Multiple sequence alignment - TraesCS7A01G061500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G061500 chr7A 100.000 2409 0 0 1 2409 30640751 30638343 0.000000e+00 4449.0
1 TraesCS7A01G061500 chr7A 87.025 316 21 4 1 296 469439531 469439216 2.970000e-89 339.0
2 TraesCS7A01G061500 chr7A 82.022 267 19 5 1 266 710500465 710500227 1.460000e-47 200.0
3 TraesCS7A01G061500 chr7A 79.167 312 16 14 1 263 110247992 110248303 1.150000e-38 171.0
4 TraesCS7A01G061500 chr7D 90.057 1589 122 23 419 1993 30241851 30240285 0.000000e+00 2026.0
5 TraesCS7A01G061500 chr7D 88.750 160 5 4 49 195 631345407 631345566 1.470000e-42 183.0
6 TraesCS7A01G061500 chr7D 92.233 103 8 0 2307 2409 30186855 30186753 1.930000e-31 147.0
7 TraesCS7A01G061500 chr7D 91.304 69 5 1 296 363 30241923 30241855 2.550000e-15 93.5
8 TraesCS7A01G061500 chr4A 84.360 1266 129 37 389 1627 698174707 698175930 0.000000e+00 1177.0
9 TraesCS7A01G061500 chr4A 85.714 1092 74 42 554 1627 699003992 699005019 0.000000e+00 1077.0
10 TraesCS7A01G061500 chr4A 84.631 488 52 16 1240 1714 699007342 699007819 4.690000e-127 464.0
11 TraesCS7A01G061500 chr4A 85.312 320 25 14 1655 1964 699005015 699005322 6.470000e-81 311.0
12 TraesCS7A01G061500 chr4A 90.455 220 15 3 1655 1868 698175926 698176145 3.920000e-73 285.0
13 TraesCS7A01G061500 chr5A 96.618 207 7 0 1 207 20529989 20530195 6.380000e-91 344.0
14 TraesCS7A01G061500 chr5A 96.172 209 6 1 1 207 523131234 523131026 8.250000e-90 340.0
15 TraesCS7A01G061500 chr3D 88.095 294 24 4 1 293 571116694 571116977 2.970000e-89 339.0
16 TraesCS7A01G061500 chr3D 95.673 208 8 1 1 207 570050101 570049894 1.380000e-87 333.0
17 TraesCS7A01G061500 chr3D 80.392 357 11 16 1 298 406524262 406524618 1.450000e-52 217.0
18 TraesCS7A01G061500 chr3D 85.263 95 3 4 207 301 567145686 567145769 1.190000e-13 87.9
19 TraesCS7A01G061500 chr3D 83.019 106 5 5 207 300 579218700 579218804 1.530000e-12 84.2
20 TraesCS7A01G061500 chr3A 96.135 207 7 1 1 206 57232284 57232078 1.070000e-88 337.0
21 TraesCS7A01G061500 chr3A 95.694 209 7 2 1 207 122990733 122990941 3.840000e-88 335.0
22 TraesCS7A01G061500 chr3A 89.071 183 6 4 27 195 84735432 84735614 5.220000e-52 215.0
23 TraesCS7A01G061500 chr3A 84.615 104 4 1 206 297 57232055 57231952 2.550000e-15 93.5
24 TraesCS7A01G061500 chr1A 95.714 210 6 2 1 207 436867063 436867272 3.840000e-88 335.0
25 TraesCS7A01G061500 chr1A 95.652 207 9 0 1 207 529854896 529854690 1.380000e-87 333.0
26 TraesCS7A01G061500 chr1A 81.090 312 30 16 1 296 41909096 41909394 3.120000e-54 222.0
27 TraesCS7A01G061500 chr1D 93.970 199 7 4 1 195 78056870 78057067 1.810000e-76 296.0
28 TraesCS7A01G061500 chr1D 84.013 319 22 13 1 301 389596135 389595828 1.820000e-71 279.0
29 TraesCS7A01G061500 chr1D 90.000 90 4 2 207 296 7411100 7411184 7.040000e-21 111.0
30 TraesCS7A01G061500 chr6A 86.063 287 16 8 1 263 184974121 184974407 1.090000e-73 287.0
31 TraesCS7A01G061500 chr6A 92.574 202 8 2 1 195 462844269 462844470 1.410000e-72 283.0
32 TraesCS7A01G061500 chr2A 89.189 222 9 1 1 207 626265996 626266217 1.840000e-66 263.0
33 TraesCS7A01G061500 chr2D 89.706 204 11 3 1 195 16395893 16395691 3.980000e-63 252.0
34 TraesCS7A01G061500 chr2D 97.436 39 0 1 264 302 649674198 649674235 5.560000e-07 65.8
35 TraesCS7A01G061500 chr4D 94.681 94 5 0 113 206 195773307 195773214 1.930000e-31 147.0
36 TraesCS7A01G061500 chr6D 97.436 39 1 0 263 301 442060165 442060203 1.550000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G061500 chr7A 30638343 30640751 2408 True 4449.000000 4449 100.0000 1 2409 1 chr7A.!!$R1 2408
1 TraesCS7A01G061500 chr7D 30240285 30241923 1638 True 1059.750000 2026 90.6805 296 1993 2 chr7D.!!$R2 1697
2 TraesCS7A01G061500 chr4A 698174707 698176145 1438 False 731.000000 1177 87.4075 389 1868 2 chr4A.!!$F1 1479
3 TraesCS7A01G061500 chr4A 699003992 699007819 3827 False 617.333333 1077 85.2190 554 1964 3 chr4A.!!$F2 1410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 386 0.036306 GGCTTTTCCAACTCTCGGGA 59.964 55.0 0.0 0.0 34.01 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1454 0.028242 CCGACGAATGAGACTCTCCG 59.972 60.0 3.68 7.03 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.840090 TTGGAATAATGAGGGGTGATTAGA 57.160 37.500 0.00 0.00 0.00 2.10
26 27 6.439636 TGGAATAATGAGGGGTGATTAGAG 57.560 41.667 0.00 0.00 0.00 2.43
27 28 6.150332 TGGAATAATGAGGGGTGATTAGAGA 58.850 40.000 0.00 0.00 0.00 3.10
28 29 6.794493 TGGAATAATGAGGGGTGATTAGAGAT 59.206 38.462 0.00 0.00 0.00 2.75
29 30 7.295672 TGGAATAATGAGGGGTGATTAGAGATT 59.704 37.037 0.00 0.00 0.00 2.40
30 31 8.826765 GGAATAATGAGGGGTGATTAGAGATTA 58.173 37.037 0.00 0.00 0.00 1.75
34 35 6.500589 TGAGGGGTGATTAGAGATTAAAGG 57.499 41.667 0.00 0.00 0.00 3.11
35 36 5.970640 TGAGGGGTGATTAGAGATTAAAGGT 59.029 40.000 0.00 0.00 0.00 3.50
36 37 6.447084 TGAGGGGTGATTAGAGATTAAAGGTT 59.553 38.462 0.00 0.00 0.00 3.50
37 38 7.626084 TGAGGGGTGATTAGAGATTAAAGGTTA 59.374 37.037 0.00 0.00 0.00 2.85
38 39 8.401955 AGGGGTGATTAGAGATTAAAGGTTAA 57.598 34.615 0.00 0.00 0.00 2.01
39 40 8.842764 AGGGGTGATTAGAGATTAAAGGTTAAA 58.157 33.333 0.00 0.00 0.00 1.52
40 41 9.642343 GGGGTGATTAGAGATTAAAGGTTAAAT 57.358 33.333 0.00 0.00 0.00 1.40
48 49 8.870075 AGAGATTAAAGGTTAAATTGAGCAGT 57.130 30.769 0.00 0.00 0.00 4.40
49 50 8.734386 AGAGATTAAAGGTTAAATTGAGCAGTG 58.266 33.333 0.00 0.00 0.00 3.66
50 51 8.635765 AGATTAAAGGTTAAATTGAGCAGTGA 57.364 30.769 0.00 0.00 0.00 3.41
51 52 9.247861 AGATTAAAGGTTAAATTGAGCAGTGAT 57.752 29.630 0.00 0.00 0.00 3.06
52 53 9.294030 GATTAAAGGTTAAATTGAGCAGTGATG 57.706 33.333 0.00 0.00 0.00 3.07
53 54 6.899393 AAAGGTTAAATTGAGCAGTGATGA 57.101 33.333 0.00 0.00 0.00 2.92
54 55 6.506500 AAGGTTAAATTGAGCAGTGATGAG 57.493 37.500 0.00 0.00 0.00 2.90
55 56 4.946157 AGGTTAAATTGAGCAGTGATGAGG 59.054 41.667 0.00 0.00 0.00 3.86
56 57 4.096984 GGTTAAATTGAGCAGTGATGAGGG 59.903 45.833 0.00 0.00 0.00 4.30
57 58 2.431954 AATTGAGCAGTGATGAGGGG 57.568 50.000 0.00 0.00 0.00 4.79
58 59 1.293062 ATTGAGCAGTGATGAGGGGT 58.707 50.000 0.00 0.00 0.00 4.95
59 60 0.325933 TTGAGCAGTGATGAGGGGTG 59.674 55.000 0.00 0.00 0.00 4.61
60 61 0.545071 TGAGCAGTGATGAGGGGTGA 60.545 55.000 0.00 0.00 0.00 4.02
61 62 0.835941 GAGCAGTGATGAGGGGTGAT 59.164 55.000 0.00 0.00 0.00 3.06
62 63 1.211457 GAGCAGTGATGAGGGGTGATT 59.789 52.381 0.00 0.00 0.00 2.57
63 64 2.435805 GAGCAGTGATGAGGGGTGATTA 59.564 50.000 0.00 0.00 0.00 1.75
64 65 2.437281 AGCAGTGATGAGGGGTGATTAG 59.563 50.000 0.00 0.00 0.00 1.73
65 66 2.435805 GCAGTGATGAGGGGTGATTAGA 59.564 50.000 0.00 0.00 0.00 2.10
66 67 3.494048 GCAGTGATGAGGGGTGATTAGAG 60.494 52.174 0.00 0.00 0.00 2.43
67 68 3.963374 CAGTGATGAGGGGTGATTAGAGA 59.037 47.826 0.00 0.00 0.00 3.10
68 69 4.592351 CAGTGATGAGGGGTGATTAGAGAT 59.408 45.833 0.00 0.00 0.00 2.75
69 70 5.071519 CAGTGATGAGGGGTGATTAGAGATT 59.928 44.000 0.00 0.00 0.00 2.40
70 71 6.268617 CAGTGATGAGGGGTGATTAGAGATTA 59.731 42.308 0.00 0.00 0.00 1.75
71 72 6.496565 AGTGATGAGGGGTGATTAGAGATTAG 59.503 42.308 0.00 0.00 0.00 1.73
72 73 6.495181 GTGATGAGGGGTGATTAGAGATTAGA 59.505 42.308 0.00 0.00 0.00 2.10
73 74 6.723515 TGATGAGGGGTGATTAGAGATTAGAG 59.276 42.308 0.00 0.00 0.00 2.43
74 75 5.398236 TGAGGGGTGATTAGAGATTAGAGG 58.602 45.833 0.00 0.00 0.00 3.69
75 76 5.103043 TGAGGGGTGATTAGAGATTAGAGGT 60.103 44.000 0.00 0.00 0.00 3.85
76 77 5.399113 AGGGGTGATTAGAGATTAGAGGTC 58.601 45.833 0.00 0.00 0.00 3.85
77 78 5.103043 AGGGGTGATTAGAGATTAGAGGTCA 60.103 44.000 0.00 0.00 0.00 4.02
78 79 5.602978 GGGGTGATTAGAGATTAGAGGTCAA 59.397 44.000 0.00 0.00 0.00 3.18
79 80 6.099845 GGGGTGATTAGAGATTAGAGGTCAAA 59.900 42.308 0.00 0.00 0.00 2.69
80 81 7.365652 GGGGTGATTAGAGATTAGAGGTCAAAA 60.366 40.741 0.00 0.00 0.00 2.44
81 82 8.214364 GGGTGATTAGAGATTAGAGGTCAAAAT 58.786 37.037 0.00 0.00 0.00 1.82
144 145 9.470399 AATCATAAAATTTCCTTTAGTACCGGT 57.530 29.630 13.98 13.98 0.00 5.28
145 146 8.866970 TCATAAAATTTCCTTTAGTACCGGTT 57.133 30.769 15.04 0.00 0.00 4.44
146 147 8.732531 TCATAAAATTTCCTTTAGTACCGGTTG 58.267 33.333 15.04 0.00 0.00 3.77
147 148 5.970317 AAATTTCCTTTAGTACCGGTTGG 57.030 39.130 15.04 6.26 42.84 3.77
168 169 5.638596 GGTGTTACCAATTGGGACTAAAG 57.361 43.478 27.89 0.94 38.42 1.85
169 170 5.318630 GGTGTTACCAATTGGGACTAAAGA 58.681 41.667 27.89 9.83 38.42 2.52
170 171 5.949952 GGTGTTACCAATTGGGACTAAAGAT 59.050 40.000 27.89 6.56 38.42 2.40
171 172 6.127730 GGTGTTACCAATTGGGACTAAAGATG 60.128 42.308 27.89 0.00 38.42 2.90
172 173 5.949354 TGTTACCAATTGGGACTAAAGATGG 59.051 40.000 27.89 0.00 41.15 3.51
173 174 4.946160 ACCAATTGGGACTAAAGATGGA 57.054 40.909 27.89 0.00 41.15 3.41
174 175 4.600062 ACCAATTGGGACTAAAGATGGAC 58.400 43.478 27.89 0.00 41.15 4.02
175 176 3.954258 CCAATTGGGACTAAAGATGGACC 59.046 47.826 17.36 0.00 40.01 4.46
176 177 4.325344 CCAATTGGGACTAAAGATGGACCT 60.325 45.833 17.36 0.00 40.01 3.85
177 178 4.779993 ATTGGGACTAAAGATGGACCTC 57.220 45.455 0.00 0.00 0.00 3.85
178 179 2.478292 TGGGACTAAAGATGGACCTCC 58.522 52.381 0.00 0.00 0.00 4.30
204 205 2.597510 GCCACGTGAAGGGCCTTT 60.598 61.111 21.92 0.00 44.53 3.11
205 206 1.302993 GCCACGTGAAGGGCCTTTA 60.303 57.895 21.92 14.37 44.53 1.85
206 207 1.305930 GCCACGTGAAGGGCCTTTAG 61.306 60.000 21.92 16.46 44.53 1.85
207 208 0.323629 CCACGTGAAGGGCCTTTAGA 59.676 55.000 21.92 4.80 0.00 2.10
208 209 1.439679 CACGTGAAGGGCCTTTAGAC 58.560 55.000 21.92 15.82 0.00 2.59
209 210 1.002087 CACGTGAAGGGCCTTTAGACT 59.998 52.381 21.92 0.00 0.00 3.24
210 211 2.232941 CACGTGAAGGGCCTTTAGACTA 59.767 50.000 21.92 0.35 0.00 2.59
211 212 2.901839 ACGTGAAGGGCCTTTAGACTAA 59.098 45.455 21.92 0.00 0.00 2.24
212 213 3.325716 ACGTGAAGGGCCTTTAGACTAAA 59.674 43.478 21.92 7.42 0.00 1.85
213 214 3.933332 CGTGAAGGGCCTTTAGACTAAAG 59.067 47.826 21.92 22.92 43.64 1.85
221 222 3.562343 CTTTAGACTAAAGGGGGAGGC 57.438 52.381 22.36 0.00 41.05 4.70
222 223 2.963654 TTAGACTAAAGGGGGAGGCT 57.036 50.000 0.00 0.00 34.58 4.58
223 224 2.963654 TAGACTAAAGGGGGAGGCTT 57.036 50.000 0.00 0.00 31.79 4.35
224 225 2.061264 AGACTAAAGGGGGAGGCTTT 57.939 50.000 0.00 0.00 0.00 3.51
225 226 3.216230 AGACTAAAGGGGGAGGCTTTA 57.784 47.619 0.00 0.00 0.00 1.85
226 227 3.116174 AGACTAAAGGGGGAGGCTTTAG 58.884 50.000 1.97 1.97 42.84 1.85
227 228 2.930653 ACTAAAGGGGGAGGCTTTAGT 58.069 47.619 2.77 2.77 44.28 2.24
228 229 4.084466 ACTAAAGGGGGAGGCTTTAGTA 57.916 45.455 5.23 0.00 46.00 1.82
229 230 3.779183 ACTAAAGGGGGAGGCTTTAGTAC 59.221 47.826 5.23 0.00 46.00 2.73
230 231 1.592948 AAGGGGGAGGCTTTAGTACC 58.407 55.000 0.00 0.00 0.00 3.34
231 232 0.690077 AGGGGGAGGCTTTAGTACCG 60.690 60.000 0.00 0.00 0.00 4.02
232 233 0.688749 GGGGGAGGCTTTAGTACCGA 60.689 60.000 0.00 0.00 0.00 4.69
233 234 0.463204 GGGGAGGCTTTAGTACCGAC 59.537 60.000 0.00 0.00 0.00 4.79
234 235 0.463204 GGGAGGCTTTAGTACCGACC 59.537 60.000 0.00 0.00 0.00 4.79
235 236 0.463204 GGAGGCTTTAGTACCGACCC 59.537 60.000 0.00 0.00 0.00 4.46
236 237 1.482954 GAGGCTTTAGTACCGACCCT 58.517 55.000 0.00 0.00 0.00 4.34
237 238 1.829849 GAGGCTTTAGTACCGACCCTT 59.170 52.381 0.00 0.00 0.00 3.95
238 239 2.235650 GAGGCTTTAGTACCGACCCTTT 59.764 50.000 0.00 0.00 0.00 3.11
239 240 3.444029 AGGCTTTAGTACCGACCCTTTA 58.556 45.455 0.00 0.00 0.00 1.85
240 241 3.840078 AGGCTTTAGTACCGACCCTTTAA 59.160 43.478 0.00 0.00 0.00 1.52
241 242 4.472470 AGGCTTTAGTACCGACCCTTTAAT 59.528 41.667 0.00 0.00 0.00 1.40
242 243 4.813161 GGCTTTAGTACCGACCCTTTAATC 59.187 45.833 0.00 0.00 0.00 1.75
243 244 4.813161 GCTTTAGTACCGACCCTTTAATCC 59.187 45.833 0.00 0.00 0.00 3.01
244 245 5.357742 TTTAGTACCGACCCTTTAATCCC 57.642 43.478 0.00 0.00 0.00 3.85
245 246 1.758862 AGTACCGACCCTTTAATCCCG 59.241 52.381 0.00 0.00 0.00 5.14
246 247 1.122227 TACCGACCCTTTAATCCCGG 58.878 55.000 0.00 0.00 42.30 5.73
247 248 0.911045 ACCGACCCTTTAATCCCGGT 60.911 55.000 0.00 0.00 44.37 5.28
248 249 0.253894 CCGACCCTTTAATCCCGGTT 59.746 55.000 0.00 0.00 33.02 4.44
249 250 1.340308 CCGACCCTTTAATCCCGGTTT 60.340 52.381 0.00 0.00 33.02 3.27
250 251 2.011947 CGACCCTTTAATCCCGGTTTC 58.988 52.381 0.00 0.00 0.00 2.78
251 252 2.616001 CGACCCTTTAATCCCGGTTTCA 60.616 50.000 0.00 0.00 0.00 2.69
252 253 3.014623 GACCCTTTAATCCCGGTTTCAG 58.985 50.000 0.00 0.00 0.00 3.02
253 254 2.645797 ACCCTTTAATCCCGGTTTCAGA 59.354 45.455 0.00 0.00 0.00 3.27
254 255 3.074836 ACCCTTTAATCCCGGTTTCAGAA 59.925 43.478 0.00 0.00 0.00 3.02
255 256 3.442625 CCCTTTAATCCCGGTTTCAGAAC 59.557 47.826 0.00 0.00 34.96 3.01
256 257 4.076394 CCTTTAATCCCGGTTTCAGAACA 58.924 43.478 0.00 0.00 37.51 3.18
257 258 4.156008 CCTTTAATCCCGGTTTCAGAACAG 59.844 45.833 0.00 0.00 37.51 3.16
258 259 2.200373 AATCCCGGTTTCAGAACAGG 57.800 50.000 0.00 2.10 46.71 4.00
261 262 2.928416 CCGGTTTCAGAACAGGGAC 58.072 57.895 0.00 0.00 44.40 4.46
262 263 0.396811 CCGGTTTCAGAACAGGGACT 59.603 55.000 0.00 0.00 44.40 3.85
273 274 2.531852 AGGGACTGAACCGGGACT 59.468 61.111 6.32 0.00 37.18 3.85
274 275 1.778981 AGGGACTGAACCGGGACTA 59.221 57.895 6.32 0.00 37.18 2.59
275 276 0.115745 AGGGACTGAACCGGGACTAA 59.884 55.000 6.32 0.00 37.18 2.24
276 277 0.978907 GGGACTGAACCGGGACTAAA 59.021 55.000 6.32 0.00 0.00 1.85
277 278 1.066358 GGGACTGAACCGGGACTAAAG 60.066 57.143 6.32 0.00 0.00 1.85
278 279 1.066358 GGACTGAACCGGGACTAAAGG 60.066 57.143 6.32 0.00 0.00 3.11
279 280 0.323957 ACTGAACCGGGACTAAAGGC 59.676 55.000 6.32 0.00 0.00 4.35
280 281 0.392595 CTGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
281 282 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
282 283 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
283 284 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
284 285 1.138228 ACCGGGACTAAAGGCCCTTT 61.138 55.000 18.97 14.26 42.40 3.11
285 286 0.039180 CCGGGACTAAAGGCCCTTTT 59.961 55.000 18.97 0.00 42.40 2.27
286 287 1.549265 CCGGGACTAAAGGCCCTTTTT 60.549 52.381 18.97 1.56 42.40 1.94
287 288 1.816835 CGGGACTAAAGGCCCTTTTTC 59.183 52.381 18.97 11.07 42.40 2.29
288 289 2.554564 CGGGACTAAAGGCCCTTTTTCT 60.555 50.000 18.97 0.00 42.40 2.52
289 290 3.307904 CGGGACTAAAGGCCCTTTTTCTA 60.308 47.826 18.97 0.00 42.40 2.10
290 291 4.015084 GGGACTAAAGGCCCTTTTTCTAC 58.985 47.826 15.13 5.73 41.31 2.59
291 292 4.263816 GGGACTAAAGGCCCTTTTTCTACT 60.264 45.833 15.13 0.00 41.31 2.57
292 293 5.045359 GGGACTAAAGGCCCTTTTTCTACTA 60.045 44.000 15.13 0.00 41.31 1.82
293 294 6.114089 GGACTAAAGGCCCTTTTTCTACTAG 58.886 44.000 15.13 6.21 35.21 2.57
294 295 6.296317 GGACTAAAGGCCCTTTTTCTACTAGT 60.296 42.308 15.13 9.58 35.21 2.57
306 307 8.507249 CCTTTTTCTACTAGTGGAGAACAATTG 58.493 37.037 11.15 3.24 31.47 2.32
308 309 6.928348 TTCTACTAGTGGAGAACAATTGGA 57.072 37.500 10.83 0.00 0.00 3.53
320 321 4.837860 AGAACAATTGGATGGCTTTGGTTA 59.162 37.500 10.83 0.00 0.00 2.85
322 323 5.559148 ACAATTGGATGGCTTTGGTTAAA 57.441 34.783 10.83 0.00 0.00 1.52
352 354 4.434725 CGACATCTTCTTCCATGTTGTTCG 60.435 45.833 0.00 0.00 33.22 3.95
363 365 3.053291 TTGTTCGCGGGCATGGTC 61.053 61.111 6.13 0.00 0.00 4.02
371 373 2.679996 GGGCATGGTCCGGCTTTT 60.680 61.111 0.00 0.00 0.00 2.27
372 374 2.710902 GGGCATGGTCCGGCTTTTC 61.711 63.158 0.00 0.00 0.00 2.29
373 375 2.710902 GGCATGGTCCGGCTTTTCC 61.711 63.158 0.00 0.00 0.00 3.13
374 376 1.976474 GCATGGTCCGGCTTTTCCA 60.976 57.895 0.00 0.22 34.01 3.53
375 377 1.531739 GCATGGTCCGGCTTTTCCAA 61.532 55.000 0.00 0.00 33.55 3.53
376 378 0.243636 CATGGTCCGGCTTTTCCAAC 59.756 55.000 0.00 0.00 33.55 3.77
377 379 0.112412 ATGGTCCGGCTTTTCCAACT 59.888 50.000 0.00 0.00 33.55 3.16
378 380 0.536460 TGGTCCGGCTTTTCCAACTC 60.536 55.000 0.00 0.00 34.01 3.01
379 381 0.250770 GGTCCGGCTTTTCCAACTCT 60.251 55.000 0.00 0.00 34.01 3.24
380 382 1.157585 GTCCGGCTTTTCCAACTCTC 58.842 55.000 0.00 0.00 34.01 3.20
381 383 0.320421 TCCGGCTTTTCCAACTCTCG 60.320 55.000 0.00 0.00 34.01 4.04
382 384 1.298859 CCGGCTTTTCCAACTCTCGG 61.299 60.000 0.00 0.00 34.01 4.63
383 385 1.298859 CGGCTTTTCCAACTCTCGGG 61.299 60.000 0.00 0.00 34.01 5.14
384 386 0.036306 GGCTTTTCCAACTCTCGGGA 59.964 55.000 0.00 0.00 34.01 5.14
385 387 1.157585 GCTTTTCCAACTCTCGGGAC 58.842 55.000 0.00 0.00 31.59 4.46
386 388 1.809684 CTTTTCCAACTCTCGGGACC 58.190 55.000 0.00 0.00 31.59 4.46
387 389 1.071699 CTTTTCCAACTCTCGGGACCA 59.928 52.381 0.00 0.00 31.59 4.02
391 393 0.613260 CCAACTCTCGGGACCAATGA 59.387 55.000 0.00 0.00 0.00 2.57
397 399 2.366590 CTCTCGGGACCAATGATGATGA 59.633 50.000 0.00 0.00 0.00 2.92
407 409 3.807622 CCAATGATGATGAATTGCAAGCC 59.192 43.478 4.94 0.00 33.34 4.35
414 416 6.546772 TGATGATGAATTGCAAGCCATACTAA 59.453 34.615 14.06 4.36 0.00 2.24
416 418 7.350744 TGATGAATTGCAAGCCATACTAAAT 57.649 32.000 14.06 0.00 0.00 1.40
417 419 8.462589 TGATGAATTGCAAGCCATACTAAATA 57.537 30.769 14.06 0.00 0.00 1.40
420 422 7.059788 TGAATTGCAAGCCATACTAAATAGGA 58.940 34.615 4.94 0.00 0.00 2.94
429 431 7.108847 AGCCATACTAAATAGGATGATGCTTC 58.891 38.462 13.21 0.00 45.57 3.86
430 432 6.036517 GCCATACTAAATAGGATGATGCTTCG 59.963 42.308 13.21 0.00 45.57 3.79
459 461 4.693566 TGTTTGTTCGGCGATTTCTAGATT 59.306 37.500 11.76 0.00 0.00 2.40
460 462 5.163893 TGTTTGTTCGGCGATTTCTAGATTC 60.164 40.000 11.76 0.00 0.00 2.52
472 474 2.268298 TCTAGATTCCGTTTCAAGCGC 58.732 47.619 0.00 0.00 0.00 5.92
477 479 2.981977 TTCCGTTTCAAGCGCCGAGT 62.982 55.000 2.29 0.00 0.00 4.18
478 480 2.170985 CGTTTCAAGCGCCGAGTG 59.829 61.111 2.29 0.00 0.00 3.51
479 481 2.556287 GTTTCAAGCGCCGAGTGG 59.444 61.111 2.29 0.00 38.77 4.00
490 492 3.159298 CCGAGTGGCTATTGCAGTT 57.841 52.632 0.66 0.00 41.91 3.16
500 502 5.633601 GTGGCTATTGCAGTTTTTAAAGTCC 59.366 40.000 0.66 0.00 41.91 3.85
508 510 4.971830 GCAGTTTTTAAAGTCCGGTACAAC 59.028 41.667 0.00 0.00 0.00 3.32
509 511 5.513376 CAGTTTTTAAAGTCCGGTACAACC 58.487 41.667 0.00 0.00 34.05 3.77
512 514 4.420522 TTTAAAGTCCGGTACAACCAGT 57.579 40.909 0.00 0.00 38.47 4.00
514 516 1.416243 AAGTCCGGTACAACCAGTGA 58.584 50.000 0.00 0.00 38.47 3.41
515 517 0.966920 AGTCCGGTACAACCAGTGAG 59.033 55.000 0.00 0.00 38.47 3.51
516 518 0.669625 GTCCGGTACAACCAGTGAGC 60.670 60.000 0.00 0.00 38.47 4.26
527 529 1.768870 ACCAGTGAGCTTGTAGGTGTT 59.231 47.619 0.00 0.00 0.00 3.32
533 535 5.009010 CAGTGAGCTTGTAGGTGTTCATTTT 59.991 40.000 0.00 0.00 0.00 1.82
539 541 8.409358 AGCTTGTAGGTGTTCATTTTCTTTAT 57.591 30.769 0.00 0.00 0.00 1.40
567 569 7.837202 TGGTTAGGTGTAATGTTTAATCTCG 57.163 36.000 0.00 0.00 0.00 4.04
571 573 3.001939 GGTGTAATGTTTAATCTCGGGCG 59.998 47.826 0.00 0.00 0.00 6.13
575 577 1.450669 GTTTAATCTCGGGCGGGCA 60.451 57.895 3.27 0.00 0.00 5.36
584 586 2.925262 CGGGCGGGCAACAATCAAA 61.925 57.895 3.27 0.00 39.74 2.69
585 587 1.369321 GGGCGGGCAACAATCAAAA 59.631 52.632 3.27 0.00 39.74 2.44
586 588 0.036483 GGGCGGGCAACAATCAAAAT 60.036 50.000 3.27 0.00 39.74 1.82
588 590 1.337635 GGCGGGCAACAATCAAAATCA 60.338 47.619 0.00 0.00 39.74 2.57
589 591 1.994779 GCGGGCAACAATCAAAATCAG 59.005 47.619 0.00 0.00 39.74 2.90
598 600 7.439056 GGCAACAATCAAAATCAGAAGAAGAAA 59.561 33.333 0.00 0.00 0.00 2.52
675 678 6.203338 TCCGGTTGTCTTTTTATTGTACTGAC 59.797 38.462 0.00 0.00 0.00 3.51
676 679 6.204108 CCGGTTGTCTTTTTATTGTACTGACT 59.796 38.462 0.00 0.00 0.00 3.41
757 763 2.358322 TTTTTGGGCGACTTCCTCTT 57.642 45.000 0.00 0.00 0.00 2.85
865 881 2.138656 CTCACCGTCTTCCGTCCGTT 62.139 60.000 0.00 0.00 33.66 4.44
866 882 1.731969 CACCGTCTTCCGTCCGTTC 60.732 63.158 0.00 0.00 33.66 3.95
867 883 2.126189 CCGTCTTCCGTCCGTTCC 60.126 66.667 0.00 0.00 33.66 3.62
868 884 2.503375 CGTCTTCCGTCCGTTCCG 60.503 66.667 0.00 0.00 0.00 4.30
869 885 2.647297 GTCTTCCGTCCGTTCCGT 59.353 61.111 0.00 0.00 0.00 4.69
873 889 2.151049 CTTCCGTCCGTTCCGTTCCT 62.151 60.000 0.00 0.00 0.00 3.36
885 901 3.611766 TCCGTTCCTTGAGATTCCTTC 57.388 47.619 0.00 0.00 0.00 3.46
1146 1166 1.282248 ACATCAAGACGGTGCGTTCG 61.282 55.000 0.00 0.00 41.37 3.95
1174 1194 3.522731 CCGCCGTCTCTCCCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
1407 1428 2.295349 GTGCTTCGTCGGGGATATCTTA 59.705 50.000 2.05 0.00 0.00 2.10
1416 1437 4.464597 GTCGGGGATATCTTAATCTGCTCT 59.535 45.833 2.05 0.00 0.00 4.09
1433 1454 0.620556 TCTTGTCCAGCTCCAATCCC 59.379 55.000 0.00 0.00 0.00 3.85
1435 1456 2.190578 GTCCAGCTCCAATCCCGG 59.809 66.667 0.00 0.00 0.00 5.73
1455 1482 1.586564 GAGTCTCATTCGTCGGCGG 60.587 63.158 10.62 0.00 38.89 6.13
1581 1616 5.872617 TGTACATAGACCATGCACAGTAAAC 59.127 40.000 0.00 0.00 36.23 2.01
1590 1625 4.321452 CCATGCACAGTAAACTGCAGAATT 60.321 41.667 23.35 16.86 46.26 2.17
1610 1645 4.789012 TTTTGCCAATCTCCTTGATGTC 57.211 40.909 0.00 0.00 36.97 3.06
1615 1650 3.814283 GCCAATCTCCTTGATGTCATCTC 59.186 47.826 13.90 0.00 36.97 2.75
1759 1807 3.940209 TTCAAATCAGCCAATGTGGTC 57.060 42.857 0.00 0.00 40.46 4.02
1763 1811 3.443045 CAGCCAATGTGGTCGCCC 61.443 66.667 0.00 0.00 40.46 6.13
1784 1837 7.227910 TCGCCCCTGTATTTTTCTAATAATCAC 59.772 37.037 0.00 0.00 0.00 3.06
1804 1857 1.064208 CTAGGTCCGTCGTGTCTGATG 59.936 57.143 0.00 0.00 0.00 3.07
1811 1864 2.736721 CCGTCGTGTCTGATGAATGTTT 59.263 45.455 0.00 0.00 0.00 2.83
1840 1893 2.438868 TCGCATCCGACTTGATATGG 57.561 50.000 0.00 0.00 38.82 2.74
1844 1897 0.321671 ATCCGACTTGATATGGCCCG 59.678 55.000 0.00 0.00 0.00 6.13
1859 1912 2.267642 CCGCGTCTGATTCCCCAA 59.732 61.111 4.92 0.00 0.00 4.12
1929 1982 2.796483 TTCACTGCCGGTGGGATTCG 62.796 60.000 1.90 0.00 45.38 3.34
1994 2047 4.154347 CTCAGGCCACCGGAGCTC 62.154 72.222 9.46 4.71 38.80 4.09
2000 2053 4.087892 CCACCGGAGCTCCACCTG 62.088 72.222 31.67 21.10 35.14 4.00
2006 2059 4.154347 GAGCTCCACCTGCTCGGG 62.154 72.222 0.87 0.00 45.73 5.14
2026 2079 3.353836 CACGGCGGGTCACCTTTG 61.354 66.667 13.24 0.00 33.28 2.77
2027 2080 4.636435 ACGGCGGGTCACCTTTGG 62.636 66.667 13.24 0.00 33.28 3.28
2028 2081 4.636435 CGGCGGGTCACCTTTGGT 62.636 66.667 0.00 0.00 35.62 3.67
2038 2091 1.598130 ACCTTTGGTGTGCTCTCGC 60.598 57.895 0.00 0.00 32.98 5.03
2039 2092 2.328099 CCTTTGGTGTGCTCTCGCC 61.328 63.158 0.00 0.00 38.35 5.54
2040 2093 2.664851 TTTGGTGTGCTCTCGCCG 60.665 61.111 0.00 0.00 40.48 6.46
2041 2094 4.680237 TTGGTGTGCTCTCGCCGG 62.680 66.667 0.00 0.00 40.48 6.13
2057 2110 2.237751 CGGCCCGCTTTGATCGTAG 61.238 63.158 0.00 0.00 0.00 3.51
2058 2111 1.887707 GGCCCGCTTTGATCGTAGG 60.888 63.158 0.00 0.00 0.00 3.18
2059 2112 2.534903 GCCCGCTTTGATCGTAGGC 61.535 63.158 0.00 0.00 0.00 3.93
2060 2113 1.153449 CCCGCTTTGATCGTAGGCA 60.153 57.895 3.32 0.00 0.00 4.75
2061 2114 0.532862 CCCGCTTTGATCGTAGGCAT 60.533 55.000 3.32 0.00 0.00 4.40
2064 2117 1.539065 CGCTTTGATCGTAGGCATCCT 60.539 52.381 3.32 0.00 37.71 3.24
2065 2118 2.288213 CGCTTTGATCGTAGGCATCCTA 60.288 50.000 3.32 0.00 34.61 2.94
2066 2119 3.615110 CGCTTTGATCGTAGGCATCCTAT 60.615 47.826 0.00 0.00 38.48 2.57
2067 2120 4.380550 CGCTTTGATCGTAGGCATCCTATA 60.381 45.833 0.00 0.00 38.48 1.31
2068 2121 5.665459 GCTTTGATCGTAGGCATCCTATAT 58.335 41.667 0.00 0.00 38.48 0.86
2069 2122 6.459710 CGCTTTGATCGTAGGCATCCTATATA 60.460 42.308 0.00 0.00 38.48 0.86
2070 2123 6.920758 GCTTTGATCGTAGGCATCCTATATAG 59.079 42.308 2.46 2.46 38.48 1.31
2071 2124 6.961360 TTGATCGTAGGCATCCTATATAGG 57.039 41.667 21.21 21.21 45.02 2.57
2086 2139 7.349412 CCTATATAGGAGCATACTTGTACCC 57.651 44.000 22.53 0.00 46.63 3.69
2089 2142 5.968676 ATAGGAGCATACTTGTACCCAAA 57.031 39.130 0.00 0.00 0.00 3.28
2090 2143 4.862641 AGGAGCATACTTGTACCCAAAT 57.137 40.909 0.00 0.00 0.00 2.32
2091 2144 4.526970 AGGAGCATACTTGTACCCAAATG 58.473 43.478 0.00 0.00 0.00 2.32
2092 2145 4.227300 AGGAGCATACTTGTACCCAAATGA 59.773 41.667 0.00 0.00 0.00 2.57
2093 2146 5.103940 AGGAGCATACTTGTACCCAAATGAT 60.104 40.000 0.00 0.00 0.00 2.45
2094 2147 6.101150 AGGAGCATACTTGTACCCAAATGATA 59.899 38.462 0.00 0.00 0.00 2.15
2095 2148 6.770785 GGAGCATACTTGTACCCAAATGATAA 59.229 38.462 0.00 0.00 0.00 1.75
2096 2149 7.041098 GGAGCATACTTGTACCCAAATGATAAG 60.041 40.741 0.00 0.00 0.00 1.73
2097 2150 6.772716 AGCATACTTGTACCCAAATGATAAGG 59.227 38.462 0.00 0.00 0.00 2.69
2098 2151 6.515035 GCATACTTGTACCCAAATGATAAGGC 60.515 42.308 0.00 0.00 0.00 4.35
2100 2153 4.264172 ACTTGTACCCAAATGATAAGGCCA 60.264 41.667 5.01 0.00 0.00 5.36
2101 2154 4.323569 TGTACCCAAATGATAAGGCCAA 57.676 40.909 5.01 0.00 0.00 4.52
2102 2155 4.020543 TGTACCCAAATGATAAGGCCAAC 58.979 43.478 5.01 0.00 0.00 3.77
2103 2156 3.473113 ACCCAAATGATAAGGCCAACT 57.527 42.857 5.01 0.00 0.00 3.16
2104 2157 3.365472 ACCCAAATGATAAGGCCAACTC 58.635 45.455 5.01 0.00 0.00 3.01
2105 2158 2.695147 CCCAAATGATAAGGCCAACTCC 59.305 50.000 5.01 0.00 0.00 3.85
2107 2160 3.768757 CCAAATGATAAGGCCAACTCCAA 59.231 43.478 5.01 0.00 0.00 3.53
2109 2162 2.107950 TGATAAGGCCAACTCCAACG 57.892 50.000 5.01 0.00 0.00 4.10
2110 2163 0.733150 GATAAGGCCAACTCCAACGC 59.267 55.000 5.01 0.00 0.00 4.84
2111 2164 1.024579 ATAAGGCCAACTCCAACGCG 61.025 55.000 5.01 3.53 0.00 6.01
2126 2179 4.736631 GCGCGGCTCCAAACGAAC 62.737 66.667 8.83 0.00 0.00 3.95
2129 2182 2.251642 GCGGCTCCAAACGAACACT 61.252 57.895 0.00 0.00 0.00 3.55
2130 2183 1.860078 CGGCTCCAAACGAACACTC 59.140 57.895 0.00 0.00 0.00 3.51
2145 2198 5.403897 GAACACTCGATTTGTCTGTTTCA 57.596 39.130 0.59 0.00 0.00 2.69
2146 2199 5.409643 AACACTCGATTTGTCTGTTTCAG 57.590 39.130 0.59 0.00 0.00 3.02
2154 2207 4.771127 TCTGTTTCAGACACGGCC 57.229 55.556 0.00 0.00 35.39 6.13
2155 2208 1.300620 TCTGTTTCAGACACGGCCG 60.301 57.895 26.86 26.86 35.39 6.13
2156 2209 1.594293 CTGTTTCAGACACGGCCGT 60.594 57.895 28.70 28.70 33.82 5.68
2157 2210 0.319211 CTGTTTCAGACACGGCCGTA 60.319 55.000 33.70 13.03 33.82 4.02
2158 2211 0.319083 TGTTTCAGACACGGCCGTAT 59.681 50.000 33.70 23.51 32.00 3.06
2159 2212 0.719465 GTTTCAGACACGGCCGTATG 59.281 55.000 33.70 27.76 0.00 2.39
2161 2214 1.884075 TTCAGACACGGCCGTATGCT 61.884 55.000 33.70 24.25 40.92 3.79
2163 2216 1.447838 AGACACGGCCGTATGCTTG 60.448 57.895 33.70 20.32 40.92 4.01
2164 2217 3.095898 GACACGGCCGTATGCTTGC 62.096 63.158 33.70 2.72 40.92 4.01
2165 2218 4.222589 CACGGCCGTATGCTTGCG 62.223 66.667 33.70 12.55 40.92 4.85
2171 2224 2.695055 CGTATGCTTGCGGTCGTG 59.305 61.111 2.05 0.00 0.00 4.35
2172 2225 2.092291 CGTATGCTTGCGGTCGTGT 61.092 57.895 2.05 0.00 0.00 4.49
2173 2226 1.419922 GTATGCTTGCGGTCGTGTG 59.580 57.895 0.00 0.00 0.00 3.82
2174 2227 1.011968 GTATGCTTGCGGTCGTGTGA 61.012 55.000 0.00 0.00 0.00 3.58
2183 2236 3.856508 GTCGTGTGACCATCGGTG 58.143 61.111 0.00 0.00 39.30 4.94
2185 2238 3.478394 CGTGTGACCATCGGTGCG 61.478 66.667 0.00 0.00 35.25 5.34
2187 2240 2.048597 TGTGACCATCGGTGCGTC 60.049 61.111 9.55 9.55 35.25 5.19
2190 2243 2.047655 GACCATCGGTGCGTCCAA 60.048 61.111 6.13 0.00 35.25 3.53
2193 2246 2.390599 CCATCGGTGCGTCCAACAG 61.391 63.158 0.00 0.00 35.57 3.16
2194 2247 1.374125 CATCGGTGCGTCCAACAGA 60.374 57.895 0.00 0.00 35.57 3.41
2195 2248 1.374252 ATCGGTGCGTCCAACAGAC 60.374 57.895 0.00 0.00 42.54 3.51
2198 2251 1.868997 GGTGCGTCCAACAGACATG 59.131 57.895 0.00 0.00 46.69 3.21
2199 2252 1.207593 GTGCGTCCAACAGACATGC 59.792 57.895 0.00 0.00 46.69 4.06
2200 2253 1.965930 TGCGTCCAACAGACATGCC 60.966 57.895 0.00 0.00 46.69 4.40
2202 2255 1.639298 GCGTCCAACAGACATGCCTC 61.639 60.000 0.00 0.00 46.69 4.70
2205 2258 0.037326 TCCAACAGACATGCCTCGTC 60.037 55.000 0.00 0.00 0.00 4.20
2207 2260 1.021390 CAACAGACATGCCTCGTCCC 61.021 60.000 0.00 0.00 33.70 4.46
2208 2261 1.480212 AACAGACATGCCTCGTCCCA 61.480 55.000 0.00 0.00 33.70 4.37
2209 2262 1.296392 CAGACATGCCTCGTCCCAA 59.704 57.895 0.00 0.00 33.70 4.12
2210 2263 0.107508 CAGACATGCCTCGTCCCAAT 60.108 55.000 0.00 0.00 33.70 3.16
2211 2264 0.179000 AGACATGCCTCGTCCCAATC 59.821 55.000 0.00 0.00 33.70 2.67
2212 2265 0.815615 GACATGCCTCGTCCCAATCC 60.816 60.000 0.00 0.00 0.00 3.01
2213 2266 1.889105 CATGCCTCGTCCCAATCCG 60.889 63.158 0.00 0.00 0.00 4.18
2214 2267 2.367202 ATGCCTCGTCCCAATCCGT 61.367 57.895 0.00 0.00 0.00 4.69
2215 2268 2.202892 GCCTCGTCCCAATCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
2216 2269 2.499685 CCTCGTCCCAATCCGTCC 59.500 66.667 0.00 0.00 0.00 4.79
2217 2270 2.104331 CTCGTCCCAATCCGTCCG 59.896 66.667 0.00 0.00 0.00 4.79
2218 2271 3.426117 CTCGTCCCAATCCGTCCGG 62.426 68.421 0.00 0.00 0.00 5.14
2219 2272 3.766691 CGTCCCAATCCGTCCGGT 61.767 66.667 0.00 0.00 36.47 5.28
2220 2273 2.125269 GTCCCAATCCGTCCGGTG 60.125 66.667 0.00 0.00 36.47 4.94
2222 2275 2.218454 TCCCAATCCGTCCGGTGTT 61.218 57.895 0.00 0.00 36.47 3.32
2224 2277 1.302192 CCAATCCGTCCGGTGTTGT 60.302 57.895 18.10 0.00 36.47 3.32
2225 2278 1.573829 CCAATCCGTCCGGTGTTGTG 61.574 60.000 18.10 10.51 36.47 3.33
2226 2279 1.302192 AATCCGTCCGGTGTTGTGG 60.302 57.895 0.00 0.00 36.47 4.17
2237 3021 3.181480 CCGGTGTTGTGGACTTCAATTTT 60.181 43.478 0.00 0.00 0.00 1.82
2284 3867 9.915629 ATAAACTTGCAAATAATACGAAAACCA 57.084 25.926 0.00 0.00 0.00 3.67
2287 3870 9.567848 AACTTGCAAATAATACGAAAACCATAG 57.432 29.630 0.00 0.00 0.00 2.23
2290 3873 9.991388 TTGCAAATAATACGAAAACCATAGTAC 57.009 29.630 0.00 0.00 0.00 2.73
2292 3875 8.614346 GCAAATAATACGAAAACCATAGTACCA 58.386 33.333 0.00 0.00 0.00 3.25
2298 3881 5.067954 ACGAAAACCATAGTACCAAAGCTT 58.932 37.500 0.00 0.00 0.00 3.74
2299 3882 5.048991 ACGAAAACCATAGTACCAAAGCTTG 60.049 40.000 0.00 0.00 0.00 4.01
2301 3884 5.959618 AAACCATAGTACCAAAGCTTGAC 57.040 39.130 0.00 0.00 0.00 3.18
2302 3885 3.951663 ACCATAGTACCAAAGCTTGACC 58.048 45.455 0.00 0.00 0.00 4.02
2303 3886 3.279434 CCATAGTACCAAAGCTTGACCC 58.721 50.000 0.00 0.00 0.00 4.46
2304 3887 3.308117 CCATAGTACCAAAGCTTGACCCA 60.308 47.826 0.00 0.00 0.00 4.51
2305 3888 4.331968 CATAGTACCAAAGCTTGACCCAA 58.668 43.478 0.00 0.00 0.00 4.12
2306 3889 2.863809 AGTACCAAAGCTTGACCCAAG 58.136 47.619 0.00 2.54 43.57 3.61
2308 3891 1.692411 ACCAAAGCTTGACCCAAGTC 58.308 50.000 0.00 1.96 42.77 3.01
2309 3892 1.215423 ACCAAAGCTTGACCCAAGTCT 59.785 47.619 0.00 3.92 42.77 3.24
2310 3893 2.310538 CCAAAGCTTGACCCAAGTCTT 58.689 47.619 0.00 8.77 42.77 3.01
2314 3897 5.163457 CCAAAGCTTGACCCAAGTCTTAAAA 60.163 40.000 0.00 0.00 42.77 1.52
2316 3899 4.793201 AGCTTGACCCAAGTCTTAAAACT 58.207 39.130 8.29 0.00 42.77 2.66
2317 3900 5.937111 AGCTTGACCCAAGTCTTAAAACTA 58.063 37.500 8.29 0.00 42.77 2.24
2318 3901 6.362248 AGCTTGACCCAAGTCTTAAAACTAA 58.638 36.000 8.29 0.00 42.77 2.24
2320 3903 7.505923 AGCTTGACCCAAGTCTTAAAACTAAAT 59.494 33.333 8.29 0.00 42.77 1.40
2350 3933 9.397280 AGACATAAAAAGAACTAGATAAAGGCC 57.603 33.333 0.00 0.00 0.00 5.19
2351 3934 8.521170 ACATAAAAAGAACTAGATAAAGGCCC 57.479 34.615 0.00 0.00 0.00 5.80
2353 3936 9.136323 CATAAAAAGAACTAGATAAAGGCCCAT 57.864 33.333 0.00 0.00 0.00 4.00
2354 3937 7.646548 AAAAAGAACTAGATAAAGGCCCATC 57.353 36.000 0.00 0.00 0.00 3.51
2381 3964 2.202492 CGCCGTCGTCTTCTGGAG 60.202 66.667 0.00 0.00 0.00 3.86
2383 3966 1.289380 GCCGTCGTCTTCTGGAGTT 59.711 57.895 0.00 0.00 0.00 3.01
2384 3967 1.009389 GCCGTCGTCTTCTGGAGTTG 61.009 60.000 0.00 0.00 0.00 3.16
2387 4140 1.009389 GTCGTCTTCTGGAGTTGCCG 61.009 60.000 0.00 0.00 40.66 5.69
2392 4145 0.895530 CTTCTGGAGTTGCCGTCCTA 59.104 55.000 0.00 0.00 40.66 2.94
2396 4149 1.139095 GGAGTTGCCGTCCTACTCG 59.861 63.158 8.13 0.00 44.13 4.18
2397 4150 1.516603 GAGTTGCCGTCCTACTCGC 60.517 63.158 0.00 0.00 36.77 5.03
2400 4153 2.355986 TTGCCGTCCTACTCGCCAT 61.356 57.895 0.00 0.00 0.00 4.40
2401 4154 2.027751 GCCGTCCTACTCGCCATC 59.972 66.667 0.00 0.00 0.00 3.51
2403 4156 2.478890 CCGTCCTACTCGCCATCGT 61.479 63.158 0.00 0.00 36.96 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.825709 TCTAATCACCCCTCATTATTCCAAAT 58.174 34.615 0.00 0.00 0.00 2.32
1 2 7.128728 TCTCTAATCACCCCTCATTATTCCAAA 59.871 37.037 0.00 0.00 0.00 3.28
2 3 6.619437 TCTCTAATCACCCCTCATTATTCCAA 59.381 38.462 0.00 0.00 0.00 3.53
3 4 6.150332 TCTCTAATCACCCCTCATTATTCCA 58.850 40.000 0.00 0.00 0.00 3.53
4 5 6.688073 TCTCTAATCACCCCTCATTATTCC 57.312 41.667 0.00 0.00 0.00 3.01
8 9 8.660435 CCTTTAATCTCTAATCACCCCTCATTA 58.340 37.037 0.00 0.00 0.00 1.90
9 10 7.129504 ACCTTTAATCTCTAATCACCCCTCATT 59.870 37.037 0.00 0.00 0.00 2.57
10 11 6.621514 ACCTTTAATCTCTAATCACCCCTCAT 59.378 38.462 0.00 0.00 0.00 2.90
11 12 5.970640 ACCTTTAATCTCTAATCACCCCTCA 59.029 40.000 0.00 0.00 0.00 3.86
12 13 6.502074 ACCTTTAATCTCTAATCACCCCTC 57.498 41.667 0.00 0.00 0.00 4.30
13 14 6.910259 AACCTTTAATCTCTAATCACCCCT 57.090 37.500 0.00 0.00 0.00 4.79
14 15 9.642343 ATTTAACCTTTAATCTCTAATCACCCC 57.358 33.333 0.00 0.00 0.00 4.95
22 23 9.959721 ACTGCTCAATTTAACCTTTAATCTCTA 57.040 29.630 0.00 0.00 0.00 2.43
23 24 8.734386 CACTGCTCAATTTAACCTTTAATCTCT 58.266 33.333 0.00 0.00 0.00 3.10
24 25 8.730680 TCACTGCTCAATTTAACCTTTAATCTC 58.269 33.333 0.00 0.00 0.00 2.75
25 26 8.635765 TCACTGCTCAATTTAACCTTTAATCT 57.364 30.769 0.00 0.00 0.00 2.40
26 27 9.294030 CATCACTGCTCAATTTAACCTTTAATC 57.706 33.333 0.00 0.00 0.00 1.75
27 28 9.023962 TCATCACTGCTCAATTTAACCTTTAAT 57.976 29.630 0.00 0.00 0.00 1.40
28 29 8.402798 TCATCACTGCTCAATTTAACCTTTAA 57.597 30.769 0.00 0.00 0.00 1.52
29 30 7.121168 CCTCATCACTGCTCAATTTAACCTTTA 59.879 37.037 0.00 0.00 0.00 1.85
30 31 6.071728 CCTCATCACTGCTCAATTTAACCTTT 60.072 38.462 0.00 0.00 0.00 3.11
31 32 5.416952 CCTCATCACTGCTCAATTTAACCTT 59.583 40.000 0.00 0.00 0.00 3.50
32 33 4.946157 CCTCATCACTGCTCAATTTAACCT 59.054 41.667 0.00 0.00 0.00 3.50
33 34 4.096984 CCCTCATCACTGCTCAATTTAACC 59.903 45.833 0.00 0.00 0.00 2.85
34 35 4.096984 CCCCTCATCACTGCTCAATTTAAC 59.903 45.833 0.00 0.00 0.00 2.01
35 36 4.263905 ACCCCTCATCACTGCTCAATTTAA 60.264 41.667 0.00 0.00 0.00 1.52
36 37 3.266772 ACCCCTCATCACTGCTCAATTTA 59.733 43.478 0.00 0.00 0.00 1.40
37 38 2.042162 ACCCCTCATCACTGCTCAATTT 59.958 45.455 0.00 0.00 0.00 1.82
38 39 1.637553 ACCCCTCATCACTGCTCAATT 59.362 47.619 0.00 0.00 0.00 2.32
39 40 1.064906 CACCCCTCATCACTGCTCAAT 60.065 52.381 0.00 0.00 0.00 2.57
40 41 0.325933 CACCCCTCATCACTGCTCAA 59.674 55.000 0.00 0.00 0.00 3.02
41 42 0.545071 TCACCCCTCATCACTGCTCA 60.545 55.000 0.00 0.00 0.00 4.26
42 43 0.835941 ATCACCCCTCATCACTGCTC 59.164 55.000 0.00 0.00 0.00 4.26
43 44 1.293062 AATCACCCCTCATCACTGCT 58.707 50.000 0.00 0.00 0.00 4.24
44 45 2.435805 TCTAATCACCCCTCATCACTGC 59.564 50.000 0.00 0.00 0.00 4.40
45 46 3.963374 TCTCTAATCACCCCTCATCACTG 59.037 47.826 0.00 0.00 0.00 3.66
46 47 4.271807 TCTCTAATCACCCCTCATCACT 57.728 45.455 0.00 0.00 0.00 3.41
47 48 5.559148 AATCTCTAATCACCCCTCATCAC 57.441 43.478 0.00 0.00 0.00 3.06
48 49 6.624297 TCTAATCTCTAATCACCCCTCATCA 58.376 40.000 0.00 0.00 0.00 3.07
49 50 6.154363 CCTCTAATCTCTAATCACCCCTCATC 59.846 46.154 0.00 0.00 0.00 2.92
50 51 6.022315 CCTCTAATCTCTAATCACCCCTCAT 58.978 44.000 0.00 0.00 0.00 2.90
51 52 5.103043 ACCTCTAATCTCTAATCACCCCTCA 60.103 44.000 0.00 0.00 0.00 3.86
52 53 5.399113 ACCTCTAATCTCTAATCACCCCTC 58.601 45.833 0.00 0.00 0.00 4.30
53 54 5.103043 TGACCTCTAATCTCTAATCACCCCT 60.103 44.000 0.00 0.00 0.00 4.79
54 55 5.148502 TGACCTCTAATCTCTAATCACCCC 58.851 45.833 0.00 0.00 0.00 4.95
55 56 6.732896 TTGACCTCTAATCTCTAATCACCC 57.267 41.667 0.00 0.00 0.00 4.61
118 119 9.470399 ACCGGTACTAAAGGAAATTTTATGATT 57.530 29.630 4.49 0.00 32.01 2.57
119 120 9.470399 AACCGGTACTAAAGGAAATTTTATGAT 57.530 29.630 8.00 0.00 32.01 2.45
120 121 8.732531 CAACCGGTACTAAAGGAAATTTTATGA 58.267 33.333 8.00 0.00 32.01 2.15
121 122 7.971722 CCAACCGGTACTAAAGGAAATTTTATG 59.028 37.037 8.00 0.00 32.01 1.90
122 123 7.670979 ACCAACCGGTACTAAAGGAAATTTTAT 59.329 33.333 8.00 0.00 46.71 1.40
123 124 7.003482 ACCAACCGGTACTAAAGGAAATTTTA 58.997 34.615 8.00 0.00 46.71 1.52
124 125 5.834742 ACCAACCGGTACTAAAGGAAATTTT 59.165 36.000 8.00 0.00 46.71 1.82
125 126 5.242171 CACCAACCGGTACTAAAGGAAATTT 59.758 40.000 8.00 0.00 46.94 1.82
126 127 4.763279 CACCAACCGGTACTAAAGGAAATT 59.237 41.667 8.00 0.00 46.94 1.82
127 128 4.202493 ACACCAACCGGTACTAAAGGAAAT 60.202 41.667 8.00 0.00 46.94 2.17
128 129 3.136260 ACACCAACCGGTACTAAAGGAAA 59.864 43.478 8.00 0.00 46.94 3.13
129 130 2.705127 ACACCAACCGGTACTAAAGGAA 59.295 45.455 8.00 0.00 46.94 3.36
130 131 2.328319 ACACCAACCGGTACTAAAGGA 58.672 47.619 8.00 0.00 46.94 3.36
131 132 2.845363 ACACCAACCGGTACTAAAGG 57.155 50.000 8.00 6.03 46.94 3.11
132 133 3.996363 GGTAACACCAACCGGTACTAAAG 59.004 47.826 8.00 0.00 46.94 1.85
133 134 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
134 135 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
149 150 6.095021 GTCCATCTTTAGTCCCAATTGGTAAC 59.905 42.308 22.91 19.02 34.77 2.50
150 151 6.184789 GTCCATCTTTAGTCCCAATTGGTAA 58.815 40.000 22.91 12.18 34.77 2.85
151 152 5.339695 GGTCCATCTTTAGTCCCAATTGGTA 60.340 44.000 22.91 4.37 34.77 3.25
152 153 4.569865 GGTCCATCTTTAGTCCCAATTGGT 60.570 45.833 22.91 7.51 34.77 3.67
153 154 3.954258 GGTCCATCTTTAGTCCCAATTGG 59.046 47.826 18.21 18.21 0.00 3.16
154 155 4.860022 AGGTCCATCTTTAGTCCCAATTG 58.140 43.478 0.00 0.00 0.00 2.32
155 156 4.079730 GGAGGTCCATCTTTAGTCCCAATT 60.080 45.833 0.00 0.00 35.64 2.32
156 157 3.459969 GGAGGTCCATCTTTAGTCCCAAT 59.540 47.826 0.00 0.00 35.64 3.16
157 158 2.844348 GGAGGTCCATCTTTAGTCCCAA 59.156 50.000 0.00 0.00 35.64 4.12
158 159 2.225779 TGGAGGTCCATCTTTAGTCCCA 60.226 50.000 0.00 0.00 42.01 4.37
159 160 2.436173 CTGGAGGTCCATCTTTAGTCCC 59.564 54.545 0.00 0.00 46.46 4.46
160 161 2.436173 CCTGGAGGTCCATCTTTAGTCC 59.564 54.545 0.00 0.00 46.46 3.85
161 162 2.158885 GCCTGGAGGTCCATCTTTAGTC 60.159 54.545 0.00 0.00 46.46 2.59
162 163 1.840635 GCCTGGAGGTCCATCTTTAGT 59.159 52.381 0.00 0.00 46.46 2.24
163 164 1.839994 TGCCTGGAGGTCCATCTTTAG 59.160 52.381 0.00 0.00 46.46 1.85
164 165 1.839994 CTGCCTGGAGGTCCATCTTTA 59.160 52.381 0.00 0.00 46.46 1.85
165 166 0.622665 CTGCCTGGAGGTCCATCTTT 59.377 55.000 0.00 0.00 46.46 2.52
166 167 1.919600 GCTGCCTGGAGGTCCATCTT 61.920 60.000 0.00 0.00 46.46 2.40
167 168 2.373707 GCTGCCTGGAGGTCCATCT 61.374 63.158 0.00 0.00 46.46 2.90
168 169 2.191641 GCTGCCTGGAGGTCCATC 59.808 66.667 0.00 0.00 46.46 3.51
169 170 3.790437 CGCTGCCTGGAGGTCCAT 61.790 66.667 0.00 0.00 46.46 3.41
188 189 0.323629 TCTAAAGGCCCTTCACGTGG 59.676 55.000 17.00 0.00 0.00 4.94
189 190 1.002087 AGTCTAAAGGCCCTTCACGTG 59.998 52.381 9.94 9.94 0.00 4.49
190 191 1.349067 AGTCTAAAGGCCCTTCACGT 58.651 50.000 0.00 0.00 0.00 4.49
191 192 3.604875 TTAGTCTAAAGGCCCTTCACG 57.395 47.619 0.00 0.00 0.00 4.35
201 202 3.116174 AGCCTCCCCCTTTAGTCTAAAG 58.884 50.000 21.06 21.06 43.64 1.85
202 203 3.216230 AGCCTCCCCCTTTAGTCTAAA 57.784 47.619 4.97 4.97 0.00 1.85
203 204 2.963654 AGCCTCCCCCTTTAGTCTAA 57.036 50.000 0.00 0.00 0.00 2.10
204 205 2.963654 AAGCCTCCCCCTTTAGTCTA 57.036 50.000 0.00 0.00 0.00 2.59
205 206 2.061264 AAAGCCTCCCCCTTTAGTCT 57.939 50.000 0.00 0.00 31.17 3.24
206 207 3.562343 CTAAAGCCTCCCCCTTTAGTC 57.438 52.381 11.01 0.00 43.17 2.59
209 210 3.117745 GGTACTAAAGCCTCCCCCTTTA 58.882 50.000 0.00 0.00 34.58 1.85
210 211 1.921049 GGTACTAAAGCCTCCCCCTTT 59.079 52.381 0.00 0.00 36.55 3.11
211 212 1.592948 GGTACTAAAGCCTCCCCCTT 58.407 55.000 0.00 0.00 0.00 3.95
212 213 0.690077 CGGTACTAAAGCCTCCCCCT 60.690 60.000 0.00 0.00 0.00 4.79
213 214 0.688749 TCGGTACTAAAGCCTCCCCC 60.689 60.000 0.00 0.00 0.00 5.40
214 215 0.463204 GTCGGTACTAAAGCCTCCCC 59.537 60.000 0.00 0.00 0.00 4.81
215 216 0.463204 GGTCGGTACTAAAGCCTCCC 59.537 60.000 0.00 0.00 0.00 4.30
216 217 0.463204 GGGTCGGTACTAAAGCCTCC 59.537 60.000 0.00 0.00 0.00 4.30
217 218 1.482954 AGGGTCGGTACTAAAGCCTC 58.517 55.000 7.36 0.00 36.14 4.70
218 219 1.948391 AAGGGTCGGTACTAAAGCCT 58.052 50.000 7.36 7.36 42.52 4.58
219 220 2.775911 AAAGGGTCGGTACTAAAGCC 57.224 50.000 0.00 0.00 0.00 4.35
220 221 4.813161 GGATTAAAGGGTCGGTACTAAAGC 59.187 45.833 0.00 0.00 0.00 3.51
221 222 5.363101 GGGATTAAAGGGTCGGTACTAAAG 58.637 45.833 0.00 0.00 0.00 1.85
222 223 4.141959 CGGGATTAAAGGGTCGGTACTAAA 60.142 45.833 0.00 0.00 0.00 1.85
223 224 3.384467 CGGGATTAAAGGGTCGGTACTAA 59.616 47.826 0.00 0.00 0.00 2.24
224 225 2.958355 CGGGATTAAAGGGTCGGTACTA 59.042 50.000 0.00 0.00 0.00 1.82
225 226 1.758862 CGGGATTAAAGGGTCGGTACT 59.241 52.381 0.00 0.00 0.00 2.73
226 227 1.202568 CCGGGATTAAAGGGTCGGTAC 60.203 57.143 0.00 0.00 33.63 3.34
227 228 1.122227 CCGGGATTAAAGGGTCGGTA 58.878 55.000 0.00 0.00 33.63 4.02
228 229 0.911045 ACCGGGATTAAAGGGTCGGT 60.911 55.000 6.32 0.00 44.72 4.69
229 230 0.253894 AACCGGGATTAAAGGGTCGG 59.746 55.000 6.32 0.00 42.69 4.79
230 231 2.011947 GAAACCGGGATTAAAGGGTCG 58.988 52.381 6.32 0.00 30.99 4.79
231 232 3.014623 CTGAAACCGGGATTAAAGGGTC 58.985 50.000 6.32 0.00 30.99 4.46
232 233 2.645797 TCTGAAACCGGGATTAAAGGGT 59.354 45.455 6.32 0.00 0.00 4.34
233 234 3.359695 TCTGAAACCGGGATTAAAGGG 57.640 47.619 6.32 0.00 0.00 3.95
234 235 4.076394 TGTTCTGAAACCGGGATTAAAGG 58.924 43.478 6.32 0.00 34.28 3.11
235 236 4.156008 CCTGTTCTGAAACCGGGATTAAAG 59.844 45.833 6.32 2.46 36.43 1.85
236 237 4.076394 CCTGTTCTGAAACCGGGATTAAA 58.924 43.478 6.32 0.00 36.43 1.52
237 238 3.681593 CCTGTTCTGAAACCGGGATTAA 58.318 45.455 6.32 0.00 36.43 1.40
238 239 3.343941 CCTGTTCTGAAACCGGGATTA 57.656 47.619 6.32 0.00 36.43 1.75
239 240 2.200373 CCTGTTCTGAAACCGGGATT 57.800 50.000 6.32 0.00 36.43 3.01
240 241 3.957288 CCTGTTCTGAAACCGGGAT 57.043 52.632 6.32 0.00 36.43 3.85
243 244 0.396811 AGTCCCTGTTCTGAAACCGG 59.603 55.000 0.00 0.00 38.95 5.28
244 245 1.070134 TCAGTCCCTGTTCTGAAACCG 59.930 52.381 0.00 0.00 37.69 4.44
245 246 2.930826 TCAGTCCCTGTTCTGAAACC 57.069 50.000 0.00 0.00 37.69 3.27
248 249 1.070134 CGGTTCAGTCCCTGTTCTGAA 59.930 52.381 3.91 3.91 44.80 3.02
249 250 0.679505 CGGTTCAGTCCCTGTTCTGA 59.320 55.000 0.00 0.00 38.66 3.27
250 251 0.320771 CCGGTTCAGTCCCTGTTCTG 60.321 60.000 0.00 0.00 32.61 3.02
251 252 1.481056 CCCGGTTCAGTCCCTGTTCT 61.481 60.000 0.00 0.00 32.61 3.01
252 253 1.003718 CCCGGTTCAGTCCCTGTTC 60.004 63.158 0.00 0.00 32.61 3.18
253 254 1.460689 TCCCGGTTCAGTCCCTGTT 60.461 57.895 0.00 0.00 32.61 3.16
254 255 2.203182 TCCCGGTTCAGTCCCTGT 59.797 61.111 0.00 0.00 32.61 4.00
255 256 0.613853 TAGTCCCGGTTCAGTCCCTG 60.614 60.000 0.00 0.00 0.00 4.45
256 257 0.115745 TTAGTCCCGGTTCAGTCCCT 59.884 55.000 0.00 0.00 0.00 4.20
257 258 0.978907 TTTAGTCCCGGTTCAGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
258 259 1.066358 CCTTTAGTCCCGGTTCAGTCC 60.066 57.143 0.00 0.00 0.00 3.85
259 260 1.675116 GCCTTTAGTCCCGGTTCAGTC 60.675 57.143 0.00 0.00 0.00 3.51
260 261 0.323957 GCCTTTAGTCCCGGTTCAGT 59.676 55.000 0.00 0.00 0.00 3.41
261 262 0.392595 GGCCTTTAGTCCCGGTTCAG 60.393 60.000 0.00 0.00 0.00 3.02
262 263 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
263 264 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
264 265 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
268 269 3.170991 AGAAAAAGGGCCTTTAGTCCC 57.829 47.619 30.64 17.17 42.94 4.46
269 270 4.919793 AGTAGAAAAAGGGCCTTTAGTCC 58.080 43.478 30.64 18.75 31.99 3.85
270 271 6.594547 CACTAGTAGAAAAAGGGCCTTTAGTC 59.405 42.308 30.64 27.22 31.99 2.59
271 272 6.473758 CACTAGTAGAAAAAGGGCCTTTAGT 58.526 40.000 30.64 23.63 31.99 2.24
272 273 5.880887 CCACTAGTAGAAAAAGGGCCTTTAG 59.119 44.000 30.64 23.01 31.99 1.85
273 274 5.548836 TCCACTAGTAGAAAAAGGGCCTTTA 59.451 40.000 30.64 13.42 31.99 1.85
274 275 4.352893 TCCACTAGTAGAAAAAGGGCCTTT 59.647 41.667 25.68 25.68 34.94 3.11
275 276 3.914435 TCCACTAGTAGAAAAAGGGCCTT 59.086 43.478 14.48 14.48 0.00 4.35
276 277 3.519913 CTCCACTAGTAGAAAAAGGGCCT 59.480 47.826 0.00 0.00 0.00 5.19
277 278 3.518303 TCTCCACTAGTAGAAAAAGGGCC 59.482 47.826 3.59 0.00 0.00 5.80
278 279 4.820894 TCTCCACTAGTAGAAAAAGGGC 57.179 45.455 3.59 0.00 0.00 5.19
279 280 6.110411 TGTTCTCCACTAGTAGAAAAAGGG 57.890 41.667 9.23 0.00 33.70 3.95
280 281 8.507249 CAATTGTTCTCCACTAGTAGAAAAAGG 58.493 37.037 13.82 7.37 33.55 3.11
281 282 8.507249 CCAATTGTTCTCCACTAGTAGAAAAAG 58.493 37.037 13.82 4.74 33.55 2.27
282 283 8.215050 TCCAATTGTTCTCCACTAGTAGAAAAA 58.785 33.333 11.69 11.69 34.33 1.94
283 284 7.741785 TCCAATTGTTCTCCACTAGTAGAAAA 58.258 34.615 9.23 2.46 33.70 2.29
284 285 7.311092 TCCAATTGTTCTCCACTAGTAGAAA 57.689 36.000 9.23 0.00 33.70 2.52
285 286 6.928348 TCCAATTGTTCTCCACTAGTAGAA 57.072 37.500 3.59 4.30 0.00 2.10
286 287 6.127054 CCATCCAATTGTTCTCCACTAGTAGA 60.127 42.308 3.59 0.00 0.00 2.59
287 288 6.051717 CCATCCAATTGTTCTCCACTAGTAG 58.948 44.000 4.43 0.00 0.00 2.57
288 289 5.629133 GCCATCCAATTGTTCTCCACTAGTA 60.629 44.000 4.43 0.00 0.00 1.82
289 290 4.848357 CCATCCAATTGTTCTCCACTAGT 58.152 43.478 4.43 0.00 0.00 2.57
290 291 3.629398 GCCATCCAATTGTTCTCCACTAG 59.371 47.826 4.43 0.00 0.00 2.57
291 292 3.266772 AGCCATCCAATTGTTCTCCACTA 59.733 43.478 4.43 0.00 0.00 2.74
292 293 2.042162 AGCCATCCAATTGTTCTCCACT 59.958 45.455 4.43 0.00 0.00 4.00
293 294 2.450476 AGCCATCCAATTGTTCTCCAC 58.550 47.619 4.43 0.00 0.00 4.02
294 295 2.905415 AGCCATCCAATTGTTCTCCA 57.095 45.000 4.43 0.00 0.00 3.86
306 307 2.817844 AGTCGTTTAACCAAAGCCATCC 59.182 45.455 0.00 0.00 0.00 3.51
308 309 3.058501 CGAAGTCGTTTAACCAAAGCCAT 60.059 43.478 0.00 0.00 34.11 4.40
320 321 3.988517 GGAAGAAGATGTCGAAGTCGTTT 59.011 43.478 0.00 0.00 40.80 3.60
322 323 2.557056 TGGAAGAAGATGTCGAAGTCGT 59.443 45.455 0.00 0.00 40.80 4.34
363 365 1.298859 CCGAGAGTTGGAAAAGCCGG 61.299 60.000 0.00 0.00 40.66 6.13
364 366 1.298859 CCCGAGAGTTGGAAAAGCCG 61.299 60.000 0.00 0.00 40.66 5.52
365 367 0.036306 TCCCGAGAGTTGGAAAAGCC 59.964 55.000 0.00 0.00 37.10 4.35
367 369 1.071699 TGGTCCCGAGAGTTGGAAAAG 59.928 52.381 0.00 0.00 31.03 2.27
368 370 1.133363 TGGTCCCGAGAGTTGGAAAA 58.867 50.000 0.00 0.00 31.03 2.29
370 372 1.003118 CATTGGTCCCGAGAGTTGGAA 59.997 52.381 0.00 0.00 31.03 3.53
371 373 0.613260 CATTGGTCCCGAGAGTTGGA 59.387 55.000 0.00 0.00 0.00 3.53
372 374 0.613260 TCATTGGTCCCGAGAGTTGG 59.387 55.000 0.00 0.00 0.00 3.77
373 375 2.093500 TCATCATTGGTCCCGAGAGTTG 60.093 50.000 0.00 0.00 0.00 3.16
374 376 2.187958 TCATCATTGGTCCCGAGAGTT 58.812 47.619 0.00 0.00 0.00 3.01
375 377 1.866015 TCATCATTGGTCCCGAGAGT 58.134 50.000 0.00 0.00 0.00 3.24
376 378 2.366590 TCATCATCATTGGTCCCGAGAG 59.633 50.000 0.00 0.00 0.00 3.20
377 379 2.397597 TCATCATCATTGGTCCCGAGA 58.602 47.619 0.00 0.00 0.00 4.04
378 380 2.916702 TCATCATCATTGGTCCCGAG 57.083 50.000 0.00 0.00 0.00 4.63
379 381 3.862877 ATTCATCATCATTGGTCCCGA 57.137 42.857 0.00 0.00 0.00 5.14
380 382 3.551454 GCAATTCATCATCATTGGTCCCG 60.551 47.826 0.00 0.00 31.97 5.14
381 383 3.385433 TGCAATTCATCATCATTGGTCCC 59.615 43.478 0.00 0.00 31.97 4.46
382 384 4.659111 TGCAATTCATCATCATTGGTCC 57.341 40.909 0.00 0.00 31.97 4.46
383 385 4.506654 GCTTGCAATTCATCATCATTGGTC 59.493 41.667 0.00 0.00 31.97 4.02
384 386 4.439057 GCTTGCAATTCATCATCATTGGT 58.561 39.130 0.00 0.00 31.97 3.67
385 387 3.807622 GGCTTGCAATTCATCATCATTGG 59.192 43.478 0.00 0.00 31.97 3.16
386 388 4.438148 TGGCTTGCAATTCATCATCATTG 58.562 39.130 0.00 0.00 34.09 2.82
387 389 4.746535 TGGCTTGCAATTCATCATCATT 57.253 36.364 0.00 0.00 0.00 2.57
391 393 6.964807 TTAGTATGGCTTGCAATTCATCAT 57.035 33.333 15.13 10.16 0.00 2.45
397 399 7.725397 TCATCCTATTTAGTATGGCTTGCAATT 59.275 33.333 0.00 0.00 0.00 2.32
407 409 7.814587 TGTCGAAGCATCATCCTATTTAGTATG 59.185 37.037 0.00 0.00 0.00 2.39
414 416 5.824624 ACATTTGTCGAAGCATCATCCTATT 59.175 36.000 0.00 0.00 0.00 1.73
416 418 4.769688 ACATTTGTCGAAGCATCATCCTA 58.230 39.130 0.00 0.00 0.00 2.94
417 419 3.614092 ACATTTGTCGAAGCATCATCCT 58.386 40.909 0.00 0.00 0.00 3.24
459 461 2.736995 CTCGGCGCTTGAAACGGA 60.737 61.111 7.64 0.00 0.00 4.69
460 462 3.041940 ACTCGGCGCTTGAAACGG 61.042 61.111 7.64 0.00 0.00 4.44
472 474 1.453155 AAACTGCAATAGCCACTCGG 58.547 50.000 0.00 0.00 41.13 4.63
477 479 5.563867 CGGACTTTAAAAACTGCAATAGCCA 60.564 40.000 0.00 0.00 41.13 4.75
478 480 4.857037 CGGACTTTAAAAACTGCAATAGCC 59.143 41.667 0.00 0.00 41.13 3.93
479 481 4.857037 CCGGACTTTAAAAACTGCAATAGC 59.143 41.667 0.00 0.00 42.57 2.97
500 502 1.148310 CAAGCTCACTGGTTGTACCG 58.852 55.000 0.00 0.00 45.89 4.02
508 510 2.224281 TGAACACCTACAAGCTCACTGG 60.224 50.000 0.00 0.00 0.00 4.00
509 511 3.111853 TGAACACCTACAAGCTCACTG 57.888 47.619 0.00 0.00 0.00 3.66
512 514 5.376625 AGAAAATGAACACCTACAAGCTCA 58.623 37.500 0.00 0.00 0.00 4.26
514 516 6.715347 AAAGAAAATGAACACCTACAAGCT 57.285 33.333 0.00 0.00 0.00 3.74
515 517 8.915654 CAATAAAGAAAATGAACACCTACAAGC 58.084 33.333 0.00 0.00 0.00 4.01
516 518 9.965824 ACAATAAAGAAAATGAACACCTACAAG 57.034 29.630 0.00 0.00 0.00 3.16
527 529 8.919145 ACACCTAACCAACAATAAAGAAAATGA 58.081 29.630 0.00 0.00 0.00 2.57
533 535 8.927675 ACATTACACCTAACCAACAATAAAGA 57.072 30.769 0.00 0.00 0.00 2.52
539 541 9.357161 AGATTAAACATTACACCTAACCAACAA 57.643 29.630 0.00 0.00 0.00 2.83
557 559 1.027792 TTGCCCGCCCGAGATTAAAC 61.028 55.000 0.00 0.00 0.00 2.01
567 569 0.036483 ATTTTGATTGTTGCCCGCCC 60.036 50.000 0.00 0.00 0.00 6.13
571 573 5.138125 TCTTCTGATTTTGATTGTTGCCC 57.862 39.130 0.00 0.00 0.00 5.36
649 652 6.203338 TCAGTACAATAAAAAGACAACCGGAC 59.797 38.462 9.46 0.00 0.00 4.79
652 655 7.186021 AGTCAGTACAATAAAAAGACAACCG 57.814 36.000 0.00 0.00 0.00 4.44
773 788 4.950475 GGTCCTCCTTTTTAGGGAATCTTG 59.050 45.833 0.00 0.00 34.66 3.02
865 881 2.236395 GGAAGGAATCTCAAGGAACGGA 59.764 50.000 0.00 0.00 0.00 4.69
866 882 2.633488 GGAAGGAATCTCAAGGAACGG 58.367 52.381 0.00 0.00 0.00 4.44
867 883 2.633488 GGGAAGGAATCTCAAGGAACG 58.367 52.381 0.00 0.00 0.00 3.95
868 884 2.357257 GGGGGAAGGAATCTCAAGGAAC 60.357 54.545 0.00 0.00 0.00 3.62
869 885 1.923148 GGGGGAAGGAATCTCAAGGAA 59.077 52.381 0.00 0.00 0.00 3.36
1174 1194 5.287806 CGACGACGAACCAATCAATGGAC 62.288 52.174 0.00 0.00 46.89 4.02
1375 1396 2.343758 GAAGCACAGGAGGTCGCA 59.656 61.111 0.00 0.00 0.00 5.10
1389 1410 5.403246 CAGATTAAGATATCCCCGACGAAG 58.597 45.833 0.00 0.00 0.00 3.79
1407 1428 1.065564 GGAGCTGGACAAGAGCAGATT 60.066 52.381 0.00 0.00 39.05 2.40
1416 1437 1.299648 CGGGATTGGAGCTGGACAA 59.700 57.895 0.00 0.00 0.00 3.18
1433 1454 0.028242 CCGACGAATGAGACTCTCCG 59.972 60.000 3.68 7.03 0.00 4.63
1435 1456 0.590230 CGCCGACGAATGAGACTCTC 60.590 60.000 3.68 0.00 43.93 3.20
1497 1528 6.705381 GGTATGAACTCTGATTCTGATTCTGG 59.295 42.308 6.60 2.11 0.00 3.86
1581 1616 3.194968 AGGAGATTGGCAAAATTCTGCAG 59.805 43.478 18.84 7.63 44.52 4.41
1590 1625 3.765381 TGACATCAAGGAGATTGGCAAA 58.235 40.909 3.01 0.00 39.54 3.68
1610 1645 4.037327 TCGGCAGAATCTAGAACAGAGATG 59.963 45.833 0.00 0.00 36.48 2.90
1615 1650 4.037327 TGAGATCGGCAGAATCTAGAACAG 59.963 45.833 0.00 0.00 0.00 3.16
1759 1807 7.228706 AGTGATTATTAGAAAAATACAGGGGCG 59.771 37.037 0.00 0.00 0.00 6.13
1784 1837 1.064208 CATCAGACACGACGGACCTAG 59.936 57.143 0.00 0.00 0.00 3.02
1804 1857 2.239201 GCGACGGCAACTTAAACATTC 58.761 47.619 0.00 0.00 39.62 2.67
1844 1897 0.250513 AGACTTGGGGAATCAGACGC 59.749 55.000 0.00 0.00 0.00 5.19
1921 1974 3.626996 CTGCCAGCCACGAATCCCA 62.627 63.158 0.00 0.00 0.00 4.37
1922 1975 2.825836 CTGCCAGCCACGAATCCC 60.826 66.667 0.00 0.00 0.00 3.85
1983 2036 4.087892 CAGGTGGAGCTCCGGTGG 62.088 72.222 27.43 13.50 39.43 4.61
2009 2062 3.353836 CAAAGGTGACCCGCCGTG 61.354 66.667 0.00 0.00 39.30 4.94
2010 2063 4.636435 CCAAAGGTGACCCGCCGT 62.636 66.667 0.00 0.00 39.30 5.68
2011 2064 4.636435 ACCAAAGGTGACCCGCCG 62.636 66.667 0.00 0.00 39.30 6.46
2020 2073 4.779475 CGAGAGCACACCAAAGGT 57.221 55.556 0.00 0.00 35.62 3.50
2038 2091 3.726595 TACGATCAAAGCGGGCCGG 62.727 63.158 29.48 11.17 0.00 6.13
2039 2092 2.202824 TACGATCAAAGCGGGCCG 60.203 61.111 24.35 24.35 0.00 6.13
2040 2093 1.887707 CCTACGATCAAAGCGGGCC 60.888 63.158 0.00 0.00 0.00 5.80
2041 2094 2.534903 GCCTACGATCAAAGCGGGC 61.535 63.158 0.00 0.00 0.00 6.13
2042 2095 0.532862 ATGCCTACGATCAAAGCGGG 60.533 55.000 0.00 0.00 0.00 6.13
2043 2096 0.861837 GATGCCTACGATCAAAGCGG 59.138 55.000 0.00 0.00 0.00 5.52
2045 2098 2.246719 AGGATGCCTACGATCAAAGC 57.753 50.000 0.00 0.00 28.47 3.51
2047 2100 7.348080 CCTATATAGGATGCCTACGATCAAA 57.652 40.000 22.53 0.00 46.63 2.69
2064 2117 8.730093 TTTGGGTACAAGTATGCTCCTATATA 57.270 34.615 0.00 0.00 37.97 0.86
2065 2118 7.626999 TTTGGGTACAAGTATGCTCCTATAT 57.373 36.000 0.00 0.00 37.97 0.86
2066 2119 7.291416 TCATTTGGGTACAAGTATGCTCCTATA 59.709 37.037 0.00 0.00 37.97 1.31
2067 2120 5.968676 TTTGGGTACAAGTATGCTCCTAT 57.031 39.130 0.00 0.00 37.97 2.57
2068 2121 5.427157 TCATTTGGGTACAAGTATGCTCCTA 59.573 40.000 0.00 0.00 37.97 2.94
2069 2122 4.227300 TCATTTGGGTACAAGTATGCTCCT 59.773 41.667 0.00 0.00 37.97 3.69
2070 2123 4.523083 TCATTTGGGTACAAGTATGCTCC 58.477 43.478 0.00 0.00 37.97 4.70
2071 2124 7.041098 CCTTATCATTTGGGTACAAGTATGCTC 60.041 40.741 0.00 0.00 37.97 4.26
2072 2125 6.772716 CCTTATCATTTGGGTACAAGTATGCT 59.227 38.462 0.00 0.00 37.97 3.79
2073 2126 6.515035 GCCTTATCATTTGGGTACAAGTATGC 60.515 42.308 0.00 0.00 37.97 3.14
2074 2127 6.016276 GGCCTTATCATTTGGGTACAAGTATG 60.016 42.308 0.00 0.00 37.97 2.39
2075 2128 6.068670 GGCCTTATCATTTGGGTACAAGTAT 58.931 40.000 0.00 0.00 37.97 2.12
2076 2129 5.044772 TGGCCTTATCATTTGGGTACAAGTA 60.045 40.000 3.32 0.00 37.97 2.24
2077 2130 4.264172 TGGCCTTATCATTTGGGTACAAGT 60.264 41.667 3.32 0.00 37.97 3.16
2078 2131 4.277476 TGGCCTTATCATTTGGGTACAAG 58.723 43.478 3.32 0.00 37.97 3.16
2079 2132 4.323569 TGGCCTTATCATTTGGGTACAA 57.676 40.909 3.32 0.00 34.07 2.41
2080 2133 4.020543 GTTGGCCTTATCATTTGGGTACA 58.979 43.478 3.32 0.00 0.00 2.90
2081 2134 4.278310 AGTTGGCCTTATCATTTGGGTAC 58.722 43.478 3.32 0.00 0.00 3.34
2082 2135 4.532834 GAGTTGGCCTTATCATTTGGGTA 58.467 43.478 3.32 0.00 0.00 3.69
2083 2136 3.365472 GAGTTGGCCTTATCATTTGGGT 58.635 45.455 3.32 0.00 0.00 4.51
2084 2137 2.695147 GGAGTTGGCCTTATCATTTGGG 59.305 50.000 3.32 0.00 0.00 4.12
2085 2138 3.364549 TGGAGTTGGCCTTATCATTTGG 58.635 45.455 3.32 0.00 0.00 3.28
2086 2139 4.675146 CGTTGGAGTTGGCCTTATCATTTG 60.675 45.833 3.32 0.00 0.00 2.32
2089 2142 2.643551 CGTTGGAGTTGGCCTTATCAT 58.356 47.619 3.32 0.00 0.00 2.45
2090 2143 1.948611 GCGTTGGAGTTGGCCTTATCA 60.949 52.381 3.32 0.00 0.00 2.15
2091 2144 0.733150 GCGTTGGAGTTGGCCTTATC 59.267 55.000 3.32 0.00 0.00 1.75
2092 2145 1.024579 CGCGTTGGAGTTGGCCTTAT 61.025 55.000 3.32 0.00 0.00 1.73
2093 2146 1.669760 CGCGTTGGAGTTGGCCTTA 60.670 57.895 3.32 0.00 0.00 2.69
2094 2147 2.978010 CGCGTTGGAGTTGGCCTT 60.978 61.111 3.32 0.00 0.00 4.35
2109 2162 4.736631 GTTCGTTTGGAGCCGCGC 62.737 66.667 0.00 0.00 0.00 6.86
2110 2163 3.342627 TGTTCGTTTGGAGCCGCG 61.343 61.111 0.00 0.00 0.00 6.46
2111 2164 2.171489 GAGTGTTCGTTTGGAGCCGC 62.171 60.000 0.00 0.00 0.00 6.53
2112 2165 1.860078 GAGTGTTCGTTTGGAGCCG 59.140 57.895 0.00 0.00 0.00 5.52
2113 2166 0.599204 TCGAGTGTTCGTTTGGAGCC 60.599 55.000 0.00 0.00 46.72 4.70
2115 2168 3.247648 ACAAATCGAGTGTTCGTTTGGAG 59.752 43.478 19.03 7.58 46.72 3.86
2117 2170 3.247648 AGACAAATCGAGTGTTCGTTTGG 59.752 43.478 19.03 9.94 46.72 3.28
2118 2171 4.203828 CAGACAAATCGAGTGTTCGTTTG 58.796 43.478 16.05 16.05 46.72 2.93
2120 2173 3.454375 ACAGACAAATCGAGTGTTCGTT 58.546 40.909 6.04 0.00 46.72 3.85
2121 2174 3.093717 ACAGACAAATCGAGTGTTCGT 57.906 42.857 6.04 4.33 46.72 3.85
2123 2176 5.234329 TCTGAAACAGACAAATCGAGTGTTC 59.766 40.000 6.04 0.00 35.39 3.18
2124 2177 5.116180 TCTGAAACAGACAAATCGAGTGTT 58.884 37.500 6.04 0.00 35.39 3.32
2125 2178 4.693283 TCTGAAACAGACAAATCGAGTGT 58.307 39.130 4.30 4.30 35.39 3.55
2137 2190 1.300620 CGGCCGTGTCTGAAACAGA 60.301 57.895 19.50 0.00 38.97 3.41
2138 2191 0.319211 TACGGCCGTGTCTGAAACAG 60.319 55.000 40.02 1.91 38.97 3.16
2139 2192 0.319083 ATACGGCCGTGTCTGAAACA 59.681 50.000 40.02 17.97 34.78 2.83
2140 2193 0.719465 CATACGGCCGTGTCTGAAAC 59.281 55.000 40.02 0.00 0.00 2.78
2141 2194 1.017177 GCATACGGCCGTGTCTGAAA 61.017 55.000 40.02 19.63 36.11 2.69
2142 2195 1.447140 GCATACGGCCGTGTCTGAA 60.447 57.895 40.02 20.46 36.11 3.02
2145 2198 1.447838 CAAGCATACGGCCGTGTCT 60.448 57.895 40.02 28.02 46.50 3.41
2146 2199 3.089784 CAAGCATACGGCCGTGTC 58.910 61.111 40.02 26.33 46.50 3.67
2148 2201 4.222589 CGCAAGCATACGGCCGTG 62.223 66.667 40.02 25.57 46.50 4.94
2154 2207 2.092291 ACACGACCGCAAGCATACG 61.092 57.895 0.00 0.00 0.00 3.06
2155 2208 1.011968 TCACACGACCGCAAGCATAC 61.012 55.000 0.00 0.00 0.00 2.39
2156 2209 1.011968 GTCACACGACCGCAAGCATA 61.012 55.000 0.00 0.00 36.02 3.14
2157 2210 2.030412 TCACACGACCGCAAGCAT 59.970 55.556 0.00 0.00 0.00 3.79
2158 2211 2.964925 GTCACACGACCGCAAGCA 60.965 61.111 0.00 0.00 36.02 3.91
2166 2219 2.380410 GCACCGATGGTCACACGAC 61.380 63.158 0.00 0.00 41.80 4.34
2168 2221 3.478394 CGCACCGATGGTCACACG 61.478 66.667 0.00 0.00 31.02 4.49
2169 2222 2.357034 ACGCACCGATGGTCACAC 60.357 61.111 0.00 0.00 31.02 3.82
2171 2224 2.813908 GGACGCACCGATGGTCAC 60.814 66.667 1.54 0.00 31.02 3.67
2172 2225 2.873525 TTGGACGCACCGATGGTCA 61.874 57.895 1.54 0.00 42.61 4.02
2173 2226 2.047655 TTGGACGCACCGATGGTC 60.048 61.111 0.00 0.00 42.61 4.02
2174 2227 2.358247 GTTGGACGCACCGATGGT 60.358 61.111 0.00 0.00 42.61 3.55
2176 2229 1.374125 TCTGTTGGACGCACCGATG 60.374 57.895 0.00 0.00 42.61 3.84
2177 2230 1.374252 GTCTGTTGGACGCACCGAT 60.374 57.895 0.00 0.00 42.61 4.18
2178 2231 2.028484 GTCTGTTGGACGCACCGA 59.972 61.111 0.00 0.00 42.61 4.69
2185 2238 0.320771 ACGAGGCATGTCTGTTGGAC 60.321 55.000 3.48 0.00 44.70 4.02
2187 2240 1.021390 GGACGAGGCATGTCTGTTGG 61.021 60.000 3.48 0.00 36.58 3.77
2190 2243 1.480212 TTGGGACGAGGCATGTCTGT 61.480 55.000 3.48 2.93 36.58 3.41
2193 2246 0.815615 GGATTGGGACGAGGCATGTC 60.816 60.000 0.00 0.00 35.60 3.06
2194 2247 1.224592 GGATTGGGACGAGGCATGT 59.775 57.895 0.00 0.00 0.00 3.21
2195 2248 1.889105 CGGATTGGGACGAGGCATG 60.889 63.158 0.00 0.00 0.00 4.06
2198 2251 2.202892 GACGGATTGGGACGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
2199 2252 2.499685 GGACGGATTGGGACGAGG 59.500 66.667 0.00 0.00 0.00 4.63
2200 2253 2.104331 CGGACGGATTGGGACGAG 59.896 66.667 0.00 0.00 0.00 4.18
2202 2255 3.766691 ACCGGACGGATTGGGACG 61.767 66.667 18.80 0.00 38.96 4.79
2205 2258 2.038269 CAACACCGGACGGATTGGG 61.038 63.158 18.80 3.97 38.96 4.12
2207 2260 1.573829 CCACAACACCGGACGGATTG 61.574 60.000 18.80 20.74 39.24 2.67
2208 2261 1.302192 CCACAACACCGGACGGATT 60.302 57.895 18.80 8.38 38.96 3.01
2209 2262 2.211410 TCCACAACACCGGACGGAT 61.211 57.895 18.80 1.91 38.96 4.18
2210 2263 2.838693 TCCACAACACCGGACGGA 60.839 61.111 18.80 0.84 38.96 4.69
2211 2264 2.663852 GTCCACAACACCGGACGG 60.664 66.667 9.46 9.56 42.19 4.79
2214 2267 0.542333 TTGAAGTCCACAACACCGGA 59.458 50.000 9.46 0.00 0.00 5.14
2215 2268 1.604604 ATTGAAGTCCACAACACCGG 58.395 50.000 0.00 0.00 0.00 5.28
2216 2269 3.708563 AAATTGAAGTCCACAACACCG 57.291 42.857 0.00 0.00 0.00 4.94
2260 3044 8.825667 ATGGTTTTCGTATTATTTGCAAGTTT 57.174 26.923 0.00 0.00 0.00 2.66
2261 3045 9.567848 CTATGGTTTTCGTATTATTTGCAAGTT 57.432 29.630 0.00 0.00 0.00 2.66
2275 3858 4.648651 AGCTTTGGTACTATGGTTTTCGT 58.351 39.130 0.00 0.00 0.00 3.85
2276 3859 5.180492 TCAAGCTTTGGTACTATGGTTTTCG 59.820 40.000 0.00 0.00 0.00 3.46
2278 3861 5.243060 GGTCAAGCTTTGGTACTATGGTTTT 59.757 40.000 0.00 0.00 0.00 2.43
2279 3862 4.765339 GGTCAAGCTTTGGTACTATGGTTT 59.235 41.667 0.00 0.00 0.00 3.27
2282 3865 3.279434 GGGTCAAGCTTTGGTACTATGG 58.721 50.000 0.00 0.00 0.00 2.74
2283 3866 3.950397 TGGGTCAAGCTTTGGTACTATG 58.050 45.455 0.00 0.00 0.00 2.23
2284 3867 4.042934 ACTTGGGTCAAGCTTTGGTACTAT 59.957 41.667 0.00 0.00 44.43 2.12
2287 3870 2.552743 GACTTGGGTCAAGCTTTGGTAC 59.447 50.000 0.00 0.00 44.43 3.34
2289 3872 1.215423 AGACTTGGGTCAAGCTTTGGT 59.785 47.619 0.00 0.00 44.43 3.67
2290 3873 1.986882 AGACTTGGGTCAAGCTTTGG 58.013 50.000 0.00 0.00 44.43 3.28
2292 3875 5.656859 AGTTTTAAGACTTGGGTCAAGCTTT 59.343 36.000 16.20 10.37 44.43 3.51
2293 3876 5.201243 AGTTTTAAGACTTGGGTCAAGCTT 58.799 37.500 15.68 15.68 44.43 3.74
2294 3877 4.793201 AGTTTTAAGACTTGGGTCAAGCT 58.207 39.130 7.48 3.85 44.43 3.74
2295 3878 6.628919 TTAGTTTTAAGACTTGGGTCAAGC 57.371 37.500 3.70 1.85 44.43 4.01
2324 3907 9.397280 GGCCTTTATCTAGTTCTTTTTATGTCT 57.603 33.333 0.00 0.00 0.00 3.41
2326 3909 8.113462 TGGGCCTTTATCTAGTTCTTTTTATGT 58.887 33.333 4.53 0.00 0.00 2.29
2328 3911 9.355916 GATGGGCCTTTATCTAGTTCTTTTTAT 57.644 33.333 4.53 0.00 0.00 1.40
2329 3912 7.497909 CGATGGGCCTTTATCTAGTTCTTTTTA 59.502 37.037 4.53 0.00 0.00 1.52
2330 3913 6.318900 CGATGGGCCTTTATCTAGTTCTTTTT 59.681 38.462 4.53 0.00 0.00 1.94
2331 3914 5.823045 CGATGGGCCTTTATCTAGTTCTTTT 59.177 40.000 4.53 0.00 0.00 2.27
2334 3917 3.244249 GCGATGGGCCTTTATCTAGTTCT 60.244 47.826 4.53 0.00 34.80 3.01
2336 3919 3.127425 GCGATGGGCCTTTATCTAGTT 57.873 47.619 4.53 0.00 34.80 2.24
2337 3920 2.841442 GCGATGGGCCTTTATCTAGT 57.159 50.000 4.53 0.00 34.80 2.57
2363 3946 3.685214 CTCCAGAAGACGACGGCGG 62.685 68.421 18.49 0.00 43.17 6.13
2364 3947 2.202492 CTCCAGAAGACGACGGCG 60.202 66.667 10.39 10.39 44.79 6.46
2365 3948 1.009389 CAACTCCAGAAGACGACGGC 61.009 60.000 0.00 0.00 0.00 5.68
2366 3949 1.009389 GCAACTCCAGAAGACGACGG 61.009 60.000 0.00 0.00 0.00 4.79
2368 3951 1.009389 CGGCAACTCCAGAAGACGAC 61.009 60.000 0.00 0.00 34.01 4.34
2369 3952 1.289066 CGGCAACTCCAGAAGACGA 59.711 57.895 0.00 0.00 34.01 4.20
2370 3953 1.006102 ACGGCAACTCCAGAAGACG 60.006 57.895 0.00 0.00 34.01 4.18
2371 3954 0.670854 GGACGGCAACTCCAGAAGAC 60.671 60.000 0.00 0.00 34.96 3.01
2372 3955 0.832135 AGGACGGCAACTCCAGAAGA 60.832 55.000 0.00 0.00 36.64 2.87
2373 3956 0.895530 TAGGACGGCAACTCCAGAAG 59.104 55.000 0.00 0.00 36.64 2.85
2374 3957 0.606604 GTAGGACGGCAACTCCAGAA 59.393 55.000 0.00 0.00 36.64 3.02
2377 3960 1.592400 CGAGTAGGACGGCAACTCCA 61.592 60.000 15.23 0.00 37.02 3.86
2378 3961 1.139095 CGAGTAGGACGGCAACTCC 59.861 63.158 15.23 0.00 37.02 3.85
2379 3962 1.516603 GCGAGTAGGACGGCAACTC 60.517 63.158 11.92 11.92 36.99 3.01
2387 4140 1.009900 CGACGATGGCGAGTAGGAC 60.010 63.158 0.00 0.00 41.64 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.