 3.86
2586 5428 1.001641 GGCAGCAACCATGAGGACT 60.002 57.895 0.00 0.00 38.69 3.85
2708 5550 5.163237 TGCCTACTCCACTTTAGTTTCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
2719 5561 1.204941 CTAAGCGTGCCTACTCCACTT 59.795 52.381 0.00 0.00 0.00 3.16
2721 5563 0.806492 GCTAAGCGTGCCTACTCCAC 60.806 60.000 0.00 0.00 0.00 4.02
2722 5564 1.515954 GCTAAGCGTGCCTACTCCA 59.484 57.895 0.00 0.00 0.00 3.86
2743 5585 2.047465 AGCTCAGACTTGCTGGCG 60.047 61.111 0.00 0.00 44.98 5.69
2749 5591 6.963796 AGTTTATTTGAACAGCTCAGACTTG 58.036 36.000 0.00 0.00 34.81 3.16
2778 5620 1.748950 TGCGGCAAAGCATGATAAGA 58.251 45.000 0.00 0.00 42.92 2.10
2786 5628 1.514678 CCTTACAGTGCGGCAAAGCA 61.515 55.000 3.23 0.00 45.96 3.91
2834 5677 3.549794 AGCTAAACATCCCAGCAGATTC 58.450 45.455 0.00 0.00 37.78 2.52
2836 5679 3.713764 ACTAGCTAAACATCCCAGCAGAT 59.286 43.478 0.00 0.00 37.78 2.90
2838 5681 3.118629 TCACTAGCTAAACATCCCAGCAG 60.119 47.826 0.00 0.00 37.78 4.24
2843 5686 5.346181 ACTCTTCACTAGCTAAACATCCC 57.654 43.478 0.00 0.00 0.00 3.85
2879 5722 9.938280 AGCAGTTCAAATAGTGTAATACTGTAA 57.062 29.630 0.00 0.00 40.65 2.41
2881 5724 9.938280 TTAGCAGTTCAAATAGTGTAATACTGT 57.062 29.630 0.00 0.00 40.65 3.55
2924 5767 3.239449 TGGGCCGTGTCTATATCTGAAT 58.761 45.455 0.00 0.00 0.00 2.57
2927 5770 2.354103 CCATGGGCCGTGTCTATATCTG 60.354 54.545 23.64 1.86 0.00 2.90
2928 5771 1.902508 CCATGGGCCGTGTCTATATCT 59.097 52.381 23.64 0.00 0.00 1.98
2949 5947 7.605449 ACTTTCCCTATGAATTTGAACATGTG 58.395 34.615 0.00 0.00 31.67 3.21
2950 5948 7.781324 ACTTTCCCTATGAATTTGAACATGT 57.219 32.000 0.00 0.00 31.67 3.21
2951 5949 8.960591 ACTACTTTCCCTATGAATTTGAACATG 58.039 33.333 0.00 0.00 31.67 3.21
2958 5956 9.794719 GGCTAATACTACTTTCCCTATGAATTT 57.205 33.333 0.00 0.00 31.67 1.82
2959 5957 9.172060 AGGCTAATACTACTTTCCCTATGAATT 57.828 33.333 0.00 0.00 31.67 2.17
2960 5958 8.743636 AGGCTAATACTACTTTCCCTATGAAT 57.256 34.615 0.00 0.00 31.67 2.57
2961 5959 9.310449 CTAGGCTAATACTACTTTCCCTATGAA 57.690 37.037 0.00 0.00 0.00 2.57
2962 5960 7.894364 CCTAGGCTAATACTACTTTCCCTATGA 59.106 40.741 0.00 0.00 0.00 2.15
2963 5961 7.894364 TCCTAGGCTAATACTACTTTCCCTATG 59.106 40.741 2.96 0.00 0.00 2.23
2964 5962 8.009242 TCCTAGGCTAATACTACTTTCCCTAT 57.991 38.462 2.96 0.00 0.00 2.57
2965 5963 7.412203 TCCTAGGCTAATACTACTTTCCCTA 57.588 40.000 2.96 0.00 0.00 3.53
2966 5964 6.290870 TCCTAGGCTAATACTACTTTCCCT 57.709 41.667 2.96 0.00 0.00 4.20
2967 5965 7.556416 AATCCTAGGCTAATACTACTTTCCC 57.444 40.000 2.96 0.00 0.00 3.97
2978 5976 7.311360 GGCCTGTTAGAATAATCCTAGGCTAAT 60.311 40.741 2.96 0.00 38.61 1.73
2982 5980 4.565861 GGGCCTGTTAGAATAATCCTAGGC 60.566 50.000 2.96 0.00 37.93 3.93
2994 5992 2.106511 GGCATATTCAGGGCCTGTTAGA 59.893 50.000 31.60 18.83 44.32 2.10
3003 6001 7.823745 AATTAACTTGTAGGCATATTCAGGG 57.176 36.000 0.00 0.00 0.00 4.45
3009 6007 9.914834 TCACCTTTAATTAACTTGTAGGCATAT 57.085 29.630 11.29 0.00 0.00 1.78
3010 6008 9.742144 TTCACCTTTAATTAACTTGTAGGCATA 57.258 29.630 11.29 0.00 0.00 3.14
3011 6009 8.644374 TTCACCTTTAATTAACTTGTAGGCAT 57.356 30.769 11.29 0.00 0.00 4.40
3012 6010 8.466617 TTTCACCTTTAATTAACTTGTAGGCA 57.533 30.769 11.29 0.00 0.00 4.75
3013 6011 9.752961 TTTTTCACCTTTAATTAACTTGTAGGC 57.247 29.630 11.29 0.00 0.00 3.93
3103 6102 5.174395 GCATTGGTTACCATTGTGCATTTA 58.826 37.500 22.25 0.00 37.26 1.40
3109 6108 4.724074 ATCTGCATTGGTTACCATTGTG 57.276 40.909 22.25 16.62 37.26 3.33
3120 6119 3.947196 TGCCTACACTTTATCTGCATTGG 59.053 43.478 0.00 0.00 0.00 3.16
3176 6175 0.179100 CGCCTGTCATGAGGTACCTG 60.179 60.000 22.10 6.17 35.29 4.00
3209 6208 9.801714 CTTTTCTTGCACTGCTTTTAATTTATG 57.198 29.630 1.98 0.00 0.00 1.90
3216 6215 5.504010 CGTCTCTTTTCTTGCACTGCTTTTA 60.504 40.000 1.98 0.00 0.00 1.52
3221 6220 1.867233 TCGTCTCTTTTCTTGCACTGC 59.133 47.619 0.00 0.00 0.00 4.40
3223 6222 3.995199 TGATCGTCTCTTTTCTTGCACT 58.005 40.909 0.00 0.00 0.00 4.40
3227 6226 8.474577 CAATTTTGTTGATCGTCTCTTTTCTTG 58.525 33.333 0.00 0.00 0.00 3.02
3232 6231 6.145535 GCTCAATTTTGTTGATCGTCTCTTT 58.854 36.000 0.00 0.00 0.00 2.52
3240 6239 4.186159 CCCCATGCTCAATTTTGTTGATC 58.814 43.478 0.00 0.00 0.00 2.92
3247 6246 2.299867 GTCACACCCCATGCTCAATTTT 59.700 45.455 0.00 0.00 0.00 1.82
3250 6249 0.323725 GGTCACACCCCATGCTCAAT 60.324 55.000 0.00 0.00 30.04 2.57
3258 6257 2.055689 CTCTTGCAGGTCACACCCCA 62.056 60.000 0.00 0.00 39.75 4.96
3259 6258 1.302832 CTCTTGCAGGTCACACCCC 60.303 63.158 0.00 0.00 39.75 4.95
3260 6259 0.685097 TACTCTTGCAGGTCACACCC 59.315 55.000 0.00 0.00 39.75 4.61
3271 6270 4.093556 GCCACTTCTGTTATGTACTCTTGC 59.906 45.833 0.00 0.00 0.00 4.01
3275 6274 7.549488 ACTTATTGCCACTTCTGTTATGTACTC 59.451 37.037 0.00 0.00 0.00 2.59
3332 6340 5.956068 TGTTGCTGCTATGTGTGAATTTA 57.044 34.783 0.00 0.00 0.00 1.40
3335 6343 4.381185 CCATTGTTGCTGCTATGTGTGAAT 60.381 41.667 0.00 0.00 0.00 2.57
3346 6354 4.513198 TTAGTAAACCCATTGTTGCTGC 57.487 40.909 0.00 0.00 37.23 5.25
3406 6422 9.099454 CTGAATTAACTATACAACTTCAGGACC 57.901 37.037 0.00 0.00 36.24 4.46
3429 6445 8.498358 CGAGTATGCTGCATATAATTTTTCTGA 58.502 33.333 23.74 0.00 0.00 3.27
3430 6446 8.285394 ACGAGTATGCTGCATATAATTTTTCTG 58.715 33.333 23.74 11.09 0.00 3.02
3431 6447 8.383318 ACGAGTATGCTGCATATAATTTTTCT 57.617 30.769 23.74 13.83 0.00 2.52
3437 6453 8.034804 TGATGTAACGAGTATGCTGCATATAAT 58.965 33.333 23.74 13.72 0.00 1.28
3455 6471 5.877031 TGTAGAACTCGCTAGTGATGTAAC 58.123 41.667 6.42 3.19 35.62 2.50
3456 6472 6.459710 CCATGTAGAACTCGCTAGTGATGTAA 60.460 42.308 6.42 0.00 35.62 2.41
3457 6473 5.008712 CCATGTAGAACTCGCTAGTGATGTA 59.991 44.000 6.42 0.00 35.62 2.29
3458 6474 4.202060 CCATGTAGAACTCGCTAGTGATGT 60.202 45.833 6.42 4.65 35.62 3.06
3459 6475 4.036852 TCCATGTAGAACTCGCTAGTGATG 59.963 45.833 6.42 4.02 35.62 3.07
3460 6476 4.207955 TCCATGTAGAACTCGCTAGTGAT 58.792 43.478 6.42 0.00 35.62 3.06
3461 6477 3.617284 TCCATGTAGAACTCGCTAGTGA 58.383 45.455 5.74 5.74 35.62 3.41
3462 6478 3.628032 TCTCCATGTAGAACTCGCTAGTG 59.372 47.826 0.00 0.00 35.62 2.74
3463 6479 3.887352 TCTCCATGTAGAACTCGCTAGT 58.113 45.455 0.00 0.00 37.65 2.57
3464 6480 5.446143 AATCTCCATGTAGAACTCGCTAG 57.554 43.478 0.00 0.00 0.00 3.42
3465 6481 6.715264 TGATAATCTCCATGTAGAACTCGCTA 59.285 38.462 0.00 0.00 0.00 4.26
3466 6482 5.536538 TGATAATCTCCATGTAGAACTCGCT 59.463 40.000 0.00 0.00 0.00 4.93
3467 6483 5.773575 TGATAATCTCCATGTAGAACTCGC 58.226 41.667 0.00 0.00 0.00 5.03
3468 6484 7.081349 GTCTGATAATCTCCATGTAGAACTCG 58.919 42.308 0.00 0.00 0.00 4.18
3469 6485 7.946207 TGTCTGATAATCTCCATGTAGAACTC 58.054 38.462 0.00 0.00 0.00 3.01
3470 6486 7.904558 TGTCTGATAATCTCCATGTAGAACT 57.095 36.000 0.00 0.00 0.00 3.01
3471 6487 8.821894 GTTTGTCTGATAATCTCCATGTAGAAC 58.178 37.037 0.00 0.00 0.00 3.01
3472 6488 8.539544 TGTTTGTCTGATAATCTCCATGTAGAA 58.460 33.333 0.00 0.00 0.00 2.10
3473 6489 7.981789 GTGTTTGTCTGATAATCTCCATGTAGA 59.018 37.037 0.00 0.00 0.00 2.59
3474 6490 7.984050 AGTGTTTGTCTGATAATCTCCATGTAG 59.016 37.037 0.00 0.00 0.00 2.74
3475 6491 7.851228 AGTGTTTGTCTGATAATCTCCATGTA 58.149 34.615 0.00 0.00 0.00 2.29
3476 6492 6.715280 AGTGTTTGTCTGATAATCTCCATGT 58.285 36.000 0.00 0.00 0.00 3.21
3477 6493 6.820152 TGAGTGTTTGTCTGATAATCTCCATG 59.180 38.462 9.80 0.00 0.00 3.66
3478 6494 6.820656 GTGAGTGTTTGTCTGATAATCTCCAT 59.179 38.462 9.80 0.00 0.00 3.41
3479 6495 6.166279 GTGAGTGTTTGTCTGATAATCTCCA 58.834 40.000 9.80 0.00 0.00 3.86
3480 6496 5.582665 GGTGAGTGTTTGTCTGATAATCTCC 59.417 44.000 9.80 3.22 0.00 3.71
3481 6497 6.166279 TGGTGAGTGTTTGTCTGATAATCTC 58.834 40.000 0.00 0.00 0.00 2.75
3482 6498 6.114187 TGGTGAGTGTTTGTCTGATAATCT 57.886 37.500 0.00 0.00 0.00 2.40
3483 6499 5.163814 GCTGGTGAGTGTTTGTCTGATAATC 60.164 44.000 0.00 0.00 0.00 1.75
3484 6500 4.697352 GCTGGTGAGTGTTTGTCTGATAAT 59.303 41.667 0.00 0.00 0.00 1.28
3485 6501 4.065088 GCTGGTGAGTGTTTGTCTGATAA 58.935 43.478 0.00 0.00 0.00 1.75
3486 6502 3.070878 TGCTGGTGAGTGTTTGTCTGATA 59.929 43.478 0.00 0.00 0.00 2.15
3487 6503 2.158769 TGCTGGTGAGTGTTTGTCTGAT 60.159 45.455 0.00 0.00 0.00 2.90
3488 6504 1.209261 TGCTGGTGAGTGTTTGTCTGA 59.791 47.619 0.00 0.00 0.00 3.27
3489 6505 1.667236 TGCTGGTGAGTGTTTGTCTG 58.333 50.000 0.00 0.00 0.00 3.51
3490 6506 2.418368 TTGCTGGTGAGTGTTTGTCT 57.582 45.000 0.00 0.00 0.00 3.41
3491 6507 2.618241 TGATTGCTGGTGAGTGTTTGTC 59.382 45.455 0.00 0.00 0.00 3.18
3492 6508 2.620115 CTGATTGCTGGTGAGTGTTTGT 59.380 45.455 0.00 0.00 0.00 2.83
3493 6509 2.606308 GCTGATTGCTGGTGAGTGTTTG 60.606 50.000 0.00 0.00 38.95 2.93
3494 6510 1.610522 GCTGATTGCTGGTGAGTGTTT 59.389 47.619 0.00 0.00 38.95 2.83
3495 6511 1.242076 GCTGATTGCTGGTGAGTGTT 58.758 50.000 0.00 0.00 38.95 3.32
3496 6512 2.938354 GCTGATTGCTGGTGAGTGT 58.062 52.632 0.00 0.00 38.95 3.55
3506 6522 4.202080 TGCCTTCATATTTGAGCTGATTGC 60.202 41.667 0.00 0.00 43.29 3.56
3507 6523 5.163591 TGTGCCTTCATATTTGAGCTGATTG 60.164 40.000 0.00 0.00 32.27 2.67
3508 6524 4.951715 TGTGCCTTCATATTTGAGCTGATT 59.048 37.500 0.00 0.00 32.27 2.57
3509 6525 4.529897 TGTGCCTTCATATTTGAGCTGAT 58.470 39.130 0.00 0.00 32.27 2.90
3510 6526 3.954200 TGTGCCTTCATATTTGAGCTGA 58.046 40.909 0.00 0.00 32.27 4.26
3511 6527 4.707030 TTGTGCCTTCATATTTGAGCTG 57.293 40.909 0.00 0.00 32.27 4.24
3512 6528 6.040166 CCTTATTGTGCCTTCATATTTGAGCT 59.960 38.462 0.00 0.00 32.27 4.09
3513 6529 6.211515 CCTTATTGTGCCTTCATATTTGAGC 58.788 40.000 0.00 0.00 32.27 4.26
3514 6530 6.183360 TGCCTTATTGTGCCTTCATATTTGAG 60.183 38.462 0.00 0.00 32.27 3.02
3515 6531 5.655974 TGCCTTATTGTGCCTTCATATTTGA 59.344 36.000 0.00 0.00 0.00 2.69
3516 6532 5.904941 TGCCTTATTGTGCCTTCATATTTG 58.095 37.500 0.00 0.00 0.00 2.32
3517 6533 5.893255 TCTGCCTTATTGTGCCTTCATATTT 59.107 36.000 0.00 0.00 0.00 1.40
3518 6534 5.448654 TCTGCCTTATTGTGCCTTCATATT 58.551 37.500 0.00 0.00 0.00 1.28
3519 6535 5.052693 TCTGCCTTATTGTGCCTTCATAT 57.947 39.130 0.00 0.00 0.00 1.78
3520 6536 4.502105 TCTGCCTTATTGTGCCTTCATA 57.498 40.909 0.00 0.00 0.00 2.15
3521 6537 3.370840 TCTGCCTTATTGTGCCTTCAT 57.629 42.857 0.00 0.00 0.00 2.57
3522 6538 2.877097 TCTGCCTTATTGTGCCTTCA 57.123 45.000 0.00 0.00 0.00 3.02
3523 6539 2.424956 CCTTCTGCCTTATTGTGCCTTC 59.575 50.000 0.00 0.00 0.00 3.46
3524 6540 2.041620 TCCTTCTGCCTTATTGTGCCTT 59.958 45.455 0.00 0.00 0.00 4.35
3525 6541 1.635487 TCCTTCTGCCTTATTGTGCCT 59.365 47.619 0.00 0.00 0.00 4.75
3526 6542 2.128771 TCCTTCTGCCTTATTGTGCC 57.871 50.000 0.00 0.00 0.00 5.01
3527 6543 2.164422 GGTTCCTTCTGCCTTATTGTGC 59.836 50.000 0.00 0.00 0.00 4.57
3528 6544 2.755103 GGGTTCCTTCTGCCTTATTGTG 59.245 50.000 0.00 0.00 0.00 3.33
3529 6545 2.378547 TGGGTTCCTTCTGCCTTATTGT 59.621 45.455 0.00 0.00 0.00 2.71
3530 6546 3.085952 TGGGTTCCTTCTGCCTTATTG 57.914 47.619 0.00 0.00 0.00 1.90
3531 6547 3.825908 TTGGGTTCCTTCTGCCTTATT 57.174 42.857 0.00 0.00 0.00 1.40
3532 6548 3.825908 TTTGGGTTCCTTCTGCCTTAT 57.174 42.857 0.00 0.00 0.00 1.73
3533 6549 3.496331 CTTTTGGGTTCCTTCTGCCTTA 58.504 45.455 0.00 0.00 0.00 2.69
3534 6550 2.319844 CTTTTGGGTTCCTTCTGCCTT 58.680 47.619 0.00 0.00 0.00 4.35
3535 6551 2.001076 CTTTTGGGTTCCTTCTGCCT 57.999 50.000 0.00 0.00 0.00 4.75
3536 6552 0.318441 GCTTTTGGGTTCCTTCTGCC 59.682 55.000 0.00 0.00 0.00 4.85
3537 6553 1.332195 AGCTTTTGGGTTCCTTCTGC 58.668 50.000 0.00 0.00 0.00 4.26
3538 6554 4.141959 TGAAAAGCTTTTGGGTTCCTTCTG 60.142 41.667 28.42 0.00 34.22 3.02
3539 6555 4.030216 TGAAAAGCTTTTGGGTTCCTTCT 58.970 39.130 28.42 0.00 34.22 2.85
3540 6556 4.141937 ACTGAAAAGCTTTTGGGTTCCTTC 60.142 41.667 28.42 11.49 34.22 3.46
3541 6557 3.774766 ACTGAAAAGCTTTTGGGTTCCTT 59.225 39.130 28.42 1.13 34.22 3.36
3542 6558 3.374764 ACTGAAAAGCTTTTGGGTTCCT 58.625 40.909 28.42 1.94 34.22 3.36
3543 6559 3.717707 GACTGAAAAGCTTTTGGGTTCC 58.282 45.455 28.42 13.32 34.22 3.62
3544 6560 3.372060 CGACTGAAAAGCTTTTGGGTTC 58.628 45.455 28.42 14.33 34.22 3.62
3545 6561 2.481276 GCGACTGAAAAGCTTTTGGGTT 60.481 45.455 28.42 10.03 37.22 4.11
3546 6562 1.067060 GCGACTGAAAAGCTTTTGGGT 59.933 47.619 28.42 23.30 0.00 4.51
3547 6563 1.602920 GGCGACTGAAAAGCTTTTGGG 60.603 52.381 28.42 20.59 0.00 4.12
3548 6564 1.338020 AGGCGACTGAAAAGCTTTTGG 59.662 47.619 28.42 20.91 41.13 3.28
3549 6565 2.781945 AGGCGACTGAAAAGCTTTTG 57.218 45.000 28.42 17.11 41.13 2.44
3550 6566 2.552743 GGTAGGCGACTGAAAAGCTTTT 59.447 45.455 24.08 24.08 43.88 2.27
3551 6567 2.152016 GGTAGGCGACTGAAAAGCTTT 58.848 47.619 5.69 5.69 43.88 3.51
3552 6568 1.071699 TGGTAGGCGACTGAAAAGCTT 59.928 47.619 0.00 0.00 43.88 3.74
3553 6569 0.685097 TGGTAGGCGACTGAAAAGCT 59.315 50.000 0.00 0.00 43.88 3.74
3554 6570 1.398390 CATGGTAGGCGACTGAAAAGC 59.602 52.381 0.00 0.00 43.88 3.51
3555 6571 2.673368 GTCATGGTAGGCGACTGAAAAG 59.327 50.000 0.00 0.00 43.88 2.27
3556 6572 2.614481 GGTCATGGTAGGCGACTGAAAA 60.614 50.000 0.00 0.00 43.88 2.29
3557 6573 1.066430 GGTCATGGTAGGCGACTGAAA 60.066 52.381 0.00 0.00 43.88 2.69
3558 6574 0.535335 GGTCATGGTAGGCGACTGAA 59.465 55.000 0.00 0.00 43.88 3.02
3559 6575 1.327690 GGGTCATGGTAGGCGACTGA 61.328 60.000 0.00 0.00 43.88 3.41
3560 6576 1.144057 GGGTCATGGTAGGCGACTG 59.856 63.158 0.00 0.00 43.88 3.51
3562 6578 1.153429 GTGGGTCATGGTAGGCGAC 60.153 63.158 0.00 0.00 0.00 5.19
3563 6579 1.305802 AGTGGGTCATGGTAGGCGA 60.306 57.895 0.00 0.00 0.00 5.54
3564 6580 1.153369 CAGTGGGTCATGGTAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
3565 6581 0.179000 CTCAGTGGGTCATGGTAGGC 59.821 60.000 0.00 0.00 0.00 3.93
3566 6582 0.833287 CCTCAGTGGGTCATGGTAGG 59.167 60.000 0.00 0.00 0.00 3.18
3567 6583 0.179000 GCCTCAGTGGGTCATGGTAG 59.821 60.000 0.00 0.00 36.00 3.18
3568 6584 1.271840 GGCCTCAGTGGGTCATGGTA 61.272 60.000 0.00 0.00 36.00 3.25
3569 6585 2.606587 GGCCTCAGTGGGTCATGGT 61.607 63.158 0.00 0.00 36.00 3.55
3570 6586 2.273449 GGCCTCAGTGGGTCATGG 59.727 66.667 0.00 0.00 36.00 3.66
3571 6587 2.273449 GGGCCTCAGTGGGTCATG 59.727 66.667 0.84 0.00 36.00 3.07
3572 6588 2.204136 TGGGCCTCAGTGGGTCAT 60.204 61.111 4.53 0.00 36.00 3.06
3573 6589 3.249189 GTGGGCCTCAGTGGGTCA 61.249 66.667 4.53 0.00 36.00 4.02
3574 6590 2.930562 AGTGGGCCTCAGTGGGTC 60.931 66.667 4.53 0.00 36.00 4.46
3575 6591 3.252284 CAGTGGGCCTCAGTGGGT 61.252 66.667 17.01 0.00 41.82 4.51
3576 6592 2.930019 TCAGTGGGCCTCAGTGGG 60.930 66.667 21.77 5.15 44.76 4.61
3577 6593 2.667418 CTCAGTGGGCCTCAGTGG 59.333 66.667 21.77 12.82 44.76 4.00
3578 6594 1.915266 TCCTCAGTGGGCCTCAGTG 60.915 63.158 18.14 18.14 45.74 3.66
3579 6595 1.915769 GTCCTCAGTGGGCCTCAGT 60.916 63.158 4.53 0.00 33.37 3.41
3580 6596 1.483595 TTGTCCTCAGTGGGCCTCAG 61.484 60.000 4.53 0.00 40.46 3.35
3581 6597 1.059584 TTTGTCCTCAGTGGGCCTCA 61.060 55.000 4.53 0.00 40.46 3.86
3582 6598 0.110486 TTTTGTCCTCAGTGGGCCTC 59.890 55.000 4.53 0.00 40.46 4.70
3583 6599 0.111253 CTTTTGTCCTCAGTGGGCCT 59.889 55.000 4.53 0.00 40.46 5.19
3584 6600 1.527433 GCTTTTGTCCTCAGTGGGCC 61.527 60.000 0.00 0.00 40.46 5.80
3585 6601 0.823356 TGCTTTTGTCCTCAGTGGGC 60.823 55.000 0.00 0.00 41.87 5.36
3586 6602 1.815003 GATGCTTTTGTCCTCAGTGGG 59.185 52.381 0.00 0.00 36.20 4.61
3587 6603 1.815003 GGATGCTTTTGTCCTCAGTGG 59.185 52.381 0.00 0.00 37.10 4.00
3588 6604 2.507484 TGGATGCTTTTGTCCTCAGTG 58.493 47.619 0.00 0.00 35.49 3.66
3589 6605 2.957402 TGGATGCTTTTGTCCTCAGT 57.043 45.000 0.00 0.00 35.49 3.41
3590 6606 3.087031 ACATGGATGCTTTTGTCCTCAG 58.913 45.455 0.00 0.00 35.49 3.35
3591 6607 2.821378 CACATGGATGCTTTTGTCCTCA 59.179 45.455 0.00 0.00 35.49 3.86
3592 6608 2.416431 GCACATGGATGCTTTTGTCCTC 60.416 50.000 0.00 0.00 42.62 3.71
3593 6609 1.547372 GCACATGGATGCTTTTGTCCT 59.453 47.619 0.00 0.00 42.62 3.85
3594 6610 1.273048 TGCACATGGATGCTTTTGTCC 59.727 47.619 9.44 0.00 46.28 4.02
3595 6611 2.029649 ACTGCACATGGATGCTTTTGTC 60.030 45.455 9.44 0.00 46.28 3.18
3596 6612 1.965643 ACTGCACATGGATGCTTTTGT 59.034 42.857 9.44 1.87 46.28 2.83
3597 6613 2.734606 CAACTGCACATGGATGCTTTTG 59.265 45.455 9.44 8.35 46.28 2.44
3598 6614 2.868839 GCAACTGCACATGGATGCTTTT 60.869 45.455 9.44 0.79 46.28 2.27
3599 6615 1.337447 GCAACTGCACATGGATGCTTT 60.337 47.619 9.44 1.10 46.28 3.51
3600 6616 0.245539 GCAACTGCACATGGATGCTT 59.754 50.000 9.44 0.00 46.28 3.91
3601 6617 0.611062 AGCAACTGCACATGGATGCT 60.611 50.000 9.44 3.06 46.28 3.79
3602 6618 0.179145 GAGCAACTGCACATGGATGC 60.179 55.000 4.22 0.00 46.32 3.91
3603 6619 0.098200 CGAGCAACTGCACATGGATG 59.902 55.000 4.22 0.00 45.16 3.51
3604 6620 0.036105 TCGAGCAACTGCACATGGAT 60.036 50.000 4.22 0.00 45.16 3.41
3605 6621 0.036105 ATCGAGCAACTGCACATGGA 60.036 50.000 4.22 0.00 45.16 3.41
3606 6622 0.806868 AATCGAGCAACTGCACATGG 59.193 50.000 4.22 0.00 45.16 3.66
3607 6623 2.931969 TCTAATCGAGCAACTGCACATG 59.068 45.455 4.22 0.00 45.16 3.21
3608 6624 3.193263 CTCTAATCGAGCAACTGCACAT 58.807 45.455 4.22 0.00 45.16 3.21
3609 6625 2.029020 ACTCTAATCGAGCAACTGCACA 60.029 45.455 4.22 0.00 43.85 4.57
3610 6626 2.611518 ACTCTAATCGAGCAACTGCAC 58.388 47.619 4.22 0.00 43.85 4.57
3611 6627 4.450082 TTACTCTAATCGAGCAACTGCA 57.550 40.909 4.22 0.00 43.85 4.41
3612 6628 4.033014 GGTTTACTCTAATCGAGCAACTGC 59.967 45.833 0.00 0.00 43.85 4.40
3613 6629 5.168569 TGGTTTACTCTAATCGAGCAACTG 58.831 41.667 0.00 0.00 43.85 3.16
3614 6630 5.401531 TGGTTTACTCTAATCGAGCAACT 57.598 39.130 0.00 0.00 43.85 3.16
3615 6631 6.367969 TCTTTGGTTTACTCTAATCGAGCAAC 59.632 38.462 0.00 0.00 43.85 4.17
3616 6632 6.460781 TCTTTGGTTTACTCTAATCGAGCAA 58.539 36.000 0.00 0.00 43.85 3.91
3617 6633 6.032956 TCTTTGGTTTACTCTAATCGAGCA 57.967 37.500 0.00 0.00 43.85 4.26
3618 6634 5.520649 CCTCTTTGGTTTACTCTAATCGAGC 59.479 44.000 0.00 0.00 43.85 5.03
3619 6635 5.520649 GCCTCTTTGGTTTACTCTAATCGAG 59.479 44.000 0.00 0.00 40.97 4.04
3620 6636 5.416947 GCCTCTTTGGTTTACTCTAATCGA 58.583 41.667 0.00 0.00 38.35 3.59
3621 6637 4.571176 GGCCTCTTTGGTTTACTCTAATCG 59.429 45.833 0.00 0.00 38.35 3.34
3622 6638 5.746284 AGGCCTCTTTGGTTTACTCTAATC 58.254 41.667 0.00 0.00 38.35 1.75
3623 6639 5.780958 AGGCCTCTTTGGTTTACTCTAAT 57.219 39.130 0.00 0.00 38.35 1.73
3624 6640 5.309806 AGAAGGCCTCTTTGGTTTACTCTAA 59.690 40.000 5.23 0.00 38.35 2.10
3625 6641 4.844655 AGAAGGCCTCTTTGGTTTACTCTA 59.155 41.667 5.23 0.00 38.35 2.43
3626 6642 3.653352 AGAAGGCCTCTTTGGTTTACTCT 59.347 43.478 5.23 0.00 38.35 3.24
3627 6643 3.753797 CAGAAGGCCTCTTTGGTTTACTC 59.246 47.826 5.23 0.00 38.35 2.59
3628 6644 3.394606 TCAGAAGGCCTCTTTGGTTTACT 59.605 43.478 5.23 0.00 38.35 2.24
3629 6645 3.751518 TCAGAAGGCCTCTTTGGTTTAC 58.248 45.455 5.23 0.00 38.35 2.01
3630 6646 3.810743 GCTCAGAAGGCCTCTTTGGTTTA 60.811 47.826 5.23 0.00 38.35 2.01
3631 6647 2.868899 CTCAGAAGGCCTCTTTGGTTT 58.131 47.619 5.23 0.00 38.35 3.27
3632 6648 1.546548 GCTCAGAAGGCCTCTTTGGTT 60.547 52.381 5.23 0.00 38.35 3.67
3633 6649 0.037447 GCTCAGAAGGCCTCTTTGGT 59.963 55.000 5.23 0.00 38.35 3.67
3634 6650 0.037303 TGCTCAGAAGGCCTCTTTGG 59.963 55.000 5.23 0.00 39.35 3.28
3635 6651 1.163554 GTGCTCAGAAGGCCTCTTTG 58.836 55.000 5.23 5.12 32.52 2.77
3636 6652 1.063183 AGTGCTCAGAAGGCCTCTTT 58.937 50.000 5.23 0.00 32.52 2.52
3637 6653 1.063183 AAGTGCTCAGAAGGCCTCTT 58.937 50.000 5.23 0.00 35.62 2.85
3638 6654 0.324285 CAAGTGCTCAGAAGGCCTCT 59.676 55.000 5.23 1.59 33.23 3.69
3639 6655 1.304509 GCAAGTGCTCAGAAGGCCTC 61.305 60.000 5.23 0.00 38.21 4.70
3640 6656 1.303155 GCAAGTGCTCAGAAGGCCT 60.303 57.895 0.00 0.00 38.21 5.19
3641 6657 3.272031 GCAAGTGCTCAGAAGGCC 58.728 61.111 0.00 0.00 38.21 5.19
3651 6667 2.064014 GAGCAATCCAAAAGCAAGTGC 58.936 47.619 0.00 0.00 42.49 4.40
3652 6668 2.036217 TGGAGCAATCCAAAAGCAAGTG 59.964 45.455 0.00 0.00 36.74 3.16
3653 6669 2.036346 GTGGAGCAATCCAAAAGCAAGT 59.964 45.455 0.00 0.00 42.10 3.16
3654 6670 2.036217 TGTGGAGCAATCCAAAAGCAAG 59.964 45.455 0.00 0.00 42.10 4.01
3655 6671 2.037901 TGTGGAGCAATCCAAAAGCAA 58.962 42.857 0.00 0.00 42.10 3.91
3656 6672 1.702182 TGTGGAGCAATCCAAAAGCA 58.298 45.000 0.00 0.00 42.10 3.91
3657 6673 4.660789 ATATGTGGAGCAATCCAAAAGC 57.339 40.909 0.00 0.00 42.10 3.51
3658 6674 7.514784 TGATATATGTGGAGCAATCCAAAAG 57.485 36.000 0.00 0.00 42.10 2.27
3659 6675 7.894753 TTGATATATGTGGAGCAATCCAAAA 57.105 32.000 0.00 0.00 42.10 2.44
3660 6676 7.524202 GCATTGATATATGTGGAGCAATCCAAA 60.524 37.037 0.00 0.00 42.10 3.28
3661 6677 6.071784 GCATTGATATATGTGGAGCAATCCAA 60.072 38.462 0.00 0.00 42.10 3.53
3662 6678 5.416639 GCATTGATATATGTGGAGCAATCCA 59.583 40.000 0.00 0.00 37.46 3.41
3663 6679 5.163581 GGCATTGATATATGTGGAGCAATCC 60.164 44.000 0.00 0.00 0.00 3.01
3664 6680 5.416639 TGGCATTGATATATGTGGAGCAATC 59.583 40.000 0.00 0.00 0.00 2.67
3665 6681 5.326900 TGGCATTGATATATGTGGAGCAAT 58.673 37.500 0.00 0.00 0.00 3.56
3666 6682 4.727677 TGGCATTGATATATGTGGAGCAA 58.272 39.130 0.00 0.00 0.00 3.91
3667 6683 4.370094 TGGCATTGATATATGTGGAGCA 57.630 40.909 0.00 0.00 0.00 4.26
3668 6684 5.882000 TGTATGGCATTGATATATGTGGAGC 59.118 40.000 4.78 0.00 0.00 4.70
3669 6685 9.617523 TTATGTATGGCATTGATATATGTGGAG 57.382 33.333 4.78 0.00 38.94 3.86
3670 6686 9.972106 TTTATGTATGGCATTGATATATGTGGA 57.028 29.630 4.78 0.00 38.94 4.02
3679 6695 9.801873 GTTTGTACTTTTATGTATGGCATTGAT 57.198 29.630 4.78 0.40 38.94 2.57
3680 6696 8.797438 TGTTTGTACTTTTATGTATGGCATTGA 58.203 29.630 4.78 0.00 38.94 2.57
3681 6697 8.978564 TGTTTGTACTTTTATGTATGGCATTG 57.021 30.769 4.78 0.00 38.94 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.