Multiple sequence alignment - TraesCS7A01G064200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G064200 chr7A 100.000 5838 0 0 1 5838 32031144 32025307 0.000000e+00 10781.0
1 TraesCS7A01G064200 chr7A 93.433 533 21 6 3833 4361 32303224 32302702 0.000000e+00 778.0
2 TraesCS7A01G064200 chr7A 77.754 944 147 33 4003 4930 32035778 32034882 6.700000e-144 521.0
3 TraesCS7A01G064200 chr7A 84.899 298 38 6 1939 2232 32037196 32036902 1.590000e-75 294.0
4 TraesCS7A01G064200 chr7A 90.265 226 20 2 4005 4230 32294094 32293871 1.590000e-75 294.0
5 TraesCS7A01G064200 chr7A 87.200 250 31 1 1939 2188 32295512 32295264 3.440000e-72 283.0
6 TraesCS7A01G064200 chr7A 98.750 80 1 0 1350 1429 32029741 32029662 6.100000e-30 143.0
7 TraesCS7A01G064200 chr7A 98.750 80 1 0 1404 1483 32029795 32029716 6.100000e-30 143.0
8 TraesCS7A01G064200 chr4A 93.354 2242 131 14 3604 5838 696003590 696005820 0.000000e+00 3299.0
9 TraesCS7A01G064200 chr4A 96.050 1367 48 5 1720 3084 696001616 696002978 0.000000e+00 2220.0
10 TraesCS7A01G064200 chr4A 97.137 524 15 0 3085 3608 696003042 696003565 0.000000e+00 885.0
11 TraesCS7A01G064200 chr4A 91.133 609 42 6 827 1429 696000808 696001410 0.000000e+00 815.0
12 TraesCS7A01G064200 chr4A 94.755 286 13 1 1404 1689 696001331 696001614 1.490000e-120 444.0
13 TraesCS7A01G064200 chr4A 89.224 232 20 3 175 402 695999997 696000227 9.570000e-73 285.0
14 TraesCS7A01G064200 chr7D 98.154 1354 22 1 3085 4438 31951141 31949791 0.000000e+00 2359.0
15 TraesCS7A01G064200 chr7D 91.679 1406 87 11 4435 5838 31949678 31948301 0.000000e+00 1921.0
16 TraesCS7A01G064200 chr7D 95.177 933 38 4 1407 2339 31952945 31952020 0.000000e+00 1467.0
17 TraesCS7A01G064200 chr7D 97.271 733 18 2 2353 3084 31951936 31951205 0.000000e+00 1242.0
18 TraesCS7A01G064200 chr7D 91.626 609 39 7 827 1429 31953471 31952869 0.000000e+00 832.0
19 TraesCS7A01G064200 chr7D 77.993 877 129 32 4005 4861 31959357 31958525 5.260000e-135 492.0
20 TraesCS7A01G064200 chr7D 82.952 393 50 11 432 811 31953909 31953521 7.250000e-89 339.0
21 TraesCS7A01G064200 chr7D 84.281 299 39 7 1939 2232 31960774 31960479 9.570000e-73 285.0
22 TraesCS7A01G064200 chr7D 88.235 238 23 3 175 408 31954357 31954121 4.450000e-71 279.0
23 TraesCS7A01G064200 chr7D 93.750 64 4 0 4059 4122 32003086 32003023 4.820000e-16 97.1
24 TraesCS7A01G064200 chrUn 77.537 877 137 32 4004 4861 298010447 298009612 1.900000e-129 473.0
25 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 176720599 176720959 5.560000e-95 359.0
26 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 176754928 176755288 5.560000e-95 359.0
27 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 238522529 238522169 5.560000e-95 359.0
28 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 238536638 238536278 5.560000e-95 359.0
29 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 271021410 271021050 5.560000e-95 359.0
30 TraesCS7A01G064200 chrUn 84.765 361 52 2 3176 3533 278813470 278813830 5.560000e-95 359.0
31 TraesCS7A01G064200 chrUn 87.607 234 26 1 5379 5609 235799321 235799088 9.640000e-68 268.0
32 TraesCS7A01G064200 chrUn 83.219 292 45 4 1944 2234 298011876 298011588 1.250000e-66 265.0
33 TraesCS7A01G064200 chrUn 84.314 255 37 3 1939 2192 238523476 238523224 4.520000e-61 246.0
34 TraesCS7A01G064200 chrUn 84.314 255 37 3 1939 2192 238537585 238537333 4.520000e-61 246.0
35 TraesCS7A01G064200 chrUn 84.314 255 37 3 1939 2192 271022357 271022105 4.520000e-61 246.0
36 TraesCS7A01G064200 chr3B 85.319 361 50 2 3176 3533 713873021 713872661 2.570000e-98 370.0
37 TraesCS7A01G064200 chr6A 87.234 235 26 3 5379 5609 48550179 48549945 1.250000e-66 265.0
38 TraesCS7A01G064200 chr2A 88.830 188 21 0 5379 5566 441110519 441110332 1.270000e-56 231.0
39 TraesCS7A01G064200 chr5B 88.830 188 20 1 5379 5566 89745825 89745639 4.550000e-56 230.0
40 TraesCS7A01G064200 chr5D 88.298 188 22 0 5379 5566 462908460 462908273 5.890000e-55 226.0
41 TraesCS7A01G064200 chr3D 87.692 195 21 1 5379 5570 143482755 143482949 2.120000e-54 224.0
42 TraesCS7A01G064200 chr3D 79.426 209 28 9 559 766 2415397 2415203 3.670000e-27 134.0
43 TraesCS7A01G064200 chr1D 86.735 196 23 3 5379 5571 235546979 235547174 1.270000e-51 215.0
44 TraesCS7A01G064200 chr3A 86.316 95 9 3 661 754 1699392 1699483 3.720000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G064200 chr7A 32025307 32031144 5837 True 3689.000000 10781 99.166667 1 5838 3 chr7A.!!$R2 5837
1 TraesCS7A01G064200 chr7A 32302702 32303224 522 True 778.000000 778 93.433000 3833 4361 1 chr7A.!!$R1 528
2 TraesCS7A01G064200 chr7A 32034882 32037196 2314 True 407.500000 521 81.326500 1939 4930 2 chr7A.!!$R3 2991
3 TraesCS7A01G064200 chr7A 32293871 32295512 1641 True 288.500000 294 88.732500 1939 4230 2 chr7A.!!$R4 2291
4 TraesCS7A01G064200 chr4A 695999997 696005820 5823 False 1324.666667 3299 93.608833 175 5838 6 chr4A.!!$F1 5663
5 TraesCS7A01G064200 chr7D 31948301 31954357 6056 True 1205.571429 2359 92.156286 175 5838 7 chr7D.!!$R2 5663
6 TraesCS7A01G064200 chr7D 31958525 31960774 2249 True 388.500000 492 81.137000 1939 4861 2 chr7D.!!$R3 2922
7 TraesCS7A01G064200 chrUn 298009612 298011876 2264 True 369.000000 473 80.378000 1944 4861 2 chrUn.!!$R5 2917
8 TraesCS7A01G064200 chrUn 238522169 238523476 1307 True 302.500000 359 84.539500 1939 3533 2 chrUn.!!$R2 1594
9 TraesCS7A01G064200 chrUn 238536278 238537585 1307 True 302.500000 359 84.539500 1939 3533 2 chrUn.!!$R3 1594
10 TraesCS7A01G064200 chrUn 271021050 271022357 1307 True 302.500000 359 84.539500 1939 3533 2 chrUn.!!$R4 1594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.036105 ATCCATGTGCAGTTGCTCGA 60.036 50.000 5.62 0.0 42.66 4.04 F
150 151 0.037303 CCAAAGAGGCCTTCTGAGCA 59.963 55.000 6.77 0.0 35.91 4.26 F
420 430 0.038599 ATCCAACCATGCTGTGCAGA 59.961 50.000 3.02 0.0 43.65 4.26 F
421 431 0.178995 TCCAACCATGCTGTGCAGAA 60.179 50.000 3.02 0.0 43.65 3.02 F
1006 1253 0.453390 GCAGGCAGCTGTAATGGTTC 59.547 55.000 16.64 0.0 41.15 3.62 F
1433 1683 0.172352 CGTCTCTGTTCCTCCTCTGC 59.828 60.000 0.00 0.0 0.00 4.26 F
1435 1685 0.411452 TCTCTGTTCCTCCTCTGCCT 59.589 55.000 0.00 0.0 0.00 4.75 F
1436 1686 1.203237 TCTCTGTTCCTCCTCTGCCTT 60.203 52.381 0.00 0.0 0.00 4.35 F
1438 1688 1.625818 TCTGTTCCTCCTCTGCCTTTC 59.374 52.381 0.00 0.0 0.00 2.62 F
1439 1689 1.627834 CTGTTCCTCCTCTGCCTTTCT 59.372 52.381 0.00 0.0 0.00 2.52 F
2131 2408 1.817447 GCAAAGCTGGCAGAGAAGATT 59.183 47.619 20.86 0.0 0.00 2.40 F
2153 2430 2.101415 TCATACGCAGCAGCTAACAGAT 59.899 45.455 0.00 0.0 39.10 2.90 F
2816 3216 2.754552 GCATGATCAAGTAAGGGCAACA 59.245 45.455 0.00 0.0 39.74 3.33 F
3799 4294 3.961408 AGGGTGTAGGATTGTAGCTGTAG 59.039 47.826 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1664 0.172352 GCAGAGGAGGAACAGAGACG 59.828 60.000 0.00 0.00 0.00 4.18 R
1416 1666 0.411452 AGGCAGAGGAGGAACAGAGA 59.589 55.000 0.00 0.00 0.00 3.10 R
1417 1667 1.274712 AAGGCAGAGGAGGAACAGAG 58.725 55.000 0.00 0.00 0.00 3.35 R
1418 1668 1.625818 GAAAGGCAGAGGAGGAACAGA 59.374 52.381 0.00 0.00 0.00 3.41 R
1808 2085 2.092914 AGCAACCCAACTAGCCTGTATC 60.093 50.000 0.00 0.00 0.00 2.24 R
2699 3099 2.611292 GAGTTTGGCTTCTGATCCGATG 59.389 50.000 0.00 0.00 0.00 3.84 R
3125 3588 3.070018 TGCAGCTTTCTCTACAGCTTTC 58.930 45.455 0.00 0.00 44.28 2.62 R
3137 3600 3.567164 ACAGCATGGTATATGCAGCTTTC 59.433 43.478 13.60 0.00 46.77 2.62 R
3168 3631 4.743644 GCATGCATCATAAAAGAGAAAGCC 59.256 41.667 14.21 0.00 0.00 4.35 R
3171 3634 6.762702 TCTGCATGCATCATAAAAGAGAAA 57.237 33.333 22.97 0.00 0.00 2.52 R
3775 4270 3.587506 ACAGCTACAATCCTACACCCTTT 59.412 43.478 0.00 0.00 0.00 3.11 R
3994 4496 3.684305 GCCATCCTGTAAAATTGCCAAAC 59.316 43.478 0.00 0.00 0.00 2.93 R
4466 5102 4.453819 GCAGTACTTTCTGAAAGCACATCT 59.546 41.667 26.81 16.51 42.27 2.90 R
5421 6067 0.550914 TGTTGAGGCTCCACCAAAGT 59.449 50.000 15.36 0.00 43.14 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.296690 GCAATCAGCTCAAATATGAAGGC 58.703 43.478 0.00 0.00 41.15 4.35
26 27 4.202080 GCAATCAGCTCAAATATGAAGGCA 60.202 41.667 0.00 0.00 41.15 4.75
27 28 5.279384 CAATCAGCTCAAATATGAAGGCAC 58.721 41.667 0.00 0.00 34.49 5.01
28 29 3.954200 TCAGCTCAAATATGAAGGCACA 58.046 40.909 0.00 0.00 34.49 4.57
29 30 4.334552 TCAGCTCAAATATGAAGGCACAA 58.665 39.130 0.00 0.00 34.49 3.33
30 31 4.951715 TCAGCTCAAATATGAAGGCACAAT 59.048 37.500 0.00 0.00 34.49 2.71
31 32 6.121590 TCAGCTCAAATATGAAGGCACAATA 58.878 36.000 0.00 0.00 34.49 1.90
32 33 6.602803 TCAGCTCAAATATGAAGGCACAATAA 59.397 34.615 0.00 0.00 34.49 1.40
33 34 6.916387 CAGCTCAAATATGAAGGCACAATAAG 59.084 38.462 0.00 0.00 34.49 1.73
34 35 6.040166 AGCTCAAATATGAAGGCACAATAAGG 59.960 38.462 0.00 0.00 34.49 2.69
35 36 6.147864 TCAAATATGAAGGCACAATAAGGC 57.852 37.500 0.00 0.00 30.99 4.35
36 37 5.655974 TCAAATATGAAGGCACAATAAGGCA 59.344 36.000 0.00 0.00 30.99 4.75
37 38 5.779529 AATATGAAGGCACAATAAGGCAG 57.220 39.130 0.00 0.00 0.00 4.85
38 39 2.877097 TGAAGGCACAATAAGGCAGA 57.123 45.000 0.00 0.00 0.00 4.26
39 40 3.153369 TGAAGGCACAATAAGGCAGAA 57.847 42.857 0.00 0.00 0.00 3.02
40 41 3.084039 TGAAGGCACAATAAGGCAGAAG 58.916 45.455 0.00 0.00 0.00 2.85
41 42 2.134789 AGGCACAATAAGGCAGAAGG 57.865 50.000 0.00 0.00 0.00 3.46
42 43 1.635487 AGGCACAATAAGGCAGAAGGA 59.365 47.619 0.00 0.00 0.00 3.36
43 44 2.041620 AGGCACAATAAGGCAGAAGGAA 59.958 45.455 0.00 0.00 0.00 3.36
44 45 2.164422 GGCACAATAAGGCAGAAGGAAC 59.836 50.000 0.00 0.00 0.00 3.62
45 46 2.164422 GCACAATAAGGCAGAAGGAACC 59.836 50.000 0.00 0.00 0.00 3.62
46 47 2.755103 CACAATAAGGCAGAAGGAACCC 59.245 50.000 0.00 0.00 0.00 4.11
47 48 2.378547 ACAATAAGGCAGAAGGAACCCA 59.621 45.455 0.00 0.00 0.00 4.51
48 49 3.181423 ACAATAAGGCAGAAGGAACCCAA 60.181 43.478 0.00 0.00 0.00 4.12
49 50 3.825908 ATAAGGCAGAAGGAACCCAAA 57.174 42.857 0.00 0.00 0.00 3.28
50 51 2.470057 AAGGCAGAAGGAACCCAAAA 57.530 45.000 0.00 0.00 0.00 2.44
51 52 2.001076 AGGCAGAAGGAACCCAAAAG 57.999 50.000 0.00 0.00 0.00 2.27
52 53 0.318441 GGCAGAAGGAACCCAAAAGC 59.682 55.000 0.00 0.00 0.00 3.51
53 54 1.332195 GCAGAAGGAACCCAAAAGCT 58.668 50.000 0.00 0.00 0.00 3.74
54 55 1.688735 GCAGAAGGAACCCAAAAGCTT 59.311 47.619 0.00 0.00 0.00 3.74
55 56 2.103094 GCAGAAGGAACCCAAAAGCTTT 59.897 45.455 5.69 5.69 0.00 3.51
56 57 3.432186 GCAGAAGGAACCCAAAAGCTTTT 60.432 43.478 18.74 18.74 0.00 2.27
57 58 4.371786 CAGAAGGAACCCAAAAGCTTTTC 58.628 43.478 21.45 10.16 0.00 2.29
58 59 4.030216 AGAAGGAACCCAAAAGCTTTTCA 58.970 39.130 21.45 0.00 0.00 2.69
59 60 4.100035 AGAAGGAACCCAAAAGCTTTTCAG 59.900 41.667 21.45 16.96 0.00 3.02
60 61 3.374764 AGGAACCCAAAAGCTTTTCAGT 58.625 40.909 21.45 17.57 0.00 3.41
61 62 3.384789 AGGAACCCAAAAGCTTTTCAGTC 59.615 43.478 21.45 14.98 0.00 3.51
62 63 3.372060 GAACCCAAAAGCTTTTCAGTCG 58.628 45.455 21.45 10.02 0.00 4.18
63 64 1.067060 ACCCAAAAGCTTTTCAGTCGC 59.933 47.619 21.45 0.00 0.00 5.19
64 65 1.602920 CCCAAAAGCTTTTCAGTCGCC 60.603 52.381 21.45 0.00 0.00 5.54
65 66 1.338020 CCAAAAGCTTTTCAGTCGCCT 59.662 47.619 21.45 0.00 0.00 5.52
66 67 2.552315 CCAAAAGCTTTTCAGTCGCCTA 59.448 45.455 21.45 0.00 0.00 3.93
67 68 3.555518 CAAAAGCTTTTCAGTCGCCTAC 58.444 45.455 21.45 0.00 0.00 3.18
68 69 1.809684 AAGCTTTTCAGTCGCCTACC 58.190 50.000 0.00 0.00 0.00 3.18
69 70 0.685097 AGCTTTTCAGTCGCCTACCA 59.315 50.000 0.00 0.00 0.00 3.25
70 71 1.279271 AGCTTTTCAGTCGCCTACCAT 59.721 47.619 0.00 0.00 0.00 3.55
71 72 1.398390 GCTTTTCAGTCGCCTACCATG 59.602 52.381 0.00 0.00 0.00 3.66
72 73 2.935238 GCTTTTCAGTCGCCTACCATGA 60.935 50.000 0.00 0.00 0.00 3.07
73 74 2.380084 TTTCAGTCGCCTACCATGAC 57.620 50.000 0.00 0.00 0.00 3.06
74 75 0.535335 TTCAGTCGCCTACCATGACC 59.465 55.000 0.00 0.00 33.09 4.02
75 76 1.144057 CAGTCGCCTACCATGACCC 59.856 63.158 0.00 0.00 33.09 4.46
76 77 1.305802 AGTCGCCTACCATGACCCA 60.306 57.895 0.00 0.00 33.09 4.51
77 78 1.153429 GTCGCCTACCATGACCCAC 60.153 63.158 0.00 0.00 0.00 4.61
78 79 1.305802 TCGCCTACCATGACCCACT 60.306 57.895 0.00 0.00 0.00 4.00
79 80 1.153369 CGCCTACCATGACCCACTG 60.153 63.158 0.00 0.00 0.00 3.66
80 81 1.613317 CGCCTACCATGACCCACTGA 61.613 60.000 0.00 0.00 0.00 3.41
81 82 0.179000 GCCTACCATGACCCACTGAG 59.821 60.000 0.00 0.00 0.00 3.35
82 83 0.833287 CCTACCATGACCCACTGAGG 59.167 60.000 0.00 0.00 37.03 3.86
83 84 0.179000 CTACCATGACCCACTGAGGC 59.821 60.000 0.00 0.00 35.39 4.70
84 85 1.271840 TACCATGACCCACTGAGGCC 61.272 60.000 0.00 0.00 35.39 5.19
85 86 2.273449 CATGACCCACTGAGGCCC 59.727 66.667 0.00 0.00 35.39 5.80
86 87 2.204136 ATGACCCACTGAGGCCCA 60.204 61.111 0.00 0.00 35.39 5.36
87 88 2.606587 ATGACCCACTGAGGCCCAC 61.607 63.158 0.00 0.00 35.39 4.61
88 89 2.930562 GACCCACTGAGGCCCACT 60.931 66.667 0.00 0.00 35.39 4.00
89 90 3.252284 ACCCACTGAGGCCCACTG 61.252 66.667 0.00 0.46 35.39 3.66
90 91 2.930019 CCCACTGAGGCCCACTGA 60.930 66.667 0.00 0.00 35.39 3.41
91 92 2.667418 CCACTGAGGCCCACTGAG 59.333 66.667 0.00 0.00 36.40 3.35
92 93 2.667418 CACTGAGGCCCACTGAGG 59.333 66.667 0.00 0.00 34.38 3.86
93 94 1.915266 CACTGAGGCCCACTGAGGA 60.915 63.158 0.00 0.00 41.22 3.71
94 95 1.915769 ACTGAGGCCCACTGAGGAC 60.916 63.158 0.00 0.00 41.22 3.85
95 96 1.915266 CTGAGGCCCACTGAGGACA 60.915 63.158 0.00 0.00 37.41 4.02
96 97 1.461268 TGAGGCCCACTGAGGACAA 60.461 57.895 0.00 0.00 37.41 3.18
97 98 1.059584 TGAGGCCCACTGAGGACAAA 61.060 55.000 0.00 0.00 37.41 2.83
98 99 0.110486 GAGGCCCACTGAGGACAAAA 59.890 55.000 0.00 0.00 37.41 2.44
99 100 0.111253 AGGCCCACTGAGGACAAAAG 59.889 55.000 0.00 0.00 37.41 2.27
100 101 1.527433 GGCCCACTGAGGACAAAAGC 61.527 60.000 0.00 0.00 41.22 3.51
101 102 0.823356 GCCCACTGAGGACAAAAGCA 60.823 55.000 0.00 0.00 41.22 3.91
102 103 1.915141 CCCACTGAGGACAAAAGCAT 58.085 50.000 0.00 0.00 41.22 3.79
103 104 1.815003 CCCACTGAGGACAAAAGCATC 59.185 52.381 0.00 0.00 41.22 3.91
104 105 1.815003 CCACTGAGGACAAAAGCATCC 59.185 52.381 0.00 0.00 41.22 3.51
105 106 2.507484 CACTGAGGACAAAAGCATCCA 58.493 47.619 0.00 0.00 37.47 3.41
106 107 3.087031 CACTGAGGACAAAAGCATCCAT 58.913 45.455 0.00 0.00 37.47 3.41
107 108 3.087031 ACTGAGGACAAAAGCATCCATG 58.913 45.455 0.00 0.00 37.47 3.66
108 109 3.087031 CTGAGGACAAAAGCATCCATGT 58.913 45.455 0.00 0.00 37.47 3.21
109 110 2.821378 TGAGGACAAAAGCATCCATGTG 59.179 45.455 0.00 0.00 37.47 3.21
110 111 1.547372 AGGACAAAAGCATCCATGTGC 59.453 47.619 0.10 0.10 45.38 4.57
116 117 4.489249 GCATCCATGTGCAGTTGC 57.511 55.556 3.55 0.00 44.43 4.17
117 118 1.888018 GCATCCATGTGCAGTTGCT 59.112 52.632 5.62 0.00 44.43 3.91
118 119 0.179145 GCATCCATGTGCAGTTGCTC 60.179 55.000 5.62 2.44 44.43 4.26
119 120 0.098200 CATCCATGTGCAGTTGCTCG 59.902 55.000 5.62 0.00 42.66 5.03
120 121 0.036105 ATCCATGTGCAGTTGCTCGA 60.036 50.000 5.62 0.00 42.66 4.04
121 122 0.036105 TCCATGTGCAGTTGCTCGAT 60.036 50.000 5.62 0.00 42.66 3.59
122 123 0.806868 CCATGTGCAGTTGCTCGATT 59.193 50.000 5.62 0.00 42.66 3.34
123 124 2.009051 CCATGTGCAGTTGCTCGATTA 58.991 47.619 5.62 0.00 42.66 1.75
124 125 2.031314 CCATGTGCAGTTGCTCGATTAG 59.969 50.000 5.62 0.00 42.66 1.73
125 126 2.741759 TGTGCAGTTGCTCGATTAGA 57.258 45.000 5.62 0.00 42.66 2.10
136 137 6.721571 TTGCTCGATTAGAGTAAACCAAAG 57.278 37.500 0.00 0.00 46.18 2.77
137 138 6.460781 TTGCTCGATTAGAGTAAACCAAAGA 58.539 36.000 0.00 0.00 46.18 2.52
138 139 6.590292 TTGCTCGATTAGAGTAAACCAAAGAG 59.410 38.462 0.00 0.00 46.18 2.85
139 140 8.270489 TTGCTCGATTAGAGTAAACCAAAGAGG 61.270 40.741 0.00 0.00 46.18 3.69
140 141 5.416947 TCGATTAGAGTAAACCAAAGAGGC 58.583 41.667 0.00 0.00 43.14 4.70
141 142 4.571176 CGATTAGAGTAAACCAAAGAGGCC 59.429 45.833 0.00 0.00 43.14 5.19
142 143 5.627040 CGATTAGAGTAAACCAAAGAGGCCT 60.627 44.000 3.86 3.86 43.14 5.19
143 144 5.578157 TTAGAGTAAACCAAAGAGGCCTT 57.422 39.130 6.77 0.00 43.14 4.35
144 145 4.022413 AGAGTAAACCAAAGAGGCCTTC 57.978 45.455 6.77 0.00 43.14 3.46
145 146 3.653352 AGAGTAAACCAAAGAGGCCTTCT 59.347 43.478 6.77 2.22 43.14 2.85
146 147 3.753797 GAGTAAACCAAAGAGGCCTTCTG 59.246 47.826 6.77 4.55 43.14 3.02
147 148 3.394606 AGTAAACCAAAGAGGCCTTCTGA 59.605 43.478 6.77 0.00 43.14 3.27
148 149 2.575805 AACCAAAGAGGCCTTCTGAG 57.424 50.000 6.77 0.00 43.14 3.35
149 150 0.037447 ACCAAAGAGGCCTTCTGAGC 59.963 55.000 6.77 0.00 43.14 4.26
150 151 0.037303 CCAAAGAGGCCTTCTGAGCA 59.963 55.000 6.77 0.00 35.91 4.26
151 152 1.163554 CAAAGAGGCCTTCTGAGCAC 58.836 55.000 6.77 0.00 35.91 4.40
152 153 1.063183 AAAGAGGCCTTCTGAGCACT 58.937 50.000 6.77 0.00 35.91 4.40
153 154 1.063183 AAGAGGCCTTCTGAGCACTT 58.937 50.000 6.77 0.00 35.91 3.16
154 155 0.324285 AGAGGCCTTCTGAGCACTTG 59.676 55.000 6.77 0.00 33.93 3.16
155 156 1.303155 AGGCCTTCTGAGCACTTGC 60.303 57.895 0.00 0.00 42.49 4.01
167 168 2.159327 GCACTTGCTTTTGGATTGCT 57.841 45.000 0.00 0.00 38.21 3.91
168 169 2.064014 GCACTTGCTTTTGGATTGCTC 58.936 47.619 0.00 0.00 38.21 4.26
169 170 2.680577 CACTTGCTTTTGGATTGCTCC 58.319 47.619 0.00 0.00 42.45 4.70
170 171 5.663477 GCACTTGCTTTTGGATTGCTCCA 62.663 47.826 0.00 0.00 43.17 3.86
207 208 8.458052 TGCCATACATAAAAGTACAAACAGATG 58.542 33.333 0.00 0.00 0.00 2.90
220 221 4.940046 ACAAACAGATGGATCTAACTGCTG 59.060 41.667 15.00 14.23 34.85 4.41
229 230 1.996292 TCTAACTGCTGTGTCATCGC 58.004 50.000 0.00 0.00 0.00 4.58
273 275 1.168714 GTCCTTGACTGCCAATCCAC 58.831 55.000 0.00 0.00 33.68 4.02
280 282 2.106338 TGACTGCCAATCCACTTGAGAA 59.894 45.455 0.00 0.00 36.97 2.87
287 289 7.038799 ACTGCCAATCCACTTGAGAAATAATTT 60.039 33.333 0.00 0.00 36.97 1.82
324 326 2.095364 CCAGTTTGCTGAACTCATGCTC 60.095 50.000 3.50 0.00 45.40 4.26
328 330 0.671472 TGCTGAACTCATGCTCACGG 60.671 55.000 0.00 0.00 0.00 4.94
350 352 0.826715 TCAGCTATGTCACTGCTCCC 59.173 55.000 0.00 0.00 34.51 4.30
368 373 1.675415 CCCTCTGACTTCTGCTTGCTC 60.675 57.143 0.00 0.00 0.00 4.26
373 378 1.336887 TGACTTCTGCTTGCTCGTACC 60.337 52.381 0.00 0.00 0.00 3.34
377 382 2.124277 TCTGCTTGCTCGTACCTAGA 57.876 50.000 0.00 0.00 0.00 2.43
385 390 1.202428 GCTCGTACCTAGAAGCCAAGG 60.202 57.143 0.00 0.00 38.93 3.61
390 395 3.676324 CGTACCTAGAAGCCAAGGAAGTG 60.676 52.174 0.00 0.00 36.66 3.16
393 398 2.079925 CTAGAAGCCAAGGAAGTGCAC 58.920 52.381 9.40 9.40 0.00 4.57
402 407 3.152341 CAAGGAAGTGCACTCCAAAGAT 58.848 45.455 26.77 10.64 0.00 2.40
403 408 3.064900 AGGAAGTGCACTCCAAAGATC 57.935 47.619 26.77 17.28 0.00 2.75
408 418 1.541588 GTGCACTCCAAAGATCCAACC 59.458 52.381 10.32 0.00 0.00 3.77
419 429 0.454600 GATCCAACCATGCTGTGCAG 59.545 55.000 0.00 0.00 43.65 4.41
420 430 0.038599 ATCCAACCATGCTGTGCAGA 59.961 50.000 3.02 0.00 43.65 4.26
421 431 0.178995 TCCAACCATGCTGTGCAGAA 60.179 50.000 3.02 0.00 43.65 3.02
422 432 0.675083 CCAACCATGCTGTGCAGAAA 59.325 50.000 3.02 0.00 43.65 2.52
423 433 1.068895 CCAACCATGCTGTGCAGAAAA 59.931 47.619 3.02 0.00 43.65 2.29
424 434 2.289195 CCAACCATGCTGTGCAGAAAAT 60.289 45.455 3.02 0.00 43.65 1.82
425 435 3.395639 CAACCATGCTGTGCAGAAAATT 58.604 40.909 3.02 0.00 43.65 1.82
426 436 3.756933 ACCATGCTGTGCAGAAAATTT 57.243 38.095 3.02 0.00 43.65 1.82
427 437 3.395639 ACCATGCTGTGCAGAAAATTTG 58.604 40.909 3.02 0.00 43.65 2.32
439 635 5.693104 TGCAGAAAATTTGCTCAGAAACATC 59.307 36.000 0.00 0.00 42.02 3.06
440 636 5.693104 GCAGAAAATTTGCTCAGAAACATCA 59.307 36.000 0.00 0.00 38.51 3.07
443 639 7.384115 CAGAAAATTTGCTCAGAAACATCACAT 59.616 33.333 0.00 0.00 0.00 3.21
444 640 7.929785 AGAAAATTTGCTCAGAAACATCACATT 59.070 29.630 0.00 0.00 0.00 2.71
487 685 7.603651 ACTATTATATGCGAGGTTTAGTCCTG 58.396 38.462 0.00 0.00 38.02 3.86
488 686 3.753294 ATATGCGAGGTTTAGTCCTGG 57.247 47.619 0.00 0.00 38.02 4.45
495 693 1.376812 GTTTAGTCCTGGGGCCACG 60.377 63.158 4.39 0.00 0.00 4.94
507 713 2.669569 GCCACGTGCCAGTGACAT 60.670 61.111 10.91 0.00 44.43 3.06
536 742 8.251750 TCACTATTCTGTGTACTTAATGTTGC 57.748 34.615 0.00 0.00 38.90 4.17
567 773 5.841957 AAGCTGAATCTTCAACACAGTTT 57.158 34.783 0.00 0.00 36.64 2.66
570 776 4.036734 GCTGAATCTTCAACACAGTTTCCA 59.963 41.667 0.00 0.00 36.64 3.53
597 804 9.739276 ATTATTATTTGTTCTCAAGAGTGGACA 57.261 29.630 0.00 0.00 34.88 4.02
607 814 5.246883 TCTCAAGAGTGGACATGATTCTTCA 59.753 40.000 0.00 0.00 36.00 3.02
612 819 2.749621 GTGGACATGATTCTTCACCACC 59.250 50.000 0.00 0.00 39.17 4.61
646 855 6.387192 TCCCAATCTAAGTTCATCCTGAAA 57.613 37.500 0.00 0.00 38.22 2.69
647 856 6.180472 TCCCAATCTAAGTTCATCCTGAAAC 58.820 40.000 0.00 0.00 38.22 2.78
653 862 2.157738 AGTTCATCCTGAAACAGCAGC 58.842 47.619 0.00 0.00 38.22 5.25
659 868 5.683681 TCATCCTGAAACAGCAGCATATAA 58.316 37.500 0.00 0.00 34.56 0.98
667 876 9.170734 CTGAAACAGCAGCATATAATATGGTAT 57.829 33.333 0.00 0.00 0.00 2.73
698 907 9.622004 GAAATATGCATATGGAGAACTTGATTG 57.378 33.333 19.77 0.00 0.00 2.67
730 940 4.396357 TCCAACCCAAAATATCCACACT 57.604 40.909 0.00 0.00 0.00 3.55
745 955 5.881923 TCCACACTAAGTCTTACCAAACT 57.118 39.130 0.00 0.00 0.00 2.66
779 989 5.393962 AGATATCAAAGTTGCGCTTGAAAC 58.606 37.500 12.98 7.03 37.52 2.78
788 998 3.552604 TGCGCTTGAAACCTAATCAAC 57.447 42.857 9.73 0.00 33.47 3.18
789 999 3.146066 TGCGCTTGAAACCTAATCAACT 58.854 40.909 9.73 0.00 33.47 3.16
801 1011 7.484035 AACCTAATCAACTCATAAGCGATTC 57.516 36.000 0.00 0.00 32.82 2.52
803 1013 6.926272 ACCTAATCAACTCATAAGCGATTCTC 59.074 38.462 0.00 0.00 32.82 2.87
807 1034 5.111989 TCAACTCATAAGCGATTCTCTTGG 58.888 41.667 0.00 0.00 0.00 3.61
821 1048 1.303888 CTTGGCCACATGACTGCCT 60.304 57.895 3.88 0.00 45.56 4.75
823 1050 0.625316 TTGGCCACATGACTGCCTAT 59.375 50.000 3.88 0.00 45.56 2.57
834 1078 4.864704 TGACTGCCTATTTTCCAAAACC 57.135 40.909 0.00 0.00 0.00 3.27
837 1081 1.896465 TGCCTATTTTCCAAAACCCCG 59.104 47.619 0.00 0.00 0.00 5.73
838 1082 1.897133 GCCTATTTTCCAAAACCCCGT 59.103 47.619 0.00 0.00 0.00 5.28
847 1091 4.847990 TCCAAAACCCCGTGAATATAGT 57.152 40.909 0.00 0.00 0.00 2.12
850 1094 6.902408 TCCAAAACCCCGTGAATATAGTAAT 58.098 36.000 0.00 0.00 0.00 1.89
860 1104 7.043391 CCCGTGAATATAGTAATATGCATGTCG 60.043 40.741 10.16 0.00 38.34 4.35
861 1105 7.330318 CGTGAATATAGTAATATGCATGTCGC 58.670 38.462 10.16 0.00 36.26 5.19
863 1107 9.516314 GTGAATATAGTAATATGCATGTCGCTA 57.484 33.333 10.16 9.14 36.26 4.26
873 1117 3.969899 TGCATGTCGCTATTCTAGTCTG 58.030 45.455 0.00 0.00 43.06 3.51
876 1120 4.793071 CATGTCGCTATTCTAGTCTGGAG 58.207 47.826 0.00 0.00 0.00 3.86
889 1133 3.869623 CTGGAGGACAGGGACATTG 57.130 57.895 0.00 0.00 43.70 2.82
892 1136 1.280457 GGAGGACAGGGACATTGACT 58.720 55.000 0.00 0.00 0.00 3.41
895 1139 3.339141 GAGGACAGGGACATTGACTTTC 58.661 50.000 0.00 0.00 0.00 2.62
898 1142 2.814336 GACAGGGACATTGACTTTCACC 59.186 50.000 0.00 0.00 0.00 4.02
911 1158 4.825085 TGACTTTCACCAAACCCAAGATAC 59.175 41.667 0.00 0.00 0.00 2.24
917 1164 1.818674 CCAAACCCAAGATACAGTGGC 59.181 52.381 0.00 0.00 33.21 5.01
922 1169 0.749454 CCAAGATACAGTGGCTGGCC 60.749 60.000 4.43 4.43 35.51 5.36
939 1186 1.571919 GCCGGCTGTGTAGATTACAG 58.428 55.000 22.15 0.00 46.37 2.74
967 1214 8.970859 ATAAGATGCATAGGGTAAGCATATTC 57.029 34.615 9.39 0.00 44.11 1.75
1004 1251 4.326255 GCAGGCAGCTGTAATGGT 57.674 55.556 16.64 0.00 41.15 3.55
1006 1253 0.453390 GCAGGCAGCTGTAATGGTTC 59.547 55.000 16.64 0.00 41.15 3.62
1095 1345 2.642171 TCACCCTCTACATCCTTGGT 57.358 50.000 0.00 0.00 0.00 3.67
1263 1513 2.525784 CAGCAGGCTGGTCTATCCT 58.474 57.895 17.69 0.00 40.17 3.24
1415 1665 9.476202 TGATTAATAACTAGTCCATGTTGATCG 57.524 33.333 0.00 0.00 0.00 3.69
1416 1666 9.477484 GATTAATAACTAGTCCATGTTGATCGT 57.523 33.333 0.00 0.00 0.00 3.73
1417 1667 8.867112 TTAATAACTAGTCCATGTTGATCGTC 57.133 34.615 0.00 0.00 0.00 4.20
1418 1668 6.716934 ATAACTAGTCCATGTTGATCGTCT 57.283 37.500 0.00 0.00 0.00 4.18
1419 1669 4.640789 ACTAGTCCATGTTGATCGTCTC 57.359 45.455 0.00 0.00 0.00 3.36
1420 1670 4.274147 ACTAGTCCATGTTGATCGTCTCT 58.726 43.478 0.00 0.00 0.00 3.10
1421 1671 3.516981 AGTCCATGTTGATCGTCTCTG 57.483 47.619 0.00 0.00 0.00 3.35
1422 1672 2.828520 AGTCCATGTTGATCGTCTCTGT 59.171 45.455 0.00 0.00 0.00 3.41
1423 1673 3.259374 AGTCCATGTTGATCGTCTCTGTT 59.741 43.478 0.00 0.00 0.00 3.16
1424 1674 3.614616 GTCCATGTTGATCGTCTCTGTTC 59.385 47.826 0.00 0.00 0.00 3.18
1425 1675 2.932614 CCATGTTGATCGTCTCTGTTCC 59.067 50.000 0.00 0.00 0.00 3.62
1426 1676 3.368843 CCATGTTGATCGTCTCTGTTCCT 60.369 47.826 0.00 0.00 0.00 3.36
1427 1677 3.577649 TGTTGATCGTCTCTGTTCCTC 57.422 47.619 0.00 0.00 0.00 3.71
1428 1678 2.231478 TGTTGATCGTCTCTGTTCCTCC 59.769 50.000 0.00 0.00 0.00 4.30
1429 1679 2.494073 GTTGATCGTCTCTGTTCCTCCT 59.506 50.000 0.00 0.00 0.00 3.69
1430 1680 2.370349 TGATCGTCTCTGTTCCTCCTC 58.630 52.381 0.00 0.00 0.00 3.71
1431 1681 2.025793 TGATCGTCTCTGTTCCTCCTCT 60.026 50.000 0.00 0.00 0.00 3.69
1432 1682 1.827681 TCGTCTCTGTTCCTCCTCTG 58.172 55.000 0.00 0.00 0.00 3.35
1433 1683 0.172352 CGTCTCTGTTCCTCCTCTGC 59.828 60.000 0.00 0.00 0.00 4.26
1434 1684 0.534873 GTCTCTGTTCCTCCTCTGCC 59.465 60.000 0.00 0.00 0.00 4.85
1435 1685 0.411452 TCTCTGTTCCTCCTCTGCCT 59.589 55.000 0.00 0.00 0.00 4.75
1436 1686 1.203237 TCTCTGTTCCTCCTCTGCCTT 60.203 52.381 0.00 0.00 0.00 4.35
1437 1687 1.627834 CTCTGTTCCTCCTCTGCCTTT 59.372 52.381 0.00 0.00 0.00 3.11
1438 1688 1.625818 TCTGTTCCTCCTCTGCCTTTC 59.374 52.381 0.00 0.00 0.00 2.62
1439 1689 1.627834 CTGTTCCTCCTCTGCCTTTCT 59.372 52.381 0.00 0.00 0.00 2.52
1440 1690 2.039613 CTGTTCCTCCTCTGCCTTTCTT 59.960 50.000 0.00 0.00 0.00 2.52
1441 1691 3.248024 TGTTCCTCCTCTGCCTTTCTTA 58.752 45.455 0.00 0.00 0.00 2.10
1442 1692 3.650942 TGTTCCTCCTCTGCCTTTCTTAA 59.349 43.478 0.00 0.00 0.00 1.85
1443 1693 4.289672 TGTTCCTCCTCTGCCTTTCTTAAT 59.710 41.667 0.00 0.00 0.00 1.40
1444 1694 4.494091 TCCTCCTCTGCCTTTCTTAATG 57.506 45.455 0.00 0.00 0.00 1.90
1445 1695 4.104086 TCCTCCTCTGCCTTTCTTAATGA 58.896 43.478 0.00 0.00 0.00 2.57
1446 1696 4.723789 TCCTCCTCTGCCTTTCTTAATGAT 59.276 41.667 0.00 0.00 0.00 2.45
1447 1697 5.192522 TCCTCCTCTGCCTTTCTTAATGATT 59.807 40.000 0.00 0.00 0.00 2.57
1448 1698 6.386927 TCCTCCTCTGCCTTTCTTAATGATTA 59.613 38.462 0.00 0.00 0.00 1.75
1449 1699 7.056635 CCTCCTCTGCCTTTCTTAATGATTAA 58.943 38.462 0.00 0.00 0.00 1.40
1450 1700 7.723172 CCTCCTCTGCCTTTCTTAATGATTAAT 59.277 37.037 0.00 0.00 0.00 1.40
1451 1701 9.784531 CTCCTCTGCCTTTCTTAATGATTAATA 57.215 33.333 0.00 0.00 0.00 0.98
1497 1747 2.739943 TCCTCCATACAGTGAGGAGTG 58.260 52.381 21.14 15.46 45.92 3.51
1611 1861 9.305555 AGTAGTTTCTTCAGTGGTAACTACATA 57.694 33.333 23.65 0.00 46.81 2.29
1689 1939 8.531982 AGACATTCAGCTGACAGTTATTAAGTA 58.468 33.333 18.03 0.00 0.00 2.24
1690 1940 9.151471 GACATTCAGCTGACAGTTATTAAGTAA 57.849 33.333 18.03 0.00 0.00 2.24
1691 1941 9.502091 ACATTCAGCTGACAGTTATTAAGTAAA 57.498 29.630 18.03 0.00 0.00 2.01
1692 1942 9.760660 CATTCAGCTGACAGTTATTAAGTAAAC 57.239 33.333 18.03 0.00 0.00 2.01
1693 1943 8.896320 TTCAGCTGACAGTTATTAAGTAAACA 57.104 30.769 18.03 0.00 0.00 2.83
1694 1944 8.306680 TCAGCTGACAGTTATTAAGTAAACAC 57.693 34.615 13.74 0.00 0.00 3.32
1695 1945 7.929245 TCAGCTGACAGTTATTAAGTAAACACA 59.071 33.333 13.74 0.00 0.00 3.72
1696 1946 8.009974 CAGCTGACAGTTATTAAGTAAACACAC 58.990 37.037 8.42 0.00 0.00 3.82
1697 1947 7.713507 AGCTGACAGTTATTAAGTAAACACACA 59.286 33.333 3.99 0.00 0.00 3.72
1698 1948 7.797123 GCTGACAGTTATTAAGTAAACACACAC 59.203 37.037 3.99 0.00 0.00 3.82
1699 1949 8.719560 TGACAGTTATTAAGTAAACACACACA 57.280 30.769 2.22 0.00 0.00 3.72
1700 1950 9.163899 TGACAGTTATTAAGTAAACACACACAA 57.836 29.630 2.22 0.00 0.00 3.33
1708 1958 9.772973 ATTAAGTAAACACACACAATCTACTCA 57.227 29.630 0.00 0.00 0.00 3.41
1709 1959 9.772973 TTAAGTAAACACACACAATCTACTCAT 57.227 29.630 0.00 0.00 0.00 2.90
1711 1961 8.988064 AGTAAACACACACAATCTACTCATAG 57.012 34.615 0.00 0.00 0.00 2.23
1712 1962 8.585881 AGTAAACACACACAATCTACTCATAGT 58.414 33.333 0.00 0.00 0.00 2.12
1713 1963 7.658179 AAACACACACAATCTACTCATAGTG 57.342 36.000 0.00 0.00 0.00 2.74
1714 1964 5.171476 ACACACACAATCTACTCATAGTGC 58.829 41.667 0.00 0.00 0.00 4.40
1715 1965 5.170748 CACACACAATCTACTCATAGTGCA 58.829 41.667 0.00 0.00 0.00 4.57
1716 1966 5.639082 CACACACAATCTACTCATAGTGCAA 59.361 40.000 0.00 0.00 0.00 4.08
1717 1967 6.314648 CACACACAATCTACTCATAGTGCAAT 59.685 38.462 0.00 0.00 0.00 3.56
1718 1968 7.492344 CACACACAATCTACTCATAGTGCAATA 59.508 37.037 0.00 0.00 0.00 1.90
1750 2027 6.885376 GCAATCTCCATTCAGAATAGGATGAT 59.115 38.462 12.23 12.95 0.00 2.45
1756 2033 8.908786 TCCATTCAGAATAGGATGATTAACAC 57.091 34.615 9.19 0.00 0.00 3.32
1790 2067 3.550437 ATCTAATCGCAAAGAGGCAGT 57.450 42.857 0.00 0.00 0.00 4.40
1808 2085 8.265764 AGAGGCAGTTATTAACCTTAAACCTAG 58.734 37.037 2.92 0.00 30.95 3.02
1851 2128 5.123979 GCTCATGTTTTACCCCTACAAGAAG 59.876 44.000 0.00 0.00 0.00 2.85
2116 2393 7.410800 TGTTTTCAGAATTAATGCTGCAAAG 57.589 32.000 18.27 0.00 30.20 2.77
2131 2408 1.817447 GCAAAGCTGGCAGAGAAGATT 59.183 47.619 20.86 0.00 0.00 2.40
2153 2430 2.101415 TCATACGCAGCAGCTAACAGAT 59.899 45.455 0.00 0.00 39.10 2.90
2189 2470 4.469586 TGCAGGTACTTCCATGACTATCAA 59.530 41.667 0.00 0.00 34.60 2.57
2190 2471 5.130975 TGCAGGTACTTCCATGACTATCAAT 59.869 40.000 0.00 0.00 34.60 2.57
2312 2611 7.703058 AAGTGAATTTAATCCTACACCCAAG 57.297 36.000 0.00 0.00 0.00 3.61
2395 2766 9.632638 AAAACTTGTAGATTGGACTATGCATAT 57.367 29.630 6.92 0.00 0.00 1.78
2469 2851 2.945008 CTGCAAAGTTCAGAGACCAACA 59.055 45.455 0.00 0.00 33.54 3.33
2816 3216 2.754552 GCATGATCAAGTAAGGGCAACA 59.245 45.455 0.00 0.00 39.74 3.33
2824 3224 4.953579 TCAAGTAAGGGCAACAAAACTCTT 59.046 37.500 0.00 0.00 39.74 2.85
2830 3230 4.003648 AGGGCAACAAAACTCTTATCTCG 58.996 43.478 0.00 0.00 39.74 4.04
2890 3290 9.349713 ACAGTTTTATAATGTCCAAGTCTCAAA 57.650 29.630 0.00 0.00 0.00 2.69
2946 3346 9.592196 ACTTGGCATTGAAATAGATATTGGTAT 57.408 29.630 0.00 0.00 0.00 2.73
3087 3550 9.640963 GTAGTATAATGTTGGTCATCTGGATAC 57.359 37.037 0.00 0.00 35.48 2.24
3168 3631 9.091784 CTGCATATACCATGCTGTATTAACTAG 57.908 37.037 10.30 0.00 44.79 2.57
3171 3634 6.688073 ATACCATGCTGTATTAACTAGGCT 57.312 37.500 0.00 0.00 0.00 4.58
3799 4294 3.961408 AGGGTGTAGGATTGTAGCTGTAG 59.039 47.826 0.00 0.00 0.00 2.74
3994 4496 5.535043 GCATTGCCATGGTTAAGAAAAAG 57.465 39.130 14.67 0.00 0.00 2.27
4369 4878 8.699749 GGTGAAAAGCATATTAAAAAGTCACAC 58.300 33.333 0.00 0.00 34.69 3.82
4511 5149 2.766313 ACTGACATCAAGCGCTTACAA 58.234 42.857 24.55 11.93 0.00 2.41
4548 5192 6.389830 AAAGTCTGCATGTGTTAACATCAA 57.610 33.333 12.26 1.29 45.50 2.57
4555 5199 7.121611 TCTGCATGTGTTAACATCAATTCTCAT 59.878 33.333 12.26 5.00 45.50 2.90
4720 5366 0.830648 TGGCTGCTACCCTGATACAC 59.169 55.000 0.00 0.00 0.00 2.90
4793 5439 8.455903 AACAATGTTTACTCTCCATATGGATG 57.544 34.615 24.73 20.81 44.46 3.51
4871 5517 6.609212 ACAGGCTACTAGATCTTTTCTGATCA 59.391 38.462 0.00 0.00 43.76 2.92
4940 5586 7.269316 TGTAATAATAATGTCCAGTTCTCGCA 58.731 34.615 0.00 0.00 0.00 5.10
4941 5587 7.931407 TGTAATAATAATGTCCAGTTCTCGCAT 59.069 33.333 0.00 0.00 0.00 4.73
4943 5589 8.902540 AATAATAATGTCCAGTTCTCGCATAA 57.097 30.769 0.00 0.00 0.00 1.90
4944 5590 6.851222 AATAATGTCCAGTTCTCGCATAAG 57.149 37.500 0.00 0.00 0.00 1.73
4946 5592 3.953712 TGTCCAGTTCTCGCATAAGAA 57.046 42.857 0.00 0.00 32.92 2.52
4947 5593 3.849911 TGTCCAGTTCTCGCATAAGAAG 58.150 45.455 0.00 0.00 35.99 2.85
4949 5595 4.021456 TGTCCAGTTCTCGCATAAGAAGAA 60.021 41.667 0.00 0.00 35.99 2.52
4950 5596 4.327627 GTCCAGTTCTCGCATAAGAAGAAC 59.672 45.833 6.41 6.41 35.99 3.01
4951 5597 4.021456 TCCAGTTCTCGCATAAGAAGAACA 60.021 41.667 14.73 0.00 40.68 3.18
4952 5598 4.690748 CCAGTTCTCGCATAAGAAGAACAA 59.309 41.667 14.73 0.00 40.68 2.83
4953 5599 5.179368 CCAGTTCTCGCATAAGAAGAACAAA 59.821 40.000 14.73 0.00 40.68 2.83
4954 5600 6.128172 CCAGTTCTCGCATAAGAAGAACAAAT 60.128 38.462 14.73 0.00 40.68 2.32
4955 5601 7.301054 CAGTTCTCGCATAAGAAGAACAAATT 58.699 34.615 14.73 0.00 40.68 1.82
4970 5616 8.644374 AAGAACAAATTAAGTAGCATGGGTTA 57.356 30.769 0.00 0.00 0.00 2.85
4974 5620 7.781056 ACAAATTAAGTAGCATGGGTTAATGG 58.219 34.615 0.00 0.00 0.00 3.16
4984 5630 4.473444 CATGGGTTAATGGTCCTATTGCT 58.527 43.478 0.00 0.00 0.00 3.91
4985 5631 3.897239 TGGGTTAATGGTCCTATTGCTG 58.103 45.455 0.00 0.00 0.00 4.41
4986 5632 3.525609 TGGGTTAATGGTCCTATTGCTGA 59.474 43.478 0.00 0.00 0.00 4.26
4987 5633 4.017958 TGGGTTAATGGTCCTATTGCTGAA 60.018 41.667 0.00 0.00 0.00 3.02
5036 5682 2.246327 TCCCAGAATTCCCAATTACCCC 59.754 50.000 0.65 0.00 0.00 4.95
5057 5703 8.814038 ACCCCAGAATGATATAATAATTGCTC 57.186 34.615 0.00 0.00 39.69 4.26
5059 5705 8.900781 CCCCAGAATGATATAATAATTGCTCTG 58.099 37.037 0.00 0.00 39.69 3.35
5079 5725 2.430332 TGGGGAAGCAAAACAGAACAAG 59.570 45.455 0.00 0.00 0.00 3.16
5138 5784 4.488126 TGCTTACAAGAGATTGCACAAC 57.512 40.909 0.00 0.00 0.00 3.32
5217 5863 7.175347 ACACAGATGTTTATTCAGCTAGAGA 57.825 36.000 0.00 0.00 34.46 3.10
5330 5976 4.378459 CCAAATGACTCTTCCGCTACAAAC 60.378 45.833 0.00 0.00 0.00 2.93
5331 5977 3.678056 ATGACTCTTCCGCTACAAACA 57.322 42.857 0.00 0.00 0.00 2.83
5340 5986 2.869801 TCCGCTACAAACACAAGAACAG 59.130 45.455 0.00 0.00 0.00 3.16
5345 5991 3.216147 ACAAACACAAGAACAGCACAC 57.784 42.857 0.00 0.00 0.00 3.82
5350 5996 4.616181 ACACAAGAACAGCACACTTAAC 57.384 40.909 0.00 0.00 0.00 2.01
5506 6152 2.097825 GTCTCGGACTTACCAGCCTTA 58.902 52.381 0.00 0.00 38.90 2.69
5537 6183 6.364568 TTTTCTTCTCATCCAGATGTCTGA 57.635 37.500 11.47 2.97 46.59 3.27
5547 6193 5.183530 TCCAGATGTCTGAAACCAATGAT 57.816 39.130 11.47 0.00 46.59 2.45
5557 6203 9.112725 TGTCTGAAACCAATGATACAAGATATG 57.887 33.333 0.00 0.00 0.00 1.78
5586 6232 9.719355 ATCATCCATTTATTATACGTTGCTACA 57.281 29.630 0.00 0.00 0.00 2.74
5589 6235 7.857569 TCCATTTATTATACGTTGCTACAAGC 58.142 34.615 0.00 0.00 42.82 4.01
5626 6272 3.447586 TCTTAAGCAGGTGCCTACTACAG 59.552 47.826 0.00 0.00 43.38 2.74
5627 6273 0.250513 AAGCAGGTGCCTACTACAGC 59.749 55.000 0.00 0.00 43.38 4.40
5639 6285 4.680708 GCCTACTACAGCAGAGCATTTGTA 60.681 45.833 0.00 0.00 0.00 2.41
5696 6342 9.486497 CATCACTTGAAGCAAGATACTATGTAT 57.514 33.333 13.56 0.00 43.42 2.29
5736 6382 5.406175 CACCAGGCAACATAGAAACAAAATG 59.594 40.000 0.00 0.00 41.41 2.32
5757 6404 4.081406 TGGATTGATGCAAAAGCTACACT 58.919 39.130 0.00 0.00 0.00 3.55
5758 6405 4.082625 TGGATTGATGCAAAAGCTACACTG 60.083 41.667 0.00 0.00 0.00 3.66
5797 6444 5.192522 ACCAGGACAGATCAAATGGTTAGAT 59.807 40.000 0.00 0.00 35.35 1.98
5798 6445 5.762218 CCAGGACAGATCAAATGGTTAGATC 59.238 44.000 0.00 0.00 38.70 2.75
5825 6472 5.888161 TCACTTCTTCCTTTTCTGCTTCTTT 59.112 36.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.202080 TGCCTTCATATTTGAGCTGATTGC 60.202 41.667 0.00 0.00 43.29 3.56
4 5 5.163591 TGTGCCTTCATATTTGAGCTGATTG 60.164 40.000 0.00 0.00 32.27 2.67
5 6 4.951715 TGTGCCTTCATATTTGAGCTGATT 59.048 37.500 0.00 0.00 32.27 2.57
6 7 4.529897 TGTGCCTTCATATTTGAGCTGAT 58.470 39.130 0.00 0.00 32.27 2.90
7 8 3.954200 TGTGCCTTCATATTTGAGCTGA 58.046 40.909 0.00 0.00 32.27 4.26
8 9 4.707030 TTGTGCCTTCATATTTGAGCTG 57.293 40.909 0.00 0.00 32.27 4.24
9 10 6.040166 CCTTATTGTGCCTTCATATTTGAGCT 59.960 38.462 0.00 0.00 32.27 4.09
10 11 6.211515 CCTTATTGTGCCTTCATATTTGAGC 58.788 40.000 0.00 0.00 32.27 4.26
11 12 6.183360 TGCCTTATTGTGCCTTCATATTTGAG 60.183 38.462 0.00 0.00 32.27 3.02
12 13 5.655974 TGCCTTATTGTGCCTTCATATTTGA 59.344 36.000 0.00 0.00 0.00 2.69
13 14 5.904941 TGCCTTATTGTGCCTTCATATTTG 58.095 37.500 0.00 0.00 0.00 2.32
14 15 5.893255 TCTGCCTTATTGTGCCTTCATATTT 59.107 36.000 0.00 0.00 0.00 1.40
15 16 5.448654 TCTGCCTTATTGTGCCTTCATATT 58.551 37.500 0.00 0.00 0.00 1.28
16 17 5.052693 TCTGCCTTATTGTGCCTTCATAT 57.947 39.130 0.00 0.00 0.00 1.78
17 18 4.502105 TCTGCCTTATTGTGCCTTCATA 57.498 40.909 0.00 0.00 0.00 2.15
18 19 3.370840 TCTGCCTTATTGTGCCTTCAT 57.629 42.857 0.00 0.00 0.00 2.57
19 20 2.877097 TCTGCCTTATTGTGCCTTCA 57.123 45.000 0.00 0.00 0.00 3.02
20 21 2.424956 CCTTCTGCCTTATTGTGCCTTC 59.575 50.000 0.00 0.00 0.00 3.46
21 22 2.041620 TCCTTCTGCCTTATTGTGCCTT 59.958 45.455 0.00 0.00 0.00 4.35
22 23 1.635487 TCCTTCTGCCTTATTGTGCCT 59.365 47.619 0.00 0.00 0.00 4.75
23 24 2.128771 TCCTTCTGCCTTATTGTGCC 57.871 50.000 0.00 0.00 0.00 5.01
24 25 2.164422 GGTTCCTTCTGCCTTATTGTGC 59.836 50.000 0.00 0.00 0.00 4.57
25 26 2.755103 GGGTTCCTTCTGCCTTATTGTG 59.245 50.000 0.00 0.00 0.00 3.33
26 27 2.378547 TGGGTTCCTTCTGCCTTATTGT 59.621 45.455 0.00 0.00 0.00 2.71
27 28 3.085952 TGGGTTCCTTCTGCCTTATTG 57.914 47.619 0.00 0.00 0.00 1.90
28 29 3.825908 TTGGGTTCCTTCTGCCTTATT 57.174 42.857 0.00 0.00 0.00 1.40
29 30 3.825908 TTTGGGTTCCTTCTGCCTTAT 57.174 42.857 0.00 0.00 0.00 1.73
30 31 3.496331 CTTTTGGGTTCCTTCTGCCTTA 58.504 45.455 0.00 0.00 0.00 2.69
31 32 2.319844 CTTTTGGGTTCCTTCTGCCTT 58.680 47.619 0.00 0.00 0.00 4.35
32 33 2.001076 CTTTTGGGTTCCTTCTGCCT 57.999 50.000 0.00 0.00 0.00 4.75
33 34 0.318441 GCTTTTGGGTTCCTTCTGCC 59.682 55.000 0.00 0.00 0.00 4.85
34 35 1.332195 AGCTTTTGGGTTCCTTCTGC 58.668 50.000 0.00 0.00 0.00 4.26
35 36 4.141959 TGAAAAGCTTTTGGGTTCCTTCTG 60.142 41.667 28.42 0.00 34.22 3.02
36 37 4.030216 TGAAAAGCTTTTGGGTTCCTTCT 58.970 39.130 28.42 0.00 34.22 2.85
37 38 4.141937 ACTGAAAAGCTTTTGGGTTCCTTC 60.142 41.667 28.42 11.49 34.22 3.46
38 39 3.774766 ACTGAAAAGCTTTTGGGTTCCTT 59.225 39.130 28.42 1.13 34.22 3.36
39 40 3.374764 ACTGAAAAGCTTTTGGGTTCCT 58.625 40.909 28.42 1.94 34.22 3.36
40 41 3.717707 GACTGAAAAGCTTTTGGGTTCC 58.282 45.455 28.42 13.32 34.22 3.62
41 42 3.372060 CGACTGAAAAGCTTTTGGGTTC 58.628 45.455 28.42 14.33 34.22 3.62
42 43 2.481276 GCGACTGAAAAGCTTTTGGGTT 60.481 45.455 28.42 10.03 37.22 4.11
43 44 1.067060 GCGACTGAAAAGCTTTTGGGT 59.933 47.619 28.42 23.30 0.00 4.51
44 45 1.602920 GGCGACTGAAAAGCTTTTGGG 60.603 52.381 28.42 20.59 0.00 4.12
45 46 1.338020 AGGCGACTGAAAAGCTTTTGG 59.662 47.619 28.42 20.91 41.13 3.28
46 47 2.781945 AGGCGACTGAAAAGCTTTTG 57.218 45.000 28.42 17.11 41.13 2.44
47 48 2.552743 GGTAGGCGACTGAAAAGCTTTT 59.447 45.455 24.08 24.08 43.88 2.27
48 49 2.152016 GGTAGGCGACTGAAAAGCTTT 58.848 47.619 5.69 5.69 43.88 3.51
49 50 1.071699 TGGTAGGCGACTGAAAAGCTT 59.928 47.619 0.00 0.00 43.88 3.74
50 51 0.685097 TGGTAGGCGACTGAAAAGCT 59.315 50.000 0.00 0.00 43.88 3.74
51 52 1.398390 CATGGTAGGCGACTGAAAAGC 59.602 52.381 0.00 0.00 43.88 3.51
52 53 2.673368 GTCATGGTAGGCGACTGAAAAG 59.327 50.000 0.00 0.00 43.88 2.27
53 54 2.614481 GGTCATGGTAGGCGACTGAAAA 60.614 50.000 0.00 0.00 43.88 2.29
54 55 1.066430 GGTCATGGTAGGCGACTGAAA 60.066 52.381 0.00 0.00 43.88 2.69
55 56 0.535335 GGTCATGGTAGGCGACTGAA 59.465 55.000 0.00 0.00 43.88 3.02
56 57 1.327690 GGGTCATGGTAGGCGACTGA 61.328 60.000 0.00 0.00 43.88 3.41
57 58 1.144057 GGGTCATGGTAGGCGACTG 59.856 63.158 0.00 0.00 43.88 3.51
59 60 1.153429 GTGGGTCATGGTAGGCGAC 60.153 63.158 0.00 0.00 0.00 5.19
60 61 1.305802 AGTGGGTCATGGTAGGCGA 60.306 57.895 0.00 0.00 0.00 5.54
61 62 1.153369 CAGTGGGTCATGGTAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
62 63 0.179000 CTCAGTGGGTCATGGTAGGC 59.821 60.000 0.00 0.00 0.00 3.93
63 64 0.833287 CCTCAGTGGGTCATGGTAGG 59.167 60.000 0.00 0.00 0.00 3.18
64 65 0.179000 GCCTCAGTGGGTCATGGTAG 59.821 60.000 0.00 0.00 36.00 3.18
65 66 1.271840 GGCCTCAGTGGGTCATGGTA 61.272 60.000 0.00 0.00 36.00 3.25
66 67 2.606587 GGCCTCAGTGGGTCATGGT 61.607 63.158 0.00 0.00 36.00 3.55
67 68 2.273449 GGCCTCAGTGGGTCATGG 59.727 66.667 0.00 0.00 36.00 3.66
68 69 2.273449 GGGCCTCAGTGGGTCATG 59.727 66.667 0.84 0.00 36.00 3.07
69 70 2.204136 TGGGCCTCAGTGGGTCAT 60.204 61.111 4.53 0.00 36.00 3.06
70 71 3.249189 GTGGGCCTCAGTGGGTCA 61.249 66.667 4.53 0.00 36.00 4.02
71 72 2.930562 AGTGGGCCTCAGTGGGTC 60.931 66.667 4.53 0.00 36.00 4.46
72 73 3.252284 CAGTGGGCCTCAGTGGGT 61.252 66.667 17.01 0.00 41.82 4.51
73 74 2.930019 TCAGTGGGCCTCAGTGGG 60.930 66.667 21.77 5.15 44.76 4.61
74 75 2.667418 CTCAGTGGGCCTCAGTGG 59.333 66.667 21.77 12.82 44.76 4.00
75 76 1.915266 TCCTCAGTGGGCCTCAGTG 60.915 63.158 18.14 18.14 45.74 3.66
76 77 1.915769 GTCCTCAGTGGGCCTCAGT 60.916 63.158 4.53 0.00 33.37 3.41
77 78 1.483595 TTGTCCTCAGTGGGCCTCAG 61.484 60.000 4.53 0.00 40.46 3.35
78 79 1.059584 TTTGTCCTCAGTGGGCCTCA 61.060 55.000 4.53 0.00 40.46 3.86
79 80 0.110486 TTTTGTCCTCAGTGGGCCTC 59.890 55.000 4.53 0.00 40.46 4.70
80 81 0.111253 CTTTTGTCCTCAGTGGGCCT 59.889 55.000 4.53 0.00 40.46 5.19
81 82 1.527433 GCTTTTGTCCTCAGTGGGCC 61.527 60.000 0.00 0.00 40.46 5.80
82 83 0.823356 TGCTTTTGTCCTCAGTGGGC 60.823 55.000 0.00 0.00 41.87 5.36
83 84 1.815003 GATGCTTTTGTCCTCAGTGGG 59.185 52.381 0.00 0.00 36.20 4.61
84 85 1.815003 GGATGCTTTTGTCCTCAGTGG 59.185 52.381 0.00 0.00 37.10 4.00
85 86 2.507484 TGGATGCTTTTGTCCTCAGTG 58.493 47.619 0.00 0.00 35.49 3.66
86 87 2.957402 TGGATGCTTTTGTCCTCAGT 57.043 45.000 0.00 0.00 35.49 3.41
87 88 3.087031 ACATGGATGCTTTTGTCCTCAG 58.913 45.455 0.00 0.00 35.49 3.35
88 89 2.821378 CACATGGATGCTTTTGTCCTCA 59.179 45.455 0.00 0.00 35.49 3.86
89 90 2.416431 GCACATGGATGCTTTTGTCCTC 60.416 50.000 0.00 0.00 42.62 3.71
90 91 1.547372 GCACATGGATGCTTTTGTCCT 59.453 47.619 0.00 0.00 42.62 3.85
91 92 1.273048 TGCACATGGATGCTTTTGTCC 59.727 47.619 9.44 0.00 46.28 4.02
92 93 2.029649 ACTGCACATGGATGCTTTTGTC 60.030 45.455 9.44 0.00 46.28 3.18
93 94 1.965643 ACTGCACATGGATGCTTTTGT 59.034 42.857 9.44 1.87 46.28 2.83
94 95 2.734606 CAACTGCACATGGATGCTTTTG 59.265 45.455 9.44 8.35 46.28 2.44
95 96 2.868839 GCAACTGCACATGGATGCTTTT 60.869 45.455 9.44 0.79 46.28 2.27
96 97 1.337447 GCAACTGCACATGGATGCTTT 60.337 47.619 9.44 1.10 46.28 3.51
97 98 0.245539 GCAACTGCACATGGATGCTT 59.754 50.000 9.44 0.00 46.28 3.91
98 99 0.611062 AGCAACTGCACATGGATGCT 60.611 50.000 9.44 3.06 46.28 3.79
99 100 0.179145 GAGCAACTGCACATGGATGC 60.179 55.000 4.22 0.00 46.32 3.91
100 101 0.098200 CGAGCAACTGCACATGGATG 59.902 55.000 4.22 0.00 45.16 3.51
101 102 0.036105 TCGAGCAACTGCACATGGAT 60.036 50.000 4.22 0.00 45.16 3.41
102 103 0.036105 ATCGAGCAACTGCACATGGA 60.036 50.000 4.22 0.00 45.16 3.41
103 104 0.806868 AATCGAGCAACTGCACATGG 59.193 50.000 4.22 0.00 45.16 3.66
104 105 2.931969 TCTAATCGAGCAACTGCACATG 59.068 45.455 4.22 0.00 45.16 3.21
105 106 3.193263 CTCTAATCGAGCAACTGCACAT 58.807 45.455 4.22 0.00 45.16 3.21
106 107 2.029020 ACTCTAATCGAGCAACTGCACA 60.029 45.455 4.22 0.00 43.85 4.57
107 108 2.611518 ACTCTAATCGAGCAACTGCAC 58.388 47.619 4.22 0.00 43.85 4.57
108 109 4.450082 TTACTCTAATCGAGCAACTGCA 57.550 40.909 4.22 0.00 43.85 4.41
109 110 4.033014 GGTTTACTCTAATCGAGCAACTGC 59.967 45.833 0.00 0.00 43.85 4.40
110 111 5.168569 TGGTTTACTCTAATCGAGCAACTG 58.831 41.667 0.00 0.00 43.85 3.16
111 112 5.401531 TGGTTTACTCTAATCGAGCAACT 57.598 39.130 0.00 0.00 43.85 3.16
112 113 6.367969 TCTTTGGTTTACTCTAATCGAGCAAC 59.632 38.462 0.00 0.00 43.85 4.17
113 114 6.460781 TCTTTGGTTTACTCTAATCGAGCAA 58.539 36.000 0.00 0.00 43.85 3.91
114 115 6.032956 TCTTTGGTTTACTCTAATCGAGCA 57.967 37.500 0.00 0.00 43.85 4.26
115 116 5.520649 CCTCTTTGGTTTACTCTAATCGAGC 59.479 44.000 0.00 0.00 43.85 5.03
116 117 5.520649 GCCTCTTTGGTTTACTCTAATCGAG 59.479 44.000 0.00 0.00 40.97 4.04
117 118 5.416947 GCCTCTTTGGTTTACTCTAATCGA 58.583 41.667 0.00 0.00 38.35 3.59
118 119 4.571176 GGCCTCTTTGGTTTACTCTAATCG 59.429 45.833 0.00 0.00 38.35 3.34
119 120 5.746284 AGGCCTCTTTGGTTTACTCTAATC 58.254 41.667 0.00 0.00 38.35 1.75
120 121 5.780958 AGGCCTCTTTGGTTTACTCTAAT 57.219 39.130 0.00 0.00 38.35 1.73
121 122 5.309806 AGAAGGCCTCTTTGGTTTACTCTAA 59.690 40.000 5.23 0.00 38.35 2.10
122 123 4.844655 AGAAGGCCTCTTTGGTTTACTCTA 59.155 41.667 5.23 0.00 38.35 2.43
123 124 3.653352 AGAAGGCCTCTTTGGTTTACTCT 59.347 43.478 5.23 0.00 38.35 3.24
124 125 3.753797 CAGAAGGCCTCTTTGGTTTACTC 59.246 47.826 5.23 0.00 38.35 2.59
125 126 3.394606 TCAGAAGGCCTCTTTGGTTTACT 59.605 43.478 5.23 0.00 38.35 2.24
126 127 3.751518 TCAGAAGGCCTCTTTGGTTTAC 58.248 45.455 5.23 0.00 38.35 2.01
127 128 3.810743 GCTCAGAAGGCCTCTTTGGTTTA 60.811 47.826 5.23 0.00 38.35 2.01
128 129 2.868899 CTCAGAAGGCCTCTTTGGTTT 58.131 47.619 5.23 0.00 38.35 3.27
129 130 1.546548 GCTCAGAAGGCCTCTTTGGTT 60.547 52.381 5.23 0.00 38.35 3.67
130 131 0.037447 GCTCAGAAGGCCTCTTTGGT 59.963 55.000 5.23 0.00 38.35 3.67
131 132 0.037303 TGCTCAGAAGGCCTCTTTGG 59.963 55.000 5.23 0.00 39.35 3.28
132 133 1.163554 GTGCTCAGAAGGCCTCTTTG 58.836 55.000 5.23 5.12 32.52 2.77
133 134 1.063183 AGTGCTCAGAAGGCCTCTTT 58.937 50.000 5.23 0.00 32.52 2.52
134 135 1.063183 AAGTGCTCAGAAGGCCTCTT 58.937 50.000 5.23 0.00 35.62 2.85
135 136 0.324285 CAAGTGCTCAGAAGGCCTCT 59.676 55.000 5.23 1.59 33.23 3.69
136 137 1.304509 GCAAGTGCTCAGAAGGCCTC 61.305 60.000 5.23 0.00 38.21 4.70
137 138 1.303155 GCAAGTGCTCAGAAGGCCT 60.303 57.895 0.00 0.00 38.21 5.19
138 139 3.272031 GCAAGTGCTCAGAAGGCC 58.728 61.111 0.00 0.00 38.21 5.19
148 149 2.064014 GAGCAATCCAAAAGCAAGTGC 58.936 47.619 0.00 0.00 42.49 4.40
149 150 2.036217 TGGAGCAATCCAAAAGCAAGTG 59.964 45.455 0.00 0.00 36.74 3.16
150 151 2.036346 GTGGAGCAATCCAAAAGCAAGT 59.964 45.455 0.00 0.00 42.10 3.16
151 152 2.036217 TGTGGAGCAATCCAAAAGCAAG 59.964 45.455 0.00 0.00 42.10 4.01
152 153 2.037901 TGTGGAGCAATCCAAAAGCAA 58.962 42.857 0.00 0.00 42.10 3.91
153 154 1.702182 TGTGGAGCAATCCAAAAGCA 58.298 45.000 0.00 0.00 42.10 3.91
154 155 4.660789 ATATGTGGAGCAATCCAAAAGC 57.339 40.909 0.00 0.00 42.10 3.51
155 156 7.514784 TGATATATGTGGAGCAATCCAAAAG 57.485 36.000 0.00 0.00 42.10 2.27
156 157 7.894753 TTGATATATGTGGAGCAATCCAAAA 57.105 32.000 0.00 0.00 42.10 2.44
157 158 7.524202 GCATTGATATATGTGGAGCAATCCAAA 60.524 37.037 0.00 0.00 42.10 3.28
158 159 6.071784 GCATTGATATATGTGGAGCAATCCAA 60.072 38.462 0.00 0.00 42.10 3.53
159 160 5.416639 GCATTGATATATGTGGAGCAATCCA 59.583 40.000 0.00 0.00 37.46 3.41
160 161 5.163581 GGCATTGATATATGTGGAGCAATCC 60.164 44.000 0.00 0.00 0.00 3.01
161 162 5.416639 TGGCATTGATATATGTGGAGCAATC 59.583 40.000 0.00 0.00 0.00 2.67
162 163 5.326900 TGGCATTGATATATGTGGAGCAAT 58.673 37.500 0.00 0.00 0.00 3.56
163 164 4.727677 TGGCATTGATATATGTGGAGCAA 58.272 39.130 0.00 0.00 0.00 3.91
164 165 4.370094 TGGCATTGATATATGTGGAGCA 57.630 40.909 0.00 0.00 0.00 4.26
165 166 5.882000 TGTATGGCATTGATATATGTGGAGC 59.118 40.000 4.78 0.00 0.00 4.70
166 167 9.617523 TTATGTATGGCATTGATATATGTGGAG 57.382 33.333 4.78 0.00 38.94 3.86
167 168 9.972106 TTTATGTATGGCATTGATATATGTGGA 57.028 29.630 4.78 0.00 38.94 4.02
177 178 8.797438 TGTTTGTACTTTTATGTATGGCATTGA 58.203 29.630 4.78 0.00 38.94 2.57
207 208 3.119291 CGATGACACAGCAGTTAGATCC 58.881 50.000 0.00 0.00 0.00 3.36
229 230 2.264109 ACTTGACAGCGACATCTACG 57.736 50.000 0.00 0.00 0.00 3.51
238 239 0.040958 GGACTTGCAACTTGACAGCG 60.041 55.000 0.00 0.00 0.00 5.18
280 282 8.429237 TGGATGGTGGTGAAACTAAAATTATT 57.571 30.769 0.00 0.00 36.74 1.40
287 289 4.447138 AACTGGATGGTGGTGAAACTAA 57.553 40.909 0.00 0.00 36.74 2.24
295 297 0.478072 TCAGCAAACTGGATGGTGGT 59.522 50.000 12.17 0.00 44.30 4.16
324 326 2.862536 CAGTGACATAGCTGATTCCGTG 59.137 50.000 0.00 0.00 34.87 4.94
328 330 3.129871 GGAGCAGTGACATAGCTGATTC 58.870 50.000 9.04 0.00 39.02 2.52
350 352 1.336702 ACGAGCAAGCAGAAGTCAGAG 60.337 52.381 0.00 0.00 0.00 3.35
368 373 2.496470 ACTTCCTTGGCTTCTAGGTACG 59.504 50.000 0.00 0.00 35.39 3.67
373 378 2.079925 GTGCACTTCCTTGGCTTCTAG 58.920 52.381 10.32 0.00 0.00 2.43
377 382 0.538287 GGAGTGCACTTCCTTGGCTT 60.538 55.000 22.65 0.00 0.00 4.35
385 390 2.783135 TGGATCTTTGGAGTGCACTTC 58.217 47.619 22.65 20.74 0.00 3.01
390 395 1.909700 TGGTTGGATCTTTGGAGTGC 58.090 50.000 0.00 0.00 0.00 4.40
393 398 2.426024 CAGCATGGTTGGATCTTTGGAG 59.574 50.000 0.00 0.00 0.00 3.86
402 407 0.178995 TTCTGCACAGCATGGTTGGA 60.179 50.000 0.00 0.00 43.62 3.53
403 408 0.675083 TTTCTGCACAGCATGGTTGG 59.325 50.000 0.00 0.00 43.62 3.77
408 418 3.064207 AGCAAATTTTCTGCACAGCATG 58.936 40.909 3.58 0.00 42.48 4.06
419 429 7.647907 ATGTGATGTTTCTGAGCAAATTTTC 57.352 32.000 0.00 0.00 0.00 2.29
420 430 7.711772 TCAATGTGATGTTTCTGAGCAAATTTT 59.288 29.630 0.00 0.00 0.00 1.82
421 431 7.211573 TCAATGTGATGTTTCTGAGCAAATTT 58.788 30.769 0.00 0.00 0.00 1.82
422 432 6.751157 TCAATGTGATGTTTCTGAGCAAATT 58.249 32.000 0.00 0.00 0.00 1.82
423 433 6.335471 TCAATGTGATGTTTCTGAGCAAAT 57.665 33.333 0.00 0.00 0.00 2.32
424 434 5.771153 TCAATGTGATGTTTCTGAGCAAA 57.229 34.783 0.00 0.00 0.00 3.68
425 435 5.705902 CATCAATGTGATGTTTCTGAGCAA 58.294 37.500 9.60 0.00 46.80 3.91
426 436 5.305139 CATCAATGTGATGTTTCTGAGCA 57.695 39.130 9.60 0.00 46.80 4.26
475 671 1.151677 TGGCCCCAGGACTAAACCT 60.152 57.895 0.00 0.00 41.43 3.50
477 673 1.376812 CGTGGCCCCAGGACTAAAC 60.377 63.158 0.00 0.00 34.13 2.01
478 674 1.844289 ACGTGGCCCCAGGACTAAA 60.844 57.895 13.43 0.00 35.94 1.85
519 725 5.238432 TGGTTCAGCAACATTAAGTACACAG 59.762 40.000 0.00 0.00 33.70 3.66
522 728 6.701145 TTTGGTTCAGCAACATTAAGTACA 57.299 33.333 0.00 0.00 33.70 2.90
523 729 6.143919 GCTTTTGGTTCAGCAACATTAAGTAC 59.856 38.462 0.00 0.00 35.95 2.73
532 738 2.869233 TCAGCTTTTGGTTCAGCAAC 57.131 45.000 0.00 0.00 38.61 4.17
536 742 5.443185 TGAAGATTCAGCTTTTGGTTCAG 57.557 39.130 0.00 0.00 32.50 3.02
580 787 4.897509 ATCATGTCCACTCTTGAGAACA 57.102 40.909 4.49 6.26 0.00 3.18
590 797 3.560025 GGTGGTGAAGAATCATGTCCACT 60.560 47.826 13.47 0.00 44.11 4.00
597 804 4.275810 CCAAGATGGTGGTGAAGAATCAT 58.724 43.478 0.00 0.00 33.27 2.45
646 855 9.605275 CACTTATACCATATTATATGCTGCTGT 57.395 33.333 6.69 2.31 0.00 4.40
647 856 9.822185 TCACTTATACCATATTATATGCTGCTG 57.178 33.333 6.69 0.00 0.00 4.41
667 876 9.851686 AAGTTCTCCATATGCATATTTCACTTA 57.148 29.630 16.71 0.00 0.00 2.24
668 877 8.627403 CAAGTTCTCCATATGCATATTTCACTT 58.373 33.333 16.71 15.52 0.00 3.16
716 926 8.786826 TGGTAAGACTTAGTGTGGATATTTTG 57.213 34.615 0.00 0.00 0.00 2.44
720 930 8.147244 AGTTTGGTAAGACTTAGTGTGGATAT 57.853 34.615 0.00 0.00 0.00 1.63
754 964 4.507710 TCAAGCGCAACTTTGATATCTCT 58.492 39.130 11.47 0.00 36.04 3.10
755 965 4.864916 TCAAGCGCAACTTTGATATCTC 57.135 40.909 11.47 0.00 36.04 2.75
761 971 1.748493 AGGTTTCAAGCGCAACTTTGA 59.252 42.857 11.47 8.09 36.04 2.69
766 976 3.552604 TGATTAGGTTTCAAGCGCAAC 57.447 42.857 11.47 4.75 0.00 4.17
770 980 5.551760 ATGAGTTGATTAGGTTTCAAGCG 57.448 39.130 0.00 0.00 33.95 4.68
771 981 6.969473 GCTTATGAGTTGATTAGGTTTCAAGC 59.031 38.462 0.00 0.00 33.95 4.01
779 989 7.151308 AGAGAATCGCTTATGAGTTGATTAGG 58.849 38.462 6.96 0.00 42.67 2.69
788 998 2.805099 GGCCAAGAGAATCGCTTATGAG 59.195 50.000 0.00 0.00 42.67 2.90
789 999 2.170397 TGGCCAAGAGAATCGCTTATGA 59.830 45.455 0.61 0.00 42.67 2.15
801 1011 1.310933 GGCAGTCATGTGGCCAAGAG 61.311 60.000 7.24 0.00 46.92 2.85
803 1013 3.281240 GGCAGTCATGTGGCCAAG 58.719 61.111 7.24 0.00 46.92 3.61
807 1034 2.099756 GGAAAATAGGCAGTCATGTGGC 59.900 50.000 1.98 1.98 43.28 5.01
821 1048 7.835181 ACTATATTCACGGGGTTTTGGAAAATA 59.165 33.333 0.00 0.00 0.00 1.40
823 1050 6.011481 ACTATATTCACGGGGTTTTGGAAAA 58.989 36.000 0.00 0.00 0.00 2.29
834 1078 7.043391 CGACATGCATATTACTATATTCACGGG 60.043 40.741 0.00 0.00 0.00 5.28
860 1104 3.572255 CCTGTCCTCCAGACTAGAATAGC 59.428 52.174 0.00 0.00 46.46 2.97
861 1105 4.141135 TCCCTGTCCTCCAGACTAGAATAG 60.141 50.000 0.00 0.00 46.46 1.73
863 1107 2.587777 TCCCTGTCCTCCAGACTAGAAT 59.412 50.000 0.00 0.00 46.46 2.40
873 1117 1.280457 AGTCAATGTCCCTGTCCTCC 58.720 55.000 0.00 0.00 0.00 4.30
876 1120 2.814336 GTGAAAGTCAATGTCCCTGTCC 59.186 50.000 0.00 0.00 0.00 4.02
889 1133 4.825085 TGTATCTTGGGTTTGGTGAAAGTC 59.175 41.667 0.00 0.00 0.00 3.01
892 1136 4.582656 CACTGTATCTTGGGTTTGGTGAAA 59.417 41.667 0.00 0.00 0.00 2.69
895 1139 2.819608 CCACTGTATCTTGGGTTTGGTG 59.180 50.000 0.00 0.00 0.00 4.17
898 1142 2.489329 CAGCCACTGTATCTTGGGTTTG 59.511 50.000 0.00 0.00 41.77 2.93
917 1164 0.464036 TAATCTACACAGCCGGCCAG 59.536 55.000 26.15 19.53 0.00 4.85
922 1169 7.817641 TCTTATATCTGTAATCTACACAGCCG 58.182 38.462 0.00 0.00 42.58 5.52
954 1201 3.251972 GCTTGCTGAGAATATGCTTACCC 59.748 47.826 0.00 0.00 0.00 3.69
960 1207 1.674441 TGCTGCTTGCTGAGAATATGC 59.326 47.619 0.00 0.00 43.37 3.14
966 1213 1.302271 CTGGTGCTGCTTGCTGAGA 60.302 57.895 0.00 0.00 43.37 3.27
967 1214 2.979197 GCTGGTGCTGCTTGCTGAG 61.979 63.158 0.00 0.00 43.37 3.35
1004 1251 3.068881 CAACGGAGAGCTGGGGAA 58.931 61.111 0.00 0.00 0.00 3.97
1006 1253 3.710722 AGCAACGGAGAGCTGGGG 61.711 66.667 0.00 0.00 40.31 4.96
1038 1288 5.432885 TGGCTAAAACTGAAACTAAGCAC 57.567 39.130 0.00 0.00 0.00 4.40
1073 1323 3.200825 ACCAAGGATGTAGAGGGTGATTG 59.799 47.826 0.00 0.00 0.00 2.67
1095 1345 1.013596 CTGCGAAGGACACAACAACA 58.986 50.000 0.00 0.00 0.00 3.33
1263 1513 1.351076 TGAAGATCTCACTGTGCCCA 58.649 50.000 2.12 0.00 0.00 5.36
1404 1654 2.932614 GGAACAGAGACGATCAACATGG 59.067 50.000 0.00 0.00 0.00 3.66
1405 1655 3.854666 AGGAACAGAGACGATCAACATG 58.145 45.455 0.00 0.00 0.00 3.21
1406 1656 3.118956 GGAGGAACAGAGACGATCAACAT 60.119 47.826 0.00 0.00 0.00 2.71
1407 1657 2.231478 GGAGGAACAGAGACGATCAACA 59.769 50.000 0.00 0.00 0.00 3.33
1408 1658 2.494073 AGGAGGAACAGAGACGATCAAC 59.506 50.000 0.00 0.00 0.00 3.18
1409 1659 2.755655 GAGGAGGAACAGAGACGATCAA 59.244 50.000 0.00 0.00 0.00 2.57
1410 1660 2.025793 AGAGGAGGAACAGAGACGATCA 60.026 50.000 0.00 0.00 0.00 2.92
1411 1661 2.357637 CAGAGGAGGAACAGAGACGATC 59.642 54.545 0.00 0.00 0.00 3.69
1412 1662 2.374184 CAGAGGAGGAACAGAGACGAT 58.626 52.381 0.00 0.00 0.00 3.73
1413 1663 1.827681 CAGAGGAGGAACAGAGACGA 58.172 55.000 0.00 0.00 0.00 4.20
1414 1664 0.172352 GCAGAGGAGGAACAGAGACG 59.828 60.000 0.00 0.00 0.00 4.18
1415 1665 0.534873 GGCAGAGGAGGAACAGAGAC 59.465 60.000 0.00 0.00 0.00 3.36
1416 1666 0.411452 AGGCAGAGGAGGAACAGAGA 59.589 55.000 0.00 0.00 0.00 3.10
1417 1667 1.274712 AAGGCAGAGGAGGAACAGAG 58.725 55.000 0.00 0.00 0.00 3.35
1418 1668 1.625818 GAAAGGCAGAGGAGGAACAGA 59.374 52.381 0.00 0.00 0.00 3.41
1419 1669 1.627834 AGAAAGGCAGAGGAGGAACAG 59.372 52.381 0.00 0.00 0.00 3.16
1420 1670 1.734655 AGAAAGGCAGAGGAGGAACA 58.265 50.000 0.00 0.00 0.00 3.18
1421 1671 2.869101 AAGAAAGGCAGAGGAGGAAC 57.131 50.000 0.00 0.00 0.00 3.62
1422 1672 4.536090 TCATTAAGAAAGGCAGAGGAGGAA 59.464 41.667 0.00 0.00 0.00 3.36
1423 1673 4.104086 TCATTAAGAAAGGCAGAGGAGGA 58.896 43.478 0.00 0.00 0.00 3.71
1424 1674 4.494091 TCATTAAGAAAGGCAGAGGAGG 57.506 45.455 0.00 0.00 0.00 4.30
1425 1675 8.688747 ATTAATCATTAAGAAAGGCAGAGGAG 57.311 34.615 0.00 0.00 0.00 3.69
1443 1693 9.476202 CGATCAACATGGACTAGTTATTAATCA 57.524 33.333 0.00 0.00 0.00 2.57
1444 1694 9.477484 ACGATCAACATGGACTAGTTATTAATC 57.523 33.333 0.00 0.00 0.00 1.75
1445 1695 9.477484 GACGATCAACATGGACTAGTTATTAAT 57.523 33.333 0.00 0.00 0.00 1.40
1446 1696 8.692710 AGACGATCAACATGGACTAGTTATTAA 58.307 33.333 0.00 0.00 0.00 1.40
1447 1697 8.234136 AGACGATCAACATGGACTAGTTATTA 57.766 34.615 0.00 0.00 0.00 0.98
1448 1698 7.068839 AGAGACGATCAACATGGACTAGTTATT 59.931 37.037 0.00 0.00 0.00 1.40
1449 1699 6.547880 AGAGACGATCAACATGGACTAGTTAT 59.452 38.462 0.00 0.00 0.00 1.89
1450 1700 5.886474 AGAGACGATCAACATGGACTAGTTA 59.114 40.000 0.00 0.00 0.00 2.24
1451 1701 4.707448 AGAGACGATCAACATGGACTAGTT 59.293 41.667 0.00 0.00 0.00 2.24
1452 1702 4.097135 CAGAGACGATCAACATGGACTAGT 59.903 45.833 0.00 0.00 0.00 2.57
1453 1703 4.097135 ACAGAGACGATCAACATGGACTAG 59.903 45.833 0.00 0.00 0.00 2.57
1454 1704 4.017126 ACAGAGACGATCAACATGGACTA 58.983 43.478 0.00 0.00 0.00 2.59
1455 1705 2.828520 ACAGAGACGATCAACATGGACT 59.171 45.455 0.00 0.00 0.00 3.85
1456 1706 3.238108 ACAGAGACGATCAACATGGAC 57.762 47.619 0.00 0.00 0.00 4.02
1457 1707 3.368427 GGAACAGAGACGATCAACATGGA 60.368 47.826 0.00 0.00 0.00 3.41
1556 1806 7.993101 AGTTTGACTTGATCATCCATTGTATG 58.007 34.615 0.00 0.00 37.11 2.39
1689 1939 6.147821 GCACTATGAGTAGATTGTGTGTGTTT 59.852 38.462 0.00 0.00 33.29 2.83
1690 1940 5.639506 GCACTATGAGTAGATTGTGTGTGTT 59.360 40.000 0.00 0.00 33.29 3.32
1691 1941 5.171476 GCACTATGAGTAGATTGTGTGTGT 58.829 41.667 0.00 0.00 33.29 3.72
1692 1942 5.170748 TGCACTATGAGTAGATTGTGTGTG 58.829 41.667 0.00 0.00 33.29 3.82
1693 1943 5.405935 TGCACTATGAGTAGATTGTGTGT 57.594 39.130 0.00 0.00 33.29 3.72
1694 1944 6.915544 ATTGCACTATGAGTAGATTGTGTG 57.084 37.500 0.00 0.00 33.29 3.82
1695 1945 7.492669 GTGTATTGCACTATGAGTAGATTGTGT 59.507 37.037 0.00 0.00 44.41 3.72
1696 1946 7.845483 GTGTATTGCACTATGAGTAGATTGTG 58.155 38.462 0.00 0.00 44.41 3.33
1707 1957 9.106396 GGAGATTGCTCTGTGTATTGCACTATG 62.106 44.444 6.45 0.00 41.89 2.23
1708 1958 7.183860 GGAGATTGCTCTGTGTATTGCACTAT 61.184 42.308 6.45 0.00 41.89 2.12
1709 1959 5.912467 GGAGATTGCTCTGTGTATTGCACTA 60.912 44.000 6.45 0.00 41.89 2.74
1710 1960 5.160194 GGAGATTGCTCTGTGTATTGCACT 61.160 45.833 6.45 0.00 41.89 4.40
1711 1961 3.064545 GGAGATTGCTCTGTGTATTGCAC 59.935 47.826 0.00 0.00 41.81 4.57
1712 1962 3.273434 GGAGATTGCTCTGTGTATTGCA 58.727 45.455 0.00 0.00 41.06 4.08
1713 1963 3.273434 TGGAGATTGCTCTGTGTATTGC 58.727 45.455 0.00 0.00 41.06 3.56
1714 1964 5.587443 TGAATGGAGATTGCTCTGTGTATTG 59.413 40.000 0.00 0.00 41.06 1.90
1715 1965 5.748402 TGAATGGAGATTGCTCTGTGTATT 58.252 37.500 0.00 0.00 41.06 1.89
1716 1966 5.129980 TCTGAATGGAGATTGCTCTGTGTAT 59.870 40.000 0.00 0.00 41.06 2.29
1717 1967 4.467438 TCTGAATGGAGATTGCTCTGTGTA 59.533 41.667 0.00 0.00 41.06 2.90
1718 1968 3.262660 TCTGAATGGAGATTGCTCTGTGT 59.737 43.478 0.00 0.00 41.06 3.72
1750 2027 5.765510 AGATTCAGGGCAATATGGTGTTAA 58.234 37.500 0.00 0.00 0.00 2.01
1756 2033 4.095483 GCGATTAGATTCAGGGCAATATGG 59.905 45.833 0.00 0.00 0.00 2.74
1808 2085 2.092914 AGCAACCCAACTAGCCTGTATC 60.093 50.000 0.00 0.00 0.00 2.24
1851 2128 8.201554 TGCAGTAACTATTCAACATGATCTTC 57.798 34.615 0.00 0.00 0.00 2.87
2116 2393 3.247173 CGTATGAAATCTTCTCTGCCAGC 59.753 47.826 0.00 0.00 0.00 4.85
2131 2408 2.094234 TCTGTTAGCTGCTGCGTATGAA 60.094 45.455 13.43 0.00 45.42 2.57
2153 2430 6.376018 GGAAGTACCTGCATGTTTATGGTAAA 59.624 38.462 0.00 0.00 35.39 2.01
2312 2611 5.077134 AGCTAGATTGAATTTGGGTTTGC 57.923 39.130 0.00 0.00 0.00 3.68
2421 2802 5.917462 AGCTTGTTCAAGCCACTTAATTTT 58.083 33.333 26.93 7.97 46.61 1.82
2469 2851 6.715264 AGAAATAGGAAGAACGAAACAACCAT 59.285 34.615 0.00 0.00 0.00 3.55
2699 3099 2.611292 GAGTTTGGCTTCTGATCCGATG 59.389 50.000 0.00 0.00 0.00 3.84
2816 3216 9.331282 AGCAAATTATAGCGAGATAAGAGTTTT 57.669 29.630 0.00 0.00 35.48 2.43
2824 3224 9.358872 CAGATTGTAGCAAATTATAGCGAGATA 57.641 33.333 0.00 0.00 35.48 1.98
2830 3230 9.817365 CATACACAGATTGTAGCAAATTATAGC 57.183 33.333 0.00 0.00 44.14 2.97
2881 3281 9.429359 CTCAAGTTATCTGTGTATTTGAGACTT 57.571 33.333 5.62 0.00 41.38 3.01
2946 3346 8.252417 CAGGATGTGTATTTGAAATGATTTGGA 58.748 33.333 0.00 0.00 0.00 3.53
3067 3467 4.407621 ACCGTATCCAGATGACCAACATTA 59.592 41.667 0.00 0.00 39.56 1.90
3087 3550 6.205784 TGTTTCTTGAATTTTTAGCTGACCG 58.794 36.000 0.00 0.00 0.00 4.79
3125 3588 3.070018 TGCAGCTTTCTCTACAGCTTTC 58.930 45.455 0.00 0.00 44.28 2.62
3137 3600 3.567164 ACAGCATGGTATATGCAGCTTTC 59.433 43.478 13.60 0.00 46.77 2.62
3168 3631 4.743644 GCATGCATCATAAAAGAGAAAGCC 59.256 41.667 14.21 0.00 0.00 4.35
3171 3634 6.762702 TCTGCATGCATCATAAAAGAGAAA 57.237 33.333 22.97 0.00 0.00 2.52
3648 4142 5.116882 CAGGGTATGCTTACTCTACAAACC 58.883 45.833 11.55 1.41 37.01 3.27
3775 4270 3.587506 ACAGCTACAATCCTACACCCTTT 59.412 43.478 0.00 0.00 0.00 3.11
3781 4276 5.897250 TCATTCCTACAGCTACAATCCTACA 59.103 40.000 0.00 0.00 0.00 2.74
3994 4496 3.684305 GCCATCCTGTAAAATTGCCAAAC 59.316 43.478 0.00 0.00 0.00 2.93
4466 5102 4.453819 GCAGTACTTTCTGAAAGCACATCT 59.546 41.667 26.81 16.51 42.27 2.90
4548 5192 5.904941 TGCTTGTGTTTTTGACATGAGAAT 58.095 33.333 0.00 0.00 41.10 2.40
4555 5199 6.862209 ACTATCTTTGCTTGTGTTTTTGACA 58.138 32.000 0.00 0.00 35.42 3.58
4720 5366 5.126067 TCTTCCAGTTTGAACCTGAAGAAG 58.874 41.667 16.74 8.98 40.27 2.85
4793 5439 4.590850 ACACAAAAAGATGAAGGCCTTC 57.409 40.909 34.48 34.48 39.91 3.46
4871 5517 7.394016 TGTTGGAGATTTACATATGACAGTGT 58.606 34.615 10.38 0.00 0.00 3.55
4941 5587 8.956426 CCCATGCTACTTAATTTGTTCTTCTTA 58.044 33.333 0.00 0.00 0.00 2.10
4943 5589 6.948309 ACCCATGCTACTTAATTTGTTCTTCT 59.052 34.615 0.00 0.00 0.00 2.85
4944 5590 7.158099 ACCCATGCTACTTAATTTGTTCTTC 57.842 36.000 0.00 0.00 0.00 2.87
4946 5592 8.644374 TTAACCCATGCTACTTAATTTGTTCT 57.356 30.769 0.00 0.00 0.00 3.01
4947 5593 9.301153 CATTAACCCATGCTACTTAATTTGTTC 57.699 33.333 0.00 0.00 0.00 3.18
4949 5595 7.398904 ACCATTAACCCATGCTACTTAATTTGT 59.601 33.333 0.00 0.00 0.00 2.83
4950 5596 7.781056 ACCATTAACCCATGCTACTTAATTTG 58.219 34.615 0.00 0.00 0.00 2.32
4951 5597 7.069455 GGACCATTAACCCATGCTACTTAATTT 59.931 37.037 0.00 0.00 0.00 1.82
4952 5598 6.549736 GGACCATTAACCCATGCTACTTAATT 59.450 38.462 0.00 0.00 0.00 1.40
4953 5599 6.068670 GGACCATTAACCCATGCTACTTAAT 58.931 40.000 0.00 0.00 0.00 1.40
4954 5600 5.192923 AGGACCATTAACCCATGCTACTTAA 59.807 40.000 0.00 0.00 0.00 1.85
4955 5601 4.724798 AGGACCATTAACCCATGCTACTTA 59.275 41.667 0.00 0.00 0.00 2.24
4966 5612 4.338400 GGTTCAGCAATAGGACCATTAACC 59.662 45.833 0.00 0.00 0.00 2.85
4970 5616 3.737559 TGGTTCAGCAATAGGACCATT 57.262 42.857 0.00 0.00 0.00 3.16
4974 5620 3.255642 TGCTTTTGGTTCAGCAATAGGAC 59.744 43.478 10.08 0.00 43.14 3.85
5004 5650 7.278724 TGGGAATTCTGGGACTAAGAAAATA 57.721 36.000 5.23 0.00 37.22 1.40
5014 5660 3.296854 GGGTAATTGGGAATTCTGGGAC 58.703 50.000 5.23 0.00 32.38 4.46
5036 5682 8.900781 CCCCAGAGCAATTATTATATCATTCTG 58.099 37.037 0.00 0.00 0.00 3.02
5057 5703 2.031120 TGTTCTGTTTTGCTTCCCCAG 58.969 47.619 0.00 0.00 0.00 4.45
5059 5705 2.803133 GCTTGTTCTGTTTTGCTTCCCC 60.803 50.000 0.00 0.00 0.00 4.81
5079 5725 3.347958 TGTTGTTTGATTCGAGGTTGC 57.652 42.857 0.00 0.00 0.00 4.17
5217 5863 4.143740 CTGGTCTCCAGCTTCCCT 57.856 61.111 2.77 0.00 45.13 4.20
5330 5976 3.243068 GGGTTAAGTGTGCTGTTCTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
5331 5977 2.949644 GGGTTAAGTGTGCTGTTCTTGT 59.050 45.455 0.00 0.00 0.00 3.16
5340 5986 4.023878 TGTTATTTCGTGGGTTAAGTGTGC 60.024 41.667 0.00 0.00 0.00 4.57
5345 5991 9.902196 ATTTACTTTGTTATTTCGTGGGTTAAG 57.098 29.630 0.00 0.00 0.00 1.85
5350 5996 7.590279 ACTCATTTACTTTGTTATTTCGTGGG 58.410 34.615 0.00 0.00 0.00 4.61
5421 6067 0.550914 TGTTGAGGCTCCACCAAAGT 59.449 50.000 15.36 0.00 43.14 2.66
5506 6152 4.389374 TGGATGAGAAGAAAAAGAAGCGT 58.611 39.130 0.00 0.00 0.00 5.07
5586 6232 2.863809 AGAAAACCTCCACATTCGCTT 58.136 42.857 0.00 0.00 0.00 4.68
5589 6235 4.215399 TGCTTAAGAAAACCTCCACATTCG 59.785 41.667 6.67 0.00 0.00 3.34
5626 6272 5.862924 TTGAACTAGTACAAATGCTCTGC 57.137 39.130 0.00 0.00 0.00 4.26
5627 6273 9.121517 CATTTTTGAACTAGTACAAATGCTCTG 57.878 33.333 0.00 0.00 36.21 3.35
5639 6285 9.769093 GTTAATCGCATACATTTTTGAACTAGT 57.231 29.630 0.00 0.00 0.00 2.57
5696 6342 4.682859 GCCTGGTGCAAATAAAATGCCATA 60.683 41.667 0.00 0.00 43.16 2.74
5757 6404 1.896660 GGTTTGCTTGGCTCGGACA 60.897 57.895 0.00 0.00 0.00 4.02
5758 6405 1.856265 CTGGTTTGCTTGGCTCGGAC 61.856 60.000 0.00 0.00 0.00 4.79
5797 6444 4.130118 GCAGAAAAGGAAGAAGTGAGTGA 58.870 43.478 0.00 0.00 0.00 3.41
5798 6445 4.133078 AGCAGAAAAGGAAGAAGTGAGTG 58.867 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.