Multiple sequence alignment - TraesCS7A01G063400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G063400 chr7A 100.000 2462 0 0 1 2462 31685648 31688109 0.000000e+00 4547.0
1 TraesCS7A01G063400 chr7A 82.827 1252 134 44 456 1656 31583579 31582358 0.000000e+00 1046.0
2 TraesCS7A01G063400 chr7A 88.483 712 73 7 1746 2454 31582243 31581538 0.000000e+00 852.0
3 TraesCS7A01G063400 chr7A 90.435 460 40 3 1 458 204898585 204898128 9.740000e-169 603.0
4 TraesCS7A01G063400 chr7A 89.760 459 38 6 1 456 393456402 393455950 1.640000e-161 579.0
5 TraesCS7A01G063400 chr7A 79.646 452 61 18 1034 1457 31693444 31693892 1.850000e-76 296.0
6 TraesCS7A01G063400 chr7D 82.067 1132 124 42 456 1566 31112800 31113873 0.000000e+00 893.0
7 TraesCS7A01G063400 chr7D 88.301 718 79 4 1746 2462 31114297 31115010 0.000000e+00 856.0
8 TraesCS7A01G063400 chr7D 79.288 309 56 7 1022 1323 31281440 31281747 2.480000e-50 209.0
9 TraesCS7A01G063400 chr7D 100.000 33 0 0 1389 1421 31281840 31281872 7.350000e-06 62.1
10 TraesCS7A01G063400 chr3A 90.889 461 38 3 1 458 413214187 413213728 1.250000e-172 616.0
11 TraesCS7A01G063400 chr3A 89.130 460 48 2 1 458 629799726 629800185 2.750000e-159 571.0
12 TraesCS7A01G063400 chr5A 90.435 460 41 3 1 458 311360128 311360586 9.740000e-169 603.0
13 TraesCS7A01G063400 chr5A 89.520 458 44 4 1 456 580960460 580960005 5.900000e-161 577.0
14 TraesCS7A01G063400 chr6A 89.871 464 35 7 1 458 85992650 85993107 9.810000e-164 586.0
15 TraesCS7A01G063400 chr6A 89.348 460 45 3 1 458 483752349 483751892 2.120000e-160 575.0
16 TraesCS7A01G063400 chr6A 87.500 72 9 0 1857 1928 596485916 596485987 1.570000e-12 84.2
17 TraesCS7A01G063400 chr4A 89.348 460 41 8 1 458 162724426 162724879 2.750000e-159 571.0
18 TraesCS7A01G063400 chr4A 76.364 495 75 24 1754 2244 34680014 34680470 6.850000e-56 228.0
19 TraesCS7A01G063400 chr4A 79.233 313 46 13 1014 1308 34677916 34678227 1.490000e-47 200.0
20 TraesCS7A01G063400 chr4A 91.026 78 7 0 1252 1329 696576847 696576924 3.350000e-19 106.0
21 TraesCS7A01G063400 chr5D 81.081 407 65 10 1056 1456 34063951 34064351 5.110000e-82 315.0
22 TraesCS7A01G063400 chr5D 77.826 230 29 11 1249 1457 24915438 24915666 3.320000e-24 122.0
23 TraesCS7A01G063400 chr4D 77.568 477 63 22 1013 1457 433365476 433365940 5.260000e-62 248.0
24 TraesCS7A01G063400 chr4D 76.113 494 77 25 1754 2244 433366406 433366861 1.150000e-53 220.0
25 TraesCS7A01G063400 chrUn 74.735 471 83 25 1786 2244 287417714 287418160 7.000000e-41 178.0
26 TraesCS7A01G063400 chrUn 74.735 471 83 25 1786 2244 295022186 295021740 7.000000e-41 178.0
27 TraesCS7A01G063400 chrUn 95.714 70 3 0 1388 1457 287417372 287417441 2.000000e-21 113.0
28 TraesCS7A01G063400 chrUn 95.714 70 3 0 1388 1457 295022528 295022459 2.000000e-21 113.0
29 TraesCS7A01G063400 chr6B 80.723 83 14 2 1815 1896 693300277 693300196 2.040000e-06 63.9
30 TraesCS7A01G063400 chr6D 94.595 37 2 0 1860 1896 455906304 455906268 9.510000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G063400 chr7A 31685648 31688109 2461 False 4547.0 4547 100.0000 1 2462 1 chr7A.!!$F1 2461
1 TraesCS7A01G063400 chr7A 31581538 31583579 2041 True 949.0 1046 85.6550 456 2454 2 chr7A.!!$R3 1998
2 TraesCS7A01G063400 chr7D 31112800 31115010 2210 False 874.5 893 85.1840 456 2462 2 chr7D.!!$F1 2006
3 TraesCS7A01G063400 chr4A 34677916 34680470 2554 False 214.0 228 77.7985 1014 2244 2 chr4A.!!$F3 1230
4 TraesCS7A01G063400 chr4D 433365476 433366861 1385 False 234.0 248 76.8405 1013 2244 2 chr4D.!!$F1 1231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.036388 TCGCGGAGAAATCCTTTGCT 60.036 50.0 6.13 0.0 0.00 3.91 F
369 370 0.106819 GGCCAGGCATCATGTCTTCT 60.107 55.0 15.19 0.0 23.66 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1446 0.036105 ACATGCTCTGGATGCGACAA 60.036 50.0 0.0 0.0 0.0 3.18 R
1969 3619 0.322456 TCTGGACCGGCAATTCTTGG 60.322 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.868522 AACACTCCAGAATCATGAAAATAAGA 57.131 30.769 0.00 0.00 0.00 2.10
27 28 8.868522 ACACTCCAGAATCATGAAAATAAGAA 57.131 30.769 0.00 0.00 0.00 2.52
28 29 8.954350 ACACTCCAGAATCATGAAAATAAGAAG 58.046 33.333 0.00 0.00 0.00 2.85
29 30 8.404000 CACTCCAGAATCATGAAAATAAGAAGG 58.596 37.037 0.00 0.00 0.00 3.46
30 31 8.112183 ACTCCAGAATCATGAAAATAAGAAGGT 58.888 33.333 0.00 0.00 0.00 3.50
31 32 9.618890 CTCCAGAATCATGAAAATAAGAAGGTA 57.381 33.333 0.00 0.00 0.00 3.08
32 33 9.396022 TCCAGAATCATGAAAATAAGAAGGTAC 57.604 33.333 0.00 0.00 0.00 3.34
33 34 8.338259 CCAGAATCATGAAAATAAGAAGGTACG 58.662 37.037 0.00 0.00 0.00 3.67
34 35 8.883731 CAGAATCATGAAAATAAGAAGGTACGT 58.116 33.333 0.00 0.00 0.00 3.57
35 36 9.099454 AGAATCATGAAAATAAGAAGGTACGTC 57.901 33.333 0.00 0.00 37.02 4.34
36 37 8.786826 AATCATGAAAATAAGAAGGTACGTCA 57.213 30.769 0.00 0.00 39.91 4.35
37 38 8.964476 ATCATGAAAATAAGAAGGTACGTCAT 57.036 30.769 0.00 0.00 39.91 3.06
39 40 9.309516 TCATGAAAATAAGAAGGTACGTCATAC 57.690 33.333 0.00 0.00 39.91 2.39
53 54 4.014847 CGTCATACGGTAAGTAAACGGA 57.985 45.455 0.00 0.00 41.14 4.69
54 55 3.786048 CGTCATACGGTAAGTAAACGGAC 59.214 47.826 0.00 0.00 41.14 4.79
55 56 4.437390 CGTCATACGGTAAGTAAACGGACT 60.437 45.833 0.00 0.00 41.14 3.85
56 57 5.030936 GTCATACGGTAAGTAAACGGACTC 58.969 45.833 0.00 0.00 39.04 3.36
57 58 4.096382 TCATACGGTAAGTAAACGGACTCC 59.904 45.833 0.00 0.00 39.04 3.85
58 59 2.418628 TACGGTAAGTAAACGGACTCCG 59.581 50.000 16.26 16.26 41.94 4.63
59 60 4.725839 TACGGTAAGTAAACGGACTCCGG 61.726 52.174 21.52 0.00 41.11 5.14
60 61 6.902088 TACGGTAAGTAAACGGACTCCGGA 62.902 50.000 21.52 2.93 41.11 5.14
128 129 9.559732 AATTTTGGAAATAAAGAAACTTCCAGG 57.440 29.630 2.90 0.00 46.00 4.45
129 130 7.906199 TTTGGAAATAAAGAAACTTCCAGGA 57.094 32.000 2.90 0.00 46.00 3.86
130 131 7.906199 TTGGAAATAAAGAAACTTCCAGGAA 57.094 32.000 0.71 0.71 46.00 3.36
131 132 7.524717 TGGAAATAAAGAAACTTCCAGGAAG 57.475 36.000 25.64 25.64 41.83 3.46
132 133 6.015434 TGGAAATAAAGAAACTTCCAGGAAGC 60.015 38.462 26.94 12.45 42.79 3.86
133 134 5.629079 AATAAAGAAACTTCCAGGAAGCG 57.371 39.130 26.94 7.97 42.79 4.68
134 135 2.640316 AAGAAACTTCCAGGAAGCGT 57.360 45.000 26.94 15.97 42.79 5.07
135 136 2.171341 AGAAACTTCCAGGAAGCGTC 57.829 50.000 26.94 22.51 42.79 5.19
136 137 1.157585 GAAACTTCCAGGAAGCGTCC 58.842 55.000 26.94 11.15 42.79 4.79
137 138 0.250770 AAACTTCCAGGAAGCGTCCC 60.251 55.000 26.94 0.00 46.30 4.46
138 139 1.128188 AACTTCCAGGAAGCGTCCCT 61.128 55.000 26.94 5.55 46.30 4.20
139 140 1.078848 CTTCCAGGAAGCGTCCCTG 60.079 63.158 16.65 14.13 46.30 4.45
142 143 2.046892 CAGGAAGCGTCCCTGGTG 60.047 66.667 15.64 3.08 46.30 4.17
143 144 3.322466 AGGAAGCGTCCCTGGTGG 61.322 66.667 15.64 0.00 46.30 4.61
154 155 3.594453 CCTGGTGGGCACAATACAT 57.406 52.632 0.00 0.00 0.00 2.29
155 156 1.392589 CCTGGTGGGCACAATACATC 58.607 55.000 0.00 0.00 0.00 3.06
156 157 1.340893 CCTGGTGGGCACAATACATCA 60.341 52.381 0.00 0.00 0.00 3.07
157 158 2.658285 CTGGTGGGCACAATACATCAT 58.342 47.619 0.00 0.00 0.00 2.45
158 159 2.359848 CTGGTGGGCACAATACATCATG 59.640 50.000 0.00 0.00 0.00 3.07
159 160 2.291475 TGGTGGGCACAATACATCATGT 60.291 45.455 0.00 0.00 0.00 3.21
160 161 2.760092 GGTGGGCACAATACATCATGTT 59.240 45.455 0.00 0.00 0.00 2.71
161 162 3.429272 GGTGGGCACAATACATCATGTTG 60.429 47.826 0.00 2.12 35.61 3.33
162 163 2.166050 TGGGCACAATACATCATGTTGC 59.834 45.455 0.00 0.00 32.83 4.17
163 164 2.453080 GGCACAATACATCATGTTGCG 58.547 47.619 0.00 0.00 32.83 4.85
164 165 2.159393 GGCACAATACATCATGTTGCGT 60.159 45.455 0.00 0.00 32.83 5.24
165 166 3.100817 GCACAATACATCATGTTGCGTC 58.899 45.455 0.00 0.00 32.83 5.19
166 167 3.426025 GCACAATACATCATGTTGCGTCA 60.426 43.478 0.00 0.00 32.83 4.35
167 168 4.336932 CACAATACATCATGTTGCGTCAG 58.663 43.478 0.00 0.00 32.83 3.51
168 169 4.093261 CACAATACATCATGTTGCGTCAGA 59.907 41.667 0.00 0.00 32.83 3.27
169 170 4.093408 ACAATACATCATGTTGCGTCAGAC 59.907 41.667 0.00 0.00 32.83 3.51
170 171 2.462456 ACATCATGTTGCGTCAGACT 57.538 45.000 3.61 0.00 0.00 3.24
171 172 2.771089 ACATCATGTTGCGTCAGACTT 58.229 42.857 3.61 0.00 0.00 3.01
172 173 2.481568 ACATCATGTTGCGTCAGACTTG 59.518 45.455 3.61 0.00 0.00 3.16
173 174 0.867746 TCATGTTGCGTCAGACTTGC 59.132 50.000 0.00 0.00 0.00 4.01
174 175 0.110056 CATGTTGCGTCAGACTTGCC 60.110 55.000 0.00 0.00 0.00 4.52
175 176 0.250467 ATGTTGCGTCAGACTTGCCT 60.250 50.000 0.00 0.00 0.00 4.75
176 177 1.159713 TGTTGCGTCAGACTTGCCTG 61.160 55.000 0.00 0.00 35.55 4.85
177 178 1.597854 TTGCGTCAGACTTGCCTGG 60.598 57.895 0.00 0.00 34.99 4.45
178 179 3.426568 GCGTCAGACTTGCCTGGC 61.427 66.667 12.87 12.87 35.54 4.85
180 181 3.426568 GTCAGACTTGCCTGGCGC 61.427 66.667 14.98 0.00 34.99 6.53
222 223 4.759893 GGACACCTCCCGTACTCT 57.240 61.111 0.00 0.00 0.00 3.24
223 224 2.190756 GGACACCTCCCGTACTCTG 58.809 63.158 0.00 0.00 0.00 3.35
224 225 0.611340 GGACACCTCCCGTACTCTGT 60.611 60.000 0.00 0.00 0.00 3.41
225 226 1.254954 GACACCTCCCGTACTCTGTT 58.745 55.000 0.00 0.00 0.00 3.16
226 227 1.617357 GACACCTCCCGTACTCTGTTT 59.383 52.381 0.00 0.00 0.00 2.83
227 228 2.036862 GACACCTCCCGTACTCTGTTTT 59.963 50.000 0.00 0.00 0.00 2.43
228 229 2.436911 ACACCTCCCGTACTCTGTTTTT 59.563 45.455 0.00 0.00 0.00 1.94
229 230 3.064931 CACCTCCCGTACTCTGTTTTTC 58.935 50.000 0.00 0.00 0.00 2.29
230 231 2.970640 ACCTCCCGTACTCTGTTTTTCT 59.029 45.455 0.00 0.00 0.00 2.52
231 232 4.021719 CACCTCCCGTACTCTGTTTTTCTA 60.022 45.833 0.00 0.00 0.00 2.10
232 233 4.021632 ACCTCCCGTACTCTGTTTTTCTAC 60.022 45.833 0.00 0.00 0.00 2.59
233 234 4.492611 CTCCCGTACTCTGTTTTTCTACC 58.507 47.826 0.00 0.00 0.00 3.18
234 235 4.154942 TCCCGTACTCTGTTTTTCTACCT 58.845 43.478 0.00 0.00 0.00 3.08
235 236 4.590222 TCCCGTACTCTGTTTTTCTACCTT 59.410 41.667 0.00 0.00 0.00 3.50
236 237 5.774690 TCCCGTACTCTGTTTTTCTACCTTA 59.225 40.000 0.00 0.00 0.00 2.69
237 238 6.438425 TCCCGTACTCTGTTTTTCTACCTTAT 59.562 38.462 0.00 0.00 0.00 1.73
238 239 7.615365 TCCCGTACTCTGTTTTTCTACCTTATA 59.385 37.037 0.00 0.00 0.00 0.98
239 240 7.704047 CCCGTACTCTGTTTTTCTACCTTATAC 59.296 40.741 0.00 0.00 0.00 1.47
240 241 8.465201 CCGTACTCTGTTTTTCTACCTTATACT 58.535 37.037 0.00 0.00 0.00 2.12
241 242 9.852091 CGTACTCTGTTTTTCTACCTTATACTT 57.148 33.333 0.00 0.00 0.00 2.24
245 246 9.597170 CTCTGTTTTTCTACCTTATACTTACCC 57.403 37.037 0.00 0.00 0.00 3.69
246 247 9.330220 TCTGTTTTTCTACCTTATACTTACCCT 57.670 33.333 0.00 0.00 0.00 4.34
247 248 9.597170 CTGTTTTTCTACCTTATACTTACCCTC 57.403 37.037 0.00 0.00 0.00 4.30
248 249 8.542926 TGTTTTTCTACCTTATACTTACCCTCC 58.457 37.037 0.00 0.00 0.00 4.30
249 250 8.542926 GTTTTTCTACCTTATACTTACCCTCCA 58.457 37.037 0.00 0.00 0.00 3.86
250 251 8.683776 TTTTCTACCTTATACTTACCCTCCAA 57.316 34.615 0.00 0.00 0.00 3.53
251 252 7.909485 TTCTACCTTATACTTACCCTCCAAG 57.091 40.000 0.00 0.00 0.00 3.61
252 253 7.229951 TCTACCTTATACTTACCCTCCAAGA 57.770 40.000 0.00 0.00 0.00 3.02
253 254 7.834046 TCTACCTTATACTTACCCTCCAAGAT 58.166 38.462 0.00 0.00 0.00 2.40
254 255 8.963277 TCTACCTTATACTTACCCTCCAAGATA 58.037 37.037 0.00 0.00 0.00 1.98
255 256 9.597681 CTACCTTATACTTACCCTCCAAGATAA 57.402 37.037 0.00 0.00 0.00 1.75
256 257 8.865244 ACCTTATACTTACCCTCCAAGATAAA 57.135 34.615 0.00 0.00 0.00 1.40
257 258 9.287818 ACCTTATACTTACCCTCCAAGATAAAA 57.712 33.333 0.00 0.00 0.00 1.52
292 293 8.723942 ATATACTTTCTGAACCTGTTGATCAC 57.276 34.615 0.00 0.00 0.00 3.06
293 294 4.137543 ACTTTCTGAACCTGTTGATCACC 58.862 43.478 0.00 0.00 0.00 4.02
294 295 2.455674 TCTGAACCTGTTGATCACCG 57.544 50.000 0.00 0.00 0.00 4.94
295 296 1.691976 TCTGAACCTGTTGATCACCGT 59.308 47.619 0.00 0.00 0.00 4.83
296 297 2.894765 TCTGAACCTGTTGATCACCGTA 59.105 45.455 0.00 0.00 0.00 4.02
297 298 3.513912 TCTGAACCTGTTGATCACCGTAT 59.486 43.478 0.00 0.00 0.00 3.06
298 299 3.857052 TGAACCTGTTGATCACCGTATC 58.143 45.455 0.00 0.00 0.00 2.24
299 300 2.579207 ACCTGTTGATCACCGTATCG 57.421 50.000 0.00 0.00 0.00 2.92
300 301 1.209128 CCTGTTGATCACCGTATCGC 58.791 55.000 0.00 0.00 0.00 4.58
301 302 0.846401 CTGTTGATCACCGTATCGCG 59.154 55.000 0.00 0.00 40.95 5.87
311 312 3.867723 CGTATCGCGGAGAAATCCT 57.132 52.632 6.13 0.00 36.85 3.24
312 313 2.135664 CGTATCGCGGAGAAATCCTT 57.864 50.000 6.13 0.00 36.85 3.36
313 314 2.470821 CGTATCGCGGAGAAATCCTTT 58.529 47.619 6.13 0.00 36.85 3.11
314 315 2.218759 CGTATCGCGGAGAAATCCTTTG 59.781 50.000 6.13 0.00 36.85 2.77
315 316 1.017387 ATCGCGGAGAAATCCTTTGC 58.983 50.000 6.13 0.00 0.00 3.68
316 317 0.036388 TCGCGGAGAAATCCTTTGCT 60.036 50.000 6.13 0.00 0.00 3.91
317 318 0.375106 CGCGGAGAAATCCTTTGCTC 59.625 55.000 0.00 0.00 0.00 4.26
318 319 1.743996 GCGGAGAAATCCTTTGCTCT 58.256 50.000 0.00 0.00 0.00 4.09
319 320 1.668237 GCGGAGAAATCCTTTGCTCTC 59.332 52.381 0.00 0.00 34.75 3.20
320 321 2.679349 GCGGAGAAATCCTTTGCTCTCT 60.679 50.000 0.00 0.00 35.64 3.10
321 322 3.604582 CGGAGAAATCCTTTGCTCTCTT 58.395 45.455 0.00 0.00 35.64 2.85
322 323 4.006319 CGGAGAAATCCTTTGCTCTCTTT 58.994 43.478 0.00 0.00 35.64 2.52
323 324 4.457257 CGGAGAAATCCTTTGCTCTCTTTT 59.543 41.667 0.00 0.00 35.64 2.27
324 325 5.391416 CGGAGAAATCCTTTGCTCTCTTTTC 60.391 44.000 0.00 0.00 35.64 2.29
325 326 5.709631 GGAGAAATCCTTTGCTCTCTTTTCT 59.290 40.000 0.00 0.00 35.64 2.52
326 327 6.208402 GGAGAAATCCTTTGCTCTCTTTTCTT 59.792 38.462 0.00 0.00 35.64 2.52
327 328 6.979465 AGAAATCCTTTGCTCTCTTTTCTTG 58.021 36.000 0.00 0.00 30.09 3.02
328 329 4.780275 ATCCTTTGCTCTCTTTTCTTGC 57.220 40.909 0.00 0.00 0.00 4.01
329 330 3.825328 TCCTTTGCTCTCTTTTCTTGCT 58.175 40.909 0.00 0.00 0.00 3.91
330 331 3.567164 TCCTTTGCTCTCTTTTCTTGCTG 59.433 43.478 0.00 0.00 0.00 4.41
331 332 3.317430 CCTTTGCTCTCTTTTCTTGCTGT 59.683 43.478 0.00 0.00 0.00 4.40
332 333 4.202090 CCTTTGCTCTCTTTTCTTGCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
333 334 4.989279 TTGCTCTCTTTTCTTGCTGTTT 57.011 36.364 0.00 0.00 0.00 2.83
334 335 4.989279 TGCTCTCTTTTCTTGCTGTTTT 57.011 36.364 0.00 0.00 0.00 2.43
335 336 4.925068 TGCTCTCTTTTCTTGCTGTTTTC 58.075 39.130 0.00 0.00 0.00 2.29
336 337 4.641989 TGCTCTCTTTTCTTGCTGTTTTCT 59.358 37.500 0.00 0.00 0.00 2.52
337 338 4.974888 GCTCTCTTTTCTTGCTGTTTTCTG 59.025 41.667 0.00 0.00 0.00 3.02
338 339 5.449725 GCTCTCTTTTCTTGCTGTTTTCTGT 60.450 40.000 0.00 0.00 0.00 3.41
339 340 6.124088 TCTCTTTTCTTGCTGTTTTCTGTC 57.876 37.500 0.00 0.00 0.00 3.51
340 341 5.647658 TCTCTTTTCTTGCTGTTTTCTGTCA 59.352 36.000 0.00 0.00 0.00 3.58
341 342 5.883661 TCTTTTCTTGCTGTTTTCTGTCAG 58.116 37.500 0.00 0.00 35.12 3.51
342 343 5.647658 TCTTTTCTTGCTGTTTTCTGTCAGA 59.352 36.000 0.00 0.00 34.02 3.27
343 344 6.319658 TCTTTTCTTGCTGTTTTCTGTCAGAT 59.680 34.615 2.68 0.00 34.02 2.90
344 345 5.679734 TTCTTGCTGTTTTCTGTCAGATC 57.320 39.130 2.68 0.00 34.02 2.75
345 346 4.965814 TCTTGCTGTTTTCTGTCAGATCT 58.034 39.130 2.68 0.00 34.02 2.75
346 347 4.753610 TCTTGCTGTTTTCTGTCAGATCTG 59.246 41.667 17.07 17.07 34.02 2.90
347 348 4.077300 TGCTGTTTTCTGTCAGATCTGT 57.923 40.909 21.92 0.00 34.02 3.41
348 349 4.454678 TGCTGTTTTCTGTCAGATCTGTT 58.545 39.130 21.92 0.00 34.02 3.16
349 350 4.274214 TGCTGTTTTCTGTCAGATCTGTTG 59.726 41.667 21.92 12.97 34.02 3.33
350 351 4.320057 GCTGTTTTCTGTCAGATCTGTTGG 60.320 45.833 21.92 12.60 34.02 3.77
351 352 4.136796 TGTTTTCTGTCAGATCTGTTGGG 58.863 43.478 21.92 11.00 0.00 4.12
352 353 2.479566 TTCTGTCAGATCTGTTGGGC 57.520 50.000 21.92 9.21 0.00 5.36
353 354 0.615331 TCTGTCAGATCTGTTGGGCC 59.385 55.000 21.92 0.00 0.00 5.80
354 355 0.325933 CTGTCAGATCTGTTGGGCCA 59.674 55.000 21.92 0.00 0.00 5.36
355 356 0.325933 TGTCAGATCTGTTGGGCCAG 59.674 55.000 21.92 0.00 0.00 4.85
356 357 0.393537 GTCAGATCTGTTGGGCCAGG 60.394 60.000 21.92 1.27 33.14 4.45
357 358 1.751927 CAGATCTGTTGGGCCAGGC 60.752 63.158 14.95 1.26 33.14 4.85
358 359 2.233566 AGATCTGTTGGGCCAGGCA 61.234 57.895 15.19 9.52 33.14 4.75
359 360 1.076485 GATCTGTTGGGCCAGGCAT 60.076 57.895 15.19 0.00 33.14 4.40
360 361 1.076485 ATCTGTTGGGCCAGGCATC 60.076 57.895 15.19 5.34 33.14 3.91
361 362 1.866483 ATCTGTTGGGCCAGGCATCA 61.866 55.000 15.19 8.28 33.14 3.07
362 363 1.380785 CTGTTGGGCCAGGCATCAT 60.381 57.895 15.19 0.00 0.00 2.45
363 364 1.672854 CTGTTGGGCCAGGCATCATG 61.673 60.000 15.19 1.48 0.00 3.07
364 365 1.683365 GTTGGGCCAGGCATCATGT 60.683 57.895 15.19 0.00 0.00 3.21
365 366 1.380246 TTGGGCCAGGCATCATGTC 60.380 57.895 15.19 0.00 0.00 3.06
366 367 1.866483 TTGGGCCAGGCATCATGTCT 61.866 55.000 15.19 0.00 28.47 3.41
367 368 1.076485 GGGCCAGGCATCATGTCTT 60.076 57.895 15.19 0.00 23.66 3.01
368 369 1.105759 GGGCCAGGCATCATGTCTTC 61.106 60.000 15.19 0.00 23.66 2.87
369 370 0.106819 GGCCAGGCATCATGTCTTCT 60.107 55.000 15.19 0.00 23.66 2.85
370 371 1.684248 GGCCAGGCATCATGTCTTCTT 60.684 52.381 15.19 0.00 23.66 2.52
371 372 1.674962 GCCAGGCATCATGTCTTCTTC 59.325 52.381 6.55 0.00 23.66 2.87
372 373 2.683152 GCCAGGCATCATGTCTTCTTCT 60.683 50.000 6.55 0.00 23.66 2.85
373 374 3.618351 CCAGGCATCATGTCTTCTTCTT 58.382 45.455 0.00 0.00 23.66 2.52
374 375 3.626670 CCAGGCATCATGTCTTCTTCTTC 59.373 47.826 0.00 0.00 23.66 2.87
375 376 3.626670 CAGGCATCATGTCTTCTTCTTCC 59.373 47.826 0.00 0.00 23.66 3.46
376 377 3.522750 AGGCATCATGTCTTCTTCTTCCT 59.477 43.478 0.00 0.00 0.00 3.36
377 378 3.876320 GGCATCATGTCTTCTTCTTCCTC 59.124 47.826 0.00 0.00 0.00 3.71
378 379 3.876320 GCATCATGTCTTCTTCTTCCTCC 59.124 47.826 0.00 0.00 0.00 4.30
379 380 4.624843 GCATCATGTCTTCTTCTTCCTCCA 60.625 45.833 0.00 0.00 0.00 3.86
380 381 5.494724 CATCATGTCTTCTTCTTCCTCCAA 58.505 41.667 0.00 0.00 0.00 3.53
381 382 4.899502 TCATGTCTTCTTCTTCCTCCAAC 58.100 43.478 0.00 0.00 0.00 3.77
382 383 3.771577 TGTCTTCTTCTTCCTCCAACC 57.228 47.619 0.00 0.00 0.00 3.77
383 384 3.045634 TGTCTTCTTCTTCCTCCAACCA 58.954 45.455 0.00 0.00 0.00 3.67
384 385 3.181454 TGTCTTCTTCTTCCTCCAACCAC 60.181 47.826 0.00 0.00 0.00 4.16
385 386 2.037251 TCTTCTTCTTCCTCCAACCACG 59.963 50.000 0.00 0.00 0.00 4.94
386 387 1.420430 TCTTCTTCCTCCAACCACGT 58.580 50.000 0.00 0.00 0.00 4.49
387 388 1.070134 TCTTCTTCCTCCAACCACGTG 59.930 52.381 9.08 9.08 0.00 4.49
388 389 1.070134 CTTCTTCCTCCAACCACGTGA 59.930 52.381 19.30 0.00 0.00 4.35
389 390 1.124780 TCTTCCTCCAACCACGTGAA 58.875 50.000 19.30 0.00 0.00 3.18
390 391 1.487142 TCTTCCTCCAACCACGTGAAA 59.513 47.619 19.30 0.00 0.00 2.69
391 392 1.873591 CTTCCTCCAACCACGTGAAAG 59.126 52.381 19.30 2.42 0.00 2.62
392 393 1.124780 TCCTCCAACCACGTGAAAGA 58.875 50.000 19.30 7.22 0.00 2.52
393 394 1.070134 TCCTCCAACCACGTGAAAGAG 59.930 52.381 19.30 16.04 0.00 2.85
394 395 1.512926 CTCCAACCACGTGAAAGAGG 58.487 55.000 19.30 11.29 0.00 3.69
395 396 1.070134 CTCCAACCACGTGAAAGAGGA 59.930 52.381 19.30 14.84 0.00 3.71
396 397 1.697432 TCCAACCACGTGAAAGAGGAT 59.303 47.619 19.30 0.00 0.00 3.24
397 398 1.806542 CCAACCACGTGAAAGAGGATG 59.193 52.381 19.30 3.76 0.00 3.51
398 399 1.197721 CAACCACGTGAAAGAGGATGC 59.802 52.381 19.30 0.00 0.00 3.91
399 400 0.687354 ACCACGTGAAAGAGGATGCT 59.313 50.000 19.30 0.00 0.00 3.79
400 401 1.072331 ACCACGTGAAAGAGGATGCTT 59.928 47.619 19.30 0.00 0.00 3.91
401 402 1.466167 CCACGTGAAAGAGGATGCTTG 59.534 52.381 19.30 0.00 0.00 4.01
402 403 1.466167 CACGTGAAAGAGGATGCTTGG 59.534 52.381 10.90 0.00 0.00 3.61
403 404 1.072331 ACGTGAAAGAGGATGCTTGGT 59.928 47.619 0.00 0.00 0.00 3.67
404 405 1.734465 CGTGAAAGAGGATGCTTGGTC 59.266 52.381 0.00 0.00 0.00 4.02
405 406 1.734465 GTGAAAGAGGATGCTTGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
406 407 1.623311 TGAAAGAGGATGCTTGGTCGA 59.377 47.619 0.00 0.00 0.00 4.20
407 408 2.237143 TGAAAGAGGATGCTTGGTCGAT 59.763 45.455 0.00 0.00 0.00 3.59
408 409 2.322355 AAGAGGATGCTTGGTCGATG 57.678 50.000 0.00 0.00 0.00 3.84
409 410 1.489481 AGAGGATGCTTGGTCGATGA 58.511 50.000 0.00 0.00 0.00 2.92
410 411 1.833630 AGAGGATGCTTGGTCGATGAA 59.166 47.619 0.00 0.00 0.00 2.57
411 412 2.158986 AGAGGATGCTTGGTCGATGAAG 60.159 50.000 0.00 0.00 0.00 3.02
412 413 1.833630 AGGATGCTTGGTCGATGAAGA 59.166 47.619 9.84 0.00 0.00 2.87
413 414 2.437281 AGGATGCTTGGTCGATGAAGAT 59.563 45.455 9.84 2.36 0.00 2.40
414 415 2.805099 GGATGCTTGGTCGATGAAGATC 59.195 50.000 9.84 9.10 0.00 2.75
426 427 4.566545 GATGAAGATCGAGCTGAAGAGA 57.433 45.455 2.80 0.00 0.00 3.10
427 428 4.539870 GATGAAGATCGAGCTGAAGAGAG 58.460 47.826 2.80 0.00 0.00 3.20
428 429 3.615155 TGAAGATCGAGCTGAAGAGAGA 58.385 45.455 2.80 0.00 0.00 3.10
429 430 4.013050 TGAAGATCGAGCTGAAGAGAGAA 58.987 43.478 2.80 0.00 0.00 2.87
430 431 4.096231 TGAAGATCGAGCTGAAGAGAGAAG 59.904 45.833 2.80 0.00 0.00 2.85
431 432 3.884895 AGATCGAGCTGAAGAGAGAAGA 58.115 45.455 0.39 0.00 0.00 2.87
432 433 3.879295 AGATCGAGCTGAAGAGAGAAGAG 59.121 47.826 0.39 0.00 0.00 2.85
433 434 1.742831 TCGAGCTGAAGAGAGAAGAGC 59.257 52.381 0.00 0.00 0.00 4.09
434 435 1.202290 CGAGCTGAAGAGAGAAGAGCC 60.202 57.143 0.00 0.00 0.00 4.70
435 436 1.136891 GAGCTGAAGAGAGAAGAGCCC 59.863 57.143 0.00 0.00 0.00 5.19
436 437 0.179113 GCTGAAGAGAGAAGAGCCCG 60.179 60.000 0.00 0.00 0.00 6.13
437 438 0.179113 CTGAAGAGAGAAGAGCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
438 439 1.226831 GAAGAGAGAAGAGCCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
439 440 2.621371 GAAGAGAGAAGAGCCCGCGG 62.621 65.000 21.04 21.04 0.00 6.46
440 441 4.214327 GAGAGAAGAGCCCGCGGG 62.214 72.222 40.26 40.26 38.57 6.13
454 455 3.043419 CGGGAGCTATCGGAGGTG 58.957 66.667 0.00 0.00 35.50 4.00
460 461 1.069204 GAGCTATCGGAGGTGATGCAA 59.931 52.381 0.00 0.00 35.50 4.08
463 464 1.414181 CTATCGGAGGTGATGCAAGGT 59.586 52.381 0.00 0.00 0.00 3.50
497 498 6.528321 ACACAATGATGGTGGATACTATCTG 58.472 40.000 4.76 0.29 43.11 2.90
508 509 6.550108 GGTGGATACTATCTGGAGAACACTAA 59.450 42.308 0.00 0.00 37.61 2.24
512 513 5.941555 ACTATCTGGAGAACACTAAAGGG 57.058 43.478 0.00 0.00 0.00 3.95
522 523 4.841246 AGAACACTAAAGGGTGACAGAGAT 59.159 41.667 1.52 0.00 40.13 2.75
523 524 4.543590 ACACTAAAGGGTGACAGAGATG 57.456 45.455 1.52 0.00 40.13 2.90
574 581 1.488812 TGGTGTGAGCCACTTTGTAGT 59.511 47.619 6.83 0.00 43.94 2.73
577 584 3.746492 GGTGTGAGCCACTTTGTAGTTAG 59.254 47.826 6.83 0.00 43.94 2.34
582 589 7.011669 GTGTGAGCCACTTTGTAGTTAGTTTTA 59.988 37.037 6.83 0.00 41.11 1.52
589 596 9.551734 CCACTTTGTAGTTAGTTTTAGTAGGTT 57.448 33.333 0.00 0.00 30.26 3.50
602 609 2.607187 AGTAGGTTTGAGAATCGCACG 58.393 47.619 0.00 0.00 38.61 5.34
605 612 1.134694 GTTTGAGAATCGCACGGCC 59.865 57.895 0.00 0.00 38.61 6.13
616 623 2.358125 CACGGCCGTGTGGATTGA 60.358 61.111 42.92 0.00 40.91 2.57
617 624 1.745115 CACGGCCGTGTGGATTGAT 60.745 57.895 42.92 11.16 40.91 2.57
619 626 1.024579 ACGGCCGTGTGGATTGATTC 61.025 55.000 33.75 0.00 37.49 2.52
620 627 1.024046 CGGCCGTGTGGATTGATTCA 61.024 55.000 19.50 0.00 37.49 2.57
621 628 0.734889 GGCCGTGTGGATTGATTCAG 59.265 55.000 0.00 0.00 37.49 3.02
623 630 1.950484 GCCGTGTGGATTGATTCAGGT 60.950 52.381 0.00 0.00 37.49 4.00
624 631 2.009774 CCGTGTGGATTGATTCAGGTC 58.990 52.381 0.00 0.00 37.49 3.85
625 632 2.355108 CCGTGTGGATTGATTCAGGTCT 60.355 50.000 0.00 0.00 37.49 3.85
626 633 2.674852 CGTGTGGATTGATTCAGGTCTG 59.325 50.000 0.00 0.00 0.00 3.51
627 634 3.012518 GTGTGGATTGATTCAGGTCTGG 58.987 50.000 0.00 0.00 0.00 3.86
628 635 2.025981 TGTGGATTGATTCAGGTCTGGG 60.026 50.000 0.00 0.00 0.00 4.45
629 636 2.239654 GTGGATTGATTCAGGTCTGGGA 59.760 50.000 0.00 0.00 0.00 4.37
630 637 2.507058 TGGATTGATTCAGGTCTGGGAG 59.493 50.000 0.00 0.00 0.00 4.30
631 638 2.570135 GATTGATTCAGGTCTGGGAGC 58.430 52.381 0.00 0.00 0.00 4.70
632 639 1.661463 TTGATTCAGGTCTGGGAGCT 58.339 50.000 0.00 0.00 41.33 4.09
696 706 7.036425 TGAGTAATAAAAACACCCTATTCCCCT 60.036 37.037 0.00 0.00 0.00 4.79
700 710 3.739401 AAACACCCTATTCCCCTTCAG 57.261 47.619 0.00 0.00 0.00 3.02
706 716 5.222547 ACACCCTATTCCCCTTCAGAAAAAT 60.223 40.000 0.00 0.00 0.00 1.82
713 726 9.853177 CTATTCCCCTTCAGAAAAATATACAGT 57.147 33.333 0.00 0.00 0.00 3.55
719 732 9.892130 CCCTTCAGAAAAATATACAGTAGAACT 57.108 33.333 0.00 0.00 0.00 3.01
776 789 2.046700 CTAAGCCGACCCGCCAAA 60.047 61.111 0.00 0.00 0.00 3.28
840 862 0.538516 ACTCCTGCTGTGTCTCGACT 60.539 55.000 0.00 0.00 0.00 4.18
841 863 0.170116 CTCCTGCTGTGTCTCGACTC 59.830 60.000 0.00 0.00 0.00 3.36
842 864 0.250945 TCCTGCTGTGTCTCGACTCT 60.251 55.000 0.00 0.00 0.00 3.24
843 865 0.170116 CCTGCTGTGTCTCGACTCTC 59.830 60.000 0.00 0.00 0.00 3.20
844 866 0.877743 CTGCTGTGTCTCGACTCTCA 59.122 55.000 0.00 0.00 0.00 3.27
845 867 1.268079 CTGCTGTGTCTCGACTCTCAA 59.732 52.381 0.00 0.00 0.00 3.02
846 868 1.268079 TGCTGTGTCTCGACTCTCAAG 59.732 52.381 0.00 0.00 0.00 3.02
887 909 3.008923 TGGAAGGCCCAAATGGATTTTTC 59.991 43.478 0.00 0.00 43.29 2.29
888 910 3.264193 GGAAGGCCCAAATGGATTTTTCT 59.736 43.478 0.00 0.00 37.39 2.52
889 911 3.986996 AGGCCCAAATGGATTTTTCTG 57.013 42.857 0.00 0.00 37.39 3.02
890 912 2.026915 AGGCCCAAATGGATTTTTCTGC 60.027 45.455 0.00 0.00 37.39 4.26
891 913 2.001872 GCCCAAATGGATTTTTCTGCG 58.998 47.619 0.00 0.00 37.39 5.18
892 914 2.353605 GCCCAAATGGATTTTTCTGCGA 60.354 45.455 0.00 0.00 37.39 5.10
894 916 3.928375 CCCAAATGGATTTTTCTGCGAAG 59.072 43.478 0.00 0.00 37.39 3.79
895 917 4.321899 CCCAAATGGATTTTTCTGCGAAGA 60.322 41.667 0.00 0.00 37.39 2.87
896 918 4.622740 CCAAATGGATTTTTCTGCGAAGAC 59.377 41.667 0.00 0.00 37.39 3.01
897 919 5.464168 CAAATGGATTTTTCTGCGAAGACT 58.536 37.500 0.00 0.00 0.00 3.24
898 920 5.712152 AATGGATTTTTCTGCGAAGACTT 57.288 34.783 0.00 0.00 0.00 3.01
911 933 4.241681 GCGAAGACTTGAGAAGACTTGAT 58.758 43.478 5.91 0.00 42.13 2.57
948 970 2.426738 TGCTTCGCCCCAAATGAAATAG 59.573 45.455 0.00 0.00 0.00 1.73
959 981 6.461509 CCCCAAATGAAATAGATTTCCTTCCG 60.462 42.308 11.51 4.75 44.16 4.30
962 984 7.702348 CCAAATGAAATAGATTTCCTTCCGTTC 59.298 37.037 11.51 0.00 44.16 3.95
964 986 6.062258 TGAAATAGATTTCCTTCCGTTCCT 57.938 37.500 11.51 0.00 44.16 3.36
965 987 7.190335 TGAAATAGATTTCCTTCCGTTCCTA 57.810 36.000 11.51 0.00 44.16 2.94
969 991 5.087391 AGATTTCCTTCCGTTCCTACTTC 57.913 43.478 0.00 0.00 0.00 3.01
973 995 2.974099 TCCTTCCGTTCCTACTTCCAAA 59.026 45.455 0.00 0.00 0.00 3.28
975 997 4.042435 TCCTTCCGTTCCTACTTCCAAATT 59.958 41.667 0.00 0.00 0.00 1.82
984 1006 4.021719 TCCTACTTCCAAATTCTTCGTCGT 60.022 41.667 0.00 0.00 0.00 4.34
985 1007 4.326548 CCTACTTCCAAATTCTTCGTCGTC 59.673 45.833 0.00 0.00 0.00 4.20
986 1008 3.991367 ACTTCCAAATTCTTCGTCGTCT 58.009 40.909 0.00 0.00 0.00 4.18
987 1009 3.988517 ACTTCCAAATTCTTCGTCGTCTC 59.011 43.478 0.00 0.00 0.00 3.36
988 1010 2.955614 TCCAAATTCTTCGTCGTCTCC 58.044 47.619 0.00 0.00 0.00 3.71
990 1012 2.000447 CAAATTCTTCGTCGTCTCCCC 59.000 52.381 0.00 0.00 0.00 4.81
991 1013 0.535797 AATTCTTCGTCGTCTCCCCC 59.464 55.000 0.00 0.00 0.00 5.40
999 1040 1.001181 CGTCGTCTCCCCCAAAACTAA 59.999 52.381 0.00 0.00 0.00 2.24
1005 1046 4.412843 GTCTCCCCCAAAACTAAATGGAA 58.587 43.478 0.00 0.00 39.12 3.53
1063 1116 2.503061 CGATGGAGGCCTGTGAGG 59.497 66.667 12.00 0.00 38.80 3.86
1077 1130 4.329545 GAGGTCACCCGCCTGCAA 62.330 66.667 0.00 0.00 36.29 4.08
1087 1140 2.988800 GCCTGCAAGAGGAGCTCT 59.011 61.111 14.64 0.00 46.33 4.09
1101 1154 3.429141 CTCTTGTGGGCAGCGCTG 61.429 66.667 32.83 32.83 0.00 5.18
1116 1169 2.737180 CTGTCCAGCACGTCACCT 59.263 61.111 0.00 0.00 0.00 4.00
1237 1290 3.805307 CGCTCGCTGACGGAGAGT 61.805 66.667 15.41 0.00 42.58 3.24
1343 1409 2.041922 TAGCCGGATCACCCAGCT 60.042 61.111 5.05 0.00 42.48 4.24
1350 1416 1.679944 CGGATCACCCAGCTCAACAAT 60.680 52.381 0.00 0.00 34.14 2.71
1374 1443 5.675684 AATTTGGTTTTCGGGCTAATCAT 57.324 34.783 0.00 0.00 0.00 2.45
1375 1444 6.783708 AATTTGGTTTTCGGGCTAATCATA 57.216 33.333 0.00 0.00 0.00 2.15
1376 1445 5.570234 TTTGGTTTTCGGGCTAATCATAC 57.430 39.130 0.00 0.00 0.00 2.39
1377 1446 4.497291 TGGTTTTCGGGCTAATCATACT 57.503 40.909 0.00 0.00 0.00 2.12
1378 1447 4.850680 TGGTTTTCGGGCTAATCATACTT 58.149 39.130 0.00 0.00 0.00 2.24
1461 2702 1.402896 GGGAGCTGTCCATCGGATGA 61.403 60.000 19.30 3.05 46.07 2.92
1465 2706 1.825341 CTGTCCATCGGATGAGGCA 59.175 57.895 19.30 14.73 32.73 4.75
1487 2758 1.517361 TCGCCGACTCGAGGTACTA 59.483 57.895 18.41 0.00 41.55 1.82
1488 2759 0.807667 TCGCCGACTCGAGGTACTAC 60.808 60.000 18.41 0.00 41.55 2.73
1506 2777 4.296056 ACTACCTTCCCTCATTCCGTTAT 58.704 43.478 0.00 0.00 0.00 1.89
1512 2783 4.837093 TCCCTCATTCCGTTATTCTGTT 57.163 40.909 0.00 0.00 0.00 3.16
1516 2787 5.294552 CCCTCATTCCGTTATTCTGTTCTTC 59.705 44.000 0.00 0.00 0.00 2.87
1566 2841 3.419943 TCAATGAACAATGGTGCTAGCA 58.580 40.909 14.93 14.93 0.00 3.49
1567 2842 3.191162 TCAATGAACAATGGTGCTAGCAC 59.809 43.478 34.99 34.99 45.49 4.40
1586 2881 8.867935 GCTAGCACATATATAGTCAGAACATTG 58.132 37.037 10.63 0.00 0.00 2.82
1660 3265 8.854614 AAACTATCATGAAAGAAAGTAGCAGT 57.145 30.769 0.00 0.00 0.00 4.40
1662 3267 9.944376 AACTATCATGAAAGAAAGTAGCAGTTA 57.056 29.630 0.00 0.00 0.00 2.24
1681 3331 6.017605 GCAGTTATTAGTTCCCATCATCAGTG 60.018 42.308 0.00 0.00 0.00 3.66
1701 3351 4.082026 AGTGAGCTTTGCAACTTTTGTTCT 60.082 37.500 0.00 0.00 41.35 3.01
1710 3360 3.181497 GCAACTTTTGTTCTCTCTGTGCA 60.181 43.478 0.00 0.00 41.35 4.57
1711 3361 4.346129 CAACTTTTGTTCTCTCTGTGCAC 58.654 43.478 10.75 10.75 41.35 4.57
1712 3362 3.609853 ACTTTTGTTCTCTCTGTGCACA 58.390 40.909 20.37 20.37 0.00 4.57
1713 3363 4.202441 ACTTTTGTTCTCTCTGTGCACAT 58.798 39.130 22.00 0.00 0.00 3.21
1715 3365 5.126061 ACTTTTGTTCTCTCTGTGCACATTT 59.874 36.000 22.00 0.00 0.00 2.32
1716 3366 5.581126 TTTGTTCTCTCTGTGCACATTTT 57.419 34.783 22.00 0.00 0.00 1.82
1719 3369 5.122519 TGTTCTCTCTGTGCACATTTTGTA 58.877 37.500 22.00 2.27 0.00 2.41
1720 3370 5.237127 TGTTCTCTCTGTGCACATTTTGTAG 59.763 40.000 22.00 11.94 0.00 2.74
1722 3372 2.480037 TCTCTGTGCACATTTTGTAGCG 59.520 45.455 22.00 5.23 30.65 4.26
1723 3373 2.480037 CTCTGTGCACATTTTGTAGCGA 59.520 45.455 22.00 9.65 30.65 4.93
1724 3374 3.073678 TCTGTGCACATTTTGTAGCGAT 58.926 40.909 22.00 0.00 30.65 4.58
1725 3375 3.120234 TCTGTGCACATTTTGTAGCGATG 60.120 43.478 22.00 3.63 30.65 3.84
1726 3376 1.913403 GTGCACATTTTGTAGCGATGC 59.087 47.619 13.17 0.00 30.65 3.91
1727 3377 1.811965 TGCACATTTTGTAGCGATGCT 59.188 42.857 0.00 0.00 43.41 3.79
1728 3378 3.006247 TGCACATTTTGTAGCGATGCTA 58.994 40.909 0.00 0.00 40.44 3.49
1729 3379 3.627123 TGCACATTTTGTAGCGATGCTAT 59.373 39.130 1.38 0.00 43.30 2.97
1730 3380 4.214437 GCACATTTTGTAGCGATGCTATC 58.786 43.478 1.38 0.00 43.30 2.08
1731 3381 4.024556 GCACATTTTGTAGCGATGCTATCT 60.025 41.667 1.38 0.00 43.30 1.98
1732 3382 5.177511 GCACATTTTGTAGCGATGCTATCTA 59.822 40.000 1.38 0.00 43.30 1.98
1733 3383 6.617317 GCACATTTTGTAGCGATGCTATCTAG 60.617 42.308 1.38 0.00 43.30 2.43
1804 3454 9.283768 TCGTTATGAATCCTAAACCTATACGTA 57.716 33.333 0.00 0.00 0.00 3.57
1848 3498 4.877282 AGTGCTCAACTCAGACTAGTTTC 58.123 43.478 0.00 0.00 37.61 2.78
1854 3504 2.609747 ACTCAGACTAGTTTCCTGGCA 58.390 47.619 9.50 0.00 0.00 4.92
1909 3559 0.835941 CCCAAGGCTCAGCATACTCT 59.164 55.000 0.00 0.00 0.00 3.24
1952 3602 2.948979 GCCAACGATTCATATGGGTTGA 59.051 45.455 20.97 0.00 40.16 3.18
1971 3621 2.699768 CCGACGGTTACTACGGCCA 61.700 63.158 5.48 0.00 38.98 5.36
2073 3723 4.245660 CAAAGAAGCATGAGACGGAACTA 58.754 43.478 0.00 0.00 0.00 2.24
2113 3763 3.428589 GCAAAAGAGCTGATGGTTGGATC 60.429 47.826 0.00 0.00 0.00 3.36
2135 3785 1.596934 CTGGAGCTGGGCGAGTTTA 59.403 57.895 0.00 0.00 0.00 2.01
2161 3811 1.302511 GGGGCACGAATATGGCGAT 60.303 57.895 5.38 0.00 45.84 4.58
2188 3838 3.131933 CCTTCGGTCTGTCAGAGATGAAT 59.868 47.826 1.75 0.00 31.32 2.57
2266 3916 2.187946 GGAGGCATCCACACCGAG 59.812 66.667 13.69 0.00 45.87 4.63
2267 3917 2.660064 GGAGGCATCCACACCGAGT 61.660 63.158 13.69 0.00 45.87 4.18
2268 3918 1.153549 GAGGCATCCACACCGAGTC 60.154 63.158 0.00 0.00 0.00 3.36
2281 3931 3.462678 GAGTCCCGAGCCAGTCCC 61.463 72.222 0.00 0.00 0.00 4.46
2307 3958 2.517402 GGGCGACACACAACCCAA 60.517 61.111 0.00 0.00 42.33 4.12
2315 3966 1.114722 CACACAACCCAATGGCTGGT 61.115 55.000 0.00 0.00 44.76 4.00
2318 3969 0.827507 ACAACCCAATGGCTGGTGAC 60.828 55.000 0.56 0.00 44.76 3.67
2337 3989 2.359169 GGCCTCCACCGAGTGATGA 61.359 63.158 0.00 0.00 35.23 2.92
2362 4014 1.675483 TGTTTTTGCGCTCATCACACT 59.325 42.857 9.73 0.00 0.00 3.55
2364 4016 0.040157 TTTTGCGCTCATCACACTGC 60.040 50.000 9.73 0.00 0.00 4.40
2368 4020 1.964290 GCGCTCATCACACTGCTGTC 61.964 60.000 0.00 0.00 0.00 3.51
2380 4032 6.935167 TCACACTGCTGTCTAAATCAGATAA 58.065 36.000 0.00 0.00 35.17 1.75
2381 4033 7.559486 TCACACTGCTGTCTAAATCAGATAAT 58.441 34.615 0.00 0.00 35.17 1.28
2382 4034 8.043113 TCACACTGCTGTCTAAATCAGATAATT 58.957 33.333 0.00 0.00 35.17 1.40
2389 4041 9.160496 GCTGTCTAAATCAGATAATTATCCCAG 57.840 37.037 19.67 11.51 35.17 4.45
2454 4106 3.243877 CGAATGCGAGAGATCGTGAAATT 59.756 43.478 0.00 0.00 40.82 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.950210 TCTTATTTTCATGATTCTGGAGTGTTC 58.050 33.333 0.00 0.00 0.00 3.18
1 2 8.868522 TCTTATTTTCATGATTCTGGAGTGTT 57.131 30.769 0.00 0.00 0.00 3.32
3 4 8.404000 CCTTCTTATTTTCATGATTCTGGAGTG 58.596 37.037 0.00 0.00 0.00 3.51
4 5 8.112183 ACCTTCTTATTTTCATGATTCTGGAGT 58.888 33.333 0.00 0.00 0.00 3.85
5 6 8.517062 ACCTTCTTATTTTCATGATTCTGGAG 57.483 34.615 0.00 0.00 0.00 3.86
6 7 9.396022 GTACCTTCTTATTTTCATGATTCTGGA 57.604 33.333 0.00 0.00 0.00 3.86
7 8 8.338259 CGTACCTTCTTATTTTCATGATTCTGG 58.662 37.037 0.00 0.00 0.00 3.86
10 11 8.879759 TGACGTACCTTCTTATTTTCATGATTC 58.120 33.333 0.00 0.00 0.00 2.52
11 12 8.786826 TGACGTACCTTCTTATTTTCATGATT 57.213 30.769 0.00 0.00 0.00 2.57
12 13 8.964476 ATGACGTACCTTCTTATTTTCATGAT 57.036 30.769 0.00 0.00 0.00 2.45
13 14 9.309516 GTATGACGTACCTTCTTATTTTCATGA 57.690 33.333 0.00 0.00 0.00 3.07
14 15 8.266682 CGTATGACGTACCTTCTTATTTTCATG 58.733 37.037 0.00 0.00 36.74 3.07
15 16 7.437267 CCGTATGACGTACCTTCTTATTTTCAT 59.563 37.037 0.00 0.00 40.58 2.57
16 17 6.753279 CCGTATGACGTACCTTCTTATTTTCA 59.247 38.462 0.00 0.00 40.58 2.69
17 18 6.753744 ACCGTATGACGTACCTTCTTATTTTC 59.246 38.462 0.00 0.00 40.58 2.29
18 19 6.633856 ACCGTATGACGTACCTTCTTATTTT 58.366 36.000 0.00 0.00 40.58 1.82
19 20 6.212888 ACCGTATGACGTACCTTCTTATTT 57.787 37.500 0.00 0.00 40.58 1.40
20 21 5.841957 ACCGTATGACGTACCTTCTTATT 57.158 39.130 0.00 0.00 40.58 1.40
21 22 6.543831 ACTTACCGTATGACGTACCTTCTTAT 59.456 38.462 0.00 0.00 40.58 1.73
22 23 5.880332 ACTTACCGTATGACGTACCTTCTTA 59.120 40.000 0.00 0.00 40.58 2.10
23 24 4.702131 ACTTACCGTATGACGTACCTTCTT 59.298 41.667 0.00 0.00 40.58 2.52
24 25 4.265073 ACTTACCGTATGACGTACCTTCT 58.735 43.478 0.00 0.00 40.58 2.85
25 26 4.622701 ACTTACCGTATGACGTACCTTC 57.377 45.455 0.00 0.00 40.58 3.46
26 27 6.322491 GTTTACTTACCGTATGACGTACCTT 58.678 40.000 0.00 0.00 40.58 3.50
27 28 5.447279 CGTTTACTTACCGTATGACGTACCT 60.447 44.000 0.00 0.00 40.58 3.08
28 29 4.728608 CGTTTACTTACCGTATGACGTACC 59.271 45.833 0.00 0.00 40.58 3.34
29 30 4.728608 CCGTTTACTTACCGTATGACGTAC 59.271 45.833 0.00 0.00 40.58 3.67
30 31 4.632251 TCCGTTTACTTACCGTATGACGTA 59.368 41.667 0.00 0.00 40.58 3.57
31 32 3.438781 TCCGTTTACTTACCGTATGACGT 59.561 43.478 0.00 0.00 40.58 4.34
32 33 3.786048 GTCCGTTTACTTACCGTATGACG 59.214 47.826 0.00 0.00 42.11 4.35
33 34 4.986622 AGTCCGTTTACTTACCGTATGAC 58.013 43.478 0.00 0.00 0.00 3.06
34 35 4.096382 GGAGTCCGTTTACTTACCGTATGA 59.904 45.833 0.00 0.00 0.00 2.15
35 36 4.354587 GGAGTCCGTTTACTTACCGTATG 58.645 47.826 0.00 0.00 0.00 2.39
36 37 3.065371 CGGAGTCCGTTTACTTACCGTAT 59.935 47.826 23.83 0.00 42.73 3.06
37 38 2.418628 CGGAGTCCGTTTACTTACCGTA 59.581 50.000 23.83 0.00 42.73 4.02
38 39 1.200020 CGGAGTCCGTTTACTTACCGT 59.800 52.381 23.83 0.00 42.73 4.83
39 40 1.468054 CCGGAGTCCGTTTACTTACCG 60.468 57.143 28.98 6.78 46.80 4.02
40 41 1.818674 TCCGGAGTCCGTTTACTTACC 59.181 52.381 28.98 0.00 46.80 2.85
41 42 3.575965 TTCCGGAGTCCGTTTACTTAC 57.424 47.619 28.98 0.00 46.80 2.34
42 43 4.599047 TTTTCCGGAGTCCGTTTACTTA 57.401 40.909 28.98 5.90 46.80 2.24
43 44 3.473923 TTTTCCGGAGTCCGTTTACTT 57.526 42.857 28.98 0.00 46.80 2.24
44 45 3.593096 GATTTTCCGGAGTCCGTTTACT 58.407 45.455 28.98 11.47 46.80 2.24
45 46 2.674852 GGATTTTCCGGAGTCCGTTTAC 59.325 50.000 28.98 14.68 46.80 2.01
46 47 2.976589 GGATTTTCCGGAGTCCGTTTA 58.023 47.619 28.98 12.25 46.80 2.01
47 48 1.817357 GGATTTTCCGGAGTCCGTTT 58.183 50.000 28.98 9.49 46.80 3.60
48 49 3.545724 GGATTTTCCGGAGTCCGTT 57.454 52.632 28.98 9.14 46.80 4.44
56 57 6.836953 AAAAATATTTTTGCGGATTTTCCGG 58.163 32.000 22.30 0.00 45.51 5.14
102 103 9.559732 CCTGGAAGTTTCTTTATTTCCAAAATT 57.440 29.630 6.31 0.00 46.00 1.82
103 104 8.933653 TCCTGGAAGTTTCTTTATTTCCAAAAT 58.066 29.630 0.00 0.00 46.00 1.82
104 105 8.312669 TCCTGGAAGTTTCTTTATTTCCAAAA 57.687 30.769 0.00 0.00 46.00 2.44
105 106 7.906199 TCCTGGAAGTTTCTTTATTTCCAAA 57.094 32.000 0.00 0.00 46.00 3.28
106 107 7.471399 GCTTCCTGGAAGTTTCTTTATTTCCAA 60.471 37.037 31.20 0.00 46.00 3.53
107 108 6.015434 GCTTCCTGGAAGTTTCTTTATTTCCA 60.015 38.462 31.20 4.88 44.95 3.53
108 109 6.390721 GCTTCCTGGAAGTTTCTTTATTTCC 58.609 40.000 31.20 11.13 41.27 3.13
109 110 6.086871 CGCTTCCTGGAAGTTTCTTTATTTC 58.913 40.000 31.20 13.33 41.27 2.17
110 111 5.535030 ACGCTTCCTGGAAGTTTCTTTATTT 59.465 36.000 31.20 6.85 41.27 1.40
111 112 5.070685 ACGCTTCCTGGAAGTTTCTTTATT 58.929 37.500 31.20 8.17 41.27 1.40
112 113 4.652822 ACGCTTCCTGGAAGTTTCTTTAT 58.347 39.130 31.20 10.45 41.27 1.40
113 114 4.062991 GACGCTTCCTGGAAGTTTCTTTA 58.937 43.478 31.20 0.00 41.27 1.85
114 115 2.879026 GACGCTTCCTGGAAGTTTCTTT 59.121 45.455 31.20 13.62 41.27 2.52
115 116 2.495084 GACGCTTCCTGGAAGTTTCTT 58.505 47.619 31.20 13.28 41.27 2.52
116 117 1.270893 GGACGCTTCCTGGAAGTTTCT 60.271 52.381 31.20 15.15 41.27 2.52
117 118 1.157585 GGACGCTTCCTGGAAGTTTC 58.842 55.000 31.20 25.98 41.27 2.78
118 119 0.250770 GGGACGCTTCCTGGAAGTTT 60.251 55.000 31.20 20.97 42.38 2.66
119 120 1.128188 AGGGACGCTTCCTGGAAGTT 61.128 55.000 31.20 21.28 42.38 2.66
120 121 1.536662 AGGGACGCTTCCTGGAAGT 60.537 57.895 31.20 17.77 42.38 3.01
121 122 1.078848 CAGGGACGCTTCCTGGAAG 60.079 63.158 28.23 28.23 45.95 3.46
122 123 3.068881 CAGGGACGCTTCCTGGAA 58.931 61.111 9.40 9.14 45.95 3.53
126 127 3.322466 CCACCAGGGACGCTTCCT 61.322 66.667 9.40 0.00 42.38 3.36
136 137 1.340893 TGATGTATTGTGCCCACCAGG 60.341 52.381 0.00 0.00 39.47 4.45
137 138 2.127271 TGATGTATTGTGCCCACCAG 57.873 50.000 0.00 0.00 0.00 4.00
138 139 2.291475 ACATGATGTATTGTGCCCACCA 60.291 45.455 0.00 0.00 0.00 4.17
139 140 2.378038 ACATGATGTATTGTGCCCACC 58.622 47.619 0.00 0.00 0.00 4.61
140 141 3.772932 CAACATGATGTATTGTGCCCAC 58.227 45.455 0.00 0.00 0.00 4.61
141 142 2.166050 GCAACATGATGTATTGTGCCCA 59.834 45.455 8.39 0.00 0.00 5.36
142 143 2.795681 CGCAACATGATGTATTGTGCCC 60.796 50.000 12.72 0.00 0.00 5.36
143 144 2.159393 ACGCAACATGATGTATTGTGCC 60.159 45.455 12.72 0.00 37.35 5.01
144 145 3.100817 GACGCAACATGATGTATTGTGC 58.899 45.455 9.32 9.32 37.35 4.57
145 146 4.093261 TCTGACGCAACATGATGTATTGTG 59.907 41.667 8.75 8.75 39.26 3.33
146 147 4.093408 GTCTGACGCAACATGATGTATTGT 59.907 41.667 0.00 0.00 0.00 2.71
147 148 4.330894 AGTCTGACGCAACATGATGTATTG 59.669 41.667 0.00 0.00 0.00 1.90
148 149 4.507710 AGTCTGACGCAACATGATGTATT 58.492 39.130 0.00 0.00 0.00 1.89
149 150 4.128925 AGTCTGACGCAACATGATGTAT 57.871 40.909 0.00 0.00 0.00 2.29
150 151 3.592898 AGTCTGACGCAACATGATGTA 57.407 42.857 0.00 0.00 0.00 2.29
151 152 2.462456 AGTCTGACGCAACATGATGT 57.538 45.000 0.00 0.00 0.00 3.06
152 153 2.726989 GCAAGTCTGACGCAACATGATG 60.727 50.000 0.00 0.00 0.00 3.07
153 154 1.466167 GCAAGTCTGACGCAACATGAT 59.534 47.619 0.00 0.00 0.00 2.45
154 155 0.867746 GCAAGTCTGACGCAACATGA 59.132 50.000 0.00 0.00 0.00 3.07
155 156 0.110056 GGCAAGTCTGACGCAACATG 60.110 55.000 9.37 0.00 0.00 3.21
156 157 0.250467 AGGCAAGTCTGACGCAACAT 60.250 50.000 9.37 0.00 34.77 2.71
157 158 1.146041 AGGCAAGTCTGACGCAACA 59.854 52.632 9.37 0.00 34.77 3.33
158 159 1.571460 CAGGCAAGTCTGACGCAAC 59.429 57.895 9.37 0.02 34.77 4.17
159 160 1.597854 CCAGGCAAGTCTGACGCAA 60.598 57.895 2.72 0.00 34.77 4.85
160 161 2.031012 CCAGGCAAGTCTGACGCA 59.969 61.111 2.72 0.00 34.77 5.24
161 162 3.426568 GCCAGGCAAGTCTGACGC 61.427 66.667 6.55 0.55 34.77 5.19
162 163 3.114616 CGCCAGGCAAGTCTGACG 61.115 66.667 13.30 0.00 34.77 4.35
163 164 3.426568 GCGCCAGGCAAGTCTGAC 61.427 66.667 13.30 0.00 42.87 3.51
205 206 0.611340 ACAGAGTACGGGAGGTGTCC 60.611 60.000 0.00 0.00 43.05 4.02
206 207 1.254954 AACAGAGTACGGGAGGTGTC 58.745 55.000 0.00 0.00 0.00 3.67
207 208 1.713297 AAACAGAGTACGGGAGGTGT 58.287 50.000 0.00 0.00 0.00 4.16
208 209 2.833631 AAAACAGAGTACGGGAGGTG 57.166 50.000 0.00 0.00 0.00 4.00
209 210 2.970640 AGAAAAACAGAGTACGGGAGGT 59.029 45.455 0.00 0.00 0.00 3.85
210 211 3.679824 AGAAAAACAGAGTACGGGAGG 57.320 47.619 0.00 0.00 0.00 4.30
211 212 4.220163 AGGTAGAAAAACAGAGTACGGGAG 59.780 45.833 0.00 0.00 0.00 4.30
212 213 4.154942 AGGTAGAAAAACAGAGTACGGGA 58.845 43.478 0.00 0.00 0.00 5.14
213 214 4.532314 AGGTAGAAAAACAGAGTACGGG 57.468 45.455 0.00 0.00 0.00 5.28
214 215 8.465201 AGTATAAGGTAGAAAAACAGAGTACGG 58.535 37.037 0.00 0.00 0.00 4.02
215 216 9.852091 AAGTATAAGGTAGAAAAACAGAGTACG 57.148 33.333 0.00 0.00 0.00 3.67
219 220 9.597170 GGGTAAGTATAAGGTAGAAAAACAGAG 57.403 37.037 0.00 0.00 0.00 3.35
220 221 9.330220 AGGGTAAGTATAAGGTAGAAAAACAGA 57.670 33.333 0.00 0.00 0.00 3.41
221 222 9.597170 GAGGGTAAGTATAAGGTAGAAAAACAG 57.403 37.037 0.00 0.00 0.00 3.16
222 223 8.542926 GGAGGGTAAGTATAAGGTAGAAAAACA 58.457 37.037 0.00 0.00 0.00 2.83
223 224 8.542926 TGGAGGGTAAGTATAAGGTAGAAAAAC 58.457 37.037 0.00 0.00 0.00 2.43
224 225 8.683776 TGGAGGGTAAGTATAAGGTAGAAAAA 57.316 34.615 0.00 0.00 0.00 1.94
225 226 8.683776 TTGGAGGGTAAGTATAAGGTAGAAAA 57.316 34.615 0.00 0.00 0.00 2.29
226 227 8.124430 TCTTGGAGGGTAAGTATAAGGTAGAAA 58.876 37.037 0.00 0.00 0.00 2.52
227 228 7.655403 TCTTGGAGGGTAAGTATAAGGTAGAA 58.345 38.462 0.00 0.00 0.00 2.10
228 229 7.229951 TCTTGGAGGGTAAGTATAAGGTAGA 57.770 40.000 0.00 0.00 0.00 2.59
229 230 9.597681 TTATCTTGGAGGGTAAGTATAAGGTAG 57.402 37.037 0.00 0.00 0.00 3.18
230 231 9.956558 TTTATCTTGGAGGGTAAGTATAAGGTA 57.043 33.333 0.00 0.00 0.00 3.08
231 232 8.865244 TTTATCTTGGAGGGTAAGTATAAGGT 57.135 34.615 0.00 0.00 0.00 3.50
266 267 9.817809 GTGATCAACAGGTTCAGAAAGTATATA 57.182 33.333 0.00 0.00 0.00 0.86
267 268 7.770897 GGTGATCAACAGGTTCAGAAAGTATAT 59.229 37.037 5.69 0.00 0.00 0.86
268 269 7.103641 GGTGATCAACAGGTTCAGAAAGTATA 58.896 38.462 5.69 0.00 0.00 1.47
269 270 5.940470 GGTGATCAACAGGTTCAGAAAGTAT 59.060 40.000 5.69 0.00 0.00 2.12
270 271 5.305585 GGTGATCAACAGGTTCAGAAAGTA 58.694 41.667 5.69 0.00 0.00 2.24
271 272 4.137543 GGTGATCAACAGGTTCAGAAAGT 58.862 43.478 5.69 0.00 0.00 2.66
272 273 3.187227 CGGTGATCAACAGGTTCAGAAAG 59.813 47.826 12.13 0.00 0.00 2.62
273 274 3.138304 CGGTGATCAACAGGTTCAGAAA 58.862 45.455 12.13 0.00 0.00 2.52
274 275 2.104111 ACGGTGATCAACAGGTTCAGAA 59.896 45.455 12.13 0.00 0.00 3.02
275 276 1.691976 ACGGTGATCAACAGGTTCAGA 59.308 47.619 12.13 0.00 0.00 3.27
276 277 2.169832 ACGGTGATCAACAGGTTCAG 57.830 50.000 12.13 0.00 0.00 3.02
277 278 3.674955 CGATACGGTGATCAACAGGTTCA 60.675 47.826 12.13 0.00 0.00 3.18
278 279 2.858344 CGATACGGTGATCAACAGGTTC 59.142 50.000 12.13 0.99 0.00 3.62
279 280 2.888594 CGATACGGTGATCAACAGGTT 58.111 47.619 12.13 0.00 0.00 3.50
280 281 1.470979 GCGATACGGTGATCAACAGGT 60.471 52.381 12.13 3.97 0.00 4.00
281 282 1.209128 GCGATACGGTGATCAACAGG 58.791 55.000 12.13 0.00 0.00 4.00
282 283 0.846401 CGCGATACGGTGATCAACAG 59.154 55.000 12.13 6.31 38.44 3.16
283 284 2.952273 CGCGATACGGTGATCAACA 58.048 52.632 12.13 0.00 38.44 3.33
301 302 5.709631 AGAAAAGAGAGCAAAGGATTTCTCC 59.290 40.000 0.00 0.00 35.03 3.71
302 303 6.816134 AGAAAAGAGAGCAAAGGATTTCTC 57.184 37.500 0.00 0.00 35.03 2.87
303 304 6.516360 GCAAGAAAAGAGAGCAAAGGATTTCT 60.516 38.462 0.00 0.00 35.03 2.52
304 305 5.632764 GCAAGAAAAGAGAGCAAAGGATTTC 59.367 40.000 0.00 0.00 35.03 2.17
305 306 5.303845 AGCAAGAAAAGAGAGCAAAGGATTT 59.696 36.000 0.00 0.00 40.26 2.17
306 307 4.831710 AGCAAGAAAAGAGAGCAAAGGATT 59.168 37.500 0.00 0.00 0.00 3.01
307 308 4.217983 CAGCAAGAAAAGAGAGCAAAGGAT 59.782 41.667 0.00 0.00 0.00 3.24
308 309 3.567164 CAGCAAGAAAAGAGAGCAAAGGA 59.433 43.478 0.00 0.00 0.00 3.36
309 310 3.317430 ACAGCAAGAAAAGAGAGCAAAGG 59.683 43.478 0.00 0.00 0.00 3.11
310 311 4.564940 ACAGCAAGAAAAGAGAGCAAAG 57.435 40.909 0.00 0.00 0.00 2.77
311 312 4.989279 AACAGCAAGAAAAGAGAGCAAA 57.011 36.364 0.00 0.00 0.00 3.68
312 313 4.989279 AAACAGCAAGAAAAGAGAGCAA 57.011 36.364 0.00 0.00 0.00 3.91
313 314 4.641989 AGAAAACAGCAAGAAAAGAGAGCA 59.358 37.500 0.00 0.00 0.00 4.26
314 315 4.974888 CAGAAAACAGCAAGAAAAGAGAGC 59.025 41.667 0.00 0.00 0.00 4.09
315 316 6.129053 ACAGAAAACAGCAAGAAAAGAGAG 57.871 37.500 0.00 0.00 0.00 3.20
316 317 5.647658 TGACAGAAAACAGCAAGAAAAGAGA 59.352 36.000 0.00 0.00 0.00 3.10
317 318 5.883661 TGACAGAAAACAGCAAGAAAAGAG 58.116 37.500 0.00 0.00 0.00 2.85
318 319 5.647658 TCTGACAGAAAACAGCAAGAAAAGA 59.352 36.000 1.64 0.00 34.57 2.52
319 320 5.883661 TCTGACAGAAAACAGCAAGAAAAG 58.116 37.500 1.64 0.00 34.57 2.27
320 321 5.895636 TCTGACAGAAAACAGCAAGAAAA 57.104 34.783 1.64 0.00 34.57 2.29
321 322 5.824624 AGATCTGACAGAAAACAGCAAGAAA 59.175 36.000 9.70 0.00 34.57 2.52
322 323 5.237996 CAGATCTGACAGAAAACAGCAAGAA 59.762 40.000 18.34 0.00 34.57 2.52
323 324 4.753610 CAGATCTGACAGAAAACAGCAAGA 59.246 41.667 18.34 0.00 34.57 3.02
324 325 4.514441 ACAGATCTGACAGAAAACAGCAAG 59.486 41.667 29.27 0.00 34.57 4.01
325 326 4.454678 ACAGATCTGACAGAAAACAGCAA 58.545 39.130 29.27 0.00 34.57 3.91
326 327 4.077300 ACAGATCTGACAGAAAACAGCA 57.923 40.909 29.27 0.00 34.57 4.41
327 328 4.320057 CCAACAGATCTGACAGAAAACAGC 60.320 45.833 29.27 0.00 34.57 4.40
328 329 4.214971 CCCAACAGATCTGACAGAAAACAG 59.785 45.833 29.27 4.23 35.72 3.16
329 330 4.136796 CCCAACAGATCTGACAGAAAACA 58.863 43.478 29.27 0.00 0.00 2.83
330 331 3.057946 GCCCAACAGATCTGACAGAAAAC 60.058 47.826 29.27 6.81 0.00 2.43
331 332 3.149196 GCCCAACAGATCTGACAGAAAA 58.851 45.455 29.27 0.00 0.00 2.29
332 333 2.553028 GGCCCAACAGATCTGACAGAAA 60.553 50.000 29.27 0.00 0.00 2.52
333 334 1.003580 GGCCCAACAGATCTGACAGAA 59.996 52.381 29.27 0.00 0.00 3.02
334 335 0.615331 GGCCCAACAGATCTGACAGA 59.385 55.000 29.27 7.80 0.00 3.41
335 336 0.325933 TGGCCCAACAGATCTGACAG 59.674 55.000 29.27 16.45 0.00 3.51
336 337 0.325933 CTGGCCCAACAGATCTGACA 59.674 55.000 29.27 14.90 40.97 3.58
337 338 0.393537 CCTGGCCCAACAGATCTGAC 60.394 60.000 29.27 11.86 40.97 3.51
338 339 1.993653 CCTGGCCCAACAGATCTGA 59.006 57.895 29.27 3.73 40.97 3.27
339 340 1.751927 GCCTGGCCCAACAGATCTG 60.752 63.158 21.37 21.37 40.97 2.90
340 341 1.578215 ATGCCTGGCCCAACAGATCT 61.578 55.000 17.53 0.00 40.97 2.75
341 342 1.076485 ATGCCTGGCCCAACAGATC 60.076 57.895 17.53 0.00 40.97 2.75
342 343 1.076485 GATGCCTGGCCCAACAGAT 60.076 57.895 17.53 0.00 40.97 2.90
343 344 1.866483 ATGATGCCTGGCCCAACAGA 61.866 55.000 17.53 0.00 40.97 3.41
344 345 1.380785 ATGATGCCTGGCCCAACAG 60.381 57.895 17.53 0.00 38.21 3.16
345 346 1.683025 CATGATGCCTGGCCCAACA 60.683 57.895 17.53 11.03 0.00 3.33
346 347 1.669999 GACATGATGCCTGGCCCAAC 61.670 60.000 17.53 5.45 0.00 3.77
347 348 1.380246 GACATGATGCCTGGCCCAA 60.380 57.895 17.53 1.01 0.00 4.12
348 349 1.866483 AAGACATGATGCCTGGCCCA 61.866 55.000 17.53 14.49 0.00 5.36
349 350 1.076485 AAGACATGATGCCTGGCCC 60.076 57.895 17.53 8.74 0.00 5.80
350 351 0.106819 AGAAGACATGATGCCTGGCC 60.107 55.000 17.53 0.00 0.00 5.36
351 352 1.674962 GAAGAAGACATGATGCCTGGC 59.325 52.381 12.87 12.87 0.00 4.85
352 353 3.278668 AGAAGAAGACATGATGCCTGG 57.721 47.619 0.00 0.00 0.00 4.45
353 354 3.626670 GGAAGAAGAAGACATGATGCCTG 59.373 47.826 0.00 0.00 0.00 4.85
354 355 3.522750 AGGAAGAAGAAGACATGATGCCT 59.477 43.478 0.00 0.00 0.00 4.75
355 356 3.876320 GAGGAAGAAGAAGACATGATGCC 59.124 47.826 0.00 0.00 0.00 4.40
356 357 3.876320 GGAGGAAGAAGAAGACATGATGC 59.124 47.826 0.00 0.00 0.00 3.91
357 358 5.095145 TGGAGGAAGAAGAAGACATGATG 57.905 43.478 0.00 0.00 0.00 3.07
358 359 5.495640 GTTGGAGGAAGAAGAAGACATGAT 58.504 41.667 0.00 0.00 0.00 2.45
359 360 4.263068 GGTTGGAGGAAGAAGAAGACATGA 60.263 45.833 0.00 0.00 0.00 3.07
360 361 4.006319 GGTTGGAGGAAGAAGAAGACATG 58.994 47.826 0.00 0.00 0.00 3.21
361 362 3.652869 TGGTTGGAGGAAGAAGAAGACAT 59.347 43.478 0.00 0.00 0.00 3.06
362 363 3.045634 TGGTTGGAGGAAGAAGAAGACA 58.954 45.455 0.00 0.00 0.00 3.41
363 364 3.403968 GTGGTTGGAGGAAGAAGAAGAC 58.596 50.000 0.00 0.00 0.00 3.01
364 365 2.037251 CGTGGTTGGAGGAAGAAGAAGA 59.963 50.000 0.00 0.00 0.00 2.87
365 366 2.224305 ACGTGGTTGGAGGAAGAAGAAG 60.224 50.000 0.00 0.00 0.00 2.85
366 367 1.766496 ACGTGGTTGGAGGAAGAAGAA 59.234 47.619 0.00 0.00 0.00 2.52
367 368 1.070134 CACGTGGTTGGAGGAAGAAGA 59.930 52.381 7.95 0.00 0.00 2.87
368 369 1.070134 TCACGTGGTTGGAGGAAGAAG 59.930 52.381 17.00 0.00 0.00 2.85
369 370 1.124780 TCACGTGGTTGGAGGAAGAA 58.875 50.000 17.00 0.00 0.00 2.52
370 371 1.124780 TTCACGTGGTTGGAGGAAGA 58.875 50.000 17.00 0.00 0.00 2.87
371 372 1.873591 CTTTCACGTGGTTGGAGGAAG 59.126 52.381 17.00 0.00 0.00 3.46
372 373 1.487142 TCTTTCACGTGGTTGGAGGAA 59.513 47.619 17.00 0.00 0.00 3.36
373 374 1.070134 CTCTTTCACGTGGTTGGAGGA 59.930 52.381 17.00 4.23 0.00 3.71
374 375 1.512926 CTCTTTCACGTGGTTGGAGG 58.487 55.000 17.00 0.00 0.00 4.30
375 376 1.070134 TCCTCTTTCACGTGGTTGGAG 59.930 52.381 17.00 16.38 0.00 3.86
376 377 1.124780 TCCTCTTTCACGTGGTTGGA 58.875 50.000 17.00 13.15 0.00 3.53
377 378 1.806542 CATCCTCTTTCACGTGGTTGG 59.193 52.381 17.00 11.09 0.00 3.77
378 379 1.197721 GCATCCTCTTTCACGTGGTTG 59.802 52.381 17.00 4.94 0.00 3.77
379 380 1.072331 AGCATCCTCTTTCACGTGGTT 59.928 47.619 17.00 0.00 0.00 3.67
380 381 0.687354 AGCATCCTCTTTCACGTGGT 59.313 50.000 17.00 0.00 0.00 4.16
381 382 1.466167 CAAGCATCCTCTTTCACGTGG 59.534 52.381 17.00 0.00 0.00 4.94
382 383 1.466167 CCAAGCATCCTCTTTCACGTG 59.534 52.381 9.94 9.94 0.00 4.49
383 384 1.072331 ACCAAGCATCCTCTTTCACGT 59.928 47.619 0.00 0.00 0.00 4.49
384 385 1.734465 GACCAAGCATCCTCTTTCACG 59.266 52.381 0.00 0.00 0.00 4.35
385 386 1.734465 CGACCAAGCATCCTCTTTCAC 59.266 52.381 0.00 0.00 0.00 3.18
386 387 1.623311 TCGACCAAGCATCCTCTTTCA 59.377 47.619 0.00 0.00 0.00 2.69
387 388 2.386661 TCGACCAAGCATCCTCTTTC 57.613 50.000 0.00 0.00 0.00 2.62
388 389 2.237143 TCATCGACCAAGCATCCTCTTT 59.763 45.455 0.00 0.00 0.00 2.52
389 390 1.833630 TCATCGACCAAGCATCCTCTT 59.166 47.619 0.00 0.00 0.00 2.85
390 391 1.489481 TCATCGACCAAGCATCCTCT 58.511 50.000 0.00 0.00 0.00 3.69
391 392 2.159043 TCTTCATCGACCAAGCATCCTC 60.159 50.000 0.00 0.00 0.00 3.71
392 393 1.833630 TCTTCATCGACCAAGCATCCT 59.166 47.619 0.00 0.00 0.00 3.24
393 394 2.315925 TCTTCATCGACCAAGCATCC 57.684 50.000 0.00 0.00 0.00 3.51
405 406 4.275689 TCTCTCTTCAGCTCGATCTTCATC 59.724 45.833 0.00 0.00 0.00 2.92
406 407 4.206375 TCTCTCTTCAGCTCGATCTTCAT 58.794 43.478 0.00 0.00 0.00 2.57
407 408 3.615155 TCTCTCTTCAGCTCGATCTTCA 58.385 45.455 0.00 0.00 0.00 3.02
408 409 4.335315 TCTTCTCTCTTCAGCTCGATCTTC 59.665 45.833 0.00 0.00 0.00 2.87
409 410 4.269183 TCTTCTCTCTTCAGCTCGATCTT 58.731 43.478 0.00 0.00 0.00 2.40
410 411 3.879295 CTCTTCTCTCTTCAGCTCGATCT 59.121 47.826 0.00 0.00 0.00 2.75
411 412 3.548818 GCTCTTCTCTCTTCAGCTCGATC 60.549 52.174 0.00 0.00 0.00 3.69
412 413 2.358898 GCTCTTCTCTCTTCAGCTCGAT 59.641 50.000 0.00 0.00 0.00 3.59
413 414 1.742831 GCTCTTCTCTCTTCAGCTCGA 59.257 52.381 0.00 0.00 0.00 4.04
414 415 1.202290 GGCTCTTCTCTCTTCAGCTCG 60.202 57.143 0.00 0.00 0.00 5.03
415 416 1.136891 GGGCTCTTCTCTCTTCAGCTC 59.863 57.143 0.00 0.00 0.00 4.09
416 417 1.194218 GGGCTCTTCTCTCTTCAGCT 58.806 55.000 0.00 0.00 0.00 4.24
417 418 0.179113 CGGGCTCTTCTCTCTTCAGC 60.179 60.000 0.00 0.00 0.00 4.26
418 419 0.179113 GCGGGCTCTTCTCTCTTCAG 60.179 60.000 0.00 0.00 0.00 3.02
419 420 1.893786 GCGGGCTCTTCTCTCTTCA 59.106 57.895 0.00 0.00 0.00 3.02
420 421 1.226831 CGCGGGCTCTTCTCTCTTC 60.227 63.158 0.00 0.00 0.00 2.87
421 422 2.716017 CCGCGGGCTCTTCTCTCTT 61.716 63.158 20.10 0.00 0.00 2.85
422 423 3.144193 CCGCGGGCTCTTCTCTCT 61.144 66.667 20.10 0.00 0.00 3.10
423 424 4.214327 CCCGCGGGCTCTTCTCTC 62.214 72.222 34.96 0.00 0.00 3.20
424 425 4.761058 TCCCGCGGGCTCTTCTCT 62.761 66.667 39.89 0.00 34.68 3.10
425 426 4.214327 CTCCCGCGGGCTCTTCTC 62.214 72.222 39.89 0.00 34.68 2.87
429 430 4.924187 ATAGCTCCCGCGGGCTCT 62.924 66.667 39.89 34.59 42.32 4.09
430 431 4.365505 GATAGCTCCCGCGGGCTC 62.366 72.222 39.89 30.19 42.32 4.70
434 435 4.044484 CTCCGATAGCTCCCGCGG 62.044 72.222 21.04 21.04 44.83 6.46
435 436 4.044484 CCTCCGATAGCTCCCGCG 62.044 72.222 0.00 0.00 42.32 6.46
436 437 2.913060 ACCTCCGATAGCTCCCGC 60.913 66.667 0.00 0.00 0.00 6.13
437 438 0.896019 ATCACCTCCGATAGCTCCCG 60.896 60.000 0.00 0.00 0.00 5.14
438 439 0.605589 CATCACCTCCGATAGCTCCC 59.394 60.000 0.00 0.00 0.00 4.30
439 440 0.037790 GCATCACCTCCGATAGCTCC 60.038 60.000 0.00 0.00 0.00 4.70
440 441 0.676184 TGCATCACCTCCGATAGCTC 59.324 55.000 0.00 0.00 0.00 4.09
441 442 1.069823 CTTGCATCACCTCCGATAGCT 59.930 52.381 0.00 0.00 0.00 3.32
442 443 1.506493 CTTGCATCACCTCCGATAGC 58.494 55.000 0.00 0.00 0.00 2.97
443 444 1.414181 ACCTTGCATCACCTCCGATAG 59.586 52.381 0.00 0.00 0.00 2.08
444 445 1.138859 CACCTTGCATCACCTCCGATA 59.861 52.381 0.00 0.00 0.00 2.92
445 446 0.107508 CACCTTGCATCACCTCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
446 447 1.191489 TCACCTTGCATCACCTCCGA 61.191 55.000 0.00 0.00 0.00 4.55
447 448 0.107508 ATCACCTTGCATCACCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
448 449 1.673168 GATCACCTTGCATCACCTCC 58.327 55.000 0.00 0.00 0.00 4.30
449 450 1.293924 CGATCACCTTGCATCACCTC 58.706 55.000 0.00 0.00 0.00 3.85
450 451 0.745845 GCGATCACCTTGCATCACCT 60.746 55.000 0.00 0.00 34.05 4.00
451 452 1.723870 GCGATCACCTTGCATCACC 59.276 57.895 0.00 0.00 34.05 4.02
452 453 1.083806 TCGCGATCACCTTGCATCAC 61.084 55.000 3.71 0.00 33.39 3.06
453 454 0.179076 ATCGCGATCACCTTGCATCA 60.179 50.000 17.62 0.00 33.39 3.07
454 455 1.457303 GTATCGCGATCACCTTGCATC 59.543 52.381 27.45 1.05 33.39 3.91
460 461 2.100749 TCATTGTGTATCGCGATCACCT 59.899 45.455 30.71 21.96 0.00 4.00
463 464 3.059166 CCATCATTGTGTATCGCGATCA 58.941 45.455 27.45 19.63 0.00 2.92
497 498 3.323979 TCTGTCACCCTTTAGTGTTCTCC 59.676 47.826 0.00 0.00 38.91 3.71
508 509 3.242867 TCTTCACATCTCTGTCACCCTT 58.757 45.455 0.00 0.00 31.62 3.95
574 581 7.874016 TGCGATTCTCAAACCTACTAAAACTAA 59.126 33.333 0.00 0.00 0.00 2.24
577 584 6.304882 GTGCGATTCTCAAACCTACTAAAAC 58.695 40.000 0.00 0.00 0.00 2.43
582 589 2.607187 CGTGCGATTCTCAAACCTACT 58.393 47.619 0.00 0.00 0.00 2.57
589 596 2.813474 CGGCCGTGCGATTCTCAA 60.813 61.111 19.50 0.00 0.00 3.02
602 609 0.734889 CTGAATCAATCCACACGGCC 59.265 55.000 0.00 0.00 0.00 6.13
605 612 2.674852 CAGACCTGAATCAATCCACACG 59.325 50.000 0.00 0.00 0.00 4.49
615 622 0.463474 GCAGCTCCCAGACCTGAATC 60.463 60.000 0.00 0.00 0.00 2.52
616 623 1.606531 GCAGCTCCCAGACCTGAAT 59.393 57.895 0.00 0.00 0.00 2.57
617 624 2.596851 GGCAGCTCCCAGACCTGAA 61.597 63.158 0.00 0.00 0.00 3.02
627 634 1.531602 AAAGTTGTGGGGCAGCTCC 60.532 57.895 3.42 3.42 37.69 4.70
628 635 1.109323 ACAAAGTTGTGGGGCAGCTC 61.109 55.000 0.00 0.00 40.49 4.09
629 636 0.184933 TACAAAGTTGTGGGGCAGCT 59.815 50.000 6.94 0.00 42.31 4.24
630 637 1.000274 CTTACAAAGTTGTGGGGCAGC 60.000 52.381 6.94 0.00 42.31 5.25
631 638 1.613437 CCTTACAAAGTTGTGGGGCAG 59.387 52.381 6.94 0.00 42.31 4.85
632 639 1.063567 ACCTTACAAAGTTGTGGGGCA 60.064 47.619 16.73 0.00 42.31 5.36
633 640 1.339929 CACCTTACAAAGTTGTGGGGC 59.660 52.381 16.73 0.00 42.31 5.80
634 641 1.960689 CCACCTTACAAAGTTGTGGGG 59.039 52.381 16.73 14.71 42.16 4.96
635 642 2.884639 CTCCACCTTACAAAGTTGTGGG 59.115 50.000 6.94 10.66 45.16 4.61
636 643 3.315191 CACTCCACCTTACAAAGTTGTGG 59.685 47.826 6.94 3.29 46.19 4.17
637 644 3.243068 GCACTCCACCTTACAAAGTTGTG 60.243 47.826 6.94 0.00 42.31 3.33
638 645 2.949644 GCACTCCACCTTACAAAGTTGT 59.050 45.455 1.75 1.75 44.86 3.32
639 646 2.293399 GGCACTCCACCTTACAAAGTTG 59.707 50.000 0.00 0.00 0.00 3.16
656 663 8.810652 TTTTATTACTCAAAATCAAGTGGCAC 57.189 30.769 10.29 10.29 0.00 5.01
713 726 6.239317 CCATCGATTCCAGTGGATAAGTTCTA 60.239 42.308 14.00 0.00 33.53 2.10
719 732 3.967326 ACTCCATCGATTCCAGTGGATAA 59.033 43.478 14.00 0.00 39.81 1.75
840 862 4.503817 CCAGTGATTGGTTGAGACTTGAGA 60.504 45.833 0.00 0.00 42.41 3.27
841 863 3.750130 CCAGTGATTGGTTGAGACTTGAG 59.250 47.826 0.00 0.00 42.41 3.02
842 864 3.743521 CCAGTGATTGGTTGAGACTTGA 58.256 45.455 0.00 0.00 42.41 3.02
843 865 4.155462 CATCCAGTGATTGGTTGAGACTTG 59.845 45.833 0.00 0.00 45.68 3.16
844 866 4.330250 CATCCAGTGATTGGTTGAGACTT 58.670 43.478 0.00 0.00 45.68 3.01
845 867 3.307975 CCATCCAGTGATTGGTTGAGACT 60.308 47.826 6.62 0.00 45.68 3.24
846 868 3.012518 CCATCCAGTGATTGGTTGAGAC 58.987 50.000 6.62 0.00 45.68 3.36
887 909 3.296322 AGTCTTCTCAAGTCTTCGCAG 57.704 47.619 0.00 0.00 0.00 5.18
888 910 3.068165 TCAAGTCTTCTCAAGTCTTCGCA 59.932 43.478 0.00 0.00 35.24 5.10
889 911 3.643763 TCAAGTCTTCTCAAGTCTTCGC 58.356 45.455 0.00 0.00 35.24 4.70
890 912 8.472683 AAATATCAAGTCTTCTCAAGTCTTCG 57.527 34.615 0.00 0.00 35.24 3.79
892 914 9.784531 TGAAAATATCAAGTCTTCTCAAGTCTT 57.215 29.630 0.00 0.00 37.36 3.01
948 970 4.190001 GGAAGTAGGAACGGAAGGAAATC 58.810 47.826 0.00 0.00 0.00 2.17
959 981 5.163982 CGACGAAGAATTTGGAAGTAGGAAC 60.164 44.000 0.00 0.00 32.29 3.62
962 984 4.243270 ACGACGAAGAATTTGGAAGTAGG 58.757 43.478 0.00 0.00 32.29 3.18
964 986 5.130292 AGACGACGAAGAATTTGGAAGTA 57.870 39.130 0.00 0.00 32.29 2.24
965 987 3.988517 GAGACGACGAAGAATTTGGAAGT 59.011 43.478 0.00 0.00 32.29 3.01
969 991 2.000447 GGGAGACGACGAAGAATTTGG 59.000 52.381 0.00 0.00 32.29 3.28
973 995 0.613853 TGGGGGAGACGACGAAGAAT 60.614 55.000 0.00 0.00 0.00 2.40
975 997 0.828762 TTTGGGGGAGACGACGAAGA 60.829 55.000 0.00 0.00 0.00 2.87
984 1006 4.412843 GTTCCATTTAGTTTTGGGGGAGA 58.587 43.478 0.00 0.00 33.62 3.71
985 1007 3.513912 GGTTCCATTTAGTTTTGGGGGAG 59.486 47.826 0.00 0.00 33.62 4.30
986 1008 3.512496 GGTTCCATTTAGTTTTGGGGGA 58.488 45.455 0.00 0.00 33.62 4.81
987 1009 2.232696 CGGTTCCATTTAGTTTTGGGGG 59.767 50.000 0.00 0.00 33.62 5.40
988 1010 3.158676 TCGGTTCCATTTAGTTTTGGGG 58.841 45.455 0.00 0.00 33.62 4.96
990 1012 4.076394 TCCTCGGTTCCATTTAGTTTTGG 58.924 43.478 0.00 0.00 0.00 3.28
991 1013 5.001232 TCTCCTCGGTTCCATTTAGTTTTG 58.999 41.667 0.00 0.00 0.00 2.44
999 1040 0.613853 TCGGTCTCCTCGGTTCCATT 60.614 55.000 0.00 0.00 0.00 3.16
1005 1046 1.977544 CTTGGTCGGTCTCCTCGGT 60.978 63.158 0.00 0.00 0.00 4.69
1063 1116 2.743928 CTCTTGCAGGCGGGTGAC 60.744 66.667 0.00 0.00 0.00 3.67
1077 1130 1.537397 TGCCCACAAGAGCTCCTCT 60.537 57.895 10.93 0.00 43.37 3.69
1101 1154 2.430921 CGAGGTGACGTGCTGGAC 60.431 66.667 0.00 0.00 0.00 4.02
1105 1158 4.702081 GTCGCGAGGTGACGTGCT 62.702 66.667 10.24 0.00 42.37 4.40
1173 1226 4.154347 CAGGCCCAGAGAGCGTCC 62.154 72.222 0.00 0.00 0.00 4.79
1179 1232 1.681666 CAGAAAGCAGGCCCAGAGA 59.318 57.895 0.00 0.00 0.00 3.10
1180 1233 2.045131 GCAGAAAGCAGGCCCAGAG 61.045 63.158 0.00 0.00 44.79 3.35
1237 1290 2.125552 CTTCCTGCATGGCGTCGA 60.126 61.111 0.00 0.00 35.26 4.20
1238 1291 1.699656 CTTCTTCCTGCATGGCGTCG 61.700 60.000 0.00 0.00 35.26 5.12
1240 1293 1.377725 CCTTCTTCCTGCATGGCGT 60.378 57.895 0.00 0.00 35.26 5.68
1241 1294 1.078214 TCCTTCTTCCTGCATGGCG 60.078 57.895 0.00 0.00 35.26 5.69
1300 1362 1.026182 ATACGTACCACGAGTCCGCA 61.026 55.000 5.61 0.00 46.05 5.69
1329 1395 1.450312 GTTGAGCTGGGTGATCCGG 60.450 63.158 0.00 0.00 44.90 5.14
1343 1409 5.467063 GCCCGAAAACCAAATTTATTGTTGA 59.533 36.000 0.00 0.00 0.00 3.18
1350 1416 6.591750 TGATTAGCCCGAAAACCAAATTTA 57.408 33.333 0.00 0.00 0.00 1.40
1374 1443 0.894835 TGCTCTGGATGCGACAAGTA 59.105 50.000 0.00 0.00 0.00 2.24
1375 1444 0.251354 ATGCTCTGGATGCGACAAGT 59.749 50.000 0.00 0.00 0.00 3.16
1376 1445 0.656259 CATGCTCTGGATGCGACAAG 59.344 55.000 0.00 0.00 0.00 3.16
1377 1446 0.036105 ACATGCTCTGGATGCGACAA 60.036 50.000 0.00 0.00 0.00 3.18
1378 1447 0.741927 CACATGCTCTGGATGCGACA 60.742 55.000 0.00 0.00 0.00 4.35
1486 2757 4.966805 AGAATAACGGAATGAGGGAAGGTA 59.033 41.667 0.00 0.00 0.00 3.08
1487 2758 3.780850 AGAATAACGGAATGAGGGAAGGT 59.219 43.478 0.00 0.00 0.00 3.50
1488 2759 4.130118 CAGAATAACGGAATGAGGGAAGG 58.870 47.826 0.00 0.00 0.00 3.46
1497 2768 5.721232 ACTCGAAGAACAGAATAACGGAAT 58.279 37.500 0.00 0.00 34.09 3.01
1506 2777 3.120792 CAACGGAACTCGAAGAACAGAA 58.879 45.455 0.00 0.00 42.43 3.02
1512 2783 0.944311 GCTGCAACGGAACTCGAAGA 60.944 55.000 0.00 0.00 42.43 2.87
1516 2787 1.687494 GCTAGCTGCAACGGAACTCG 61.687 60.000 7.70 0.00 42.61 4.18
1586 2881 6.106648 TGACTCAGTCATGGATCATTATCC 57.893 41.667 2.36 0.00 43.56 2.59
1656 3261 6.017605 CACTGATGATGGGAACTAATAACTGC 60.018 42.308 0.00 0.00 0.00 4.40
1657 3262 7.275183 TCACTGATGATGGGAACTAATAACTG 58.725 38.462 0.00 0.00 0.00 3.16
1658 3263 7.437713 TCACTGATGATGGGAACTAATAACT 57.562 36.000 0.00 0.00 0.00 2.24
1659 3264 6.203723 GCTCACTGATGATGGGAACTAATAAC 59.796 42.308 0.00 0.00 33.22 1.89
1660 3265 6.100279 AGCTCACTGATGATGGGAACTAATAA 59.900 38.462 0.00 0.00 33.22 1.40
1662 3267 4.411540 AGCTCACTGATGATGGGAACTAAT 59.588 41.667 0.00 0.00 33.22 1.73
1681 3331 4.676546 AGAGAACAAAAGTTGCAAAGCTC 58.323 39.130 0.00 0.00 0.00 4.09
1701 3351 2.480037 CGCTACAAAATGTGCACAGAGA 59.520 45.455 25.84 0.48 0.00 3.10
1726 3376 5.615289 AGTTGCACCCATTTAGCTAGATAG 58.385 41.667 0.00 0.00 0.00 2.08
1727 3377 5.630415 AGTTGCACCCATTTAGCTAGATA 57.370 39.130 0.00 0.00 0.00 1.98
1728 3378 4.510167 AGTTGCACCCATTTAGCTAGAT 57.490 40.909 0.00 0.00 0.00 1.98
1729 3379 4.301072 AAGTTGCACCCATTTAGCTAGA 57.699 40.909 0.00 0.00 0.00 2.43
1730 3380 6.699575 ATTAAGTTGCACCCATTTAGCTAG 57.300 37.500 0.00 0.00 0.00 3.42
1731 3381 8.629158 CATAATTAAGTTGCACCCATTTAGCTA 58.371 33.333 0.00 0.00 0.00 3.32
1732 3382 7.341769 TCATAATTAAGTTGCACCCATTTAGCT 59.658 33.333 0.00 0.00 0.00 3.32
1733 3383 7.488322 TCATAATTAAGTTGCACCCATTTAGC 58.512 34.615 0.00 0.00 0.00 3.09
1784 3434 8.292448 GTCGAATACGTATAGGTTTAGGATTCA 58.708 37.037 8.83 0.00 40.69 2.57
1804 3454 4.015084 TCTCGGAAAACCTAGAGTCGAAT 58.985 43.478 0.00 0.00 32.90 3.34
1854 3504 2.823747 TGTATCTTGCCGCGGATATACT 59.176 45.455 33.48 10.66 0.00 2.12
1952 3602 2.700773 GGCCGTAGTAACCGTCGGT 61.701 63.158 12.23 12.23 44.07 4.69
1969 3619 0.322456 TCTGGACCGGCAATTCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
1971 3621 1.614317 CCTTCTGGACCGGCAATTCTT 60.614 52.381 0.00 0.00 34.57 2.52
2073 3723 1.886313 CGAGGAAGCGCTGCATGAT 60.886 57.895 19.31 0.00 0.00 2.45
2149 3799 2.154854 AGGACACATCGCCATATTCG 57.845 50.000 0.00 0.00 0.00 3.34
2153 3803 3.659850 CGAAGGACACATCGCCATA 57.340 52.632 0.00 0.00 31.71 2.74
2188 3838 4.040461 AGACCGTTCTTCCTTCTCAAATCA 59.960 41.667 0.00 0.00 0.00 2.57
2260 3910 4.135153 CTGGCTCGGGACTCGGTG 62.135 72.222 0.00 0.00 39.77 4.94
2261 3911 4.680537 ACTGGCTCGGGACTCGGT 62.681 66.667 0.00 0.00 39.77 4.69
2264 3914 3.462678 GGGACTGGCTCGGGACTC 61.463 72.222 0.00 0.00 0.00 3.36
2267 3917 4.458829 ATCGGGACTGGCTCGGGA 62.459 66.667 1.44 0.00 42.04 5.14
2268 3918 4.227134 CATCGGGACTGGCTCGGG 62.227 72.222 1.44 0.00 42.04 5.14
2281 3931 2.509336 GTGTCGCCCTGTCCATCG 60.509 66.667 0.00 0.00 0.00 3.84
2283 3933 2.050836 TTGTGTGTCGCCCTGTCCAT 62.051 55.000 0.00 0.00 0.00 3.41
2293 3943 1.172180 AGCCATTGGGTTGTGTGTCG 61.172 55.000 0.36 0.00 36.17 4.35
2324 3975 1.270305 ACAACACTCATCACTCGGTGG 60.270 52.381 4.52 0.00 33.87 4.61
2337 3989 2.098934 TGATGAGCGCAAAAACAACACT 59.901 40.909 11.47 0.00 0.00 3.55
2362 4014 8.659527 TGGGATAATTATCTGATTTAGACAGCA 58.340 33.333 21.80 0.00 38.49 4.41
2414 4066 8.981164 TCGCATTCGTTAGTCATTAGTGACAAC 61.981 40.741 19.24 17.59 45.36 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.