Multiple sequence alignment - TraesCS7A01G061800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G061800 chr7A 100.000 2726 0 0 1 2726 30664787 30662062 0.000000e+00 5035
1 TraesCS7A01G061800 chr7A 98.387 186 2 1 2436 2620 323738631 323738816 2.620000e-85 326
2 TraesCS7A01G061800 chr7A 97.826 184 2 1 2436 2617 438151463 438151646 1.580000e-82 316
3 TraesCS7A01G061800 chr4A 86.803 1667 145 44 61 1689 698902484 698904113 0.000000e+00 1790
4 TraesCS7A01G061800 chr4A 93.428 1126 72 2 1066 2190 698130479 698131603 0.000000e+00 1668
5 TraesCS7A01G061800 chr4A 98.352 182 2 1 2440 2620 420020373 420020554 4.380000e-83 318
6 TraesCS7A01G061800 chr4A 85.714 175 22 2 2249 2423 698904665 698904836 6.000000e-42 182
7 TraesCS7A01G061800 chr3A 81.429 1190 195 22 950 2122 606429176 606430356 0.000000e+00 950
8 TraesCS7A01G061800 chr3A 97.326 187 3 2 2436 2620 724319118 724318932 1.580000e-82 316
9 TraesCS7A01G061800 chr3A 76.642 411 50 26 276 664 606428431 606428817 4.640000e-43 185
10 TraesCS7A01G061800 chr3B 78.184 1476 255 44 950 2386 616258744 616260191 0.000000e+00 880
11 TraesCS7A01G061800 chr3B 75.294 425 54 31 272 664 616257884 616258289 3.630000e-34 156
12 TraesCS7A01G061800 chr2A 78.894 886 158 20 1185 2053 31015506 31016379 8.470000e-160 573
13 TraesCS7A01G061800 chrUn 81.066 713 126 6 1037 1742 17017746 17017036 6.590000e-156 560
14 TraesCS7A01G061800 chrUn 80.926 713 127 6 1037 1742 381001281 381000571 3.070000e-154 555
15 TraesCS7A01G061800 chr5B 98.907 183 1 1 2439 2620 147439818 147439636 2.620000e-85 326
16 TraesCS7A01G061800 chr7B 98.370 184 2 1 2438 2620 690699594 690699411 3.390000e-84 322
17 TraesCS7A01G061800 chr4B 98.370 184 1 2 2439 2620 588431005 588430822 3.390000e-84 322
18 TraesCS7A01G061800 chr5A 98.352 182 2 1 2440 2620 664553028 664552847 4.380000e-83 318
19 TraesCS7A01G061800 chr1B 96.335 191 5 2 2431 2620 309519080 309518891 2.040000e-81 313
20 TraesCS7A01G061800 chr3D 78.092 283 39 12 401 664 462864753 462864475 1.010000e-34 158
21 TraesCS7A01G061800 chr3D 77.739 283 40 12 401 664 463182270 463182548 4.700000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G061800 chr7A 30662062 30664787 2725 True 5035.0 5035 100.0000 1 2726 1 chr7A.!!$R1 2725
1 TraesCS7A01G061800 chr4A 698130479 698131603 1124 False 1668.0 1668 93.4280 1066 2190 1 chr4A.!!$F2 1124
2 TraesCS7A01G061800 chr4A 698902484 698904836 2352 False 986.0 1790 86.2585 61 2423 2 chr4A.!!$F3 2362
3 TraesCS7A01G061800 chr3A 606428431 606430356 1925 False 567.5 950 79.0355 276 2122 2 chr3A.!!$F1 1846
4 TraesCS7A01G061800 chr3B 616257884 616260191 2307 False 518.0 880 76.7390 272 2386 2 chr3B.!!$F1 2114
5 TraesCS7A01G061800 chr2A 31015506 31016379 873 False 573.0 573 78.8940 1185 2053 1 chr2A.!!$F1 868
6 TraesCS7A01G061800 chrUn 17017036 17017746 710 True 560.0 560 81.0660 1037 1742 1 chrUn.!!$R1 705
7 TraesCS7A01G061800 chrUn 381000571 381001281 710 True 555.0 555 80.9260 1037 1742 1 chrUn.!!$R2 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.041684 TCAGCACCTCCCATCTCTGA 59.958 55.0 0.00 0.0 0.00 3.27 F
863 1083 0.111061 AGCATCCAACTTGTGCAGGA 59.889 50.0 7.02 0.0 41.19 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 2000 1.047034 GGCCCGGAGTAGGAAAGCTA 61.047 60.0 0.73 0.00 0.0 3.32 R
2610 2943 0.034089 GAAAGGGAGTGGGACCATGG 60.034 60.0 11.19 11.19 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.566261 CACTCACACGTGGATGCC 58.434 61.111 21.57 0.00 0.00 4.40
37 38 1.301637 CACTCACACGTGGATGCCA 60.302 57.895 21.57 0.00 0.00 4.92
45 46 2.358615 GTGGATGCCACGTCAGCA 60.359 61.111 11.88 11.88 44.95 4.41
46 47 2.358615 TGGATGCCACGTCAGCAC 60.359 61.111 11.74 6.55 44.40 4.40
47 48 3.127533 GGATGCCACGTCAGCACC 61.128 66.667 11.74 11.13 44.40 5.01
48 49 2.046892 GATGCCACGTCAGCACCT 60.047 61.111 11.74 0.00 44.40 4.00
49 50 2.046892 ATGCCACGTCAGCACCTC 60.047 61.111 11.74 0.00 44.40 3.85
50 51 3.612247 ATGCCACGTCAGCACCTCC 62.612 63.158 11.74 0.00 44.40 4.30
52 53 3.625897 CCACGTCAGCACCTCCCA 61.626 66.667 0.00 0.00 0.00 4.37
53 54 2.665000 CACGTCAGCACCTCCCAT 59.335 61.111 0.00 0.00 0.00 4.00
54 55 1.448540 CACGTCAGCACCTCCCATC 60.449 63.158 0.00 0.00 0.00 3.51
55 56 1.610673 ACGTCAGCACCTCCCATCT 60.611 57.895 0.00 0.00 0.00 2.90
56 57 1.142748 CGTCAGCACCTCCCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
57 58 1.326213 CGTCAGCACCTCCCATCTCT 61.326 60.000 0.00 0.00 0.00 3.10
58 59 0.177604 GTCAGCACCTCCCATCTCTG 59.822 60.000 0.00 0.00 0.00 3.35
59 60 0.041684 TCAGCACCTCCCATCTCTGA 59.958 55.000 0.00 0.00 0.00 3.27
95 96 3.615056 CGTAATCGTATCACTTGCACCAA 59.385 43.478 0.00 0.00 0.00 3.67
108 109 5.295292 CACTTGCACCAAGATTATGGACTAG 59.705 44.000 11.56 0.00 43.42 2.57
113 114 5.053145 CACCAAGATTATGGACTAGACTGC 58.947 45.833 0.00 0.00 43.54 4.40
118 121 7.284034 CCAAGATTATGGACTAGACTGCAATTT 59.716 37.037 0.00 0.00 43.54 1.82
120 123 9.905713 AAGATTATGGACTAGACTGCAATTTTA 57.094 29.630 0.00 0.00 0.00 1.52
140 143 3.051081 AGAGTGAATGGACTGAAGTGC 57.949 47.619 0.00 0.00 36.87 4.40
150 153 2.742053 GGACTGAAGTGCGCATCTTAAA 59.258 45.455 15.91 9.82 0.00 1.52
163 166 5.502544 GCGCATCTTAAACTAGTTCATGGAC 60.503 44.000 8.95 0.00 0.00 4.02
167 170 7.067494 GCATCTTAAACTAGTTCATGGACCAAT 59.933 37.037 8.95 0.00 0.00 3.16
169 172 7.458397 TCTTAAACTAGTTCATGGACCAATGT 58.542 34.615 8.95 0.00 0.00 2.71
180 183 3.505386 TGGACCAATGTGGCATTTTACT 58.495 40.909 0.00 0.00 42.67 2.24
181 184 3.509575 TGGACCAATGTGGCATTTTACTC 59.490 43.478 0.00 0.00 42.67 2.59
183 186 2.831526 ACCAATGTGGCATTTTACTCCC 59.168 45.455 0.00 0.00 42.67 4.30
185 188 1.762708 ATGTGGCATTTTACTCCCGG 58.237 50.000 0.00 0.00 0.00 5.73
186 189 0.693622 TGTGGCATTTTACTCCCGGA 59.306 50.000 0.73 0.00 0.00 5.14
189 201 1.843851 TGGCATTTTACTCCCGGAGAT 59.156 47.619 21.89 7.98 33.32 2.75
193 205 3.477530 CATTTTACTCCCGGAGATTCCC 58.522 50.000 21.89 0.00 31.13 3.97
198 210 1.382695 TCCCGGAGATTCCCCACTC 60.383 63.158 0.73 0.00 31.13 3.51
225 237 3.370231 GCCGCCGTCCACCAAATT 61.370 61.111 0.00 0.00 0.00 1.82
226 238 2.041686 GCCGCCGTCCACCAAATTA 61.042 57.895 0.00 0.00 0.00 1.40
227 239 1.988834 GCCGCCGTCCACCAAATTAG 61.989 60.000 0.00 0.00 0.00 1.73
228 240 1.427819 CGCCGTCCACCAAATTAGC 59.572 57.895 0.00 0.00 0.00 3.09
229 241 1.302383 CGCCGTCCACCAAATTAGCA 61.302 55.000 0.00 0.00 0.00 3.49
230 242 0.885196 GCCGTCCACCAAATTAGCAA 59.115 50.000 0.00 0.00 0.00 3.91
231 243 1.402325 GCCGTCCACCAAATTAGCAAC 60.402 52.381 0.00 0.00 0.00 4.17
232 244 2.159382 CCGTCCACCAAATTAGCAACT 58.841 47.619 0.00 0.00 0.00 3.16
233 245 2.556622 CCGTCCACCAAATTAGCAACTT 59.443 45.455 0.00 0.00 0.00 2.66
234 246 3.005367 CCGTCCACCAAATTAGCAACTTT 59.995 43.478 0.00 0.00 0.00 2.66
235 247 3.980775 CGTCCACCAAATTAGCAACTTTG 59.019 43.478 0.00 0.00 33.20 2.77
244 256 2.563427 GCAACTTTGCGCCTCTCC 59.437 61.111 4.18 0.00 45.11 3.71
245 257 2.863153 CAACTTTGCGCCTCTCCG 59.137 61.111 4.18 0.00 0.00 4.63
322 349 1.373497 GAGATACGGCCGCATCTGG 60.373 63.158 38.96 7.86 31.63 3.86
334 361 1.522355 CATCTGGGCGCATCTCGTT 60.522 57.895 10.83 0.00 41.07 3.85
342 369 2.397252 GCATCTCGTTGCGCTGAC 59.603 61.111 9.73 6.69 32.06 3.51
447 490 2.588034 GCTGGGAATCCGTACGCC 60.588 66.667 10.49 5.34 35.24 5.68
472 519 3.134458 CAGCGAATTGATAAGTCCCTCC 58.866 50.000 0.00 0.00 0.00 4.30
504 551 5.637810 TGTTTGCTCTCTACAAATTCCGTAG 59.362 40.000 8.15 8.15 39.09 3.51
506 553 5.046878 TTTGCTCTCTACAAATTCCGTAGGA 60.047 40.000 12.62 9.10 43.29 2.94
535 587 5.957842 AATTGGTTGAAATCTTGCGACTA 57.042 34.783 0.00 0.00 0.00 2.59
553 616 4.443725 CGACTAGTTAGCATCTGCAATCTG 59.556 45.833 4.79 0.00 45.16 2.90
554 617 5.350504 ACTAGTTAGCATCTGCAATCTGT 57.649 39.130 4.79 0.00 45.16 3.41
562 625 0.532573 TCTGCAATCTGTCCGTCTCC 59.467 55.000 0.00 0.00 0.00 3.71
563 626 0.247460 CTGCAATCTGTCCGTCTCCA 59.753 55.000 0.00 0.00 0.00 3.86
566 629 0.898320 CAATCTGTCCGTCTCCACCT 59.102 55.000 0.00 0.00 0.00 4.00
661 736 8.834465 GCATATAGCATATTATAGCAGCAACTT 58.166 33.333 0.00 0.00 44.79 2.66
665 740 9.896645 ATAGCATATTATAGCAGCAACTTGTAT 57.103 29.630 0.00 0.00 0.00 2.29
668 815 8.173775 GCATATTATAGCAGCAACTTGTATCAG 58.826 37.037 0.00 0.00 0.00 2.90
684 831 9.814899 ACTTGTATCAGAGCATATTATATCAGC 57.185 33.333 0.00 0.00 0.00 4.26
685 832 9.813446 CTTGTATCAGAGCATATTATATCAGCA 57.187 33.333 0.00 0.00 0.00 4.41
717 864 7.067129 CCACTAGTATCTGCTGTTAGTACTTCA 59.933 40.741 0.00 0.26 0.00 3.02
729 876 7.227512 GCTGTTAGTACTTCAATTGGAGCATAT 59.772 37.037 14.03 0.47 0.00 1.78
772 919 5.586243 TGCCTGCAGAATTAACTAGTTGATC 59.414 40.000 17.39 12.55 0.00 2.92
803 982 2.096980 ACGACGACTTATTCTCATCGCA 59.903 45.455 0.00 0.00 38.12 5.10
843 1063 1.506025 TGGGCAGCCATCATACACTA 58.494 50.000 15.19 0.00 0.00 2.74
859 1079 2.554032 ACACTAAGCATCCAACTTGTGC 59.446 45.455 0.00 0.00 39.10 4.57
860 1080 2.553602 CACTAAGCATCCAACTTGTGCA 59.446 45.455 7.02 0.00 41.19 4.57
861 1081 2.816087 ACTAAGCATCCAACTTGTGCAG 59.184 45.455 7.02 0.65 41.19 4.41
862 1082 0.963962 AAGCATCCAACTTGTGCAGG 59.036 50.000 7.02 0.00 41.19 4.85
863 1083 0.111061 AGCATCCAACTTGTGCAGGA 59.889 50.000 7.02 0.00 41.19 3.86
864 1084 0.961019 GCATCCAACTTGTGCAGGAA 59.039 50.000 0.00 0.00 38.68 3.36
865 1085 1.068055 GCATCCAACTTGTGCAGGAAG 60.068 52.381 4.21 4.21 38.68 3.46
866 1086 2.233271 CATCCAACTTGTGCAGGAAGT 58.767 47.619 5.39 5.39 35.08 3.01
896 1125 3.250816 ACCCAGTGGTGGTGAACTA 57.749 52.632 8.74 0.00 45.58 2.24
900 1129 1.691976 CCAGTGGTGGTGAACTAGTGA 59.308 52.381 0.00 0.00 41.92 3.41
964 1235 0.617413 AGTGGCAGTGGAAGATCTGG 59.383 55.000 0.00 0.00 32.94 3.86
982 1253 1.012841 GGCGAGCAAGGAAGATTCAG 58.987 55.000 0.00 0.00 0.00 3.02
995 1266 1.470098 AGATTCAGCAACGATTGTGGC 59.530 47.619 4.02 4.02 46.04 5.01
1020 1291 1.228228 GGCCTCCAGCATCCATGAA 59.772 57.895 0.00 0.00 46.50 2.57
1029 1300 1.064240 AGCATCCATGAATCCACTGCA 60.064 47.619 0.00 0.00 0.00 4.41
1032 1303 3.284617 CATCCATGAATCCACTGCAGAA 58.715 45.455 23.35 5.64 0.00 3.02
1035 1306 1.747355 CATGAATCCACTGCAGAACCC 59.253 52.381 23.35 4.76 0.00 4.11
1107 1379 1.202806 TGGCAGGACTTGGAGTTTCTG 60.203 52.381 0.00 7.54 34.87 3.02
1215 1487 0.660005 GCATCAACAAAAGCGCGTCA 60.660 50.000 8.43 0.00 0.00 4.35
1267 1539 5.464168 CATTTCTTAACCTGCCTTCAACTG 58.536 41.667 0.00 0.00 0.00 3.16
1270 1542 1.604604 TAACCTGCCTTCAACTGTGC 58.395 50.000 0.00 0.00 0.00 4.57
1287 1562 2.359169 GCCGTCACTCCTGGATGGA 61.359 63.158 0.00 0.00 42.86 3.41
1362 1639 2.289882 TGATGGCTTCTTGAGGAGTGTG 60.290 50.000 1.86 0.00 0.00 3.82
1367 1644 2.760374 CTTCTTGAGGAGTGTGGACAC 58.240 52.381 1.42 1.42 46.77 3.67
1525 1802 5.696724 AGTGTTAACAGAGTGAAGGAATTCG 59.303 40.000 8.98 0.00 0.00 3.34
1617 1894 4.400567 GTCAAGCTGCTAATGGAGGAAAAT 59.599 41.667 0.90 0.00 31.89 1.82
1633 1910 4.079253 GGAAAATTCAGAGTTGGCCAGTA 58.921 43.478 5.11 0.00 0.00 2.74
1668 1945 1.270907 CTTCACCTCTGTACCTGGCT 58.729 55.000 0.00 0.00 0.00 4.75
1791 2068 1.000506 GTTCTTCGAGGCACAGGTACA 59.999 52.381 0.00 0.00 0.00 2.90
1836 2113 7.713750 TCTTTTATATCTGACTTGACCTACCG 58.286 38.462 0.00 0.00 0.00 4.02
1846 2123 2.851263 TGACCTACCGTTTTCTGCAT 57.149 45.000 0.00 0.00 0.00 3.96
1921 2199 4.159244 TGTACAAGTGTAGTTTTGCCCT 57.841 40.909 0.00 0.00 0.00 5.19
1927 2205 5.596772 ACAAGTGTAGTTTTGCCCTGTAAAT 59.403 36.000 0.00 0.00 0.00 1.40
1931 2209 7.561251 AGTGTAGTTTTGCCCTGTAAATTTTT 58.439 30.769 0.00 0.00 0.00 1.94
1932 2210 7.494298 AGTGTAGTTTTGCCCTGTAAATTTTTG 59.506 33.333 0.00 0.00 0.00 2.44
1944 2222 9.282569 CCCTGTAAATTTTTGGAAAATTCATCA 57.717 29.630 10.70 9.47 0.00 3.07
2003 2288 3.307199 CCTTTACCTTTCCGCTAACCTGA 60.307 47.826 0.00 0.00 0.00 3.86
2012 2297 1.396996 CCGCTAACCTGATTTGTTCCG 59.603 52.381 0.00 0.00 0.00 4.30
2053 2342 9.959721 TTGATATAATCCCCTGAGCTAATAAAC 57.040 33.333 0.00 0.00 0.00 2.01
2180 2472 5.196341 ACGACACATCACTCTTGTTCTTA 57.804 39.130 0.00 0.00 0.00 2.10
2181 2473 5.784177 ACGACACATCACTCTTGTTCTTAT 58.216 37.500 0.00 0.00 0.00 1.73
2190 2482 8.944029 CATCACTCTTGTTCTTATTGAGACAAT 58.056 33.333 0.00 0.00 33.02 2.71
2265 2598 2.408050 CACAGAGTAAGGATATGCCGC 58.592 52.381 0.00 0.00 43.43 6.53
2272 2605 1.959042 AAGGATATGCCGCTCTTGTG 58.041 50.000 0.00 0.00 43.43 3.33
2294 2627 6.039270 TGTGTGCTTTGCTAGTTTGTAAGAAT 59.961 34.615 0.00 0.00 0.00 2.40
2371 2704 3.758554 CCCAAGTGTTGAGAAAGGTATGG 59.241 47.826 0.00 0.00 0.00 2.74
2388 2721 1.078426 GGTACCAAGCCGCAGTGAT 60.078 57.895 7.15 0.00 0.00 3.06
2389 2722 1.369091 GGTACCAAGCCGCAGTGATG 61.369 60.000 7.15 0.00 0.00 3.07
2408 2741 3.325753 GGTCCTCTGCTGGGCTGT 61.326 66.667 0.00 0.00 0.00 4.40
2412 2745 2.288778 CCTCTGCTGGGCTGTCTGA 61.289 63.158 0.00 0.00 0.00 3.27
2431 2764 2.777536 TCTGCAAGATGGTCCCACT 58.222 52.632 0.00 0.00 38.67 4.00
2432 2765 0.615331 TCTGCAAGATGGTCCCACTC 59.385 55.000 0.00 0.00 38.67 3.51
2433 2766 0.393537 CTGCAAGATGGTCCCACTCC 60.394 60.000 0.00 0.00 34.07 3.85
2434 2767 1.077429 GCAAGATGGTCCCACTCCC 60.077 63.158 0.00 0.00 0.00 4.30
2435 2768 1.566298 GCAAGATGGTCCCACTCCCT 61.566 60.000 0.00 0.00 0.00 4.20
2436 2769 0.995024 CAAGATGGTCCCACTCCCTT 59.005 55.000 0.00 0.00 0.00 3.95
2437 2770 1.355720 CAAGATGGTCCCACTCCCTTT 59.644 52.381 0.00 0.00 0.00 3.11
2438 2771 2.576191 CAAGATGGTCCCACTCCCTTTA 59.424 50.000 0.00 0.00 0.00 1.85
2439 2772 2.929301 AGATGGTCCCACTCCCTTTAA 58.071 47.619 0.00 0.00 0.00 1.52
2440 2773 3.265489 AGATGGTCCCACTCCCTTTAAA 58.735 45.455 0.00 0.00 0.00 1.52
2441 2774 3.660669 AGATGGTCCCACTCCCTTTAAAA 59.339 43.478 0.00 0.00 0.00 1.52
2442 2775 3.975479 TGGTCCCACTCCCTTTAAAAA 57.025 42.857 0.00 0.00 0.00 1.94
2460 2793 3.615709 AAAAAGGCAGCCCGGTGC 61.616 61.111 8.22 10.35 43.19 5.01
2461 2794 4.912395 AAAAGGCAGCCCGGTGCA 62.912 61.111 19.47 0.00 45.93 4.57
2462 2795 4.684134 AAAGGCAGCCCGGTGCAT 62.684 61.111 19.47 10.67 45.93 3.96
2465 2798 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2466 2799 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2467 2800 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2468 2801 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2469 2802 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2475 2808 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2476 2809 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2477 2810 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2478 2811 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2481 2814 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2497 2830 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2504 2837 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2505 2838 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2506 2839 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2507 2840 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2508 2841 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2509 2842 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2510 2843 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2511 2844 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2521 2854 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2522 2855 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2523 2856 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2524 2857 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2525 2858 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2526 2859 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2527 2860 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2528 2861 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2529 2862 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2530 2863 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2531 2864 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2532 2865 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2533 2866 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2534 2867 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2535 2868 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2536 2869 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2537 2870 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2538 2871 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2539 2872 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2540 2873 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2541 2874 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2542 2875 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2543 2876 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2544 2877 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2545 2878 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2546 2879 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2547 2880 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2559 2892 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2560 2893 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2561 2894 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2562 2895 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2563 2896 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2564 2897 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2565 2898 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2566 2899 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2567 2900 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2568 2901 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2569 2902 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2570 2903 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2571 2904 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2572 2905 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2573 2906 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2574 2907 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2575 2908 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2576 2909 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2577 2910 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2578 2911 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2579 2912 0.680061 GACTTGAACCCGTGACCTCT 59.320 55.000 0.00 0.00 0.00 3.69
2580 2913 1.070289 GACTTGAACCCGTGACCTCTT 59.930 52.381 0.00 0.00 0.00 2.85
2581 2914 1.202651 ACTTGAACCCGTGACCTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
2582 2915 0.107831 TTGAACCCGTGACCTCTTGG 59.892 55.000 0.00 0.00 39.83 3.61
2596 2929 4.162592 TTGGTCACAAGGCAGCAG 57.837 55.556 0.00 0.00 31.73 4.24
2597 2930 2.195567 TTGGTCACAAGGCAGCAGC 61.196 57.895 0.00 0.00 41.10 5.25
2598 2931 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2599 2932 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2600 2933 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2601 2934 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2602 2935 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2603 2936 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2604 2937 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2605 2938 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2606 2939 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2607 2940 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2611 2944 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2612 2945 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2613 2946 1.002134 AGCTTTACCACTGCGCCAT 60.002 52.632 4.18 0.00 0.00 4.40
2614 2947 1.137404 GCTTTACCACTGCGCCATG 59.863 57.895 4.18 2.35 0.00 3.66
2615 2948 1.802636 CTTTACCACTGCGCCATGG 59.197 57.895 21.97 21.97 42.13 3.66
2617 2950 0.958382 TTTACCACTGCGCCATGGTC 60.958 55.000 29.81 6.40 46.62 4.02
2618 2951 2.813226 TTACCACTGCGCCATGGTCC 62.813 60.000 29.81 5.19 46.62 4.46
2620 2953 4.720902 CACTGCGCCATGGTCCCA 62.721 66.667 14.67 7.24 0.00 4.37
2621 2954 4.722700 ACTGCGCCATGGTCCCAC 62.723 66.667 14.67 0.00 0.00 4.61
2622 2955 4.415150 CTGCGCCATGGTCCCACT 62.415 66.667 14.67 0.00 0.00 4.00
2623 2956 4.408821 TGCGCCATGGTCCCACTC 62.409 66.667 14.67 0.00 0.00 3.51
2625 2958 4.489771 CGCCATGGTCCCACTCCC 62.490 72.222 14.67 0.00 0.00 4.30
2626 2959 3.017581 GCCATGGTCCCACTCCCT 61.018 66.667 14.67 0.00 0.00 4.20
2627 2960 2.616458 GCCATGGTCCCACTCCCTT 61.616 63.158 14.67 0.00 0.00 3.95
2628 2961 2.087248 CCATGGTCCCACTCCCTTT 58.913 57.895 2.57 0.00 0.00 3.11
2629 2962 0.034089 CCATGGTCCCACTCCCTTTC 60.034 60.000 2.57 0.00 0.00 2.62
2630 2963 0.698238 CATGGTCCCACTCCCTTTCA 59.302 55.000 0.00 0.00 0.00 2.69
2631 2964 1.075374 CATGGTCCCACTCCCTTTCAA 59.925 52.381 0.00 0.00 0.00 2.69
2632 2965 0.771127 TGGTCCCACTCCCTTTCAAG 59.229 55.000 0.00 0.00 0.00 3.02
2633 2966 0.771755 GGTCCCACTCCCTTTCAAGT 59.228 55.000 0.00 0.00 0.00 3.16
2634 2967 1.982958 GGTCCCACTCCCTTTCAAGTA 59.017 52.381 0.00 0.00 0.00 2.24
2635 2968 2.374170 GGTCCCACTCCCTTTCAAGTAA 59.626 50.000 0.00 0.00 0.00 2.24
2636 2969 3.010250 GGTCCCACTCCCTTTCAAGTAAT 59.990 47.826 0.00 0.00 0.00 1.89
2637 2970 4.226620 GGTCCCACTCCCTTTCAAGTAATA 59.773 45.833 0.00 0.00 0.00 0.98
2638 2971 5.280830 GGTCCCACTCCCTTTCAAGTAATAA 60.281 44.000 0.00 0.00 0.00 1.40
2639 2972 6.243148 GTCCCACTCCCTTTCAAGTAATAAA 58.757 40.000 0.00 0.00 0.00 1.40
2640 2973 6.717997 GTCCCACTCCCTTTCAAGTAATAAAA 59.282 38.462 0.00 0.00 0.00 1.52
2641 2974 7.231925 GTCCCACTCCCTTTCAAGTAATAAAAA 59.768 37.037 0.00 0.00 0.00 1.94
2642 2975 7.231925 TCCCACTCCCTTTCAAGTAATAAAAAC 59.768 37.037 0.00 0.00 0.00 2.43
2643 2976 7.375834 CCACTCCCTTTCAAGTAATAAAAACC 58.624 38.462 0.00 0.00 0.00 3.27
2644 2977 7.014808 CCACTCCCTTTCAAGTAATAAAAACCA 59.985 37.037 0.00 0.00 0.00 3.67
2645 2978 8.585018 CACTCCCTTTCAAGTAATAAAAACCAT 58.415 33.333 0.00 0.00 0.00 3.55
2646 2979 9.154632 ACTCCCTTTCAAGTAATAAAAACCATT 57.845 29.630 0.00 0.00 0.00 3.16
2647 2980 9.996554 CTCCCTTTCAAGTAATAAAAACCATTT 57.003 29.630 0.00 0.00 0.00 2.32
2648 2981 9.990360 TCCCTTTCAAGTAATAAAAACCATTTC 57.010 29.630 0.00 0.00 0.00 2.17
2649 2982 9.996554 CCCTTTCAAGTAATAAAAACCATTTCT 57.003 29.630 0.00 0.00 0.00 2.52
2663 2996 5.824904 ACCATTTCTCATAAGTCACATGC 57.175 39.130 0.00 0.00 0.00 4.06
2664 2997 5.255687 ACCATTTCTCATAAGTCACATGCA 58.744 37.500 0.00 0.00 0.00 3.96
2665 2998 5.711506 ACCATTTCTCATAAGTCACATGCAA 59.288 36.000 0.00 0.00 0.00 4.08
2666 2999 6.127814 ACCATTTCTCATAAGTCACATGCAAG 60.128 38.462 0.00 0.00 0.00 4.01
2667 3000 6.094464 CCATTTCTCATAAGTCACATGCAAGA 59.906 38.462 0.00 0.00 0.00 3.02
2668 3001 6.486253 TTTCTCATAAGTCACATGCAAGAC 57.514 37.500 8.71 8.71 35.02 3.01
2669 3002 5.411831 TCTCATAAGTCACATGCAAGACT 57.588 39.130 12.42 12.42 46.45 3.24
2674 3007 3.758755 AGTCACATGCAAGACTTCAGA 57.241 42.857 12.42 0.00 42.12 3.27
2675 3008 4.283363 AGTCACATGCAAGACTTCAGAT 57.717 40.909 12.42 0.00 42.12 2.90
2676 3009 4.252073 AGTCACATGCAAGACTTCAGATC 58.748 43.478 12.42 0.00 42.12 2.75
2677 3010 4.020396 AGTCACATGCAAGACTTCAGATCT 60.020 41.667 12.42 0.00 42.12 2.75
2678 3011 4.329528 GTCACATGCAAGACTTCAGATCTC 59.670 45.833 0.00 0.00 0.00 2.75
2679 3012 3.622163 CACATGCAAGACTTCAGATCTCC 59.378 47.826 0.00 0.00 0.00 3.71
2680 3013 3.518705 ACATGCAAGACTTCAGATCTCCT 59.481 43.478 0.00 0.00 0.00 3.69
2681 3014 4.713814 ACATGCAAGACTTCAGATCTCCTA 59.286 41.667 0.00 0.00 0.00 2.94
2682 3015 5.188555 ACATGCAAGACTTCAGATCTCCTAA 59.811 40.000 0.00 0.00 0.00 2.69
2683 3016 5.946942 TGCAAGACTTCAGATCTCCTAAT 57.053 39.130 0.00 0.00 0.00 1.73
2684 3017 7.070447 ACATGCAAGACTTCAGATCTCCTAATA 59.930 37.037 0.00 0.00 0.00 0.98
2685 3018 7.423844 TGCAAGACTTCAGATCTCCTAATAA 57.576 36.000 0.00 0.00 0.00 1.40
2686 3019 7.851228 TGCAAGACTTCAGATCTCCTAATAAA 58.149 34.615 0.00 0.00 0.00 1.40
2687 3020 7.984050 TGCAAGACTTCAGATCTCCTAATAAAG 59.016 37.037 0.00 0.00 0.00 1.85
2688 3021 8.200792 GCAAGACTTCAGATCTCCTAATAAAGA 58.799 37.037 0.00 0.00 0.00 2.52
2689 3022 9.528018 CAAGACTTCAGATCTCCTAATAAAGAC 57.472 37.037 0.00 0.00 0.00 3.01
2690 3023 8.245195 AGACTTCAGATCTCCTAATAAAGACC 57.755 38.462 0.00 0.00 0.00 3.85
2691 3024 7.841729 AGACTTCAGATCTCCTAATAAAGACCA 59.158 37.037 0.00 0.00 0.00 4.02
2692 3025 8.380742 ACTTCAGATCTCCTAATAAAGACCAA 57.619 34.615 0.00 0.00 0.00 3.67
2693 3026 8.997734 ACTTCAGATCTCCTAATAAAGACCAAT 58.002 33.333 0.00 0.00 0.00 3.16
2694 3027 9.844257 CTTCAGATCTCCTAATAAAGACCAATT 57.156 33.333 0.00 0.00 0.00 2.32
2696 3029 9.618890 TCAGATCTCCTAATAAAGACCAATTTG 57.381 33.333 0.00 0.00 0.00 2.32
2697 3030 8.348507 CAGATCTCCTAATAAAGACCAATTTGC 58.651 37.037 0.00 0.00 0.00 3.68
2698 3031 6.677781 TCTCCTAATAAAGACCAATTTGCG 57.322 37.500 0.00 0.00 0.00 4.85
2699 3032 6.411376 TCTCCTAATAAAGACCAATTTGCGA 58.589 36.000 0.00 0.00 0.00 5.10
2700 3033 6.882140 TCTCCTAATAAAGACCAATTTGCGAA 59.118 34.615 0.00 0.00 0.00 4.70
2701 3034 7.392113 TCTCCTAATAAAGACCAATTTGCGAAA 59.608 33.333 0.00 0.00 0.00 3.46
2702 3035 7.887381 TCCTAATAAAGACCAATTTGCGAAAA 58.113 30.769 0.00 0.00 0.00 2.29
2703 3036 8.361139 TCCTAATAAAGACCAATTTGCGAAAAA 58.639 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.301637 TGGCATCCACGTGTGAGTG 60.302 57.895 15.65 8.40 41.53 3.51
20 21 1.301716 GTGGCATCCACGTGTGAGT 60.302 57.895 15.65 0.00 44.95 3.41
21 22 3.566261 GTGGCATCCACGTGTGAG 58.434 61.111 15.65 4.40 44.95 3.51
29 30 2.358615 GTGCTGACGTGGCATCCA 60.359 61.111 14.47 0.00 41.86 3.41
30 31 3.127533 GGTGCTGACGTGGCATCC 61.128 66.667 14.47 13.17 41.86 3.51
31 32 2.046892 AGGTGCTGACGTGGCATC 60.047 61.111 14.47 13.97 41.86 3.91
32 33 2.046892 GAGGTGCTGACGTGGCAT 60.047 61.111 14.47 1.75 41.86 4.40
33 34 4.314440 GGAGGTGCTGACGTGGCA 62.314 66.667 8.47 8.47 37.36 4.92
35 36 2.859273 GATGGGAGGTGCTGACGTGG 62.859 65.000 0.00 0.00 0.00 4.94
36 37 1.448540 GATGGGAGGTGCTGACGTG 60.449 63.158 0.00 0.00 0.00 4.49
37 38 1.608717 GAGATGGGAGGTGCTGACGT 61.609 60.000 0.00 0.00 0.00 4.34
38 39 1.142748 GAGATGGGAGGTGCTGACG 59.857 63.158 0.00 0.00 0.00 4.35
39 40 0.177604 CAGAGATGGGAGGTGCTGAC 59.822 60.000 0.00 0.00 0.00 3.51
40 41 0.041684 TCAGAGATGGGAGGTGCTGA 59.958 55.000 0.00 0.00 0.00 4.26
41 42 0.464870 CTCAGAGATGGGAGGTGCTG 59.535 60.000 0.00 0.00 0.00 4.41
42 43 0.337773 TCTCAGAGATGGGAGGTGCT 59.662 55.000 0.00 0.00 0.00 4.40
43 44 1.198713 TTCTCAGAGATGGGAGGTGC 58.801 55.000 0.00 0.00 0.00 5.01
44 45 2.035704 CGATTCTCAGAGATGGGAGGTG 59.964 54.545 0.00 0.00 0.00 4.00
45 46 2.315176 CGATTCTCAGAGATGGGAGGT 58.685 52.381 0.00 0.00 0.00 3.85
46 47 2.315176 ACGATTCTCAGAGATGGGAGG 58.685 52.381 0.00 0.00 0.00 4.30
47 48 4.399004 AAACGATTCTCAGAGATGGGAG 57.601 45.455 0.00 0.00 0.00 4.30
48 49 4.507710 CAAAACGATTCTCAGAGATGGGA 58.492 43.478 0.00 0.00 0.00 4.37
49 50 3.624861 CCAAAACGATTCTCAGAGATGGG 59.375 47.826 0.00 0.00 0.00 4.00
50 51 4.331168 GTCCAAAACGATTCTCAGAGATGG 59.669 45.833 0.00 4.33 0.00 3.51
51 52 5.462034 GTCCAAAACGATTCTCAGAGATG 57.538 43.478 0.00 0.00 0.00 2.90
79 80 5.277490 CCATAATCTTGGTGCAAGTGATACG 60.277 44.000 0.00 0.00 41.66 3.06
84 85 4.012374 AGTCCATAATCTTGGTGCAAGTG 58.988 43.478 0.00 0.00 41.66 3.16
85 86 4.307032 AGTCCATAATCTTGGTGCAAGT 57.693 40.909 0.00 0.00 41.66 3.16
89 90 5.053145 CAGTCTAGTCCATAATCTTGGTGC 58.947 45.833 0.00 0.00 38.01 5.01
90 91 5.053145 GCAGTCTAGTCCATAATCTTGGTG 58.947 45.833 0.00 0.00 38.01 4.17
95 96 9.553064 CTAAAATTGCAGTCTAGTCCATAATCT 57.447 33.333 0.00 0.00 0.00 2.40
108 109 6.150140 AGTCCATTCACTCTAAAATTGCAGTC 59.850 38.462 0.00 0.00 0.00 3.51
113 114 8.019669 CACTTCAGTCCATTCACTCTAAAATTG 58.980 37.037 0.00 0.00 0.00 2.32
118 121 4.569943 GCACTTCAGTCCATTCACTCTAA 58.430 43.478 0.00 0.00 0.00 2.10
120 123 2.611473 CGCACTTCAGTCCATTCACTCT 60.611 50.000 0.00 0.00 0.00 3.24
140 143 5.006746 GGTCCATGAACTAGTTTAAGATGCG 59.993 44.000 10.02 5.27 0.00 4.73
150 153 3.873801 GCCACATTGGTCCATGAACTAGT 60.874 47.826 0.00 0.00 40.46 2.57
163 166 2.159254 CGGGAGTAAAATGCCACATTGG 60.159 50.000 0.00 0.00 41.55 3.16
167 170 0.693622 TCCGGGAGTAAAATGCCACA 59.306 50.000 0.00 0.00 0.00 4.17
169 172 1.281419 TCTCCGGGAGTAAAATGCCA 58.719 50.000 22.88 0.00 0.00 4.92
180 183 1.382695 GAGTGGGGAATCTCCGGGA 60.383 63.158 0.00 0.00 37.43 5.14
181 184 2.797278 CGAGTGGGGAATCTCCGGG 61.797 68.421 0.00 0.00 37.43 5.73
183 186 2.815308 CCGAGTGGGGAATCTCCG 59.185 66.667 0.00 0.00 37.43 4.63
185 188 2.317149 CTGGCCGAGTGGGGAATCTC 62.317 65.000 0.00 0.00 35.78 2.75
186 189 2.285368 TGGCCGAGTGGGGAATCT 60.285 61.111 0.00 0.00 35.78 2.40
228 240 2.863153 CGGAGAGGCGCAAAGTTG 59.137 61.111 10.83 0.00 0.00 3.16
229 241 3.050275 GCGGAGAGGCGCAAAGTT 61.050 61.111 10.83 0.00 0.00 2.66
246 258 4.389576 GACAGCGTTTGCAGCCGG 62.390 66.667 0.00 0.00 46.23 6.13
247 259 4.724697 CGACAGCGTTTGCAGCCG 62.725 66.667 3.01 3.01 46.23 5.52
447 490 3.743396 GGGACTTATCAATTCGCTGCTAG 59.257 47.826 0.00 0.00 0.00 3.42
472 519 3.882888 TGTAGAGAGCAAACAAAAGGTGG 59.117 43.478 0.00 0.00 0.00 4.61
530 582 4.443725 CAGATTGCAGATGCTAACTAGTCG 59.556 45.833 6.35 0.00 42.66 4.18
535 587 3.539604 GGACAGATTGCAGATGCTAACT 58.460 45.455 6.35 0.00 42.66 2.24
665 740 7.494952 GCTGAATGCTGATATAATATGCTCTGA 59.505 37.037 0.00 0.00 38.95 3.27
668 815 6.541278 TGGCTGAATGCTGATATAATATGCTC 59.459 38.462 0.00 0.00 42.39 4.26
680 827 3.963374 AGATACTAGTGGCTGAATGCTGA 59.037 43.478 5.39 0.00 42.39 4.26
681 828 4.056740 CAGATACTAGTGGCTGAATGCTG 58.943 47.826 17.24 4.46 42.39 4.41
682 829 3.494048 GCAGATACTAGTGGCTGAATGCT 60.494 47.826 23.20 1.07 42.39 3.79
683 830 2.805099 GCAGATACTAGTGGCTGAATGC 59.195 50.000 23.20 12.61 41.94 3.56
684 831 4.333913 AGCAGATACTAGTGGCTGAATG 57.666 45.455 23.20 7.87 32.76 2.67
729 876 6.584563 GCAGGCAAACGAACTATTTAATTTGA 59.415 34.615 0.00 0.00 30.35 2.69
738 885 2.472695 TCTGCAGGCAAACGAACTAT 57.527 45.000 15.13 0.00 0.00 2.12
745 892 5.629079 ACTAGTTAATTCTGCAGGCAAAC 57.371 39.130 15.13 12.95 0.00 2.93
772 919 2.638556 AAGTCGTCGTCTTGATCCAG 57.361 50.000 3.90 0.00 0.00 3.86
803 982 2.928396 CGTCTTCACCCCCACCCT 60.928 66.667 0.00 0.00 0.00 4.34
843 1063 0.963962 CCTGCACAAGTTGGATGCTT 59.036 50.000 16.66 0.00 40.13 3.91
859 1079 0.035881 TGCAAGCTCTCCACTTCCTG 59.964 55.000 0.00 0.00 0.00 3.86
860 1080 0.036022 GTGCAAGCTCTCCACTTCCT 59.964 55.000 0.00 0.00 0.00 3.36
861 1081 0.957888 GGTGCAAGCTCTCCACTTCC 60.958 60.000 10.09 0.00 0.00 3.46
862 1082 0.957888 GGGTGCAAGCTCTCCACTTC 60.958 60.000 10.09 2.30 0.00 3.01
863 1083 1.073897 GGGTGCAAGCTCTCCACTT 59.926 57.895 10.09 0.00 0.00 3.16
864 1084 2.121992 CTGGGTGCAAGCTCTCCACT 62.122 60.000 10.09 0.00 0.00 4.00
865 1085 1.673665 CTGGGTGCAAGCTCTCCAC 60.674 63.158 0.00 0.00 0.00 4.02
866 1086 2.149383 ACTGGGTGCAAGCTCTCCA 61.149 57.895 0.00 0.00 0.00 3.86
896 1125 3.008485 GGAGGTTCCTCAACAAGATCACT 59.992 47.826 18.83 0.00 34.96 3.41
900 1129 4.430441 ACTAGGAGGTTCCTCAACAAGAT 58.570 43.478 18.83 0.93 45.66 2.40
941 1170 2.575279 AGATCTTCCACTGCCACTGAAT 59.425 45.455 0.00 0.00 0.00 2.57
964 1235 0.376502 GCTGAATCTTCCTTGCTCGC 59.623 55.000 0.00 0.00 0.00 5.03
982 1253 1.922135 ATCACCGCCACAATCGTTGC 61.922 55.000 0.00 0.00 0.00 4.17
995 1266 3.411114 ATGCTGGAGGCCATCACCG 62.411 63.158 5.01 1.18 40.92 4.94
1020 1291 1.566298 GGAGGGGTTCTGCAGTGGAT 61.566 60.000 14.67 0.00 33.66 3.41
1029 1300 2.661176 TGATTACCAGGAGGGGTTCT 57.339 50.000 0.00 0.00 42.42 3.01
1032 1303 2.509964 GTTCATGATTACCAGGAGGGGT 59.490 50.000 0.00 0.00 45.10 4.95
1035 1306 2.158608 GGGGTTCATGATTACCAGGAGG 60.159 54.545 16.62 0.00 36.87 4.30
1107 1379 1.134401 TGATCGATTCCCCTGTTGAGC 60.134 52.381 0.00 0.00 0.00 4.26
1215 1487 1.374252 ATCGGAAACTCGCTGCGTT 60.374 52.632 22.48 9.13 0.00 4.84
1267 1539 1.448540 CATCCAGGAGTGACGGCAC 60.449 63.158 15.39 15.39 45.49 5.01
1270 1542 4.034246 TCCATCCAGGAGTGACGG 57.966 61.111 0.00 0.00 43.07 4.79
1287 1562 2.529744 GCCCCCTTCAGTGGTGACT 61.530 63.158 0.00 0.00 30.10 3.41
1367 1644 2.496871 TGTTTTGCCTTGCTATGGATGG 59.503 45.455 0.00 0.00 0.00 3.51
1525 1802 5.335976 CCTTAAGCTTGTTCTCCATTTCCAC 60.336 44.000 9.86 0.00 0.00 4.02
1617 1894 2.354704 CGGAATACTGGCCAACTCTGAA 60.355 50.000 7.01 0.00 0.00 3.02
1668 1945 4.033009 TGATGTCCTCTTCCAGCAAGATA 58.967 43.478 0.00 0.00 40.55 1.98
1723 2000 1.047034 GGCCCGGAGTAGGAAAGCTA 61.047 60.000 0.73 0.00 0.00 3.32
1791 2068 7.472334 AAAGATTTAGTGGAAAGATGCATGT 57.528 32.000 2.46 0.00 0.00 3.21
1871 2149 8.743636 ATAAGTAGGAGGTATAAGAGGCAAAT 57.256 34.615 0.00 0.00 0.00 2.32
1927 2205 7.932491 TGATGCTTCTGATGAATTTTCCAAAAA 59.068 29.630 0.88 0.00 0.00 1.94
1931 2209 6.593268 TTGATGCTTCTGATGAATTTTCCA 57.407 33.333 0.88 0.00 0.00 3.53
1932 2210 6.869913 TGTTTGATGCTTCTGATGAATTTTCC 59.130 34.615 0.88 0.00 0.00 3.13
1944 2222 4.038282 TGTTGCTCAATGTTTGATGCTTCT 59.962 37.500 0.88 0.00 39.30 2.85
2003 2288 1.466950 CGCATACACACCGGAACAAAT 59.533 47.619 9.46 0.00 0.00 2.32
2012 2297 6.838198 TTATATCAAACTCGCATACACACC 57.162 37.500 0.00 0.00 0.00 4.16
2053 2342 4.789012 ATGTAAACACCCAGCTTGAATG 57.211 40.909 0.00 0.00 0.00 2.67
2181 2473 9.230122 TGCATTAGAATTACTTGATTGTCTCAA 57.770 29.630 0.00 0.00 41.61 3.02
2216 2509 4.467082 AGCCCATGTCATGCTTCATAAAAA 59.533 37.500 7.35 0.00 29.17 1.94
2220 2513 2.487805 GGAGCCCATGTCATGCTTCATA 60.488 50.000 7.35 0.00 34.99 2.15
2226 2519 2.012902 GCTTGGAGCCCATGTCATGC 62.013 60.000 7.35 0.00 34.48 4.06
2247 2540 2.560542 AGAGCGGCATATCCTTACTCTG 59.439 50.000 1.45 0.00 36.52 3.35
2265 2598 4.201950 ACAAACTAGCAAAGCACACAAGAG 60.202 41.667 0.00 0.00 0.00 2.85
2272 2605 8.073768 TGTAATTCTTACAAACTAGCAAAGCAC 58.926 33.333 0.00 0.00 42.75 4.40
2311 2644 9.809096 TGCATTGTTCAGTAATAAAAACAAAGA 57.191 25.926 3.92 0.00 42.80 2.52
2371 2704 1.982073 GCATCACTGCGGCTTGGTAC 61.982 60.000 0.00 0.00 38.92 3.34
2391 2724 3.322318 GACAGCCCAGCAGAGGACC 62.322 68.421 0.00 0.00 0.00 4.46
2392 2725 2.267324 GACAGCCCAGCAGAGGAC 59.733 66.667 0.00 0.00 0.00 3.85
2393 2726 2.121385 AGACAGCCCAGCAGAGGA 59.879 61.111 0.00 0.00 0.00 3.71
2405 2738 3.196463 GACCATCTTGCAGATCAGACAG 58.804 50.000 0.00 0.00 31.32 3.51
2406 2739 2.093288 GGACCATCTTGCAGATCAGACA 60.093 50.000 0.00 0.00 31.32 3.41
2408 2741 1.487976 GGGACCATCTTGCAGATCAGA 59.512 52.381 0.00 0.00 31.32 3.27
2412 2745 1.211457 GAGTGGGACCATCTTGCAGAT 59.789 52.381 0.00 0.00 34.74 2.90
2443 2776 3.615709 GCACCGGGCTGCCTTTTT 61.616 61.111 19.68 0.00 40.25 1.94
2444 2777 4.912395 TGCACCGGGCTGCCTTTT 62.912 61.111 19.68 0.00 45.15 2.27
2445 2778 4.684134 ATGCACCGGGCTGCCTTT 62.684 61.111 19.68 0.00 45.15 3.11
2448 2781 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2449 2782 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2450 2783 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2451 2784 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2452 2785 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2453 2786 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2480 2813 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2487 2820 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2488 2821 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2489 2822 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2490 2823 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2491 2824 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2492 2825 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2493 2826 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2494 2827 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2495 2828 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2500 2833 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2501 2834 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2502 2835 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2503 2836 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2504 2837 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2505 2838 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2506 2839 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2507 2840 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2508 2841 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2509 2842 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2510 2843 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2511 2844 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2512 2845 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2513 2846 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2514 2847 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2515 2848 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2516 2849 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2517 2850 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2518 2851 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2519 2852 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2520 2853 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2521 2854 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2522 2855 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2523 2856 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2524 2857 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2525 2858 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2526 2859 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2527 2860 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2528 2861 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2529 2862 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2530 2863 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2531 2864 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2532 2865 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2533 2866 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2534 2867 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2535 2868 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2536 2869 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2537 2870 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2551 2884 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2552 2885 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2553 2886 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2554 2887 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2555 2888 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2556 2889 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2557 2890 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2558 2891 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2559 2892 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2560 2893 0.680061 AGAGGTCACGGGTTCAAGTC 59.320 55.000 0.00 0.00 0.00 3.01
2561 2894 1.129058 AAGAGGTCACGGGTTCAAGT 58.871 50.000 0.00 0.00 0.00 3.16
2562 2895 1.512926 CAAGAGGTCACGGGTTCAAG 58.487 55.000 0.00 0.00 0.00 3.02
2563 2896 0.107831 CCAAGAGGTCACGGGTTCAA 59.892 55.000 0.00 0.00 0.00 2.69
2564 2897 1.752198 CCAAGAGGTCACGGGTTCA 59.248 57.895 0.00 0.00 0.00 3.18
2565 2898 4.695560 CCAAGAGGTCACGGGTTC 57.304 61.111 0.00 0.00 0.00 3.62
2578 2911 1.954528 CTGCTGCCTTGTGACCAAG 59.045 57.895 0.00 0.00 46.33 3.61
2579 2912 2.195567 GCTGCTGCCTTGTGACCAA 61.196 57.895 3.85 0.00 0.00 3.67
2580 2913 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2581 2914 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2582 2915 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2583 2916 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2584 2917 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2585 2918 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2586 2919 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2587 2920 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2588 2921 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2589 2922 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2594 2927 1.308069 ATGGCGCAGTGGTAAAGCTG 61.308 55.000 10.83 0.00 35.93 4.24
2595 2928 1.002134 ATGGCGCAGTGGTAAAGCT 60.002 52.632 10.83 0.00 0.00 3.74
2596 2929 1.137404 CATGGCGCAGTGGTAAAGC 59.863 57.895 10.83 0.00 0.00 3.51
2597 2930 0.960364 ACCATGGCGCAGTGGTAAAG 60.960 55.000 27.98 8.15 46.49 1.85
2598 2931 1.074072 ACCATGGCGCAGTGGTAAA 59.926 52.632 27.98 0.00 46.49 2.01
2599 2932 2.753701 ACCATGGCGCAGTGGTAA 59.246 55.556 27.98 0.00 46.49 2.85
2603 2936 4.720902 TGGGACCATGGCGCAGTG 62.721 66.667 13.04 7.05 0.00 3.66
2604 2937 4.722700 GTGGGACCATGGCGCAGT 62.723 66.667 20.71 0.00 0.00 4.40
2605 2938 4.415150 AGTGGGACCATGGCGCAG 62.415 66.667 20.71 0.00 0.00 5.18
2606 2939 4.408821 GAGTGGGACCATGGCGCA 62.409 66.667 13.04 16.02 0.00 6.09
2608 2941 4.489771 GGGAGTGGGACCATGGCG 62.490 72.222 13.04 0.00 0.00 5.69
2609 2942 2.155197 AAAGGGAGTGGGACCATGGC 62.155 60.000 13.04 4.47 0.00 4.40
2610 2943 0.034089 GAAAGGGAGTGGGACCATGG 60.034 60.000 11.19 11.19 0.00 3.66
2611 2944 0.698238 TGAAAGGGAGTGGGACCATG 59.302 55.000 0.00 0.00 0.00 3.66
2612 2945 1.355720 CTTGAAAGGGAGTGGGACCAT 59.644 52.381 0.00 0.00 0.00 3.55
2613 2946 0.771127 CTTGAAAGGGAGTGGGACCA 59.229 55.000 0.00 0.00 0.00 4.02
2614 2947 0.771755 ACTTGAAAGGGAGTGGGACC 59.228 55.000 0.00 0.00 0.00 4.46
2615 2948 3.782656 TTACTTGAAAGGGAGTGGGAC 57.217 47.619 0.00 0.00 0.00 4.46
2616 2949 6.457159 TTTATTACTTGAAAGGGAGTGGGA 57.543 37.500 0.00 0.00 0.00 4.37
2617 2950 7.375834 GTTTTTATTACTTGAAAGGGAGTGGG 58.624 38.462 0.00 0.00 0.00 4.61
2618 2951 7.014808 TGGTTTTTATTACTTGAAAGGGAGTGG 59.985 37.037 0.00 0.00 0.00 4.00
2619 2952 7.947282 TGGTTTTTATTACTTGAAAGGGAGTG 58.053 34.615 0.00 0.00 0.00 3.51
2620 2953 8.721133 ATGGTTTTTATTACTTGAAAGGGAGT 57.279 30.769 0.00 0.00 0.00 3.85
2621 2954 9.996554 AAATGGTTTTTATTACTTGAAAGGGAG 57.003 29.630 0.00 0.00 0.00 4.30
2622 2955 9.990360 GAAATGGTTTTTATTACTTGAAAGGGA 57.010 29.630 0.00 0.00 0.00 4.20
2623 2956 9.996554 AGAAATGGTTTTTATTACTTGAAAGGG 57.003 29.630 0.00 0.00 0.00 3.95
2637 2970 7.599998 GCATGTGACTTATGAGAAATGGTTTTT 59.400 33.333 0.00 0.00 0.00 1.94
2638 2971 7.092716 GCATGTGACTTATGAGAAATGGTTTT 58.907 34.615 0.00 0.00 0.00 2.43
2639 2972 6.209192 TGCATGTGACTTATGAGAAATGGTTT 59.791 34.615 0.00 0.00 0.00 3.27
2640 2973 5.711506 TGCATGTGACTTATGAGAAATGGTT 59.288 36.000 0.00 0.00 0.00 3.67
2641 2974 5.255687 TGCATGTGACTTATGAGAAATGGT 58.744 37.500 0.00 0.00 0.00 3.55
2642 2975 5.823209 TGCATGTGACTTATGAGAAATGG 57.177 39.130 0.00 0.00 0.00 3.16
2643 2976 6.965500 GTCTTGCATGTGACTTATGAGAAATG 59.035 38.462 0.00 0.00 0.00 2.32
2644 2977 6.883217 AGTCTTGCATGTGACTTATGAGAAAT 59.117 34.615 10.49 0.00 40.21 2.17
2645 2978 6.233434 AGTCTTGCATGTGACTTATGAGAAA 58.767 36.000 10.49 0.00 40.21 2.52
2646 2979 5.798132 AGTCTTGCATGTGACTTATGAGAA 58.202 37.500 10.49 0.00 40.21 2.87
2647 2980 5.411831 AGTCTTGCATGTGACTTATGAGA 57.588 39.130 10.49 0.00 40.21 3.27
2654 2987 3.758755 TCTGAAGTCTTGCATGTGACT 57.241 42.857 10.49 10.49 44.40 3.41
2655 2988 4.252073 AGATCTGAAGTCTTGCATGTGAC 58.748 43.478 0.00 6.84 0.00 3.67
2656 2989 4.502016 GAGATCTGAAGTCTTGCATGTGA 58.498 43.478 0.00 0.00 0.00 3.58
2657 2990 3.622163 GGAGATCTGAAGTCTTGCATGTG 59.378 47.826 0.00 0.00 0.00 3.21
2658 2991 3.518705 AGGAGATCTGAAGTCTTGCATGT 59.481 43.478 0.00 0.00 0.00 3.21
2659 2992 4.139859 AGGAGATCTGAAGTCTTGCATG 57.860 45.455 0.00 0.00 0.00 4.06
2660 2993 5.946942 TTAGGAGATCTGAAGTCTTGCAT 57.053 39.130 0.00 0.00 0.00 3.96
2661 2994 5.946942 ATTAGGAGATCTGAAGTCTTGCA 57.053 39.130 0.00 0.00 0.00 4.08
2662 2995 8.200792 TCTTTATTAGGAGATCTGAAGTCTTGC 58.799 37.037 0.00 0.00 0.00 4.01
2663 2996 9.528018 GTCTTTATTAGGAGATCTGAAGTCTTG 57.472 37.037 0.00 0.00 0.00 3.02
2664 2997 8.700973 GGTCTTTATTAGGAGATCTGAAGTCTT 58.299 37.037 0.00 0.00 0.00 3.01
2665 2998 7.841729 TGGTCTTTATTAGGAGATCTGAAGTCT 59.158 37.037 0.00 0.00 0.00 3.24
2666 2999 8.012957 TGGTCTTTATTAGGAGATCTGAAGTC 57.987 38.462 0.00 0.00 0.00 3.01
2667 3000 7.979786 TGGTCTTTATTAGGAGATCTGAAGT 57.020 36.000 0.00 0.00 0.00 3.01
2668 3001 9.844257 AATTGGTCTTTATTAGGAGATCTGAAG 57.156 33.333 0.00 0.00 0.00 3.02
2670 3003 9.618890 CAAATTGGTCTTTATTAGGAGATCTGA 57.381 33.333 0.00 0.00 0.00 3.27
2671 3004 8.348507 GCAAATTGGTCTTTATTAGGAGATCTG 58.651 37.037 0.00 0.00 0.00 2.90
2672 3005 7.227512 CGCAAATTGGTCTTTATTAGGAGATCT 59.772 37.037 0.00 0.00 0.00 2.75
2673 3006 7.226720 TCGCAAATTGGTCTTTATTAGGAGATC 59.773 37.037 0.00 0.00 0.00 2.75
2674 3007 7.054124 TCGCAAATTGGTCTTTATTAGGAGAT 58.946 34.615 0.00 0.00 0.00 2.75
2675 3008 6.411376 TCGCAAATTGGTCTTTATTAGGAGA 58.589 36.000 0.00 0.00 0.00 3.71
2676 3009 6.677781 TCGCAAATTGGTCTTTATTAGGAG 57.322 37.500 0.00 0.00 0.00 3.69
2677 3010 7.455641 TTTCGCAAATTGGTCTTTATTAGGA 57.544 32.000 0.00 0.00 0.00 2.94
2678 3011 8.527567 TTTTTCGCAAATTGGTCTTTATTAGG 57.472 30.769 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.