AutoCloner

Multiple sequence alignment - TraesCS7A01G062500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G062500	chr7A	100.000	4187	0	0	1	4187	31079423	31075237	0.000000e+00	7733.0
1	TraesCS7A01G062500	chr7A	83.128	972	121	23	1532	2492	40100762	40099823	0.000000e+00	846.0
2	TraesCS7A01G062500	chr7A	87.885	487	48	5	2785	3263	40099806	40099323	2.830000e-156	562.0
3	TraesCS7A01G062500	chr7A	85.403	459	63	3	2555	3012	116594739	116594284	1.360000e-129	473.0
4	TraesCS7A01G062500	chr7A	100.000	36	0	0	102	137	31090114	31090079	2.700000e-07	67.6
5	TraesCS7A01G062500	chr4A	96.079	3290	104	14	913	4187	698050419	698053698	0.000000e+00	5337.0
6	TraesCS7A01G062500	chr4A	85.462	736	53	22	1	725	697961250	697961942	0.000000e+00	717.0
7	TraesCS7A01G062500	chr4A	87.195	492	47	8	2380	2862	646591402	646590918	2.850000e-151	545.0
8	TraesCS7A01G062500	chr4A	81.229	602	88	14	720	1307	697962094	697962684	2.950000e-126	462.0
9	TraesCS7A01G062500	chr7D	95.859	3043	94	20	1172	4187	30504800	30501763	0.000000e+00	4892.0
10	TraesCS7A01G062500	chr7D	95.159	599	27	2	143	740	30506169	30505572	0.000000e+00	944.0
11	TraesCS7A01G062500	chr7D	79.548	885	130	22	1	881	30830272	30829435	6.030000e-163	584.0
12	TraesCS7A01G062500	chr7D	85.114	571	60	11	1	560	30770397	30769841	1.020000e-155	560.0
13	TraesCS7A01G062500	chr7D	90.465	430	19	6	737	1159	30505369	30504955	7.910000e-152	547.0
14	TraesCS7A01G062500	chr7D	84.431	501	72	5	2555	3054	111408999	111408504	4.870000e-134	488.0
15	TraesCS7A01G062500	chr7D	79.450	691	112	22	3512	4187	111279236	111278561	2.950000e-126	462.0
16	TraesCS7A01G062500	chr7D	82.574	505	78	9	2555	3054	111315206	111314707	1.790000e-118	436.0
17	TraesCS7A01G062500	chr7D	84.741	367	55	1	1528	1894	40196872	40196507	2.380000e-97	366.0
18	TraesCS7A01G062500	chr7D	94.468	235	13	0	3942	4176	30470604	30470370	3.080000e-96	363.0
19	TraesCS7A01G062500	chr7D	77.634	465	78	20	3738	4187	111404710	111404257	4.150000e-65	259.0
20	TraesCS7A01G062500	chr7D	77.340	406	67	17	3738	4127	111221867	111221471	2.530000e-52	217.0
21	TraesCS7A01G062500	chr7D	91.724	145	11	1	1	145	30519540	30519397	2.550000e-47	200.0
22	TraesCS7A01G062500	chr7D	87.500	168	21	0	1890	2057	40195897	40195730	1.190000e-45	195.0
23	TraesCS7A01G062500	chr7D	79.926	269	30	11	2964	3229	111406842	111406595	4.300000e-40	176.0
24	TraesCS7A01G062500	chr7D	86.061	165	18	4	3102	3263	111400059	111399897	5.570000e-39	172.0
25	TraesCS7A01G062500	chr7D	95.556	45	2	0	3149	3193	111313649	111313605	5.810000e-09	73.1
26	TraesCS7A01G062500	chr7B	85.457	777	95	11	1877	2643	71064183	71063415	0.000000e+00	793.0
27	TraesCS7A01G062500	chr7B	80.515	544	81	14	2127	2668	71136832	71136312	1.090000e-105	394.0
28	TraesCS7A01G062500	chr7B	82.911	316	49	4	2733	3048	71063410	71063100	3.190000e-71	279.0
29	TraesCS7A01G062500	chr7B	88.372	172	16	4	4019	4187	70872194	70872024	1.970000e-48	204.0
30	TraesCS7A01G062500	chr7B	89.600	125	11	2	3106	3229	70866491	70866368	1.560000e-34	158.0
31	TraesCS7A01G062500	chr1D	89.899	594	52	2	2191	2777	491981600	491982192	0.000000e+00	758.0
32	TraesCS7A01G062500	chr1D	85.253	217	29	3	2924	3139	491982201	491982415	1.960000e-53	220.0
33	TraesCS7A01G062500	chr1B	83.763	776	74	12	1896	2659	684787044	684787779	0.000000e+00	688.0
34	TraesCS7A01G062500	chrUn	95.238	42	2	0	96	137	234886658	234886699	2.700000e-07	67.6
35	TraesCS7A01G062500	chrUn	100.000	36	0	0	102	137	357463920	357463885	2.700000e-07	67.6
36	TraesCS7A01G062500	chrUn	100.000	36	0	0	102	137	357466057	357466022	2.700000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G062500	chr7A	31075237	31079423	4186	True	7733.000000	7733	100.000000	1	4187	1	chr7A.!!$R1	4186
1	TraesCS7A01G062500	chr7A	40099323	40100762	1439	True	704.000000	846	85.506500	1532	3263	2	chr7A.!!$R4	1731
2	TraesCS7A01G062500	chr4A	698050419	698053698	3279	False	5337.000000	5337	96.079000	913	4187	1	chr4A.!!$F1	3274
3	TraesCS7A01G062500	chr4A	697961250	697962684	1434	False	589.500000	717	83.345500	1	1307	2	chr4A.!!$F2	1306
4	TraesCS7A01G062500	chr7D	30501763	30506169	4406	True	2127.666667	4892	93.827667	143	4187	3	chr7D.!!$R8	4044
5	TraesCS7A01G062500	chr7D	30829435	30830272	837	True	584.000000	584	79.548000	1	881	1	chr7D.!!$R4	880
6	TraesCS7A01G062500	chr7D	30769841	30770397	556	True	560.000000	560	85.114000	1	560	1	chr7D.!!$R3	559
7	TraesCS7A01G062500	chr7D	111278561	111279236	675	True	462.000000	462	79.450000	3512	4187	1	chr7D.!!$R6	675
8	TraesCS7A01G062500	chr7D	111404257	111408999	4742	True	307.666667	488	80.663667	2555	4187	3	chr7D.!!$R11	1632
9	TraesCS7A01G062500	chr7D	40195730	40196872	1142	True	280.500000	366	86.120500	1528	2057	2	chr7D.!!$R9	529
10	TraesCS7A01G062500	chr7D	111313605	111315206	1601	True	254.550000	436	89.065000	2555	3193	2	chr7D.!!$R10	638
11	TraesCS7A01G062500	chr7B	71063100	71064183	1083	True	536.000000	793	84.184000	1877	3048	2	chr7B.!!$R4	1171
12	TraesCS7A01G062500	chr7B	71136312	71136832	520	True	394.000000	394	80.515000	2127	2668	1	chr7B.!!$R3	541
13	TraesCS7A01G062500	chr1D	491981600	491982415	815	False	489.000000	758	87.576000	2191	3139	2	chr1D.!!$F1	948
14	TraesCS7A01G062500	chr1B	684787044	684787779	735	False	688.000000	688	83.763000	1896	2659	1	chr1B.!!$F1	763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
455	487	0.250553	CCCCCACGCTCAACTGTTAA	60.251	55.0	0.0	0.0	0.00	2.01	F
1653	2239	0.758734	TCTTTGATCGGATGGCGGAT	59.241	50.0	0.0	0.0	36.86	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2025	3243	2.036217	CTGCATCCTAGAGAAGAGCCTG	59.964	54.545	0.0	0.0	0.0	4.85	R
3407	6467	0.038310	AAAAGGCACCTGCTAGACCC	59.962	55.000	0.0	0.0	41.7	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	1.978617	AGGCAACCGGAAGCAATGG	60.979	57.895	20.93	0.00	37.17	3.16
50	51	0.313672	TCCGTGTGGCAAAAAGATGC	59.686	50.000	0.00	0.00	45.67	3.91
63	64	5.107607	GCAAAAAGATGCACAATGACTTCTG	60.108	40.000	0.00	0.00	45.70	3.02
88	96	3.737047	CGTGTAGTATGGACCTTTCGCAT	60.737	47.826	0.00	0.00	0.00	4.73
100	108	3.754850	ACCTTTCGCATGTTTACTTACCC	59.245	43.478	0.00	0.00	0.00	3.69
127	135	6.493115	TGCAATTTTCTCTTGGGATTGAACTA	59.507	34.615	0.00	0.00	31.15	2.24
207	216	4.690748	ACATAGACCACATGAGAAAACACG	59.309	41.667	0.00	0.00	0.00	4.49
357	387	1.153369	CCATCGACCACCTCGCATT	60.153	57.895	0.00	0.00	42.62	3.56
364	394	0.400213	ACCACCTCGCATTCCTGAAA	59.600	50.000	0.00	0.00	0.00	2.69
431	461	3.294214	CCTCAAGCTTTGCCCATAAGAT	58.706	45.455	0.00	0.00	0.00	2.40
433	463	4.276926	CCTCAAGCTTTGCCCATAAGATAC	59.723	45.833	0.00	0.00	0.00	2.24
455	487	0.250553	CCCCCACGCTCAACTGTTAA	60.251	55.000	0.00	0.00	0.00	2.01
488	520	1.576356	GGTAGAGATGCTCGCCAAAG	58.424	55.000	0.00	0.00	35.36	2.77
491	524	3.243907	GGTAGAGATGCTCGCCAAAGTAT	60.244	47.826	0.00	0.00	35.36	2.12
492	525	4.022242	GGTAGAGATGCTCGCCAAAGTATA	60.022	45.833	0.00	0.00	35.36	1.47
493	526	4.250116	AGAGATGCTCGCCAAAGTATAG	57.750	45.455	0.00	0.00	35.36	1.31
494	527	3.639094	AGAGATGCTCGCCAAAGTATAGT	59.361	43.478	0.00	0.00	35.36	2.12
495	528	4.827835	AGAGATGCTCGCCAAAGTATAGTA	59.172	41.667	0.00	0.00	35.36	1.82
496	529	5.302059	AGAGATGCTCGCCAAAGTATAGTAA	59.698	40.000	0.00	0.00	35.36	2.24
497	530	5.290386	AGATGCTCGCCAAAGTATAGTAAC	58.710	41.667	0.00	0.00	0.00	2.50
498	531	4.730949	TGCTCGCCAAAGTATAGTAACT	57.269	40.909	0.00	0.00	0.00	2.24
499	532	5.840243	TGCTCGCCAAAGTATAGTAACTA	57.160	39.130	0.00	0.00	0.00	2.24
500	533	6.211587	TGCTCGCCAAAGTATAGTAACTAA	57.788	37.500	0.00	0.00	0.00	2.24
501	534	6.812998	TGCTCGCCAAAGTATAGTAACTAAT	58.187	36.000	0.00	0.00	0.00	1.73
502	535	6.921857	TGCTCGCCAAAGTATAGTAACTAATC	59.078	38.462	0.00	0.00	0.00	1.75
503	536	6.921857	GCTCGCCAAAGTATAGTAACTAATCA	59.078	38.462	0.00	0.00	0.00	2.57
708	763	7.541783	CACAAATAACATGAACATCGGTCAAAT	59.458	33.333	0.00	0.00	0.00	2.32
763	1180	5.968528	TTCACCACCACAATTTATACACC	57.031	39.130	0.00	0.00	0.00	4.16
873	1303	6.419413	GCATTGAGACACCGAACATTTTAAAA	59.581	34.615	2.51	2.51	0.00	1.52
881	1311	8.964420	ACACCGAACATTTTAAAATAGACATG	57.036	30.769	12.98	9.88	0.00	3.21
882	1312	8.026607	ACACCGAACATTTTAAAATAGACATGG	58.973	33.333	12.98	12.05	0.00	3.66
884	1314	6.978080	CCGAACATTTTAAAATAGACATGGGG	59.022	38.462	12.98	1.05	0.00	4.96
885	1315	6.978080	CGAACATTTTAAAATAGACATGGGGG	59.022	38.462	12.98	0.38	0.00	5.40
887	1317	8.442660	AACATTTTAAAATAGACATGGGGGAA	57.557	30.769	12.98	0.00	0.00	3.97
889	1319	6.538945	TTTTAAAATAGACATGGGGGAAGC	57.461	37.500	0.00	0.00	0.00	3.86
890	1320	2.755952	AAATAGACATGGGGGAAGCC	57.244	50.000	0.00	0.00	0.00	4.35
892	1322	2.815357	ATAGACATGGGGGAAGCCTA	57.185	50.000	0.00	0.00	0.00	3.93
915	1353	3.857052	AGATTCGTGCGGAATAACTTGA	58.143	40.909	3.11	0.00	45.33	3.02
941	1379	2.514592	GCGGATGCTTAGCTGCCA	60.515	61.111	5.60	0.00	38.39	4.92
950	1388	1.676916	GCTTAGCTGCCATGTGACTGA	60.677	52.381	0.00	0.00	0.00	3.41
1132	1575	4.776322	CCTTCGCCGCCATGTCCA	62.776	66.667	0.00	0.00	0.00	4.02
1170	1613	2.932234	CGTCCTCCGCACCTTCACT	61.932	63.158	0.00	0.00	0.00	3.41
1446	2032	2.506061	CCGGATGCAGGAGGAGGAG	61.506	68.421	0.00	0.00	0.00	3.69
1473	2059	4.477975	CCCGACTCCGTCACGCTC	62.478	72.222	0.00	0.00	32.09	5.03
1648	2234	1.303309	GGCTGTCTTTGATCGGATGG	58.697	55.000	0.00	0.00	0.00	3.51
1653	2239	0.758734	TCTTTGATCGGATGGCGGAT	59.241	50.000	0.00	0.00	36.86	4.18
2025	3243	2.027745	TGGAAGGTCAGAAGATGCAGTC	60.028	50.000	0.00	0.00	0.00	3.51
2142	3375	1.133575	CAGGCAAGATGGATCCATGGT	60.134	52.381	32.05	15.75	36.70	3.55
2376	3615	1.734477	CAGAGTGCCCAACGAGACG	60.734	63.158	0.00	0.00	0.00	4.18
2499	3738	3.307059	GGATGGAGCACTATGGTACCATC	60.307	52.174	30.63	22.11	43.54	3.51
2586	3825	3.560068	CGGATCCTGGCATTAGTGTTTAC	59.440	47.826	10.75	0.00	0.00	2.01
2863	4117	2.281761	ACCAGCAGGCAAAGGACG	60.282	61.111	0.00	0.00	39.06	4.79
2914	4168	4.298626	AGAGATCAAAGCTGTGGGGTATA	58.701	43.478	3.47	0.00	0.00	1.47
2994	4248	1.576421	CCACAGCGAGAAACTTGCC	59.424	57.895	7.29	0.00	41.50	4.52
3317	6344	9.512588	AATTGGAAGATATATTAAGGCAGTCAG	57.487	33.333	0.00	0.00	0.00	3.51
3318	6345	7.618019	TGGAAGATATATTAAGGCAGTCAGT	57.382	36.000	0.00	0.00	0.00	3.41
3319	6346	7.671302	TGGAAGATATATTAAGGCAGTCAGTC	58.329	38.462	0.00	0.00	0.00	3.51
3320	6347	6.809196	GGAAGATATATTAAGGCAGTCAGTCG	59.191	42.308	0.00	0.00	0.00	4.18
3375	6435	9.079833	GTGACCATAATTTCAGATCACAATTTG	57.920	33.333	0.00	0.00	36.00	2.32
3396	6456	5.378230	TGAGATCTGAATTACCTTGCCAT	57.622	39.130	0.00	0.00	0.00	4.40
3402	6462	6.757897	TCTGAATTACCTTGCCATACTTTG	57.242	37.500	0.00	0.00	0.00	2.77
3407	6467	2.151202	ACCTTGCCATACTTTGTCACG	58.849	47.619	0.00	0.00	0.00	4.35
3427	6487	1.454201	GGTCTAGCAGGTGCCTTTTC	58.546	55.000	0.00	0.00	43.38	2.29
3482	6542	2.765122	GCAGCTCTTAGCCTCTTATGG	58.235	52.381	0.00	0.00	43.77	2.74
3500	6560	3.895232	TGGTCATCTAACCTTCTCAGC	57.105	47.619	0.00	0.00	40.20	4.26
3617	6811	4.522789	AGTTGTTGACCACAGAAAACACTT	59.477	37.500	0.00	0.00	36.48	3.16
3640	6834	9.535878	ACTTCTATTTTATTCTCGTCTGGAATC	57.464	33.333	0.00	0.00	35.40	2.52
3930	8543	4.097135	TCGAAGCTAAGGATCACTTCTCAG	59.903	45.833	0.00	0.00	40.64	3.35
3936	8549	5.068987	GCTAAGGATCACTTCTCAGTCTGAT	59.931	44.000	2.22	0.00	40.64	2.90
3990	8603	2.840038	ACTGTTCTGCTCCATGGACATA	59.160	45.455	11.44	4.44	0.00	2.29
3991	8604	3.264193	ACTGTTCTGCTCCATGGACATAA	59.736	43.478	11.44	10.17	0.00	1.90
4005	8618	3.753272	TGGACATAACAGCTCTCTTTTGC	59.247	43.478	0.00	0.00	0.00	3.68
4151	8766	1.694169	TTCCCCTCCAGCCAGATCC	60.694	63.158	0.00	0.00	0.00	3.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	3.924507	GATGCCATTGCTTCCGGT	58.075	55.556	0.00	0.00	36.05	5.28
28	29	0.313672	TCTTTTTGCCACACGGATGC	59.686	50.000	0.00	0.00	0.00	3.91
33	34	1.130955	GTGCATCTTTTTGCCACACG	58.869	50.000	0.00	0.00	42.06	4.49
34	35	2.222007	TGTGCATCTTTTTGCCACAC	57.778	45.000	0.00	0.00	42.06	3.82
50	51	2.483876	ACACGTCCAGAAGTCATTGTG	58.516	47.619	0.00	0.00	0.00	3.33
63	64	3.733077	CGAAAGGTCCATACTACACGTCC	60.733	52.174	0.00	0.00	0.00	4.79
88	96	7.286775	AGAGAAAATTGCAAGGGTAAGTAAACA	59.713	33.333	4.94	0.00	0.00	2.83
100	108	5.786311	TCAATCCCAAGAGAAAATTGCAAG	58.214	37.500	4.94	0.00	0.00	4.01
127	135	3.448660	GCAACCCTAAAAAGGCATCTCAT	59.551	43.478	0.00	0.00	0.00	2.90
207	216	1.155424	TTCCGACAAGTTGTCCGTGC	61.155	55.000	26.37	6.05	44.20	5.34
246	255	1.506309	TTGCAAGCGCGTGTCTTCAT	61.506	50.000	23.94	0.00	42.97	2.57
357	387	2.879002	TGCAAACGCAATTTTCAGGA	57.121	40.000	0.00	0.00	36.16	3.86
364	394	3.434637	GTCGGAATATGCAAACGCAATT	58.565	40.909	0.00	0.00	44.09	2.32
378	408	0.250513	GTGCAGAGGAAGGTCGGAAT	59.749	55.000	0.00	0.00	0.00	3.01
708	763	3.325425	TCACGGAACAATTAGAGAACCCA	59.675	43.478	0.00	0.00	0.00	4.51
760	1177	4.513692	TGTAGGAGAATTTTTCGTGTGGTG	59.486	41.667	0.00	0.00	34.02	4.17
763	1180	5.679906	CAGTGTAGGAGAATTTTTCGTGTG	58.320	41.667	0.00	0.00	34.02	3.82
801	1229	8.728833	TCTTTCTTCAATTGCATTGTTGTTTTT	58.271	25.926	0.00	0.00	41.02	1.94
802	1230	8.266392	TCTTTCTTCAATTGCATTGTTGTTTT	57.734	26.923	0.00	0.00	41.02	2.43
803	1231	7.846644	TCTTTCTTCAATTGCATTGTTGTTT	57.153	28.000	0.00	0.00	41.02	2.83
873	1303	2.182312	TCTAGGCTTCCCCCATGTCTAT	59.818	50.000	0.00	0.00	0.00	1.98
881	1311	0.682292	CGAATCTCTAGGCTTCCCCC	59.318	60.000	0.00	0.00	0.00	5.40
882	1312	1.069358	CACGAATCTCTAGGCTTCCCC	59.931	57.143	0.00	0.00	0.00	4.81
884	1314	1.859383	GCACGAATCTCTAGGCTTCC	58.141	55.000	0.00	0.00	0.00	3.46
885	1315	1.482278	CGCACGAATCTCTAGGCTTC	58.518	55.000	0.00	0.00	0.00	3.86
887	1317	0.752009	TCCGCACGAATCTCTAGGCT	60.752	55.000	0.00	0.00	0.00	4.58
889	1319	2.802787	ATTCCGCACGAATCTCTAGG	57.197	50.000	0.00	0.00	36.38	3.02
890	1320	4.861210	AGTTATTCCGCACGAATCTCTAG	58.139	43.478	0.00	0.00	40.51	2.43
892	1322	3.802948	AGTTATTCCGCACGAATCTCT	57.197	42.857	0.00	0.00	40.51	3.10
915	1353	2.205074	CTAAGCATCCGCACGAATCTT	58.795	47.619	0.00	0.00	42.27	2.40
941	1379	2.288457	CGTCACAACCTCTCAGTCACAT	60.288	50.000	0.00	0.00	0.00	3.21
950	1388	2.496470	GAGTTATCCCGTCACAACCTCT	59.504	50.000	0.00	0.00	0.00	3.69
1170	1613	1.892819	CGCAGAGCTTGAGGAGGGAA	61.893	60.000	0.00	0.00	0.00	3.97
1648	2234	4.093556	CCAAGAAACAGAGTTCTTATCCGC	59.906	45.833	0.15	0.00	44.25	5.54
1653	2239	5.473504	GGCATTCCAAGAAACAGAGTTCTTA	59.526	40.000	0.15	0.00	44.25	2.10
2025	3243	2.036217	CTGCATCCTAGAGAAGAGCCTG	59.964	54.545	0.00	0.00	0.00	4.85
2499	3738	0.807667	CTCGGCCAAGAAGATCCACG	60.808	60.000	2.24	0.00	0.00	4.94
2586	3825	1.922135	AAGCGCCTAACATTGCACCG	61.922	55.000	2.29	0.00	0.00	4.94
2863	4117	3.193479	AGCTTAGCCAACCTTGCATAAAC	59.807	43.478	0.00	0.00	0.00	2.01
2914	4168	3.641436	TGTATAGAATCAGTGTCCGGCAT	59.359	43.478	0.00	0.00	0.00	4.40
2994	4248	2.161012	GCGGATGAGTCCATATGCAATG	59.839	50.000	0.00	0.00	45.37	2.82
3006	4260	1.690633	AGGGGATGTGCGGATGAGT	60.691	57.895	0.00	0.00	0.00	3.41
3235	4547	4.745620	GCTTACTTGTATAGTAGCTGTGCC	59.254	45.833	0.00	0.00	40.35	5.01
3299	6326	5.715070	AGCGACTGACTGCCTTAATATATC	58.285	41.667	0.00	0.00	0.00	1.63
3317	6344	4.615541	GTGCCACAAATAAAACTTAGCGAC	59.384	41.667	0.00	0.00	0.00	5.19
3318	6345	4.276183	TGTGCCACAAATAAAACTTAGCGA	59.724	37.500	0.00	0.00	0.00	4.93
3319	6346	4.381566	GTGTGCCACAAATAAAACTTAGCG	59.618	41.667	0.00	0.00	34.08	4.26
3320	6347	5.528870	AGTGTGCCACAAATAAAACTTAGC	58.471	37.500	0.00	0.00	36.74	3.09
3347	6374	6.741992	TGTGATCTGAAATTATGGTCACAC	57.258	37.500	13.73	0.00	39.40	3.82
3349	6409	9.079833	CAAATTGTGATCTGAAATTATGGTCAC	57.920	33.333	10.07	10.07	36.09	3.67
3350	6410	9.022884	TCAAATTGTGATCTGAAATTATGGTCA	57.977	29.630	0.00	0.00	0.00	4.02
3351	6411	9.512435	CTCAAATTGTGATCTGAAATTATGGTC	57.488	33.333	0.00	0.00	35.07	4.02
3352	6412	9.246670	TCTCAAATTGTGATCTGAAATTATGGT	57.753	29.630	0.00	0.00	35.07	3.55
3375	6435	6.529220	AGTATGGCAAGGTAATTCAGATCTC	58.471	40.000	0.00	0.00	0.00	2.75
3396	6456	2.230508	CTGCTAGACCCGTGACAAAGTA	59.769	50.000	0.00	0.00	0.00	2.24
3402	6462	1.215647	CACCTGCTAGACCCGTGAC	59.784	63.158	0.00	0.00	0.00	3.67
3407	6467	0.038310	AAAAGGCACCTGCTAGACCC	59.962	55.000	0.00	0.00	41.70	4.46
3427	6487	6.866770	CAGAATTTTAGCCATGATGCCAATAG	59.133	38.462	0.00	0.00	0.00	1.73
3482	6542	3.784701	TCGCTGAGAAGGTTAGATGAC	57.215	47.619	0.00	0.00	0.00	3.06
3617	6811	8.914011	TCTGATTCCAGACGAGAATAAAATAGA	58.086	33.333	0.00	0.00	44.01	1.98
3640	6834	5.054477	TGCACTCATCATGTACATCATCTG	58.946	41.667	5.07	0.00	34.09	2.90
3887	8500	5.552807	TCGAAGTACACAAAACTTTCAACG	58.447	37.500	0.00	0.00	37.31	4.10
3930	8543	7.147976	ACAGCAATTGGAAACTAAAATCAGAC	58.852	34.615	7.72	0.00	0.00	3.51
3971	8584	3.008923	TGTTATGTCCATGGAGCAGAACA	59.991	43.478	31.47	31.47	40.51	3.18
3990	8603	2.158696	ACTGAGGCAAAAGAGAGCTGTT	60.159	45.455	0.00	0.00	0.00	3.16
3991	8604	1.419387	ACTGAGGCAAAAGAGAGCTGT	59.581	47.619	0.00	0.00	0.00	4.40
4151	8766	0.533491	TTGTGTTCCGGGGAGTATCG	59.467	55.000	0.00	0.00	34.37	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.