Multiple sequence alignment - TraesCS7A01G062300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G062300 chr7A 100.000 2551 0 0 1 2551 30965772 30968322 0.000000e+00 4711
1 TraesCS7A01G062300 chr7A 87.009 331 33 4 223 553 30908027 30908347 5.190000e-97 364
2 TraesCS7A01G062300 chr6D 92.753 1987 118 12 571 2551 312544305 312542339 0.000000e+00 2848
3 TraesCS7A01G062300 chr5D 92.296 2012 109 21 575 2551 45518955 45516955 0.000000e+00 2815
4 TraesCS7A01G062300 chr5D 91.575 273 11 4 2289 2551 275161468 275161198 1.440000e-97 366
5 TraesCS7A01G062300 chr5D 89.545 220 15 6 2337 2551 514512594 514512378 3.230000e-69 272
6 TraesCS7A01G062300 chr3A 91.931 1983 125 14 575 2551 235187479 235189432 0.000000e+00 2743
7 TraesCS7A01G062300 chr1A 91.500 2000 142 13 560 2551 556201746 556203725 0.000000e+00 2726
8 TraesCS7A01G062300 chr2B 90.972 2016 134 15 575 2551 173503419 173501413 0.000000e+00 2671
9 TraesCS7A01G062300 chr2B 91.996 1899 126 15 575 2458 19091947 19093834 0.000000e+00 2641
10 TraesCS7A01G062300 chr2B 90.914 1992 135 22 575 2551 71201256 71199296 0.000000e+00 2634
11 TraesCS7A01G062300 chr2B 90.732 205 19 0 28 232 718919861 718920065 8.990000e-70 274
12 TraesCS7A01G062300 chr2B 89.268 205 20 2 29 233 179256712 179256510 3.260000e-64 255
13 TraesCS7A01G062300 chr5A 91.119 1903 142 13 575 2458 700182693 700184587 0.000000e+00 2553
14 TraesCS7A01G062300 chr5A 88.491 391 37 7 2166 2551 553436302 553435915 1.380000e-127 466
15 TraesCS7A01G062300 chr3D 94.143 1639 82 11 922 2551 447973264 447971631 0.000000e+00 2483
16 TraesCS7A01G062300 chr3D 92.443 397 24 2 575 971 17578801 17578411 1.710000e-156 562
17 TraesCS7A01G062300 chr2D 91.582 689 35 9 575 1240 544984289 544983601 0.000000e+00 929
18 TraesCS7A01G062300 chr7B 93.333 360 24 0 575 934 702337217 702337576 1.340000e-147 532
19 TraesCS7A01G062300 chr7B 90.598 234 18 2 1 233 662640827 662640597 8.870000e-80 307
20 TraesCS7A01G062300 chr6A 89.924 397 32 3 575 971 14040436 14040824 2.930000e-139 505
21 TraesCS7A01G062300 chr6A 90.129 233 23 0 1 233 559744891 559745123 1.150000e-78 303
22 TraesCS7A01G062300 chr7D 88.323 334 29 4 223 556 30460902 30461225 2.380000e-105 392
23 TraesCS7A01G062300 chr7D 92.704 233 17 0 1 233 294417393 294417625 1.130000e-88 337
24 TraesCS7A01G062300 chr4A 87.126 334 32 5 223 556 698345339 698345661 4.010000e-98 368
25 TraesCS7A01G062300 chr6B 86.395 294 8 5 2289 2551 59431924 59431632 2.480000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G062300 chr7A 30965772 30968322 2550 False 4711 4711 100.000 1 2551 1 chr7A.!!$F2 2550
1 TraesCS7A01G062300 chr6D 312542339 312544305 1966 True 2848 2848 92.753 571 2551 1 chr6D.!!$R1 1980
2 TraesCS7A01G062300 chr5D 45516955 45518955 2000 True 2815 2815 92.296 575 2551 1 chr5D.!!$R1 1976
3 TraesCS7A01G062300 chr3A 235187479 235189432 1953 False 2743 2743 91.931 575 2551 1 chr3A.!!$F1 1976
4 TraesCS7A01G062300 chr1A 556201746 556203725 1979 False 2726 2726 91.500 560 2551 1 chr1A.!!$F1 1991
5 TraesCS7A01G062300 chr2B 173501413 173503419 2006 True 2671 2671 90.972 575 2551 1 chr2B.!!$R2 1976
6 TraesCS7A01G062300 chr2B 19091947 19093834 1887 False 2641 2641 91.996 575 2458 1 chr2B.!!$F1 1883
7 TraesCS7A01G062300 chr2B 71199296 71201256 1960 True 2634 2634 90.914 575 2551 1 chr2B.!!$R1 1976
8 TraesCS7A01G062300 chr5A 700182693 700184587 1894 False 2553 2553 91.119 575 2458 1 chr5A.!!$F1 1883
9 TraesCS7A01G062300 chr3D 447971631 447973264 1633 True 2483 2483 94.143 922 2551 1 chr3D.!!$R2 1629
10 TraesCS7A01G062300 chr2D 544983601 544984289 688 True 929 929 91.582 575 1240 1 chr2D.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 508 0.039035 TTTTAGGCCGTGCTTGGGAT 59.961 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2569 0.03496 GGGGTGAGAAGCCCTCTTTC 60.035 60.0 5.73 0.0 45.39 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.486095 GCTTTCATTGATTTGTGTCGTTC 57.514 39.130 0.00 0.00 0.00 3.95
23 24 4.087085 GCTTTCATTGATTTGTGTCGTTCG 59.913 41.667 0.00 0.00 0.00 3.95
24 25 3.181826 TCATTGATTTGTGTCGTTCGC 57.818 42.857 0.00 0.00 0.00 4.70
25 26 1.898079 CATTGATTTGTGTCGTTCGCG 59.102 47.619 0.00 0.00 42.98 5.87
26 27 0.383737 TTGATTTGTGTCGTTCGCGC 60.384 50.000 0.00 0.00 41.05 6.86
27 28 1.203065 GATTTGTGTCGTTCGCGCA 59.797 52.632 8.75 0.00 41.05 6.09
28 29 0.179225 GATTTGTGTCGTTCGCGCAT 60.179 50.000 8.75 0.00 41.05 4.73
29 30 1.059979 GATTTGTGTCGTTCGCGCATA 59.940 47.619 8.75 0.00 41.05 3.14
30 31 0.436913 TTTGTGTCGTTCGCGCATAG 59.563 50.000 8.75 0.00 41.05 2.23
31 32 0.665068 TTGTGTCGTTCGCGCATAGT 60.665 50.000 8.75 0.00 41.05 2.12
32 33 0.168568 TGTGTCGTTCGCGCATAGTA 59.831 50.000 8.75 0.00 41.05 1.82
33 34 1.261989 GTGTCGTTCGCGCATAGTAA 58.738 50.000 8.75 0.00 41.05 2.24
34 35 1.007729 GTGTCGTTCGCGCATAGTAAC 60.008 52.381 8.75 0.00 41.05 2.50
35 36 1.135603 TGTCGTTCGCGCATAGTAACT 60.136 47.619 8.75 0.00 41.05 2.24
36 37 1.511958 GTCGTTCGCGCATAGTAACTC 59.488 52.381 8.75 0.00 41.05 3.01
37 38 1.399440 TCGTTCGCGCATAGTAACTCT 59.601 47.619 8.75 0.00 41.05 3.24
38 39 1.774085 CGTTCGCGCATAGTAACTCTC 59.226 52.381 8.75 0.00 0.00 3.20
39 40 2.539142 CGTTCGCGCATAGTAACTCTCT 60.539 50.000 8.75 0.00 0.00 3.10
40 41 2.757686 TCGCGCATAGTAACTCTCTG 57.242 50.000 8.75 0.00 0.00 3.35
41 42 1.333931 TCGCGCATAGTAACTCTCTGG 59.666 52.381 8.75 0.00 0.00 3.86
42 43 1.065701 CGCGCATAGTAACTCTCTGGT 59.934 52.381 8.75 0.00 0.00 4.00
43 44 2.733517 GCGCATAGTAACTCTCTGGTC 58.266 52.381 0.30 0.00 0.00 4.02
44 45 2.855187 GCGCATAGTAACTCTCTGGTCG 60.855 54.545 0.30 0.00 0.00 4.79
45 46 2.733517 GCATAGTAACTCTCTGGTCGC 58.266 52.381 0.00 0.00 0.00 5.19
46 47 2.099263 GCATAGTAACTCTCTGGTCGCA 59.901 50.000 0.00 0.00 0.00 5.10
47 48 3.696898 CATAGTAACTCTCTGGTCGCAC 58.303 50.000 0.00 0.00 0.00 5.34
48 49 0.522180 AGTAACTCTCTGGTCGCACG 59.478 55.000 0.00 0.00 0.00 5.34
49 50 1.071567 GTAACTCTCTGGTCGCACGC 61.072 60.000 0.00 0.00 0.00 5.34
50 51 2.523184 TAACTCTCTGGTCGCACGCG 62.523 60.000 3.53 3.53 41.35 6.01
72 73 2.826979 CATGCATGCACTTCTCACTC 57.173 50.000 25.37 0.00 0.00 3.51
73 74 1.062148 CATGCATGCACTTCTCACTCG 59.938 52.381 25.37 0.00 0.00 4.18
74 75 1.293963 TGCATGCACTTCTCACTCGC 61.294 55.000 18.46 0.00 0.00 5.03
75 76 1.706301 CATGCACTTCTCACTCGCG 59.294 57.895 0.00 0.00 0.00 5.87
76 77 2.097038 ATGCACTTCTCACTCGCGC 61.097 57.895 0.00 0.00 0.00 6.86
77 78 2.734723 GCACTTCTCACTCGCGCA 60.735 61.111 8.75 0.00 0.00 6.09
78 79 2.310233 GCACTTCTCACTCGCGCAA 61.310 57.895 8.75 0.00 0.00 4.85
79 80 1.831389 GCACTTCTCACTCGCGCAAA 61.831 55.000 8.75 0.00 0.00 3.68
80 81 0.792640 CACTTCTCACTCGCGCAAAT 59.207 50.000 8.75 0.00 0.00 2.32
81 82 1.071605 ACTTCTCACTCGCGCAAATC 58.928 50.000 8.75 0.00 0.00 2.17
82 83 1.070821 CTTCTCACTCGCGCAAATCA 58.929 50.000 8.75 0.00 0.00 2.57
83 84 1.060266 CTTCTCACTCGCGCAAATCAG 59.940 52.381 8.75 0.00 0.00 2.90
84 85 0.737367 TCTCACTCGCGCAAATCAGG 60.737 55.000 8.75 0.00 0.00 3.86
85 86 0.737367 CTCACTCGCGCAAATCAGGA 60.737 55.000 8.75 0.00 0.00 3.86
86 87 1.014044 TCACTCGCGCAAATCAGGAC 61.014 55.000 8.75 0.00 0.00 3.85
87 88 1.016130 CACTCGCGCAAATCAGGACT 61.016 55.000 8.75 0.00 0.00 3.85
88 89 1.016130 ACTCGCGCAAATCAGGACTG 61.016 55.000 8.75 0.00 0.00 3.51
89 90 2.099062 CGCGCAAATCAGGACTGC 59.901 61.111 8.75 0.00 0.00 4.40
90 91 2.679934 CGCGCAAATCAGGACTGCA 61.680 57.895 8.75 0.00 35.78 4.41
91 92 1.805254 GCGCAAATCAGGACTGCAT 59.195 52.632 0.30 0.00 35.78 3.96
92 93 0.524816 GCGCAAATCAGGACTGCATG 60.525 55.000 0.30 0.00 35.78 4.06
93 94 0.099968 CGCAAATCAGGACTGCATGG 59.900 55.000 0.00 0.00 35.78 3.66
94 95 0.179119 GCAAATCAGGACTGCATGGC 60.179 55.000 0.00 0.00 36.09 4.40
100 101 3.446570 GGACTGCATGGCCAGTGC 61.447 66.667 24.69 24.69 45.55 4.40
112 113 3.575506 CCAGTGCCTGGCTAATCAA 57.424 52.632 21.03 0.00 45.13 2.57
113 114 2.062971 CCAGTGCCTGGCTAATCAAT 57.937 50.000 21.03 0.00 45.13 2.57
114 115 2.381911 CCAGTGCCTGGCTAATCAATT 58.618 47.619 21.03 0.00 45.13 2.32
115 116 3.554934 CCAGTGCCTGGCTAATCAATTA 58.445 45.455 21.03 0.00 45.13 1.40
116 117 3.567164 CCAGTGCCTGGCTAATCAATTAG 59.433 47.826 21.03 5.56 45.13 1.73
117 118 4.454678 CAGTGCCTGGCTAATCAATTAGA 58.545 43.478 21.03 0.00 41.72 2.10
118 119 4.274459 CAGTGCCTGGCTAATCAATTAGAC 59.726 45.833 21.03 10.66 46.34 2.59
119 120 4.164988 AGTGCCTGGCTAATCAATTAGACT 59.835 41.667 21.03 7.14 46.31 3.24
120 121 4.274459 GTGCCTGGCTAATCAATTAGACTG 59.726 45.833 21.03 13.93 46.31 3.51
121 122 4.164030 TGCCTGGCTAATCAATTAGACTGA 59.836 41.667 21.03 3.13 46.31 3.41
122 123 5.163163 TGCCTGGCTAATCAATTAGACTGAT 60.163 40.000 21.03 0.00 46.31 2.90
123 124 5.767168 GCCTGGCTAATCAATTAGACTGATT 59.233 40.000 18.81 7.57 46.31 2.57
124 125 6.293845 GCCTGGCTAATCAATTAGACTGATTG 60.294 42.308 18.81 12.58 46.31 2.67
125 126 6.206243 CCTGGCTAATCAATTAGACTGATTGG 59.794 42.308 18.81 8.04 46.31 3.16
129 130 5.511234 AATCAATTAGACTGATTGGCTGC 57.489 39.130 17.25 0.00 41.02 5.25
130 131 4.226427 TCAATTAGACTGATTGGCTGCT 57.774 40.909 17.25 0.00 35.66 4.24
131 132 4.194640 TCAATTAGACTGATTGGCTGCTC 58.805 43.478 17.25 0.00 35.66 4.26
132 133 4.080695 TCAATTAGACTGATTGGCTGCTCT 60.081 41.667 17.25 0.00 35.66 4.09
133 134 3.988976 TTAGACTGATTGGCTGCTCTT 57.011 42.857 0.00 0.00 34.56 2.85
134 135 2.875094 AGACTGATTGGCTGCTCTTT 57.125 45.000 0.00 0.00 28.85 2.52
135 136 2.434428 AGACTGATTGGCTGCTCTTTG 58.566 47.619 0.00 0.00 28.85 2.77
136 137 0.886563 ACTGATTGGCTGCTCTTTGC 59.113 50.000 0.00 0.00 43.25 3.68
148 149 3.000082 GCTCTTTGCAAAGTTAACGCT 58.000 42.857 32.46 0.00 42.31 5.07
149 150 2.721090 GCTCTTTGCAAAGTTAACGCTG 59.279 45.455 32.46 16.69 42.31 5.18
150 151 3.548014 GCTCTTTGCAAAGTTAACGCTGA 60.548 43.478 32.46 13.88 42.31 4.26
151 152 3.947626 TCTTTGCAAAGTTAACGCTGAC 58.052 40.909 32.46 6.04 37.31 3.51
152 153 3.375610 TCTTTGCAAAGTTAACGCTGACA 59.624 39.130 32.46 11.17 37.31 3.58
153 154 3.980646 TTGCAAAGTTAACGCTGACAT 57.019 38.095 12.51 0.00 0.00 3.06
154 155 3.266541 TGCAAAGTTAACGCTGACATG 57.733 42.857 12.51 0.00 0.00 3.21
155 156 2.875317 TGCAAAGTTAACGCTGACATGA 59.125 40.909 12.51 0.00 0.00 3.07
156 157 3.226347 GCAAAGTTAACGCTGACATGAC 58.774 45.455 12.51 0.00 0.00 3.06
157 158 3.303725 GCAAAGTTAACGCTGACATGACA 60.304 43.478 12.51 0.00 0.00 3.58
158 159 4.613622 GCAAAGTTAACGCTGACATGACAT 60.614 41.667 12.51 0.00 0.00 3.06
159 160 5.390461 GCAAAGTTAACGCTGACATGACATA 60.390 40.000 12.51 0.00 0.00 2.29
160 161 6.598525 CAAAGTTAACGCTGACATGACATAA 58.401 36.000 0.00 0.00 0.00 1.90
161 162 6.795098 AAGTTAACGCTGACATGACATAAA 57.205 33.333 0.00 0.00 0.00 1.40
162 163 6.985188 AGTTAACGCTGACATGACATAAAT 57.015 33.333 0.00 0.00 0.00 1.40
163 164 7.005062 AGTTAACGCTGACATGACATAAATC 57.995 36.000 0.00 0.00 0.00 2.17
164 165 6.818644 AGTTAACGCTGACATGACATAAATCT 59.181 34.615 0.00 0.00 0.00 2.40
165 166 5.475273 AACGCTGACATGACATAAATCTG 57.525 39.130 0.00 0.00 0.00 2.90
166 167 4.758688 ACGCTGACATGACATAAATCTGA 58.241 39.130 0.00 0.00 0.00 3.27
167 168 5.363101 ACGCTGACATGACATAAATCTGAT 58.637 37.500 0.00 0.00 0.00 2.90
168 169 6.515832 ACGCTGACATGACATAAATCTGATA 58.484 36.000 0.00 0.00 0.00 2.15
169 170 7.157347 ACGCTGACATGACATAAATCTGATAT 58.843 34.615 0.00 0.00 0.00 1.63
170 171 7.117379 ACGCTGACATGACATAAATCTGATATG 59.883 37.037 0.00 0.00 36.92 1.78
171 172 7.412672 CGCTGACATGACATAAATCTGATATGG 60.413 40.741 0.00 0.00 35.51 2.74
172 173 7.605309 GCTGACATGACATAAATCTGATATGGA 59.395 37.037 0.00 0.00 35.51 3.41
173 174 8.837788 TGACATGACATAAATCTGATATGGAC 57.162 34.615 0.00 1.28 35.51 4.02
174 175 8.431222 TGACATGACATAAATCTGATATGGACA 58.569 33.333 0.00 5.63 35.51 4.02
175 176 9.445878 GACATGACATAAATCTGATATGGACAT 57.554 33.333 0.00 7.16 35.51 3.06
176 177 9.445878 ACATGACATAAATCTGATATGGACATC 57.554 33.333 0.00 0.00 35.51 3.06
177 178 8.601476 CATGACATAAATCTGATATGGACATCG 58.399 37.037 5.62 0.00 35.51 3.84
178 179 7.670364 TGACATAAATCTGATATGGACATCGT 58.330 34.615 5.62 0.00 35.51 3.73
179 180 7.599998 TGACATAAATCTGATATGGACATCGTG 59.400 37.037 5.62 0.00 35.51 4.35
180 181 6.369890 ACATAAATCTGATATGGACATCGTGC 59.630 38.462 5.62 0.00 35.51 5.34
181 182 4.341366 AATCTGATATGGACATCGTGCA 57.659 40.909 0.00 0.00 38.41 4.57
182 183 4.548451 ATCTGATATGGACATCGTGCAT 57.452 40.909 6.38 6.38 45.84 3.96
183 184 3.656559 TCTGATATGGACATCGTGCATG 58.343 45.455 10.90 0.00 43.93 4.06
185 186 3.807553 TGATATGGACATCGTGCATGTT 58.192 40.909 10.90 0.00 46.53 2.71
186 187 4.954875 TGATATGGACATCGTGCATGTTA 58.045 39.130 10.90 0.00 46.53 2.41
187 188 5.363939 TGATATGGACATCGTGCATGTTAA 58.636 37.500 10.90 0.00 46.53 2.01
188 189 5.466393 TGATATGGACATCGTGCATGTTAAG 59.534 40.000 10.90 0.00 46.53 1.85
189 190 3.326836 TGGACATCGTGCATGTTAAGA 57.673 42.857 5.68 0.00 46.53 2.10
190 191 3.261580 TGGACATCGTGCATGTTAAGAG 58.738 45.455 5.68 0.00 46.53 2.85
191 192 3.056179 TGGACATCGTGCATGTTAAGAGA 60.056 43.478 5.68 0.00 46.53 3.10
192 193 3.932710 GGACATCGTGCATGTTAAGAGAA 59.067 43.478 5.68 0.00 46.53 2.87
193 194 4.572389 GGACATCGTGCATGTTAAGAGAAT 59.428 41.667 5.68 0.00 46.53 2.40
194 195 5.753438 GGACATCGTGCATGTTAAGAGAATA 59.247 40.000 5.68 0.00 46.53 1.75
195 196 6.074088 GGACATCGTGCATGTTAAGAGAATAG 60.074 42.308 5.68 0.00 46.53 1.73
196 197 5.755375 ACATCGTGCATGTTAAGAGAATAGG 59.245 40.000 5.68 0.00 43.89 2.57
197 198 5.592104 TCGTGCATGTTAAGAGAATAGGA 57.408 39.130 5.68 0.00 0.00 2.94
198 199 5.972935 TCGTGCATGTTAAGAGAATAGGAA 58.027 37.500 5.68 0.00 0.00 3.36
199 200 6.042777 TCGTGCATGTTAAGAGAATAGGAAG 58.957 40.000 5.68 0.00 0.00 3.46
200 201 6.042777 CGTGCATGTTAAGAGAATAGGAAGA 58.957 40.000 0.00 0.00 0.00 2.87
201 202 6.535150 CGTGCATGTTAAGAGAATAGGAAGAA 59.465 38.462 0.00 0.00 0.00 2.52
202 203 7.254252 CGTGCATGTTAAGAGAATAGGAAGAAG 60.254 40.741 0.00 0.00 0.00 2.85
203 204 7.550906 GTGCATGTTAAGAGAATAGGAAGAAGT 59.449 37.037 0.00 0.00 0.00 3.01
204 205 7.550551 TGCATGTTAAGAGAATAGGAAGAAGTG 59.449 37.037 0.00 0.00 0.00 3.16
205 206 7.011857 GCATGTTAAGAGAATAGGAAGAAGTGG 59.988 40.741 0.00 0.00 0.00 4.00
206 207 7.792364 TGTTAAGAGAATAGGAAGAAGTGGA 57.208 36.000 0.00 0.00 0.00 4.02
207 208 8.202461 TGTTAAGAGAATAGGAAGAAGTGGAA 57.798 34.615 0.00 0.00 0.00 3.53
208 209 8.656806 TGTTAAGAGAATAGGAAGAAGTGGAAA 58.343 33.333 0.00 0.00 0.00 3.13
209 210 9.503399 GTTAAGAGAATAGGAAGAAGTGGAAAA 57.497 33.333 0.00 0.00 0.00 2.29
210 211 7.987750 AAGAGAATAGGAAGAAGTGGAAAAC 57.012 36.000 0.00 0.00 0.00 2.43
211 212 7.079451 AGAGAATAGGAAGAAGTGGAAAACA 57.921 36.000 0.00 0.00 0.00 2.83
212 213 7.518188 AGAGAATAGGAAGAAGTGGAAAACAA 58.482 34.615 0.00 0.00 0.00 2.83
213 214 7.445707 AGAGAATAGGAAGAAGTGGAAAACAAC 59.554 37.037 0.00 0.00 0.00 3.32
214 215 7.290813 AGAATAGGAAGAAGTGGAAAACAACT 58.709 34.615 0.00 0.00 0.00 3.16
215 216 7.780271 AGAATAGGAAGAAGTGGAAAACAACTT 59.220 33.333 0.00 0.00 32.02 2.66
216 217 8.990163 AATAGGAAGAAGTGGAAAACAACTTA 57.010 30.769 0.00 0.00 30.39 2.24
217 218 9.588096 AATAGGAAGAAGTGGAAAACAACTTAT 57.412 29.630 0.00 0.00 30.39 1.73
218 219 7.898014 AGGAAGAAGTGGAAAACAACTTATT 57.102 32.000 0.00 0.00 30.18 1.40
219 220 8.990163 AGGAAGAAGTGGAAAACAACTTATTA 57.010 30.769 0.00 0.00 28.79 0.98
220 221 9.416284 AGGAAGAAGTGGAAAACAACTTATTAA 57.584 29.630 0.00 0.00 28.79 1.40
221 222 9.678941 GGAAGAAGTGGAAAACAACTTATTAAG 57.321 33.333 1.79 1.79 28.79 1.85
262 263 6.978343 AACTAAAAACTTGCTTTTCAACCC 57.022 33.333 0.00 0.00 30.24 4.11
263 264 6.043854 ACTAAAAACTTGCTTTTCAACCCA 57.956 33.333 0.00 0.00 30.24 4.51
264 265 6.106003 ACTAAAAACTTGCTTTTCAACCCAG 58.894 36.000 0.00 0.00 30.24 4.45
265 266 4.817318 AAAACTTGCTTTTCAACCCAGA 57.183 36.364 0.00 0.00 0.00 3.86
266 267 4.817318 AAACTTGCTTTTCAACCCAGAA 57.183 36.364 0.00 0.00 0.00 3.02
267 268 4.817318 AACTTGCTTTTCAACCCAGAAA 57.183 36.364 0.00 0.00 35.82 2.52
268 269 5.357742 AACTTGCTTTTCAACCCAGAAAT 57.642 34.783 0.00 0.00 37.35 2.17
269 270 5.357742 ACTTGCTTTTCAACCCAGAAATT 57.642 34.783 0.00 0.00 37.35 1.82
270 271 5.359756 ACTTGCTTTTCAACCCAGAAATTC 58.640 37.500 0.00 0.00 37.35 2.17
271 272 5.104982 ACTTGCTTTTCAACCCAGAAATTCA 60.105 36.000 0.00 0.00 37.35 2.57
272 273 5.549742 TGCTTTTCAACCCAGAAATTCAT 57.450 34.783 0.00 0.00 37.35 2.57
273 274 6.662865 TGCTTTTCAACCCAGAAATTCATA 57.337 33.333 0.00 0.00 37.35 2.15
274 275 7.060383 TGCTTTTCAACCCAGAAATTCATAA 57.940 32.000 0.00 0.00 37.35 1.90
275 276 6.928492 TGCTTTTCAACCCAGAAATTCATAAC 59.072 34.615 0.00 0.00 37.35 1.89
276 277 6.368791 GCTTTTCAACCCAGAAATTCATAACC 59.631 38.462 0.00 0.00 37.35 2.85
277 278 6.985653 TTTCAACCCAGAAATTCATAACCA 57.014 33.333 0.00 0.00 32.88 3.67
278 279 6.985653 TTCAACCCAGAAATTCATAACCAA 57.014 33.333 0.00 0.00 0.00 3.67
279 280 7.552050 TTCAACCCAGAAATTCATAACCAAT 57.448 32.000 0.00 0.00 0.00 3.16
280 281 6.934056 TCAACCCAGAAATTCATAACCAATG 58.066 36.000 0.00 0.00 36.88 2.82
281 282 6.723515 TCAACCCAGAAATTCATAACCAATGA 59.276 34.615 0.00 0.00 43.03 2.57
282 283 7.399765 TCAACCCAGAAATTCATAACCAATGAT 59.600 33.333 0.00 0.00 44.13 2.45
283 284 7.352079 ACCCAGAAATTCATAACCAATGATC 57.648 36.000 0.00 0.00 44.13 2.92
284 285 6.896860 ACCCAGAAATTCATAACCAATGATCA 59.103 34.615 0.00 0.00 44.13 2.92
285 286 7.399765 ACCCAGAAATTCATAACCAATGATCAA 59.600 33.333 0.00 0.00 44.13 2.57
286 287 7.707893 CCCAGAAATTCATAACCAATGATCAAC 59.292 37.037 0.00 0.00 44.13 3.18
287 288 8.472413 CCAGAAATTCATAACCAATGATCAACT 58.528 33.333 0.00 0.00 44.13 3.16
288 289 9.865321 CAGAAATTCATAACCAATGATCAACTT 57.135 29.630 0.00 0.00 44.13 2.66
293 294 8.956533 TTCATAACCAATGATCAACTTATCGA 57.043 30.769 0.00 0.00 44.13 3.59
294 295 9.559732 TTCATAACCAATGATCAACTTATCGAT 57.440 29.630 2.16 2.16 44.13 3.59
295 296 9.559732 TCATAACCAATGATCAACTTATCGATT 57.440 29.630 1.71 0.00 39.77 3.34
299 300 8.383318 ACCAATGATCAACTTATCGATTTAGG 57.617 34.615 1.71 0.00 0.00 2.69
300 301 8.210946 ACCAATGATCAACTTATCGATTTAGGA 58.789 33.333 1.71 0.00 0.00 2.94
301 302 9.224267 CCAATGATCAACTTATCGATTTAGGAT 57.776 33.333 1.71 1.07 0.00 3.24
315 316 9.950496 ATCGATTTAGGATAGAATAAGCATGTT 57.050 29.630 0.00 0.00 0.00 2.71
316 317 9.778741 TCGATTTAGGATAGAATAAGCATGTTT 57.221 29.630 0.00 0.00 0.00 2.83
324 325 9.130312 GGATAGAATAAGCATGTTTAGACTACG 57.870 37.037 15.05 0.00 0.00 3.51
325 326 9.894783 GATAGAATAAGCATGTTTAGACTACGA 57.105 33.333 15.05 3.09 0.00 3.43
327 328 8.408743 AGAATAAGCATGTTTAGACTACGAAC 57.591 34.615 8.07 0.00 0.00 3.95
328 329 8.251721 AGAATAAGCATGTTTAGACTACGAACT 58.748 33.333 8.07 0.00 0.00 3.01
329 330 8.773404 AATAAGCATGTTTAGACTACGAACTT 57.227 30.769 8.07 0.00 0.00 2.66
330 331 6.467723 AAGCATGTTTAGACTACGAACTTG 57.532 37.500 0.00 7.88 33.86 3.16
331 332 5.539048 AGCATGTTTAGACTACGAACTTGT 58.461 37.500 11.58 0.00 33.50 3.16
332 333 5.989777 AGCATGTTTAGACTACGAACTTGTT 59.010 36.000 11.58 5.98 33.50 2.83
333 334 6.482308 AGCATGTTTAGACTACGAACTTGTTT 59.518 34.615 11.58 2.95 33.50 2.83
334 335 7.012044 AGCATGTTTAGACTACGAACTTGTTTT 59.988 33.333 11.58 1.37 33.50 2.43
335 336 7.642586 GCATGTTTAGACTACGAACTTGTTTTT 59.357 33.333 11.58 0.00 33.50 1.94
336 337 8.943925 CATGTTTAGACTACGAACTTGTTTTTG 58.056 33.333 0.00 0.00 0.00 2.44
337 338 8.031848 TGTTTAGACTACGAACTTGTTTTTGT 57.968 30.769 0.00 0.00 0.00 2.83
338 339 7.958567 TGTTTAGACTACGAACTTGTTTTTGTG 59.041 33.333 0.00 0.00 0.00 3.33
339 340 7.830940 TTAGACTACGAACTTGTTTTTGTGA 57.169 32.000 0.00 0.00 0.00 3.58
340 341 6.920569 AGACTACGAACTTGTTTTTGTGAT 57.079 33.333 0.00 0.00 0.00 3.06
341 342 9.531942 TTAGACTACGAACTTGTTTTTGTGATA 57.468 29.630 0.00 0.00 0.00 2.15
342 343 7.848491 AGACTACGAACTTGTTTTTGTGATAC 58.152 34.615 0.00 0.00 0.00 2.24
343 344 7.709613 AGACTACGAACTTGTTTTTGTGATACT 59.290 33.333 0.00 0.00 0.00 2.12
344 345 8.876275 ACTACGAACTTGTTTTTGTGATACTA 57.124 30.769 0.00 0.00 0.00 1.82
345 346 9.316730 ACTACGAACTTGTTTTTGTGATACTAA 57.683 29.630 0.00 0.00 0.00 2.24
346 347 9.793245 CTACGAACTTGTTTTTGTGATACTAAG 57.207 33.333 0.00 0.00 0.00 2.18
347 348 8.205131 ACGAACTTGTTTTTGTGATACTAAGT 57.795 30.769 0.00 0.00 0.00 2.24
348 349 8.671028 ACGAACTTGTTTTTGTGATACTAAGTT 58.329 29.630 0.00 0.00 39.13 2.66
349 350 9.498307 CGAACTTGTTTTTGTGATACTAAGTTT 57.502 29.630 0.00 0.00 37.28 2.66
495 496 7.995463 TTGTAACATCAAAGTTGTTTTAGGC 57.005 32.000 0.00 0.00 38.26 3.93
496 497 6.508777 TGTAACATCAAAGTTGTTTTAGGCC 58.491 36.000 0.00 0.00 38.26 5.19
497 498 4.237349 ACATCAAAGTTGTTTTAGGCCG 57.763 40.909 0.00 0.00 0.00 6.13
498 499 3.634910 ACATCAAAGTTGTTTTAGGCCGT 59.365 39.130 0.00 0.00 0.00 5.68
499 500 3.701532 TCAAAGTTGTTTTAGGCCGTG 57.298 42.857 0.00 0.00 0.00 4.94
500 501 2.124122 CAAAGTTGTTTTAGGCCGTGC 58.876 47.619 0.00 0.00 0.00 5.34
501 502 1.687563 AAGTTGTTTTAGGCCGTGCT 58.312 45.000 0.00 0.00 0.00 4.40
502 503 1.687563 AGTTGTTTTAGGCCGTGCTT 58.312 45.000 0.00 0.00 0.00 3.91
503 504 1.336755 AGTTGTTTTAGGCCGTGCTTG 59.663 47.619 0.00 0.00 0.00 4.01
504 505 0.671251 TTGTTTTAGGCCGTGCTTGG 59.329 50.000 0.00 0.00 0.00 3.61
505 506 1.175983 TGTTTTAGGCCGTGCTTGGG 61.176 55.000 0.00 0.00 0.00 4.12
506 507 0.891904 GTTTTAGGCCGTGCTTGGGA 60.892 55.000 0.00 0.00 0.00 4.37
507 508 0.039035 TTTTAGGCCGTGCTTGGGAT 59.961 50.000 0.00 0.00 0.00 3.85
508 509 0.913205 TTTAGGCCGTGCTTGGGATA 59.087 50.000 0.00 0.00 0.00 2.59
509 510 0.468226 TTAGGCCGTGCTTGGGATAG 59.532 55.000 0.00 0.00 0.00 2.08
510 511 0.397957 TAGGCCGTGCTTGGGATAGA 60.398 55.000 0.00 0.00 0.00 1.98
511 512 1.056700 AGGCCGTGCTTGGGATAGAT 61.057 55.000 0.00 0.00 0.00 1.98
512 513 0.886490 GGCCGTGCTTGGGATAGATG 60.886 60.000 0.00 0.00 0.00 2.90
513 514 0.179045 GCCGTGCTTGGGATAGATGT 60.179 55.000 0.00 0.00 0.00 3.06
514 515 1.070134 GCCGTGCTTGGGATAGATGTA 59.930 52.381 0.00 0.00 0.00 2.29
515 516 2.289694 GCCGTGCTTGGGATAGATGTAT 60.290 50.000 0.00 0.00 0.00 2.29
516 517 3.807209 GCCGTGCTTGGGATAGATGTATT 60.807 47.826 0.00 0.00 0.00 1.89
517 518 4.389374 CCGTGCTTGGGATAGATGTATTT 58.611 43.478 0.00 0.00 0.00 1.40
518 519 4.821805 CCGTGCTTGGGATAGATGTATTTT 59.178 41.667 0.00 0.00 0.00 1.82
519 520 5.277974 CCGTGCTTGGGATAGATGTATTTTG 60.278 44.000 0.00 0.00 0.00 2.44
520 521 5.296780 CGTGCTTGGGATAGATGTATTTTGT 59.703 40.000 0.00 0.00 0.00 2.83
521 522 6.481976 CGTGCTTGGGATAGATGTATTTTGTA 59.518 38.462 0.00 0.00 0.00 2.41
522 523 7.518370 CGTGCTTGGGATAGATGTATTTTGTAC 60.518 40.741 0.00 0.00 0.00 2.90
523 524 6.481976 TGCTTGGGATAGATGTATTTTGTACG 59.518 38.462 0.00 0.00 0.00 3.67
524 525 6.073222 GCTTGGGATAGATGTATTTTGTACGG 60.073 42.308 0.00 0.00 0.00 4.02
525 526 5.860611 TGGGATAGATGTATTTTGTACGGG 58.139 41.667 0.00 0.00 0.00 5.28
526 527 5.221762 TGGGATAGATGTATTTTGTACGGGG 60.222 44.000 0.00 0.00 0.00 5.73
527 528 5.243207 GGATAGATGTATTTTGTACGGGGG 58.757 45.833 0.00 0.00 0.00 5.40
528 529 5.221783 GGATAGATGTATTTTGTACGGGGGT 60.222 44.000 0.00 0.00 0.00 4.95
529 530 3.881220 AGATGTATTTTGTACGGGGGTG 58.119 45.455 0.00 0.00 0.00 4.61
530 531 3.264964 AGATGTATTTTGTACGGGGGTGT 59.735 43.478 0.00 0.00 0.00 4.16
531 532 4.470664 AGATGTATTTTGTACGGGGGTGTA 59.529 41.667 0.00 0.00 0.00 2.90
532 533 4.630644 TGTATTTTGTACGGGGGTGTAA 57.369 40.909 0.00 0.00 0.00 2.41
533 534 4.978099 TGTATTTTGTACGGGGGTGTAAA 58.022 39.130 0.00 0.00 0.00 2.01
534 535 5.380043 TGTATTTTGTACGGGGGTGTAAAA 58.620 37.500 0.00 0.00 0.00 1.52
535 536 4.852134 ATTTTGTACGGGGGTGTAAAAC 57.148 40.909 0.00 0.00 0.00 2.43
536 537 3.574354 TTTGTACGGGGGTGTAAAACT 57.426 42.857 0.00 0.00 0.00 2.66
537 538 3.574354 TTGTACGGGGGTGTAAAACTT 57.426 42.857 0.00 0.00 0.00 2.66
538 539 4.696479 TTGTACGGGGGTGTAAAACTTA 57.304 40.909 0.00 0.00 0.00 2.24
539 540 4.001618 TGTACGGGGGTGTAAAACTTAC 57.998 45.455 0.00 0.00 0.00 2.34
540 541 2.168326 ACGGGGGTGTAAAACTTACG 57.832 50.000 0.00 0.00 0.00 3.18
541 542 1.416030 ACGGGGGTGTAAAACTTACGT 59.584 47.619 0.00 0.00 0.00 3.57
542 543 1.799994 CGGGGGTGTAAAACTTACGTG 59.200 52.381 0.00 0.00 0.00 4.49
543 544 2.806382 CGGGGGTGTAAAACTTACGTGT 60.806 50.000 0.00 0.00 0.00 4.49
544 545 2.549329 GGGGGTGTAAAACTTACGTGTG 59.451 50.000 0.00 0.00 0.00 3.82
545 546 3.205338 GGGGTGTAAAACTTACGTGTGT 58.795 45.455 0.00 0.00 0.00 3.72
546 547 4.376146 GGGGTGTAAAACTTACGTGTGTA 58.624 43.478 0.00 0.00 0.00 2.90
547 548 4.996758 GGGGTGTAAAACTTACGTGTGTAT 59.003 41.667 0.00 0.00 0.00 2.29
548 549 5.106987 GGGGTGTAAAACTTACGTGTGTATG 60.107 44.000 0.00 0.00 33.24 2.39
549 550 5.466393 GGGTGTAAAACTTACGTGTGTATGT 59.534 40.000 0.00 0.00 39.77 2.29
550 551 6.018016 GGGTGTAAAACTTACGTGTGTATGTT 60.018 38.462 0.00 2.08 45.56 2.71
551 552 7.170658 GGGTGTAAAACTTACGTGTGTATGTTA 59.829 37.037 0.00 0.00 43.92 2.41
552 553 8.003784 GGTGTAAAACTTACGTGTGTATGTTAC 58.996 37.037 0.00 7.42 43.92 2.50
553 554 8.003784 GTGTAAAACTTACGTGTGTATGTTACC 58.996 37.037 0.00 0.00 43.92 2.85
554 555 5.827568 AAACTTACGTGTGTATGTTACCG 57.172 39.130 0.00 0.00 43.92 4.02
555 556 3.836949 ACTTACGTGTGTATGTTACCGG 58.163 45.455 0.00 0.00 35.97 5.28
556 557 3.255642 ACTTACGTGTGTATGTTACCGGT 59.744 43.478 13.98 13.98 35.97 5.28
557 558 4.457603 ACTTACGTGTGTATGTTACCGGTA 59.542 41.667 11.16 11.16 35.97 4.02
558 559 3.492421 ACGTGTGTATGTTACCGGTAG 57.508 47.619 15.20 1.44 0.00 3.18
564 565 4.248058 GTGTATGTTACCGGTAGCTTTGT 58.752 43.478 26.16 13.57 0.00 2.83
569 570 7.607223 TGTATGTTACCGGTAGCTTTGTATTTT 59.393 33.333 26.16 5.66 0.00 1.82
631 634 1.742268 GCTCAGTTTTGCCCTCAGATC 59.258 52.381 0.00 0.00 0.00 2.75
633 636 3.683802 CTCAGTTTTGCCCTCAGATCTT 58.316 45.455 0.00 0.00 0.00 2.40
634 637 4.077822 CTCAGTTTTGCCCTCAGATCTTT 58.922 43.478 0.00 0.00 0.00 2.52
638 641 7.402054 TCAGTTTTGCCCTCAGATCTTTATTA 58.598 34.615 0.00 0.00 0.00 0.98
660 663 1.003696 GCTCAGTTTTGCCCCTAGTCT 59.996 52.381 0.00 0.00 0.00 3.24
735 738 4.109675 CGGCCCTTACAGGTGGGG 62.110 72.222 0.00 7.61 43.53 4.96
759 762 1.298859 GCGGCAGAGACGACCAATTT 61.299 55.000 0.00 0.00 35.20 1.82
851 854 2.074547 GCTATATAAGCGGGCGACAA 57.925 50.000 0.00 0.00 42.53 3.18
934 961 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
943 970 0.829333 AGAGAGAGAGTACGGCGGTA 59.171 55.000 13.24 0.00 0.00 4.02
965 992 4.537433 GCTAGCTGTGGAGGGCGG 62.537 72.222 7.70 0.00 0.00 6.13
1125 1153 2.135933 GTTTCTCACACACCGAGGAAG 58.864 52.381 0.00 0.00 28.39 3.46
1236 1266 4.549458 GTTGATCTGTTTGGTGTTCATGG 58.451 43.478 0.00 0.00 0.00 3.66
1266 1296 4.280436 TGCTTCTTTCTTTGGGTCGATA 57.720 40.909 0.00 0.00 0.00 2.92
1319 1349 5.566230 GCAAGAAGAGCATGAAGAATGGTTT 60.566 40.000 0.00 0.00 46.95 3.27
1494 1524 4.154556 CCATTTGCAATTACTTTTGGGCAG 59.845 41.667 0.00 0.00 32.31 4.85
1519 1549 2.504367 AGGTATGGTAATCGCATTGGC 58.496 47.619 0.00 0.00 0.00 4.52
1563 1593 6.183360 TGGAAATGCATGAATTATGGAGGAAC 60.183 38.462 0.00 0.00 40.65 3.62
1570 1600 7.560991 TGCATGAATTATGGAGGAACTTGTAAT 59.439 33.333 0.00 0.00 36.45 1.89
1776 1811 2.622452 CCTCTGTGGGCCAAATTCAGAT 60.622 50.000 20.88 0.00 35.17 2.90
1817 1852 0.811281 GACTAATGGGCCAACTGCAC 59.189 55.000 11.89 0.00 46.61 4.57
1888 1924 9.905713 TCTGTTCTGATTTAATTTAGGCAGTAT 57.094 29.630 0.00 0.00 0.00 2.12
2185 2229 1.406860 AAAAATTGGTGCGGCTGGGT 61.407 50.000 0.00 0.00 0.00 4.51
2233 2277 1.312371 GGCATTTAGGGTTGCGCTGA 61.312 55.000 9.73 0.00 39.78 4.26
2262 2306 5.003804 GCAAGGACAGATGGAAAGACTTTA 58.996 41.667 0.00 0.00 0.00 1.85
2274 2318 5.311121 TGGAAAGACTTTAACATGGGTAGGA 59.689 40.000 0.00 0.00 0.00 2.94
2297 2341 9.386122 AGGAAAGGAATGTATACATAGTGAGAT 57.614 33.333 18.56 1.20 35.10 2.75
2356 2411 6.652481 TCCTTTGTTTTGCACTGAAATTTTGA 59.348 30.769 0.00 0.00 0.00 2.69
2368 2439 6.767423 CACTGAAATTTTGAAGGGTTGGAAAT 59.233 34.615 0.00 0.00 0.00 2.17
2387 2458 1.979855 TGTATGTTTGCACTGCCACT 58.020 45.000 0.00 0.00 0.00 4.00
2394 2465 1.769026 TTGCACTGCCACTTGGTTTA 58.231 45.000 0.00 0.00 37.57 2.01
2395 2466 1.317613 TGCACTGCCACTTGGTTTAG 58.682 50.000 0.00 0.00 37.57 1.85
2501 2600 1.368374 TCTCACCCCCTCCGATTTTT 58.632 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.087085 CGAACGACACAAATCAATGAAAGC 59.913 41.667 0.00 0.00 0.00 3.51
1 2 4.087085 GCGAACGACACAAATCAATGAAAG 59.913 41.667 0.00 0.00 0.00 2.62
2 3 3.971871 GCGAACGACACAAATCAATGAAA 59.028 39.130 0.00 0.00 0.00 2.69
3 4 3.550561 GCGAACGACACAAATCAATGAA 58.449 40.909 0.00 0.00 0.00 2.57
4 5 2.410902 CGCGAACGACACAAATCAATGA 60.411 45.455 0.00 0.00 43.93 2.57
5 6 1.898079 CGCGAACGACACAAATCAATG 59.102 47.619 0.00 0.00 43.93 2.82
6 7 1.724654 GCGCGAACGACACAAATCAAT 60.725 47.619 12.10 0.00 43.93 2.57
7 8 0.383737 GCGCGAACGACACAAATCAA 60.384 50.000 12.10 0.00 43.93 2.57
8 9 1.203065 GCGCGAACGACACAAATCA 59.797 52.632 12.10 0.00 43.93 2.57
9 10 0.179225 ATGCGCGAACGACACAAATC 60.179 50.000 12.10 0.00 43.93 2.17
10 11 1.060553 CTATGCGCGAACGACACAAAT 59.939 47.619 12.10 0.00 43.93 2.32
11 12 0.436913 CTATGCGCGAACGACACAAA 59.563 50.000 12.10 0.00 43.93 2.83
12 13 0.665068 ACTATGCGCGAACGACACAA 60.665 50.000 12.10 0.00 43.93 3.33
13 14 0.168568 TACTATGCGCGAACGACACA 59.831 50.000 12.10 0.00 43.93 3.72
14 15 1.007729 GTTACTATGCGCGAACGACAC 60.008 52.381 12.10 0.00 43.93 3.67
15 16 1.135603 AGTTACTATGCGCGAACGACA 60.136 47.619 12.10 0.00 43.93 4.35
16 17 1.511958 GAGTTACTATGCGCGAACGAC 59.488 52.381 12.10 0.58 43.93 4.34
17 18 1.399440 AGAGTTACTATGCGCGAACGA 59.601 47.619 12.10 0.00 43.93 3.85
18 19 1.774085 GAGAGTTACTATGCGCGAACG 59.226 52.381 12.10 0.00 44.07 3.95
19 20 2.784380 CAGAGAGTTACTATGCGCGAAC 59.216 50.000 12.10 3.72 31.06 3.95
20 21 2.223502 CCAGAGAGTTACTATGCGCGAA 60.224 50.000 12.10 0.00 36.61 4.70
21 22 1.333931 CCAGAGAGTTACTATGCGCGA 59.666 52.381 12.10 0.00 36.61 5.87
22 23 1.065701 ACCAGAGAGTTACTATGCGCG 59.934 52.381 0.00 0.00 36.61 6.86
23 24 2.733517 GACCAGAGAGTTACTATGCGC 58.266 52.381 0.00 0.00 36.61 6.09
24 25 2.855187 GCGACCAGAGAGTTACTATGCG 60.855 54.545 0.00 0.00 36.61 4.73
25 26 2.099263 TGCGACCAGAGAGTTACTATGC 59.901 50.000 0.00 0.00 36.61 3.14
26 27 3.696898 GTGCGACCAGAGAGTTACTATG 58.303 50.000 0.00 0.00 37.55 2.23
27 28 2.355132 CGTGCGACCAGAGAGTTACTAT 59.645 50.000 0.00 0.00 0.00 2.12
28 29 1.736126 CGTGCGACCAGAGAGTTACTA 59.264 52.381 0.00 0.00 0.00 1.82
29 30 0.522180 CGTGCGACCAGAGAGTTACT 59.478 55.000 0.00 0.00 0.00 2.24
30 31 1.071567 GCGTGCGACCAGAGAGTTAC 61.072 60.000 0.00 0.00 0.00 2.50
31 32 1.211969 GCGTGCGACCAGAGAGTTA 59.788 57.895 0.00 0.00 0.00 2.24
32 33 2.049063 GCGTGCGACCAGAGAGTT 60.049 61.111 0.00 0.00 0.00 3.01
33 34 4.406173 CGCGTGCGACCAGAGAGT 62.406 66.667 8.89 0.00 42.83 3.24
53 54 1.062148 CGAGTGAGAAGTGCATGCATG 59.938 52.381 25.64 22.70 0.00 4.06
54 55 1.366679 CGAGTGAGAAGTGCATGCAT 58.633 50.000 25.64 8.94 0.00 3.96
55 56 1.293963 GCGAGTGAGAAGTGCATGCA 61.294 55.000 18.46 18.46 0.00 3.96
56 57 1.423056 GCGAGTGAGAAGTGCATGC 59.577 57.895 11.82 11.82 0.00 4.06
57 58 1.706301 CGCGAGTGAGAAGTGCATG 59.294 57.895 0.00 0.00 0.00 4.06
58 59 2.097038 GCGCGAGTGAGAAGTGCAT 61.097 57.895 12.10 0.00 40.68 3.96
59 60 2.734723 GCGCGAGTGAGAAGTGCA 60.735 61.111 12.10 0.00 40.68 4.57
60 61 1.831389 TTTGCGCGAGTGAGAAGTGC 61.831 55.000 12.10 0.00 41.28 4.40
61 62 0.792640 ATTTGCGCGAGTGAGAAGTG 59.207 50.000 12.10 0.00 0.00 3.16
62 63 1.071605 GATTTGCGCGAGTGAGAAGT 58.928 50.000 12.10 0.00 0.00 3.01
63 64 1.060266 CTGATTTGCGCGAGTGAGAAG 59.940 52.381 12.10 0.00 0.00 2.85
64 65 1.070821 CTGATTTGCGCGAGTGAGAA 58.929 50.000 12.10 0.00 0.00 2.87
65 66 0.737367 CCTGATTTGCGCGAGTGAGA 60.737 55.000 12.10 0.00 0.00 3.27
66 67 0.737367 TCCTGATTTGCGCGAGTGAG 60.737 55.000 12.10 0.24 0.00 3.51
67 68 1.014044 GTCCTGATTTGCGCGAGTGA 61.014 55.000 12.10 0.00 0.00 3.41
68 69 1.016130 AGTCCTGATTTGCGCGAGTG 61.016 55.000 12.10 0.00 0.00 3.51
69 70 1.016130 CAGTCCTGATTTGCGCGAGT 61.016 55.000 12.10 0.00 0.00 4.18
70 71 1.712081 CAGTCCTGATTTGCGCGAG 59.288 57.895 12.10 0.00 0.00 5.03
71 72 2.390599 GCAGTCCTGATTTGCGCGA 61.391 57.895 12.10 0.00 0.00 5.87
72 73 1.985447 ATGCAGTCCTGATTTGCGCG 61.985 55.000 0.00 0.00 40.62 6.86
73 74 0.524816 CATGCAGTCCTGATTTGCGC 60.525 55.000 0.00 0.00 40.62 6.09
74 75 0.099968 CCATGCAGTCCTGATTTGCG 59.900 55.000 0.00 0.00 40.62 4.85
75 76 0.179119 GCCATGCAGTCCTGATTTGC 60.179 55.000 0.00 0.00 38.30 3.68
76 77 0.458669 GGCCATGCAGTCCTGATTTG 59.541 55.000 0.00 0.00 0.00 2.32
77 78 0.040058 TGGCCATGCAGTCCTGATTT 59.960 50.000 0.00 0.00 0.00 2.17
78 79 0.395311 CTGGCCATGCAGTCCTGATT 60.395 55.000 5.51 0.00 0.00 2.57
79 80 1.226542 CTGGCCATGCAGTCCTGAT 59.773 57.895 5.51 0.00 0.00 2.90
80 81 2.226315 ACTGGCCATGCAGTCCTGA 61.226 57.895 5.51 0.00 0.00 3.86
81 82 2.044555 CACTGGCCATGCAGTCCTG 61.045 63.158 5.51 0.00 0.00 3.86
82 83 2.353958 CACTGGCCATGCAGTCCT 59.646 61.111 5.51 0.00 0.00 3.85
83 84 3.446570 GCACTGGCCATGCAGTCC 61.447 66.667 25.80 2.04 42.88 3.85
95 96 4.274459 GTCTAATTGATTAGCCAGGCACTG 59.726 45.833 15.80 0.00 45.80 3.66
96 97 4.164988 AGTCTAATTGATTAGCCAGGCACT 59.835 41.667 15.80 0.00 39.60 4.40
97 98 4.274459 CAGTCTAATTGATTAGCCAGGCAC 59.726 45.833 15.80 2.54 39.60 5.01
98 99 4.164030 TCAGTCTAATTGATTAGCCAGGCA 59.836 41.667 15.80 0.00 39.60 4.75
99 100 4.708177 TCAGTCTAATTGATTAGCCAGGC 58.292 43.478 1.84 1.84 39.60 4.85
100 101 6.206243 CCAATCAGTCTAATTGATTAGCCAGG 59.794 42.308 0.00 0.00 41.91 4.45
101 102 6.293845 GCCAATCAGTCTAATTGATTAGCCAG 60.294 42.308 0.00 0.00 41.04 4.85
102 103 5.532406 GCCAATCAGTCTAATTGATTAGCCA 59.468 40.000 0.00 0.00 41.04 4.75
103 104 5.767168 AGCCAATCAGTCTAATTGATTAGCC 59.233 40.000 12.46 0.00 44.99 3.93
104 105 6.666417 CAGCCAATCAGTCTAATTGATTAGC 58.334 40.000 9.36 9.36 44.55 3.09
105 106 6.485984 AGCAGCCAATCAGTCTAATTGATTAG 59.514 38.462 0.00 4.70 41.91 1.73
106 107 6.359804 AGCAGCCAATCAGTCTAATTGATTA 58.640 36.000 0.00 0.00 41.91 1.75
107 108 5.198965 AGCAGCCAATCAGTCTAATTGATT 58.801 37.500 0.00 0.00 43.98 2.57
108 109 4.789807 AGCAGCCAATCAGTCTAATTGAT 58.210 39.130 0.00 0.00 36.43 2.57
109 110 4.080695 AGAGCAGCCAATCAGTCTAATTGA 60.081 41.667 0.00 0.00 36.43 2.57
110 111 4.197750 AGAGCAGCCAATCAGTCTAATTG 58.802 43.478 0.00 0.00 34.55 2.32
111 112 4.500499 AGAGCAGCCAATCAGTCTAATT 57.500 40.909 0.00 0.00 0.00 1.40
112 113 4.500499 AAGAGCAGCCAATCAGTCTAAT 57.500 40.909 0.00 0.00 0.00 1.73
113 114 3.988976 AAGAGCAGCCAATCAGTCTAA 57.011 42.857 0.00 0.00 0.00 2.10
114 115 3.603532 CAAAGAGCAGCCAATCAGTCTA 58.396 45.455 0.00 0.00 0.00 2.59
115 116 2.434428 CAAAGAGCAGCCAATCAGTCT 58.566 47.619 0.00 0.00 0.00 3.24
116 117 1.135460 GCAAAGAGCAGCCAATCAGTC 60.135 52.381 0.00 0.00 44.79 3.51
117 118 0.886563 GCAAAGAGCAGCCAATCAGT 59.113 50.000 0.00 0.00 44.79 3.41
118 119 3.715854 GCAAAGAGCAGCCAATCAG 57.284 52.632 0.00 0.00 44.79 2.90
128 129 2.721090 CAGCGTTAACTTTGCAAAGAGC 59.279 45.455 38.78 30.53 45.96 4.09
129 130 3.968724 GTCAGCGTTAACTTTGCAAAGAG 59.031 43.478 38.78 24.64 39.31 2.85
130 131 3.375610 TGTCAGCGTTAACTTTGCAAAGA 59.624 39.130 38.78 19.70 39.31 2.52
131 132 3.690422 TGTCAGCGTTAACTTTGCAAAG 58.310 40.909 32.53 32.53 41.73 2.77
132 133 3.766676 TGTCAGCGTTAACTTTGCAAA 57.233 38.095 12.14 12.14 0.00 3.68
133 134 3.313803 TCATGTCAGCGTTAACTTTGCAA 59.686 39.130 3.71 0.00 0.00 4.08
134 135 2.875317 TCATGTCAGCGTTAACTTTGCA 59.125 40.909 3.71 5.27 0.00 4.08
135 136 3.226347 GTCATGTCAGCGTTAACTTTGC 58.774 45.455 3.71 0.00 0.00 3.68
136 137 4.466567 TGTCATGTCAGCGTTAACTTTG 57.533 40.909 3.71 2.19 0.00 2.77
137 138 6.795098 TTATGTCATGTCAGCGTTAACTTT 57.205 33.333 3.71 0.00 0.00 2.66
138 139 6.795098 TTTATGTCATGTCAGCGTTAACTT 57.205 33.333 3.71 0.00 0.00 2.66
139 140 6.818644 AGATTTATGTCATGTCAGCGTTAACT 59.181 34.615 3.71 0.00 0.00 2.24
140 141 6.901887 CAGATTTATGTCATGTCAGCGTTAAC 59.098 38.462 0.00 0.00 0.00 2.01
141 142 6.816140 TCAGATTTATGTCATGTCAGCGTTAA 59.184 34.615 0.00 0.00 0.00 2.01
142 143 6.337356 TCAGATTTATGTCATGTCAGCGTTA 58.663 36.000 0.00 0.00 0.00 3.18
143 144 5.178061 TCAGATTTATGTCATGTCAGCGTT 58.822 37.500 0.00 0.00 0.00 4.84
144 145 4.758688 TCAGATTTATGTCATGTCAGCGT 58.241 39.130 0.00 0.00 0.00 5.07
145 146 5.919272 ATCAGATTTATGTCATGTCAGCG 57.081 39.130 0.00 0.00 0.00 5.18
146 147 7.605309 TCCATATCAGATTTATGTCATGTCAGC 59.395 37.037 0.00 0.00 0.00 4.26
147 148 8.933807 GTCCATATCAGATTTATGTCATGTCAG 58.066 37.037 0.00 0.00 0.00 3.51
148 149 8.431222 TGTCCATATCAGATTTATGTCATGTCA 58.569 33.333 0.00 0.00 0.00 3.58
149 150 8.837788 TGTCCATATCAGATTTATGTCATGTC 57.162 34.615 0.00 0.00 0.00 3.06
150 151 9.445878 GATGTCCATATCAGATTTATGTCATGT 57.554 33.333 0.00 0.00 0.00 3.21
151 152 8.601476 CGATGTCCATATCAGATTTATGTCATG 58.399 37.037 0.00 0.00 0.00 3.07
152 153 8.316946 ACGATGTCCATATCAGATTTATGTCAT 58.683 33.333 0.00 0.00 0.00 3.06
153 154 7.599998 CACGATGTCCATATCAGATTTATGTCA 59.400 37.037 0.00 0.00 0.00 3.58
154 155 7.412346 GCACGATGTCCATATCAGATTTATGTC 60.412 40.741 0.00 0.00 0.00 3.06
155 156 6.369890 GCACGATGTCCATATCAGATTTATGT 59.630 38.462 0.00 0.00 0.00 2.29
156 157 6.369615 TGCACGATGTCCATATCAGATTTATG 59.630 38.462 0.00 0.00 0.00 1.90
157 158 6.466812 TGCACGATGTCCATATCAGATTTAT 58.533 36.000 0.00 0.00 0.00 1.40
158 159 5.852827 TGCACGATGTCCATATCAGATTTA 58.147 37.500 0.00 0.00 0.00 1.40
159 160 4.707105 TGCACGATGTCCATATCAGATTT 58.293 39.130 0.00 0.00 0.00 2.17
160 161 4.341366 TGCACGATGTCCATATCAGATT 57.659 40.909 0.00 0.00 0.00 2.40
161 162 4.251268 CATGCACGATGTCCATATCAGAT 58.749 43.478 0.00 0.00 0.00 2.90
162 163 3.070015 ACATGCACGATGTCCATATCAGA 59.930 43.478 0.00 0.00 41.91 3.27
163 164 3.396560 ACATGCACGATGTCCATATCAG 58.603 45.455 0.00 0.00 41.91 2.90
164 165 3.473923 ACATGCACGATGTCCATATCA 57.526 42.857 0.00 0.00 41.91 2.15
165 166 5.696270 TCTTAACATGCACGATGTCCATATC 59.304 40.000 0.00 0.00 45.12 1.63
166 167 5.610398 TCTTAACATGCACGATGTCCATAT 58.390 37.500 0.00 0.00 45.12 1.78
167 168 5.017294 TCTTAACATGCACGATGTCCATA 57.983 39.130 0.00 0.00 45.12 2.74
168 169 3.872696 TCTTAACATGCACGATGTCCAT 58.127 40.909 0.00 0.00 45.12 3.41
169 170 3.056179 TCTCTTAACATGCACGATGTCCA 60.056 43.478 0.00 0.00 45.12 4.02
170 171 3.521560 TCTCTTAACATGCACGATGTCC 58.478 45.455 0.00 0.00 45.12 4.02
171 172 5.725110 ATTCTCTTAACATGCACGATGTC 57.275 39.130 0.00 0.00 45.12 3.06
173 174 5.985530 TCCTATTCTCTTAACATGCACGATG 59.014 40.000 0.00 0.00 38.15 3.84
174 175 6.161855 TCCTATTCTCTTAACATGCACGAT 57.838 37.500 0.00 0.00 0.00 3.73
175 176 5.592104 TCCTATTCTCTTAACATGCACGA 57.408 39.130 0.00 0.00 0.00 4.35
176 177 6.042777 TCTTCCTATTCTCTTAACATGCACG 58.957 40.000 0.00 0.00 0.00 5.34
177 178 7.550906 ACTTCTTCCTATTCTCTTAACATGCAC 59.449 37.037 0.00 0.00 0.00 4.57
178 179 7.550551 CACTTCTTCCTATTCTCTTAACATGCA 59.449 37.037 0.00 0.00 0.00 3.96
179 180 7.011857 CCACTTCTTCCTATTCTCTTAACATGC 59.988 40.741 0.00 0.00 0.00 4.06
180 181 8.260818 TCCACTTCTTCCTATTCTCTTAACATG 58.739 37.037 0.00 0.00 0.00 3.21
181 182 8.380742 TCCACTTCTTCCTATTCTCTTAACAT 57.619 34.615 0.00 0.00 0.00 2.71
182 183 7.792364 TCCACTTCTTCCTATTCTCTTAACA 57.208 36.000 0.00 0.00 0.00 2.41
183 184 9.503399 TTTTCCACTTCTTCCTATTCTCTTAAC 57.497 33.333 0.00 0.00 0.00 2.01
184 185 9.503399 GTTTTCCACTTCTTCCTATTCTCTTAA 57.497 33.333 0.00 0.00 0.00 1.85
185 186 8.656806 TGTTTTCCACTTCTTCCTATTCTCTTA 58.343 33.333 0.00 0.00 0.00 2.10
186 187 7.518188 TGTTTTCCACTTCTTCCTATTCTCTT 58.482 34.615 0.00 0.00 0.00 2.85
187 188 7.079451 TGTTTTCCACTTCTTCCTATTCTCT 57.921 36.000 0.00 0.00 0.00 3.10
188 189 7.445707 AGTTGTTTTCCACTTCTTCCTATTCTC 59.554 37.037 0.00 0.00 0.00 2.87
189 190 7.290813 AGTTGTTTTCCACTTCTTCCTATTCT 58.709 34.615 0.00 0.00 0.00 2.40
190 191 7.511959 AGTTGTTTTCCACTTCTTCCTATTC 57.488 36.000 0.00 0.00 0.00 1.75
191 192 7.898014 AAGTTGTTTTCCACTTCTTCCTATT 57.102 32.000 0.00 0.00 0.00 1.73
192 193 9.588096 AATAAGTTGTTTTCCACTTCTTCCTAT 57.412 29.630 0.00 0.00 0.00 2.57
193 194 8.990163 AATAAGTTGTTTTCCACTTCTTCCTA 57.010 30.769 0.00 0.00 0.00 2.94
194 195 7.898014 AATAAGTTGTTTTCCACTTCTTCCT 57.102 32.000 0.00 0.00 0.00 3.36
195 196 9.678941 CTTAATAAGTTGTTTTCCACTTCTTCC 57.321 33.333 0.00 0.00 0.00 3.46
251 252 6.368791 GGTTATGAATTTCTGGGTTGAAAAGC 59.631 38.462 0.00 0.00 45.23 3.51
252 253 7.441017 TGGTTATGAATTTCTGGGTTGAAAAG 58.559 34.615 0.00 0.00 39.08 2.27
253 254 7.366847 TGGTTATGAATTTCTGGGTTGAAAA 57.633 32.000 0.00 0.00 39.08 2.29
254 255 6.985653 TGGTTATGAATTTCTGGGTTGAAA 57.014 33.333 0.00 0.00 39.79 2.69
255 256 6.985653 TTGGTTATGAATTTCTGGGTTGAA 57.014 33.333 0.00 0.00 0.00 2.69
256 257 6.723515 TCATTGGTTATGAATTTCTGGGTTGA 59.276 34.615 0.00 0.00 40.29 3.18
257 258 6.934056 TCATTGGTTATGAATTTCTGGGTTG 58.066 36.000 0.00 0.00 40.29 3.77
258 259 7.399765 TGATCATTGGTTATGAATTTCTGGGTT 59.600 33.333 0.00 0.00 45.99 4.11
259 260 6.896860 TGATCATTGGTTATGAATTTCTGGGT 59.103 34.615 0.00 0.00 45.99 4.51
260 261 7.350744 TGATCATTGGTTATGAATTTCTGGG 57.649 36.000 0.00 0.00 45.99 4.45
261 262 8.472413 AGTTGATCATTGGTTATGAATTTCTGG 58.528 33.333 0.00 0.00 45.99 3.86
262 263 9.865321 AAGTTGATCATTGGTTATGAATTTCTG 57.135 29.630 0.00 0.00 45.99 3.02
267 268 9.559732 TCGATAAGTTGATCATTGGTTATGAAT 57.440 29.630 0.00 0.00 45.99 2.57
268 269 8.956533 TCGATAAGTTGATCATTGGTTATGAA 57.043 30.769 0.00 0.00 45.99 2.57
269 270 9.559732 AATCGATAAGTTGATCATTGGTTATGA 57.440 29.630 0.00 0.00 46.86 2.15
273 274 8.840321 CCTAAATCGATAAGTTGATCATTGGTT 58.160 33.333 0.00 0.00 0.00 3.67
274 275 8.210946 TCCTAAATCGATAAGTTGATCATTGGT 58.789 33.333 0.00 0.00 0.00 3.67
275 276 8.607441 TCCTAAATCGATAAGTTGATCATTGG 57.393 34.615 0.00 0.00 0.00 3.16
289 290 9.950496 AACATGCTTATTCTATCCTAAATCGAT 57.050 29.630 0.00 0.00 0.00 3.59
290 291 9.778741 AAACATGCTTATTCTATCCTAAATCGA 57.221 29.630 0.00 0.00 0.00 3.59
298 299 9.130312 CGTAGTCTAAACATGCTTATTCTATCC 57.870 37.037 0.00 0.00 0.00 2.59
299 300 9.894783 TCGTAGTCTAAACATGCTTATTCTATC 57.105 33.333 0.00 0.00 0.00 2.08
301 302 9.512435 GTTCGTAGTCTAAACATGCTTATTCTA 57.488 33.333 0.00 0.00 0.00 2.10
302 303 8.251721 AGTTCGTAGTCTAAACATGCTTATTCT 58.748 33.333 0.00 0.00 0.00 2.40
303 304 8.408743 AGTTCGTAGTCTAAACATGCTTATTC 57.591 34.615 0.00 0.00 0.00 1.75
304 305 8.656849 CAAGTTCGTAGTCTAAACATGCTTATT 58.343 33.333 0.00 0.00 0.00 1.40
305 306 7.817962 ACAAGTTCGTAGTCTAAACATGCTTAT 59.182 33.333 0.00 0.00 0.00 1.73
306 307 7.149973 ACAAGTTCGTAGTCTAAACATGCTTA 58.850 34.615 0.00 0.00 0.00 3.09
307 308 5.989777 ACAAGTTCGTAGTCTAAACATGCTT 59.010 36.000 0.00 0.00 0.00 3.91
308 309 5.539048 ACAAGTTCGTAGTCTAAACATGCT 58.461 37.500 0.00 0.00 0.00 3.79
309 310 5.840940 ACAAGTTCGTAGTCTAAACATGC 57.159 39.130 0.00 0.00 0.00 4.06
310 311 8.943925 CAAAAACAAGTTCGTAGTCTAAACATG 58.056 33.333 0.00 0.00 0.00 3.21
311 312 8.671028 ACAAAAACAAGTTCGTAGTCTAAACAT 58.329 29.630 0.00 0.00 0.00 2.71
312 313 7.958567 CACAAAAACAAGTTCGTAGTCTAAACA 59.041 33.333 0.00 0.00 0.00 2.83
313 314 8.170553 TCACAAAAACAAGTTCGTAGTCTAAAC 58.829 33.333 0.00 0.00 0.00 2.01
314 315 8.254178 TCACAAAAACAAGTTCGTAGTCTAAA 57.746 30.769 0.00 0.00 0.00 1.85
315 316 7.830940 TCACAAAAACAAGTTCGTAGTCTAA 57.169 32.000 0.00 0.00 0.00 2.10
316 317 8.971321 GTATCACAAAAACAAGTTCGTAGTCTA 58.029 33.333 0.00 0.00 0.00 2.59
317 318 6.920569 ATCACAAAAACAAGTTCGTAGTCT 57.079 33.333 0.00 0.00 0.00 3.24
318 319 7.848491 AGTATCACAAAAACAAGTTCGTAGTC 58.152 34.615 0.00 0.00 0.00 2.59
319 320 7.781548 AGTATCACAAAAACAAGTTCGTAGT 57.218 32.000 0.00 0.00 0.00 2.73
320 321 9.793245 CTTAGTATCACAAAAACAAGTTCGTAG 57.207 33.333 0.00 0.00 0.00 3.51
321 322 9.316730 ACTTAGTATCACAAAAACAAGTTCGTA 57.683 29.630 0.00 0.00 0.00 3.43
322 323 8.205131 ACTTAGTATCACAAAAACAAGTTCGT 57.795 30.769 0.00 0.00 0.00 3.85
323 324 9.498307 AAACTTAGTATCACAAAAACAAGTTCG 57.502 29.630 0.00 0.00 34.76 3.95
469 470 8.874816 GCCTAAAACAACTTTGATGTTACAAAA 58.125 29.630 0.00 0.00 39.98 2.44
470 471 7.492994 GGCCTAAAACAACTTTGATGTTACAAA 59.507 33.333 0.00 0.00 39.98 2.83
471 472 6.981559 GGCCTAAAACAACTTTGATGTTACAA 59.018 34.615 0.00 0.00 39.98 2.41
472 473 6.508777 GGCCTAAAACAACTTTGATGTTACA 58.491 36.000 0.00 0.00 39.98 2.41
473 474 5.627780 CGGCCTAAAACAACTTTGATGTTAC 59.372 40.000 0.00 0.00 39.98 2.50
474 475 5.299782 ACGGCCTAAAACAACTTTGATGTTA 59.700 36.000 0.00 0.00 39.98 2.41
475 476 4.098807 ACGGCCTAAAACAACTTTGATGTT 59.901 37.500 0.00 0.00 42.56 2.71
476 477 3.634910 ACGGCCTAAAACAACTTTGATGT 59.365 39.130 0.00 0.00 0.00 3.06
477 478 3.980775 CACGGCCTAAAACAACTTTGATG 59.019 43.478 0.00 0.00 0.00 3.07
478 479 3.552068 GCACGGCCTAAAACAACTTTGAT 60.552 43.478 0.00 0.00 0.00 2.57
479 480 2.223618 GCACGGCCTAAAACAACTTTGA 60.224 45.455 0.00 0.00 0.00 2.69
480 481 2.124122 GCACGGCCTAAAACAACTTTG 58.876 47.619 0.00 0.00 0.00 2.77
481 482 2.028876 AGCACGGCCTAAAACAACTTT 58.971 42.857 0.00 0.00 0.00 2.66
482 483 1.687563 AGCACGGCCTAAAACAACTT 58.312 45.000 0.00 0.00 0.00 2.66
483 484 1.336755 CAAGCACGGCCTAAAACAACT 59.663 47.619 0.00 0.00 0.00 3.16
484 485 1.601914 CCAAGCACGGCCTAAAACAAC 60.602 52.381 0.00 0.00 0.00 3.32
485 486 0.671251 CCAAGCACGGCCTAAAACAA 59.329 50.000 0.00 0.00 0.00 2.83
486 487 1.175983 CCCAAGCACGGCCTAAAACA 61.176 55.000 0.00 0.00 0.00 2.83
487 488 0.891904 TCCCAAGCACGGCCTAAAAC 60.892 55.000 0.00 0.00 0.00 2.43
488 489 0.039035 ATCCCAAGCACGGCCTAAAA 59.961 50.000 0.00 0.00 0.00 1.52
489 490 0.913205 TATCCCAAGCACGGCCTAAA 59.087 50.000 0.00 0.00 0.00 1.85
490 491 0.468226 CTATCCCAAGCACGGCCTAA 59.532 55.000 0.00 0.00 0.00 2.69
491 492 0.397957 TCTATCCCAAGCACGGCCTA 60.398 55.000 0.00 0.00 0.00 3.93
492 493 1.056700 ATCTATCCCAAGCACGGCCT 61.057 55.000 0.00 0.00 0.00 5.19
493 494 0.886490 CATCTATCCCAAGCACGGCC 60.886 60.000 0.00 0.00 0.00 6.13
494 495 0.179045 ACATCTATCCCAAGCACGGC 60.179 55.000 0.00 0.00 0.00 5.68
495 496 3.685139 ATACATCTATCCCAAGCACGG 57.315 47.619 0.00 0.00 0.00 4.94
496 497 5.296780 ACAAAATACATCTATCCCAAGCACG 59.703 40.000 0.00 0.00 0.00 5.34
497 498 6.699575 ACAAAATACATCTATCCCAAGCAC 57.300 37.500 0.00 0.00 0.00 4.40
498 499 6.481976 CGTACAAAATACATCTATCCCAAGCA 59.518 38.462 0.00 0.00 0.00 3.91
499 500 6.073222 CCGTACAAAATACATCTATCCCAAGC 60.073 42.308 0.00 0.00 0.00 4.01
500 501 6.426937 CCCGTACAAAATACATCTATCCCAAG 59.573 42.308 0.00 0.00 0.00 3.61
501 502 6.292923 CCCGTACAAAATACATCTATCCCAA 58.707 40.000 0.00 0.00 0.00 4.12
502 503 5.221762 CCCCGTACAAAATACATCTATCCCA 60.222 44.000 0.00 0.00 0.00 4.37
503 504 5.243207 CCCCGTACAAAATACATCTATCCC 58.757 45.833 0.00 0.00 0.00 3.85
504 505 5.221783 ACCCCCGTACAAAATACATCTATCC 60.222 44.000 0.00 0.00 0.00 2.59
505 506 5.699458 CACCCCCGTACAAAATACATCTATC 59.301 44.000 0.00 0.00 0.00 2.08
506 507 5.131475 ACACCCCCGTACAAAATACATCTAT 59.869 40.000 0.00 0.00 0.00 1.98
507 508 4.470664 ACACCCCCGTACAAAATACATCTA 59.529 41.667 0.00 0.00 0.00 1.98
508 509 3.264964 ACACCCCCGTACAAAATACATCT 59.735 43.478 0.00 0.00 0.00 2.90
509 510 3.613030 ACACCCCCGTACAAAATACATC 58.387 45.455 0.00 0.00 0.00 3.06
510 511 3.724732 ACACCCCCGTACAAAATACAT 57.275 42.857 0.00 0.00 0.00 2.29
511 512 4.630644 TTACACCCCCGTACAAAATACA 57.369 40.909 0.00 0.00 0.00 2.29
512 513 5.473162 AGTTTTACACCCCCGTACAAAATAC 59.527 40.000 0.00 0.00 0.00 1.89
513 514 5.629125 AGTTTTACACCCCCGTACAAAATA 58.371 37.500 0.00 0.00 0.00 1.40
514 515 4.472496 AGTTTTACACCCCCGTACAAAAT 58.528 39.130 0.00 0.00 0.00 1.82
515 516 3.895998 AGTTTTACACCCCCGTACAAAA 58.104 40.909 0.00 0.00 0.00 2.44
516 517 3.574354 AGTTTTACACCCCCGTACAAA 57.426 42.857 0.00 0.00 0.00 2.83
517 518 3.574354 AAGTTTTACACCCCCGTACAA 57.426 42.857 0.00 0.00 0.00 2.41
518 519 3.553922 CGTAAGTTTTACACCCCCGTACA 60.554 47.826 0.00 0.00 0.00 2.90
519 520 2.993220 CGTAAGTTTTACACCCCCGTAC 59.007 50.000 0.56 0.00 0.00 3.67
520 521 3.311486 CGTAAGTTTTACACCCCCGTA 57.689 47.619 0.56 0.00 0.00 4.02
521 522 2.168326 CGTAAGTTTTACACCCCCGT 57.832 50.000 0.56 0.00 0.00 5.28
536 537 3.932545 ACCGGTAACATACACACGTAA 57.067 42.857 4.49 0.00 0.00 3.18
537 538 3.181501 GCTACCGGTAACATACACACGTA 60.182 47.826 16.65 0.00 0.00 3.57
538 539 2.415893 GCTACCGGTAACATACACACGT 60.416 50.000 16.65 0.00 0.00 4.49
539 540 2.159338 AGCTACCGGTAACATACACACG 60.159 50.000 16.65 0.63 0.00 4.49
540 541 3.515330 AGCTACCGGTAACATACACAC 57.485 47.619 16.65 0.00 0.00 3.82
541 542 4.247258 CAAAGCTACCGGTAACATACACA 58.753 43.478 16.65 0.00 0.00 3.72
542 543 4.248058 ACAAAGCTACCGGTAACATACAC 58.752 43.478 16.65 0.00 0.00 2.90
543 544 4.540359 ACAAAGCTACCGGTAACATACA 57.460 40.909 16.65 0.00 0.00 2.29
544 545 7.543947 AAATACAAAGCTACCGGTAACATAC 57.456 36.000 16.65 3.13 0.00 2.39
545 546 8.564509 AAAAATACAAAGCTACCGGTAACATA 57.435 30.769 16.65 3.60 0.00 2.29
546 547 7.457024 AAAAATACAAAGCTACCGGTAACAT 57.543 32.000 16.65 0.53 0.00 2.71
547 548 6.880942 AAAAATACAAAGCTACCGGTAACA 57.119 33.333 16.65 0.00 0.00 2.41
569 570 6.127394 GGGCAAAAGGATAATTAACCCGTAAA 60.127 38.462 8.09 0.00 0.00 2.01
572 573 3.702548 GGGCAAAAGGATAATTAACCCGT 59.297 43.478 8.09 0.00 0.00 5.28
573 574 3.958147 AGGGCAAAAGGATAATTAACCCG 59.042 43.478 8.09 0.00 39.89 5.28
631 634 5.127682 AGGGGCAAAACTGAGCATAATAAAG 59.872 40.000 0.00 0.00 0.00 1.85
633 636 4.609301 AGGGGCAAAACTGAGCATAATAA 58.391 39.130 0.00 0.00 0.00 1.40
634 637 4.249638 AGGGGCAAAACTGAGCATAATA 57.750 40.909 0.00 0.00 0.00 0.98
638 641 1.355720 ACTAGGGGCAAAACTGAGCAT 59.644 47.619 0.00 0.00 0.00 3.79
660 663 1.590525 GAACGAGTCGGTGCACACA 60.591 57.895 20.43 0.13 0.00 3.72
752 755 4.279671 TGCAACGGTCTGAATAAAATTGGT 59.720 37.500 0.00 0.00 0.00 3.67
851 854 2.898343 GTGGTCACCGCCGTTGTT 60.898 61.111 0.00 0.00 0.00 2.83
934 961 1.450531 GCTAGCTTCCTACCGCCGTA 61.451 60.000 7.70 0.00 0.00 4.02
943 970 0.980231 CCCTCCACAGCTAGCTTCCT 60.980 60.000 16.46 0.00 0.00 3.36
1125 1153 1.189403 CGTAGAACGGACGATTCTGC 58.811 55.000 14.97 13.29 42.98 4.26
1236 1266 4.320788 CCAAAGAAAGAAGCATGTCACCTC 60.321 45.833 0.00 0.00 0.00 3.85
1266 1296 1.554160 CATCAGAGTCTTGGCCAGAGT 59.446 52.381 5.11 8.92 37.96 3.24
1351 1381 1.065636 TCTCTTCTTCCGGAGCTCGTA 60.066 52.381 3.34 0.00 37.11 3.43
1415 1445 6.044404 TCCTAACCTTCTTCTTCAACATCCTT 59.956 38.462 0.00 0.00 0.00 3.36
1494 1524 5.049680 CCAATGCGATTACCATACCTACAAC 60.050 44.000 0.00 0.00 0.00 3.32
1672 1705 6.183347 TGAATTCCTCATTTCTTCTCCCTTC 58.817 40.000 2.27 0.00 0.00 3.46
1776 1811 1.591703 CCTGCACTTGGCTCTACGA 59.408 57.895 0.00 0.00 45.15 3.43
1817 1852 2.732289 CCGAATGGGCCTAATTGGG 58.268 57.895 14.89 14.89 36.00 4.12
1888 1924 6.700960 CCACAAAAAGTTTCAGCATTGTGATA 59.299 34.615 22.76 0.00 46.40 2.15
1893 1929 5.502869 GCTTCCACAAAAAGTTTCAGCATTG 60.503 40.000 0.00 0.00 0.00 2.82
2040 2079 3.054139 AGAGCTGAGGCACATTTTCCATA 60.054 43.478 0.00 0.00 41.70 2.74
2185 2229 2.345760 GCGGTCCTGGGTTCGAGTA 61.346 63.158 8.05 0.00 0.00 2.59
2217 2261 2.949644 GGTTATCAGCGCAACCCTAAAT 59.050 45.455 11.47 0.00 38.63 1.40
2233 2277 1.837439 TCCATCTGTCCTTGCGGTTAT 59.163 47.619 0.00 0.00 0.00 1.89
2241 2285 6.601332 TGTTAAAGTCTTTCCATCTGTCCTT 58.399 36.000 0.00 0.00 0.00 3.36
2262 2306 4.675063 ACATTCCTTTCCTACCCATGTT 57.325 40.909 0.00 0.00 0.00 2.71
2274 2318 8.861086 ACGATCTCACTATGTATACATTCCTTT 58.139 33.333 22.90 1.63 37.76 3.11
2297 2341 2.466870 GTGTGTGCAAACATTCACGA 57.533 45.000 14.04 0.00 36.06 4.35
2327 2382 6.867662 TTTCAGTGCAAAACAAAGGAAAAA 57.132 29.167 0.00 0.00 0.00 1.94
2356 2411 4.346418 TGCAAACATACATTTCCAACCCTT 59.654 37.500 0.00 0.00 0.00 3.95
2368 2439 1.979855 AGTGGCAGTGCAAACATACA 58.020 45.000 18.61 0.07 0.00 2.29
2387 2458 2.712087 TGCCACTCTAACCCTAAACCAA 59.288 45.455 0.00 0.00 0.00 3.67
2394 2465 0.693049 CCAAGTGCCACTCTAACCCT 59.307 55.000 0.00 0.00 0.00 4.34
2395 2466 0.400594 ACCAAGTGCCACTCTAACCC 59.599 55.000 0.00 0.00 0.00 4.11
2467 2565 3.013219 GGTGAGAAGCCCTCTTTCATTC 58.987 50.000 5.47 0.00 42.44 2.67
2469 2567 1.283321 GGGTGAGAAGCCCTCTTTCAT 59.717 52.381 5.47 0.00 42.81 2.57
2470 2568 0.693049 GGGTGAGAAGCCCTCTTTCA 59.307 55.000 5.47 0.00 42.81 2.69
2471 2569 0.034960 GGGGTGAGAAGCCCTCTTTC 60.035 60.000 5.73 0.00 45.39 2.62
2524 2623 5.070001 CCCTAAACCAAGTCATGAAGTTCA 58.930 41.667 8.27 8.27 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.