Multiple sequence alignment - TraesCS7A01G060300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G060300 chr7A 100.000 2648 0 0 1 2648 29666359 29663712 0.000000e+00 4891.0
1 TraesCS7A01G060300 chr7A 100.000 2223 0 0 3076 5298 29663284 29661062 0.000000e+00 4106.0
2 TraesCS7A01G060300 chr7A 89.651 1778 142 24 879 2648 4255131 4253388 0.000000e+00 2226.0
3 TraesCS7A01G060300 chr7A 85.394 1294 151 16 3083 4366 4253322 4252057 0.000000e+00 1308.0
4 TraesCS7A01G060300 chr7A 83.351 925 146 7 1692 2614 4329855 4328937 0.000000e+00 848.0
5 TraesCS7A01G060300 chr7A 75.946 661 149 8 3609 4261 4015214 4014556 1.100000e-86 331.0
6 TraesCS7A01G060300 chr7A 96.341 82 3 0 1277 1358 4016872 4016791 9.260000e-28 135.0
7 TraesCS7A01G060300 chr7A 90.000 100 10 0 1261 1360 4070358 4070259 4.310000e-26 130.0
8 TraesCS7A01G060300 chr7A 89.796 98 10 0 1261 1358 4625654 4625751 5.570000e-25 126.0
9 TraesCS7A01G060300 chr7D 98.242 2218 39 0 3076 5293 29404004 29401787 0.000000e+00 3880.0
10 TraesCS7A01G060300 chr7D 98.415 1767 25 1 874 2640 29405781 29404018 0.000000e+00 3105.0
11 TraesCS7A01G060300 chr7D 89.186 1794 138 30 866 2640 4426540 4424784 0.000000e+00 2187.0
12 TraesCS7A01G060300 chr7D 91.092 1291 100 12 3080 4366 4424761 4423482 0.000000e+00 1733.0
13 TraesCS7A01G060300 chr7D 89.273 867 63 14 4369 5230 4423446 4422605 0.000000e+00 1059.0
14 TraesCS7A01G060300 chr7D 83.191 940 150 7 1692 2629 4503409 4502476 0.000000e+00 854.0
15 TraesCS7A01G060300 chr7D 80.231 951 174 13 1692 2637 4291477 4290536 0.000000e+00 702.0
16 TraesCS7A01G060300 chr7D 86.408 515 60 9 356 863 581023509 581022998 5.990000e-154 555.0
17 TraesCS7A01G060300 chr7D 86.047 516 62 9 356 865 575750515 575750004 3.610000e-151 545.0
18 TraesCS7A01G060300 chr7D 81.555 656 109 9 3610 4256 4502166 4501514 1.010000e-146 531.0
19 TraesCS7A01G060300 chr7D 76.987 604 122 12 3619 4209 4648310 4647711 3.960000e-86 329.0
20 TraesCS7A01G060300 chr7D 74.422 649 150 11 3619 4256 4516350 4515707 1.130000e-66 265.0
21 TraesCS7A01G060300 chr7D 88.776 98 11 0 1261 1358 4793115 4793212 2.590000e-23 121.0
22 TraesCS7A01G060300 chr4A 90.106 1789 118 21 866 2636 739129209 739130956 0.000000e+00 2268.0
23 TraesCS7A01G060300 chr4A 90.994 1288 110 3 3080 4366 739130997 739132279 0.000000e+00 1731.0
24 TraesCS7A01G060300 chr4A 84.345 939 139 7 1692 2628 739079323 739080255 0.000000e+00 913.0
25 TraesCS7A01G060300 chr4A 80.974 862 157 6 1692 2551 739273622 739274478 0.000000e+00 676.0
26 TraesCS7A01G060300 chr4A 87.430 358 24 8 4876 5230 739132497 739132836 4.970000e-105 392.0
27 TraesCS7A01G060300 chr4A 76.683 609 125 12 3619 4214 738963820 738964424 6.620000e-84 322.0
28 TraesCS7A01G060300 chr4A 94.330 194 11 0 4364 4557 739132310 739132503 1.120000e-76 298.0
29 TraesCS7A01G060300 chr4A 89.796 98 10 0 1261 1358 738890283 738890186 5.570000e-25 126.0
30 TraesCS7A01G060300 chr7B 87.377 507 54 7 356 855 653802742 653802239 1.660000e-159 573.0
31 TraesCS7A01G060300 chr7B 86.914 512 62 4 356 863 286843897 286844407 2.140000e-158 569.0
32 TraesCS7A01G060300 chr3D 86.796 515 58 10 356 865 159574685 159575194 2.770000e-157 566.0
33 TraesCS7A01G060300 chr1D 87.298 496 57 5 356 848 327750760 327750268 3.580000e-156 562.0
34 TraesCS7A01G060300 chr1D 87.952 83 10 0 3439 3521 68403219 68403301 1.210000e-16 99.0
35 TraesCS7A01G060300 chr1D 87.952 83 10 0 3439 3521 254527107 254527189 1.210000e-16 99.0
36 TraesCS7A01G060300 chr1D 87.952 83 10 0 3439 3521 298349129 298349047 1.210000e-16 99.0
37 TraesCS7A01G060300 chr1D 86.364 88 12 0 3123 3210 422057575 422057488 4.370000e-16 97.1
38 TraesCS7A01G060300 chr1B 86.301 511 65 4 356 863 549990595 549990087 7.750000e-153 551.0
39 TraesCS7A01G060300 chr1B 85.798 514 58 12 356 863 322417995 322417491 1.010000e-146 531.0
40 TraesCS7A01G060300 chr5B 86.187 514 59 10 356 863 400552280 400551773 3.610000e-151 545.0
41 TraesCS7A01G060300 chr5B 81.507 146 21 4 3123 3263 476927806 476927662 1.210000e-21 115.0
42 TraesCS7A01G060300 chr6B 94.366 355 19 1 1 354 134005194 134004840 1.300000e-150 544.0
43 TraesCS7A01G060300 chr6B 83.333 72 10 2 3140 3210 71299745 71299815 1.230000e-06 65.8
44 TraesCS7A01G060300 chr3B 82.394 142 23 2 3123 3262 135687455 135687314 7.210000e-24 122.0
45 TraesCS7A01G060300 chr5D 89.157 83 9 0 3439 3521 432337103 432337185 2.610000e-18 104.0
46 TraesCS7A01G060300 chr2A 89.157 83 9 0 3439 3521 726904954 726904872 2.610000e-18 104.0
47 TraesCS7A01G060300 chr4B 83.962 106 16 1 3157 3262 510849135 510849239 3.380000e-17 100.0
48 TraesCS7A01G060300 chr4D 87.952 83 10 0 3439 3521 329124571 329124653 1.210000e-16 99.0
49 TraesCS7A01G060300 chr2D 80.435 92 17 1 3162 3253 14800262 14800352 9.520000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G060300 chr7A 29661062 29666359 5297 True 4498.500000 4891 100.000000 1 5298 2 chr7A.!!$R5 5297
1 TraesCS7A01G060300 chr7A 4252057 4255131 3074 True 1767.000000 2226 87.522500 879 4366 2 chr7A.!!$R4 3487
2 TraesCS7A01G060300 chr7A 4328937 4329855 918 True 848.000000 848 83.351000 1692 2614 1 chr7A.!!$R2 922
3 TraesCS7A01G060300 chr7A 4014556 4016872 2316 True 233.000000 331 86.143500 1277 4261 2 chr7A.!!$R3 2984
4 TraesCS7A01G060300 chr7D 29401787 29405781 3994 True 3492.500000 3880 98.328500 874 5293 2 chr7D.!!$R8 4419
5 TraesCS7A01G060300 chr7D 4422605 4426540 3935 True 1659.666667 2187 89.850333 866 5230 3 chr7D.!!$R6 4364
6 TraesCS7A01G060300 chr7D 4290536 4291477 941 True 702.000000 702 80.231000 1692 2637 1 chr7D.!!$R1 945
7 TraesCS7A01G060300 chr7D 4501514 4503409 1895 True 692.500000 854 82.373000 1692 4256 2 chr7D.!!$R7 2564
8 TraesCS7A01G060300 chr7D 581022998 581023509 511 True 555.000000 555 86.408000 356 863 1 chr7D.!!$R5 507
9 TraesCS7A01G060300 chr7D 575750004 575750515 511 True 545.000000 545 86.047000 356 865 1 chr7D.!!$R4 509
10 TraesCS7A01G060300 chr7D 4647711 4648310 599 True 329.000000 329 76.987000 3619 4209 1 chr7D.!!$R3 590
11 TraesCS7A01G060300 chr7D 4515707 4516350 643 True 265.000000 265 74.422000 3619 4256 1 chr7D.!!$R2 637
12 TraesCS7A01G060300 chr4A 739129209 739132836 3627 False 1172.250000 2268 90.715000 866 5230 4 chr4A.!!$F4 4364
13 TraesCS7A01G060300 chr4A 739079323 739080255 932 False 913.000000 913 84.345000 1692 2628 1 chr4A.!!$F2 936
14 TraesCS7A01G060300 chr4A 739273622 739274478 856 False 676.000000 676 80.974000 1692 2551 1 chr4A.!!$F3 859
15 TraesCS7A01G060300 chr4A 738963820 738964424 604 False 322.000000 322 76.683000 3619 4214 1 chr4A.!!$F1 595
16 TraesCS7A01G060300 chr7B 653802239 653802742 503 True 573.000000 573 87.377000 356 855 1 chr7B.!!$R1 499
17 TraesCS7A01G060300 chr7B 286843897 286844407 510 False 569.000000 569 86.914000 356 863 1 chr7B.!!$F1 507
18 TraesCS7A01G060300 chr3D 159574685 159575194 509 False 566.000000 566 86.796000 356 865 1 chr3D.!!$F1 509
19 TraesCS7A01G060300 chr1B 549990087 549990595 508 True 551.000000 551 86.301000 356 863 1 chr1B.!!$R2 507
20 TraesCS7A01G060300 chr1B 322417491 322417995 504 True 531.000000 531 85.798000 356 863 1 chr1B.!!$R1 507
21 TraesCS7A01G060300 chr5B 400551773 400552280 507 True 545.000000 545 86.187000 356 863 1 chr5B.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.036765 CGATTGGTTTGGGTCCTCGA 60.037 55.000 0.00 0.0 0.00 4.04 F
265 266 0.037975 CTGTTTGCATCAGTTGGGCC 60.038 55.000 0.00 0.0 0.00 5.80 F
824 838 0.182299 TGGGCGTTGATCCATGCATA 59.818 50.000 12.62 0.0 0.00 3.14 F
826 840 2.039613 TGGGCGTTGATCCATGCATATA 59.960 45.455 12.62 0.0 0.00 0.86 F
2281 2663 2.223433 GGCAATAGCAACTCATCACTGC 60.223 50.000 0.00 0.0 44.61 4.40 F
3481 3905 1.140452 TCCATGAGCAGGCAAGAGATC 59.860 52.381 0.00 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 1532 2.475353 CCGCCAAGCAAACAAACAAAAC 60.475 45.455 0.00 0.0 0.00 2.43 R
2279 2661 1.000506 GGACGTACAACTCTTCCTGCA 59.999 52.381 0.00 0.0 0.00 4.41 R
2280 2662 1.272769 AGGACGTACAACTCTTCCTGC 59.727 52.381 0.00 0.0 35.28 4.85 R
2387 2769 2.103094 CCGATTCCCACATCTGCTTCTA 59.897 50.000 0.00 0.0 0.00 2.10 R
3797 4227 2.771089 GATGTCAGAAGTGTTGAGGCA 58.229 47.619 0.00 0.0 0.00 4.75 R
4439 4914 0.179108 GGGATGGACTCGTGTACTGC 60.179 60.000 0.93 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.759893 GAGGTAGTCCTGACCGGT 57.240 61.111 6.92 6.92 45.24 5.28
18 19 2.190756 GAGGTAGTCCTGACCGGTG 58.809 63.158 14.63 0.00 45.24 4.94
19 20 1.305046 AGGTAGTCCTGACCGGTGG 60.305 63.158 14.63 8.62 43.33 4.61
20 21 2.577593 GTAGTCCTGACCGGTGGC 59.422 66.667 14.63 0.00 0.00 5.01
21 22 2.118732 TAGTCCTGACCGGTGGCA 59.881 61.111 14.63 3.10 0.00 4.92
22 23 2.280552 TAGTCCTGACCGGTGGCAC 61.281 63.158 14.63 9.70 0.00 5.01
23 24 3.936203 GTCCTGACCGGTGGCACA 61.936 66.667 14.63 1.70 0.00 4.57
24 25 3.164977 TCCTGACCGGTGGCACAA 61.165 61.111 14.63 0.00 44.16 3.33
25 26 2.669569 CCTGACCGGTGGCACAAG 60.670 66.667 14.63 12.20 44.16 3.16
26 27 2.425592 CTGACCGGTGGCACAAGA 59.574 61.111 14.63 0.00 44.16 3.02
27 28 1.227823 CTGACCGGTGGCACAAGAA 60.228 57.895 14.63 0.00 44.16 2.52
28 29 1.227823 TGACCGGTGGCACAAGAAG 60.228 57.895 14.63 5.07 44.16 2.85
29 30 1.966451 GACCGGTGGCACAAGAAGG 60.966 63.158 14.63 15.39 44.16 3.46
30 31 2.391724 GACCGGTGGCACAAGAAGGA 62.392 60.000 14.63 0.00 44.16 3.36
31 32 1.672356 CCGGTGGCACAAGAAGGAG 60.672 63.158 20.82 0.00 44.16 3.69
32 33 2.328099 CGGTGGCACAAGAAGGAGC 61.328 63.158 20.82 0.00 44.16 4.70
33 34 1.073897 GGTGGCACAAGAAGGAGCT 59.926 57.895 20.82 0.00 44.16 4.09
34 35 0.957888 GGTGGCACAAGAAGGAGCTC 60.958 60.000 20.82 4.71 44.16 4.09
35 36 0.957888 GTGGCACAAGAAGGAGCTCC 60.958 60.000 26.22 26.22 44.16 4.70
36 37 1.377856 GGCACAAGAAGGAGCTCCC 60.378 63.158 29.54 15.08 36.42 4.30
37 38 1.743252 GCACAAGAAGGAGCTCCCG 60.743 63.158 29.54 14.76 40.87 5.14
38 39 1.975327 CACAAGAAGGAGCTCCCGA 59.025 57.895 29.54 0.00 40.87 5.14
39 40 0.390472 CACAAGAAGGAGCTCCCGAC 60.390 60.000 29.54 19.51 40.87 4.79
40 41 1.153745 CAAGAAGGAGCTCCCGACG 60.154 63.158 29.54 10.64 40.87 5.12
41 42 2.352032 AAGAAGGAGCTCCCGACGG 61.352 63.158 29.54 6.99 40.87 4.79
42 43 4.516195 GAAGGAGCTCCCGACGGC 62.516 72.222 29.54 8.62 40.87 5.68
60 61 3.747976 GGCGGCAGCGATTGGTTT 61.748 61.111 3.07 0.00 46.35 3.27
61 62 2.504681 GCGGCAGCGATTGGTTTG 60.505 61.111 0.00 0.00 0.00 2.93
62 63 2.179018 CGGCAGCGATTGGTTTGG 59.821 61.111 0.00 0.00 0.00 3.28
63 64 2.573340 GGCAGCGATTGGTTTGGG 59.427 61.111 0.00 0.00 0.00 4.12
64 65 2.275380 GGCAGCGATTGGTTTGGGT 61.275 57.895 0.00 0.00 0.00 4.51
65 66 1.212751 GCAGCGATTGGTTTGGGTC 59.787 57.895 0.00 0.00 0.00 4.46
66 67 1.883021 CAGCGATTGGTTTGGGTCC 59.117 57.895 0.00 0.00 0.00 4.46
67 68 0.609131 CAGCGATTGGTTTGGGTCCT 60.609 55.000 0.00 0.00 0.00 3.85
68 69 0.322546 AGCGATTGGTTTGGGTCCTC 60.323 55.000 0.00 0.00 0.00 3.71
69 70 1.644786 GCGATTGGTTTGGGTCCTCG 61.645 60.000 0.00 0.00 0.00 4.63
70 71 0.036765 CGATTGGTTTGGGTCCTCGA 60.037 55.000 0.00 0.00 0.00 4.04
71 72 1.406887 CGATTGGTTTGGGTCCTCGAT 60.407 52.381 0.00 0.00 0.00 3.59
72 73 2.289565 GATTGGTTTGGGTCCTCGATC 58.710 52.381 0.00 0.00 0.00 3.69
73 74 1.358152 TTGGTTTGGGTCCTCGATCT 58.642 50.000 0.00 0.00 0.00 2.75
74 75 0.613260 TGGTTTGGGTCCTCGATCTG 59.387 55.000 0.00 0.00 0.00 2.90
75 76 0.902531 GGTTTGGGTCCTCGATCTGA 59.097 55.000 0.00 0.00 0.00 3.27
76 77 1.486726 GGTTTGGGTCCTCGATCTGAT 59.513 52.381 0.00 0.00 0.00 2.90
77 78 2.483889 GGTTTGGGTCCTCGATCTGATC 60.484 54.545 7.60 7.60 0.00 2.92
78 79 2.432510 GTTTGGGTCCTCGATCTGATCT 59.567 50.000 15.16 0.00 0.00 2.75
79 80 1.697284 TGGGTCCTCGATCTGATCTG 58.303 55.000 15.16 9.09 0.00 2.90
80 81 1.215423 TGGGTCCTCGATCTGATCTGA 59.785 52.381 15.16 12.38 0.00 3.27
81 82 1.885887 GGGTCCTCGATCTGATCTGAG 59.114 57.143 21.77 21.77 33.10 3.35
82 83 2.488167 GGGTCCTCGATCTGATCTGAGA 60.488 54.545 26.39 14.59 34.28 3.27
83 84 2.813754 GGTCCTCGATCTGATCTGAGAG 59.186 54.545 26.39 19.72 34.28 3.20
84 85 2.813754 GTCCTCGATCTGATCTGAGAGG 59.186 54.545 26.39 24.96 44.75 3.69
85 86 3.138884 CCTCGATCTGATCTGAGAGGA 57.861 52.381 24.38 12.91 45.88 3.71
86 87 3.076621 CCTCGATCTGATCTGAGAGGAG 58.923 54.545 24.38 18.85 45.88 3.69
87 88 3.244526 CCTCGATCTGATCTGAGAGGAGA 60.245 52.174 24.38 9.64 45.88 3.71
88 89 4.566278 CCTCGATCTGATCTGAGAGGAGAT 60.566 50.000 24.38 9.74 45.88 2.75
89 90 4.325972 TCGATCTGATCTGAGAGGAGATG 58.674 47.826 15.16 4.59 32.57 2.90
90 91 4.041444 TCGATCTGATCTGAGAGGAGATGA 59.959 45.833 15.16 6.29 32.57 2.92
91 92 4.761227 CGATCTGATCTGAGAGGAGATGAA 59.239 45.833 15.16 0.00 32.57 2.57
92 93 5.241285 CGATCTGATCTGAGAGGAGATGAAA 59.759 44.000 15.16 0.00 32.57 2.69
93 94 6.569035 CGATCTGATCTGAGAGGAGATGAAAG 60.569 46.154 15.16 0.00 32.57 2.62
94 95 5.764432 TCTGATCTGAGAGGAGATGAAAGA 58.236 41.667 0.00 0.00 32.57 2.52
95 96 5.829391 TCTGATCTGAGAGGAGATGAAAGAG 59.171 44.000 0.00 0.00 32.57 2.85
96 97 5.764432 TGATCTGAGAGGAGATGAAAGAGA 58.236 41.667 0.00 0.00 32.57 3.10
97 98 5.829391 TGATCTGAGAGGAGATGAAAGAGAG 59.171 44.000 0.00 0.00 32.57 3.20
98 99 5.191727 TCTGAGAGGAGATGAAAGAGAGT 57.808 43.478 0.00 0.00 0.00 3.24
99 100 5.579047 TCTGAGAGGAGATGAAAGAGAGTT 58.421 41.667 0.00 0.00 0.00 3.01
100 101 5.418524 TCTGAGAGGAGATGAAAGAGAGTTG 59.581 44.000 0.00 0.00 0.00 3.16
101 102 4.081752 TGAGAGGAGATGAAAGAGAGTTGC 60.082 45.833 0.00 0.00 0.00 4.17
102 103 3.119173 AGAGGAGATGAAAGAGAGTTGCG 60.119 47.826 0.00 0.00 0.00 4.85
103 104 2.093764 AGGAGATGAAAGAGAGTTGCGG 60.094 50.000 0.00 0.00 0.00 5.69
104 105 2.354203 GGAGATGAAAGAGAGTTGCGGT 60.354 50.000 0.00 0.00 0.00 5.68
105 106 2.670414 GAGATGAAAGAGAGTTGCGGTG 59.330 50.000 0.00 0.00 0.00 4.94
106 107 1.734465 GATGAAAGAGAGTTGCGGTGG 59.266 52.381 0.00 0.00 0.00 4.61
107 108 0.884704 TGAAAGAGAGTTGCGGTGGC 60.885 55.000 0.00 0.00 40.52 5.01
116 117 3.926003 TGCGGTGGCACTTTTGAA 58.074 50.000 18.45 0.00 46.21 2.69
117 118 1.732917 TGCGGTGGCACTTTTGAAG 59.267 52.632 18.45 2.10 46.21 3.02
118 119 1.034838 TGCGGTGGCACTTTTGAAGT 61.035 50.000 18.45 0.00 46.21 3.01
119 120 0.948678 GCGGTGGCACTTTTGAAGTA 59.051 50.000 18.45 0.00 40.46 2.24
120 121 1.335496 GCGGTGGCACTTTTGAAGTAA 59.665 47.619 18.45 0.00 40.46 2.24
121 122 2.030274 GCGGTGGCACTTTTGAAGTAAT 60.030 45.455 18.45 0.00 40.46 1.89
122 123 3.552068 GCGGTGGCACTTTTGAAGTAATT 60.552 43.478 18.45 0.00 40.46 1.40
123 124 4.226761 CGGTGGCACTTTTGAAGTAATTC 58.773 43.478 18.45 0.00 40.46 2.17
124 125 4.023193 CGGTGGCACTTTTGAAGTAATTCT 60.023 41.667 18.45 0.00 40.46 2.40
125 126 5.222631 GGTGGCACTTTTGAAGTAATTCTG 58.777 41.667 18.45 0.00 40.46 3.02
126 127 5.222631 GTGGCACTTTTGAAGTAATTCTGG 58.777 41.667 11.13 0.00 40.46 3.86
127 128 4.892934 TGGCACTTTTGAAGTAATTCTGGT 59.107 37.500 4.35 0.00 40.46 4.00
128 129 6.016610 GTGGCACTTTTGAAGTAATTCTGGTA 60.017 38.462 11.13 0.00 40.46 3.25
129 130 6.547880 TGGCACTTTTGAAGTAATTCTGGTAA 59.452 34.615 4.35 0.00 40.46 2.85
130 131 7.068839 TGGCACTTTTGAAGTAATTCTGGTAAA 59.931 33.333 4.35 0.00 40.46 2.01
131 132 8.088365 GGCACTTTTGAAGTAATTCTGGTAAAT 58.912 33.333 4.35 0.00 40.46 1.40
138 139 9.627123 TTGAAGTAATTCTGGTAAATATCAGGG 57.373 33.333 4.35 0.00 35.17 4.45
139 140 7.719633 TGAAGTAATTCTGGTAAATATCAGGGC 59.280 37.037 4.35 0.00 35.17 5.19
140 141 6.543735 AGTAATTCTGGTAAATATCAGGGCC 58.456 40.000 0.00 0.00 35.17 5.80
141 142 5.669798 AATTCTGGTAAATATCAGGGCCT 57.330 39.130 0.00 0.00 35.17 5.19
142 143 6.780198 AATTCTGGTAAATATCAGGGCCTA 57.220 37.500 5.28 0.00 35.17 3.93
143 144 6.977244 ATTCTGGTAAATATCAGGGCCTAT 57.023 37.500 5.28 3.09 35.17 2.57
144 145 6.374417 TTCTGGTAAATATCAGGGCCTATC 57.626 41.667 5.28 0.00 35.17 2.08
145 146 4.783227 TCTGGTAAATATCAGGGCCTATCC 59.217 45.833 5.28 0.77 35.17 2.59
146 147 3.517901 TGGTAAATATCAGGGCCTATCCG 59.482 47.826 5.28 0.00 34.94 4.18
147 148 3.518303 GGTAAATATCAGGGCCTATCCGT 59.482 47.826 5.28 0.00 34.94 4.69
152 153 1.746517 CAGGGCCTATCCGTGTACC 59.253 63.158 5.28 0.00 43.81 3.34
153 154 1.831286 AGGGCCTATCCGTGTACCG 60.831 63.158 2.82 0.00 34.94 4.02
165 166 3.422890 CGTGTACCGGTTCGTTTTAAG 57.577 47.619 15.04 0.00 0.00 1.85
166 167 2.794350 CGTGTACCGGTTCGTTTTAAGT 59.206 45.455 15.04 0.00 0.00 2.24
167 168 3.361917 CGTGTACCGGTTCGTTTTAAGTG 60.362 47.826 15.04 0.00 0.00 3.16
168 169 3.059665 GTGTACCGGTTCGTTTTAAGTGG 60.060 47.826 15.04 0.00 0.00 4.00
169 170 2.618442 ACCGGTTCGTTTTAAGTGGA 57.382 45.000 0.00 0.00 0.00 4.02
170 171 2.916640 ACCGGTTCGTTTTAAGTGGAA 58.083 42.857 0.00 0.00 0.00 3.53
171 172 2.874086 ACCGGTTCGTTTTAAGTGGAAG 59.126 45.455 0.00 0.00 0.00 3.46
172 173 2.350102 CCGGTTCGTTTTAAGTGGAAGC 60.350 50.000 0.00 0.00 34.51 3.86
173 174 2.912366 GGTTCGTTTTAAGTGGAAGCG 58.088 47.619 0.00 0.00 32.96 4.68
174 175 2.304413 GTTCGTTTTAAGTGGAAGCGC 58.696 47.619 0.00 0.00 31.96 5.92
175 176 0.509499 TCGTTTTAAGTGGAAGCGCG 59.491 50.000 0.00 0.00 31.96 6.86
176 177 0.452122 CGTTTTAAGTGGAAGCGCGG 60.452 55.000 8.83 0.00 0.00 6.46
177 178 0.109919 GTTTTAAGTGGAAGCGCGGG 60.110 55.000 8.83 0.00 0.00 6.13
178 179 0.535553 TTTTAAGTGGAAGCGCGGGT 60.536 50.000 8.83 0.00 0.00 5.28
179 180 1.231958 TTTAAGTGGAAGCGCGGGTG 61.232 55.000 8.83 0.00 0.00 4.61
209 210 2.434185 TGCATCGCAGGAACGTCC 60.434 61.111 0.00 0.00 36.58 4.79
210 211 3.554692 GCATCGCAGGAACGTCCG 61.555 66.667 0.00 0.00 42.75 4.79
211 212 2.180769 CATCGCAGGAACGTCCGA 59.819 61.111 0.00 0.00 42.75 4.55
212 213 1.226974 CATCGCAGGAACGTCCGAT 60.227 57.895 0.00 0.00 42.75 4.18
213 214 0.806102 CATCGCAGGAACGTCCGATT 60.806 55.000 0.00 0.00 42.75 3.34
214 215 0.527817 ATCGCAGGAACGTCCGATTC 60.528 55.000 0.00 0.00 42.75 2.52
215 216 2.165301 CGCAGGAACGTCCGATTCC 61.165 63.158 10.88 10.88 45.23 3.01
218 219 3.795638 GGAACGTCCGATTCCTGC 58.204 61.111 11.32 0.00 42.15 4.85
219 220 1.079405 GGAACGTCCGATTCCTGCA 60.079 57.895 11.32 0.00 42.15 4.41
220 221 0.462047 GGAACGTCCGATTCCTGCAT 60.462 55.000 11.32 0.00 42.15 3.96
221 222 1.369625 GAACGTCCGATTCCTGCATT 58.630 50.000 0.00 0.00 0.00 3.56
222 223 1.327764 GAACGTCCGATTCCTGCATTC 59.672 52.381 0.00 0.00 0.00 2.67
223 224 0.462047 ACGTCCGATTCCTGCATTCC 60.462 55.000 0.00 0.00 0.00 3.01
224 225 0.179073 CGTCCGATTCCTGCATTCCT 60.179 55.000 0.00 0.00 0.00 3.36
225 226 1.587547 GTCCGATTCCTGCATTCCTC 58.412 55.000 0.00 0.00 0.00 3.71
226 227 1.139853 GTCCGATTCCTGCATTCCTCT 59.860 52.381 0.00 0.00 0.00 3.69
227 228 1.414181 TCCGATTCCTGCATTCCTCTC 59.586 52.381 0.00 0.00 0.00 3.20
228 229 1.139654 CCGATTCCTGCATTCCTCTCA 59.860 52.381 0.00 0.00 0.00 3.27
229 230 2.481854 CGATTCCTGCATTCCTCTCAG 58.518 52.381 0.00 0.00 0.00 3.35
230 231 2.220313 GATTCCTGCATTCCTCTCAGC 58.780 52.381 0.00 0.00 0.00 4.26
231 232 0.254178 TTCCTGCATTCCTCTCAGCC 59.746 55.000 0.00 0.00 0.00 4.85
232 233 0.619832 TCCTGCATTCCTCTCAGCCT 60.620 55.000 0.00 0.00 0.00 4.58
233 234 0.464013 CCTGCATTCCTCTCAGCCTG 60.464 60.000 0.00 0.00 0.00 4.85
234 235 0.464013 CTGCATTCCTCTCAGCCTGG 60.464 60.000 0.00 0.00 0.00 4.45
235 236 1.823041 GCATTCCTCTCAGCCTGGC 60.823 63.158 11.65 11.65 0.00 4.85
236 237 1.913722 CATTCCTCTCAGCCTGGCT 59.086 57.895 17.22 17.22 40.77 4.75
251 252 2.032681 GCTGACGGGCCTCTGTTT 59.967 61.111 0.84 0.00 31.54 2.83
252 253 2.328099 GCTGACGGGCCTCTGTTTG 61.328 63.158 0.84 0.00 31.54 2.93
253 254 2.281484 TGACGGGCCTCTGTTTGC 60.281 61.111 0.84 0.00 31.54 3.68
254 255 2.281484 GACGGGCCTCTGTTTGCA 60.281 61.111 0.84 0.00 31.54 4.08
255 256 1.675641 GACGGGCCTCTGTTTGCAT 60.676 57.895 0.84 0.00 31.54 3.96
256 257 1.648467 GACGGGCCTCTGTTTGCATC 61.648 60.000 0.84 0.00 31.54 3.91
257 258 1.675310 CGGGCCTCTGTTTGCATCA 60.675 57.895 0.84 0.00 0.00 3.07
258 259 1.651240 CGGGCCTCTGTTTGCATCAG 61.651 60.000 0.84 11.62 0.00 2.90
259 260 0.610232 GGGCCTCTGTTTGCATCAGT 60.610 55.000 0.84 0.00 34.86 3.41
260 261 1.251251 GGCCTCTGTTTGCATCAGTT 58.749 50.000 15.67 0.00 34.86 3.16
261 262 1.068055 GGCCTCTGTTTGCATCAGTTG 60.068 52.381 15.67 10.73 34.86 3.16
262 263 1.068055 GCCTCTGTTTGCATCAGTTGG 60.068 52.381 15.67 17.44 34.86 3.77
263 264 1.542915 CCTCTGTTTGCATCAGTTGGG 59.457 52.381 15.67 12.96 34.86 4.12
264 265 0.961019 TCTGTTTGCATCAGTTGGGC 59.039 50.000 15.67 0.00 34.86 5.36
265 266 0.037975 CTGTTTGCATCAGTTGGGCC 60.038 55.000 0.00 0.00 0.00 5.80
266 267 0.758310 TGTTTGCATCAGTTGGGCCA 60.758 50.000 0.00 0.00 0.00 5.36
267 268 0.037975 GTTTGCATCAGTTGGGCCAG 60.038 55.000 6.23 0.00 0.00 4.85
268 269 1.186917 TTTGCATCAGTTGGGCCAGG 61.187 55.000 6.23 0.32 0.00 4.45
269 270 3.455469 GCATCAGTTGGGCCAGGC 61.455 66.667 6.23 1.26 0.00 4.85
270 271 2.357836 CATCAGTTGGGCCAGGCT 59.642 61.111 12.43 6.60 0.00 4.58
271 272 2.050350 CATCAGTTGGGCCAGGCTG 61.050 63.158 25.12 25.12 0.00 4.85
272 273 2.233566 ATCAGTTGGGCCAGGCTGA 61.234 57.895 31.14 31.14 41.43 4.26
273 274 2.207501 ATCAGTTGGGCCAGGCTGAG 62.208 60.000 31.71 15.64 40.67 3.35
274 275 3.655211 AGTTGGGCCAGGCTGAGG 61.655 66.667 17.94 0.17 0.00 3.86
275 276 3.650950 GTTGGGCCAGGCTGAGGA 61.651 66.667 17.94 0.00 0.00 3.71
276 277 3.333219 TTGGGCCAGGCTGAGGAG 61.333 66.667 17.94 0.00 0.00 3.69
285 286 2.046507 GCTGAGGAGGCCACACAG 60.047 66.667 16.77 16.77 0.00 3.66
286 287 2.667418 CTGAGGAGGCCACACAGG 59.333 66.667 5.01 0.00 41.84 4.00
287 288 1.915266 CTGAGGAGGCCACACAGGA 60.915 63.158 5.01 0.00 41.22 3.86
294 295 4.251246 GCCACACAGGACACCAAA 57.749 55.556 0.00 0.00 41.22 3.28
295 296 1.733526 GCCACACAGGACACCAAAC 59.266 57.895 0.00 0.00 41.22 2.93
296 297 1.034838 GCCACACAGGACACCAAACA 61.035 55.000 0.00 0.00 41.22 2.83
297 298 1.024271 CCACACAGGACACCAAACAG 58.976 55.000 0.00 0.00 41.22 3.16
298 299 1.024271 CACACAGGACACCAAACAGG 58.976 55.000 0.00 0.00 45.67 4.00
299 300 0.751643 ACACAGGACACCAAACAGGC 60.752 55.000 0.00 0.00 43.14 4.85
300 301 1.152756 ACAGGACACCAAACAGGCC 60.153 57.895 0.00 0.00 43.14 5.19
301 302 1.152777 CAGGACACCAAACAGGCCA 60.153 57.895 5.01 0.00 43.14 5.36
302 303 1.151450 AGGACACCAAACAGGCCAG 59.849 57.895 5.01 0.00 43.14 4.85
303 304 1.150536 GGACACCAAACAGGCCAGA 59.849 57.895 5.01 0.00 43.14 3.86
304 305 0.251341 GGACACCAAACAGGCCAGAT 60.251 55.000 5.01 0.00 43.14 2.90
305 306 1.620822 GACACCAAACAGGCCAGATT 58.379 50.000 5.01 0.00 43.14 2.40
306 307 2.554344 GGACACCAAACAGGCCAGATTA 60.554 50.000 5.01 0.00 43.14 1.75
307 308 3.356290 GACACCAAACAGGCCAGATTAT 58.644 45.455 5.01 0.00 43.14 1.28
308 309 3.091545 ACACCAAACAGGCCAGATTATG 58.908 45.455 5.01 2.80 43.14 1.90
309 310 2.102578 ACCAAACAGGCCAGATTATGC 58.897 47.619 5.01 0.00 43.14 3.14
310 311 2.101783 CCAAACAGGCCAGATTATGCA 58.898 47.619 5.01 0.00 0.00 3.96
311 312 2.696707 CCAAACAGGCCAGATTATGCAT 59.303 45.455 5.01 3.79 0.00 3.96
312 313 3.491964 CCAAACAGGCCAGATTATGCATG 60.492 47.826 10.16 0.00 44.27 4.06
313 314 2.742428 ACAGGCCAGATTATGCATGT 57.258 45.000 10.16 0.00 46.43 3.21
315 316 2.304092 CAGGCCAGATTATGCATGTGT 58.696 47.619 10.16 0.00 34.78 3.72
316 317 2.034179 CAGGCCAGATTATGCATGTGTG 59.966 50.000 10.16 6.76 34.78 3.82
317 318 1.338973 GGCCAGATTATGCATGTGTGG 59.661 52.381 19.56 19.56 0.00 4.17
318 319 2.026641 GCCAGATTATGCATGTGTGGT 58.973 47.619 22.58 0.00 0.00 4.16
319 320 2.223641 GCCAGATTATGCATGTGTGGTG 60.224 50.000 22.58 9.22 0.00 4.17
320 321 2.223641 CCAGATTATGCATGTGTGGTGC 60.224 50.000 10.16 0.00 42.81 5.01
321 322 1.672363 AGATTATGCATGTGTGGTGCG 59.328 47.619 10.16 0.00 45.37 5.34
322 323 1.670295 GATTATGCATGTGTGGTGCGA 59.330 47.619 10.16 0.00 45.37 5.10
323 324 1.748950 TTATGCATGTGTGGTGCGAT 58.251 45.000 10.16 0.00 45.37 4.58
324 325 1.015868 TATGCATGTGTGGTGCGATG 58.984 50.000 10.16 0.00 45.37 3.84
325 326 2.202518 GCATGTGTGGTGCGATGC 60.203 61.111 0.00 0.00 34.86 3.91
326 327 2.980378 GCATGTGTGGTGCGATGCA 61.980 57.895 0.00 0.00 40.78 3.96
327 328 1.135939 CATGTGTGGTGCGATGCAG 59.864 57.895 0.00 0.00 40.08 4.41
328 329 2.042259 ATGTGTGGTGCGATGCAGG 61.042 57.895 0.00 0.00 40.08 4.85
329 330 2.669569 GTGTGGTGCGATGCAGGT 60.670 61.111 0.00 0.00 40.08 4.00
330 331 2.669229 TGTGGTGCGATGCAGGTG 60.669 61.111 0.00 0.00 40.08 4.00
331 332 4.107051 GTGGTGCGATGCAGGTGC 62.107 66.667 0.00 0.00 40.08 5.01
334 335 3.857854 GTGCGATGCAGGTGCGAG 61.858 66.667 0.00 0.00 45.83 5.03
338 339 4.819761 GATGCAGGTGCGAGCCGA 62.820 66.667 0.00 0.00 45.83 5.54
342 343 2.664851 CAGGTGCGAGCCGACAAA 60.665 61.111 0.00 0.00 0.00 2.83
343 344 2.665185 AGGTGCGAGCCGACAAAC 60.665 61.111 0.00 0.00 0.00 2.93
344 345 3.723348 GGTGCGAGCCGACAAACC 61.723 66.667 0.00 0.00 0.00 3.27
345 346 2.970324 GTGCGAGCCGACAAACCA 60.970 61.111 0.00 0.00 0.00 3.67
346 347 2.203084 TGCGAGCCGACAAACCAA 60.203 55.556 0.00 0.00 0.00 3.67
347 348 1.820056 TGCGAGCCGACAAACCAAA 60.820 52.632 0.00 0.00 0.00 3.28
348 349 1.370051 GCGAGCCGACAAACCAAAC 60.370 57.895 0.00 0.00 0.00 2.93
349 350 2.018544 CGAGCCGACAAACCAAACA 58.981 52.632 0.00 0.00 0.00 2.83
350 351 0.316689 CGAGCCGACAAACCAAACAC 60.317 55.000 0.00 0.00 0.00 3.32
351 352 0.316689 GAGCCGACAAACCAAACACG 60.317 55.000 0.00 0.00 0.00 4.49
352 353 1.942223 GCCGACAAACCAAACACGC 60.942 57.895 0.00 0.00 0.00 5.34
353 354 1.298788 CCGACAAACCAAACACGCC 60.299 57.895 0.00 0.00 0.00 5.68
354 355 1.720694 CCGACAAACCAAACACGCCT 61.721 55.000 0.00 0.00 0.00 5.52
378 381 1.472480 GCAACTGACAACTTGGTGTGT 59.528 47.619 0.00 0.00 0.00 3.72
399 402 4.988716 AGGAGACGGGCGTGTGGA 62.989 66.667 0.00 0.00 0.00 4.02
579 588 1.604604 GCAACTGACAGCTTTGGGTA 58.395 50.000 1.25 0.00 0.00 3.69
595 604 1.411216 GGGTATGGGAGAGAAGACGGA 60.411 57.143 0.00 0.00 0.00 4.69
641 650 3.390521 CACCAGCCCCTCTGCGTA 61.391 66.667 0.00 0.00 41.50 4.42
643 653 3.390521 CCAGCCCCTCTGCGTACA 61.391 66.667 0.00 0.00 41.50 2.90
651 662 1.737793 CCCTCTGCGTACATGAAAACC 59.262 52.381 0.00 0.00 0.00 3.27
653 664 2.333926 CTCTGCGTACATGAAAACCGA 58.666 47.619 0.00 0.00 0.00 4.69
682 693 1.165270 GAACTGCTAAACGCCCACAT 58.835 50.000 0.00 0.00 38.05 3.21
684 695 2.710096 ACTGCTAAACGCCCACATAT 57.290 45.000 0.00 0.00 38.05 1.78
695 706 0.846015 CCCACATATCAGCCCCTTCA 59.154 55.000 0.00 0.00 0.00 3.02
699 711 2.102420 CACATATCAGCCCCTTCACGTA 59.898 50.000 0.00 0.00 0.00 3.57
743 755 0.604243 GACGTATGCCCACACACCAA 60.604 55.000 0.00 0.00 0.00 3.67
751 763 1.056660 CCCACACACCAACCTAGTCT 58.943 55.000 0.00 0.00 0.00 3.24
757 769 5.046878 CCACACACCAACCTAGTCTTATGTA 60.047 44.000 0.00 0.00 0.00 2.29
761 773 5.425539 ACACCAACCTAGTCTTATGTAGCAT 59.574 40.000 0.00 0.00 0.00 3.79
799 813 7.879160 ACAAAACATACCAAGATTCATGCAAAT 59.121 29.630 0.00 0.00 0.00 2.32
805 819 9.537192 CATACCAAGATTCATGCAAATACAAAT 57.463 29.630 0.00 0.00 0.00 2.32
808 822 6.259167 CCAAGATTCATGCAAATACAAATGGG 59.741 38.462 0.00 0.00 0.00 4.00
824 838 0.182299 TGGGCGTTGATCCATGCATA 59.818 50.000 12.62 0.00 0.00 3.14
826 840 2.039613 TGGGCGTTGATCCATGCATATA 59.960 45.455 12.62 0.00 0.00 0.86
834 848 5.573337 TGATCCATGCATATAGACGAGAG 57.427 43.478 0.00 0.00 0.00 3.20
1460 1509 3.823304 GAGGAAGAAACTGACTGGCAATT 59.177 43.478 0.00 0.00 0.00 2.32
2279 2661 2.648059 GGGCAATAGCAACTCATCACT 58.352 47.619 0.00 0.00 44.61 3.41
2280 2662 2.357009 GGGCAATAGCAACTCATCACTG 59.643 50.000 0.00 0.00 44.61 3.66
2281 2663 2.223433 GGCAATAGCAACTCATCACTGC 60.223 50.000 0.00 0.00 44.61 4.40
2387 2769 2.607750 ATGGACACCGCTGGACCT 60.608 61.111 1.50 0.00 0.00 3.85
2414 2796 1.482593 AGATGTGGGAATCGGACTGAC 59.517 52.381 0.00 0.00 0.00 3.51
2505 2887 2.611971 GGCGTATGTTGGTGAGACAGAA 60.612 50.000 0.00 0.00 0.00 3.02
2616 2998 4.142945 GCATCTATCATCAGTTCCATTCGC 60.143 45.833 0.00 0.00 0.00 4.70
2636 3018 4.562789 TCGCTATTTATGCATGCTCGATAC 59.437 41.667 20.33 0.88 0.00 2.24
2640 3022 7.340699 GCTATTTATGCATGCTCGATACATAC 58.659 38.462 20.33 3.81 0.00 2.39
2644 3026 7.755582 TTATGCATGCTCGATACATACATAC 57.244 36.000 20.33 0.00 34.83 2.39
3375 3767 8.034058 AGATCGAATCTAACTCAAAAAGGTTG 57.966 34.615 0.00 0.00 38.00 3.77
3481 3905 1.140452 TCCATGAGCAGGCAAGAGATC 59.860 52.381 0.00 0.00 0.00 2.75
3696 4126 2.166907 GAGGAGATTGAGACCCTCCA 57.833 55.000 9.92 0.00 46.74 3.86
3797 4227 1.215673 TCGACATAGAGGCCTCCTTCT 59.784 52.381 29.54 13.43 31.76 2.85
4405 4880 3.606384 GCTCGTTTATGCAGCAGATCATG 60.606 47.826 0.00 0.00 33.06 3.07
4439 4914 1.377725 CAGTGGGTAGCAAGCTGGG 60.378 63.158 4.53 0.00 0.00 4.45
4514 4989 1.153549 GCCTGGTAGCTTGACTCGG 60.154 63.158 0.00 0.00 0.00 4.63
4835 5312 8.044309 TGATCGGAATTTCTGATTTTAGGTGTA 58.956 33.333 19.28 0.04 42.24 2.90
4854 5331 6.707608 AGGTGTATACATTATACGAGACACGA 59.292 38.462 9.18 0.00 43.05 4.35
4974 5451 2.224426 ACTTGCACCTTCAATCGGTACA 60.224 45.455 0.00 0.00 32.37 2.90
4996 5473 9.432077 GTACATTTTGGCTTTGTTAAACATTTG 57.568 29.630 0.00 0.00 0.00 2.32
5094 5571 6.030548 TGCTATCTACCTTATCATCAGCAC 57.969 41.667 0.00 0.00 31.97 4.40
5247 5727 9.688091 TGTATATATAAAAAGCCAAGTGGTGAA 57.312 29.630 0.00 0.00 37.57 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.321074 CCACCGGTCAGGACTACCTC 61.321 65.000 2.59 0.00 45.94 3.85
2 3 3.015312 GCCACCGGTCAGGACTACC 62.015 68.421 15.00 0.00 45.00 3.18
3 4 2.280552 TGCCACCGGTCAGGACTAC 61.281 63.158 15.00 0.00 45.00 2.73
4 5 2.118732 TGCCACCGGTCAGGACTA 59.881 61.111 15.00 0.00 45.00 2.59
5 6 3.626924 GTGCCACCGGTCAGGACT 61.627 66.667 15.00 0.00 45.00 3.85
6 7 3.469863 TTGTGCCACCGGTCAGGAC 62.470 63.158 15.00 15.77 45.00 3.85
7 8 3.164977 TTGTGCCACCGGTCAGGA 61.165 61.111 15.00 3.01 45.00 3.86
9 10 1.227823 TTCTTGTGCCACCGGTCAG 60.228 57.895 2.59 0.00 0.00 3.51
10 11 1.227823 CTTCTTGTGCCACCGGTCA 60.228 57.895 2.59 0.00 0.00 4.02
11 12 1.966451 CCTTCTTGTGCCACCGGTC 60.966 63.158 2.59 0.00 0.00 4.79
12 13 2.113139 CCTTCTTGTGCCACCGGT 59.887 61.111 0.00 0.00 0.00 5.28
13 14 1.672356 CTCCTTCTTGTGCCACCGG 60.672 63.158 0.00 0.00 0.00 5.28
14 15 2.328099 GCTCCTTCTTGTGCCACCG 61.328 63.158 0.00 0.00 0.00 4.94
15 16 0.957888 GAGCTCCTTCTTGTGCCACC 60.958 60.000 0.87 0.00 0.00 4.61
16 17 0.957888 GGAGCTCCTTCTTGTGCCAC 60.958 60.000 26.25 0.00 0.00 5.01
17 18 1.376466 GGAGCTCCTTCTTGTGCCA 59.624 57.895 26.25 0.00 0.00 4.92
18 19 1.377856 GGGAGCTCCTTCTTGTGCC 60.378 63.158 31.36 8.41 35.95 5.01
19 20 1.743252 CGGGAGCTCCTTCTTGTGC 60.743 63.158 31.36 11.75 35.95 4.57
20 21 0.390472 GTCGGGAGCTCCTTCTTGTG 60.390 60.000 31.36 12.86 35.95 3.33
21 22 1.878656 CGTCGGGAGCTCCTTCTTGT 61.879 60.000 31.36 0.00 35.95 3.16
22 23 1.153745 CGTCGGGAGCTCCTTCTTG 60.154 63.158 31.36 16.15 35.95 3.02
23 24 2.352032 CCGTCGGGAGCTCCTTCTT 61.352 63.158 31.36 0.00 35.95 2.52
24 25 2.756283 CCGTCGGGAGCTCCTTCT 60.756 66.667 31.36 0.00 35.95 2.85
25 26 4.516195 GCCGTCGGGAGCTCCTTC 62.516 72.222 31.36 19.58 35.95 3.46
43 44 3.747976 AAACCAATCGCTGCCGCC 61.748 61.111 0.00 0.00 0.00 6.13
44 45 2.504681 CAAACCAATCGCTGCCGC 60.505 61.111 0.00 0.00 0.00 6.53
45 46 2.179018 CCAAACCAATCGCTGCCG 59.821 61.111 0.00 0.00 0.00 5.69
46 47 2.212900 GACCCAAACCAATCGCTGCC 62.213 60.000 0.00 0.00 0.00 4.85
47 48 1.212751 GACCCAAACCAATCGCTGC 59.787 57.895 0.00 0.00 0.00 5.25
48 49 0.609131 AGGACCCAAACCAATCGCTG 60.609 55.000 0.00 0.00 0.00 5.18
49 50 0.322546 GAGGACCCAAACCAATCGCT 60.323 55.000 0.00 0.00 0.00 4.93
50 51 1.644786 CGAGGACCCAAACCAATCGC 61.645 60.000 0.00 0.00 0.00 4.58
51 52 0.036765 TCGAGGACCCAAACCAATCG 60.037 55.000 0.00 0.00 0.00 3.34
52 53 2.092914 AGATCGAGGACCCAAACCAATC 60.093 50.000 0.00 0.00 0.00 2.67
53 54 1.916181 AGATCGAGGACCCAAACCAAT 59.084 47.619 0.00 0.00 0.00 3.16
54 55 1.003118 CAGATCGAGGACCCAAACCAA 59.997 52.381 0.00 0.00 0.00 3.67
55 56 0.613260 CAGATCGAGGACCCAAACCA 59.387 55.000 0.00 0.00 0.00 3.67
56 57 0.902531 TCAGATCGAGGACCCAAACC 59.097 55.000 0.00 0.00 0.00 3.27
57 58 2.432510 AGATCAGATCGAGGACCCAAAC 59.567 50.000 4.67 0.00 0.00 2.93
58 59 2.432146 CAGATCAGATCGAGGACCCAAA 59.568 50.000 4.67 0.00 0.00 3.28
59 60 2.034878 CAGATCAGATCGAGGACCCAA 58.965 52.381 4.67 0.00 0.00 4.12
60 61 1.215423 TCAGATCAGATCGAGGACCCA 59.785 52.381 4.67 0.00 0.00 4.51
61 62 1.885887 CTCAGATCAGATCGAGGACCC 59.114 57.143 17.71 0.00 0.00 4.46
62 63 2.813754 CTCTCAGATCAGATCGAGGACC 59.186 54.545 21.87 0.00 33.68 4.46
63 64 2.813754 CCTCTCAGATCAGATCGAGGAC 59.186 54.545 20.60 0.00 36.89 3.85
64 65 2.708325 TCCTCTCAGATCAGATCGAGGA 59.292 50.000 22.54 22.54 39.53 3.71
65 66 3.076621 CTCCTCTCAGATCAGATCGAGG 58.923 54.545 19.73 19.73 36.41 4.63
66 67 4.006780 TCTCCTCTCAGATCAGATCGAG 57.993 50.000 18.71 18.71 33.94 4.04
67 68 4.041444 TCATCTCCTCTCAGATCAGATCGA 59.959 45.833 4.67 5.03 30.07 3.59
68 69 4.325972 TCATCTCCTCTCAGATCAGATCG 58.674 47.826 4.67 0.84 30.07 3.69
69 70 6.491062 TCTTTCATCTCCTCTCAGATCAGATC 59.509 42.308 1.64 1.64 30.07 2.75
70 71 6.375418 TCTTTCATCTCCTCTCAGATCAGAT 58.625 40.000 0.00 0.00 30.07 2.90
71 72 5.764432 TCTTTCATCTCCTCTCAGATCAGA 58.236 41.667 0.00 0.00 30.07 3.27
72 73 5.829391 TCTCTTTCATCTCCTCTCAGATCAG 59.171 44.000 0.00 0.00 30.07 2.90
73 74 5.764432 TCTCTTTCATCTCCTCTCAGATCA 58.236 41.667 0.00 0.00 30.07 2.92
74 75 5.829924 ACTCTCTTTCATCTCCTCTCAGATC 59.170 44.000 0.00 0.00 30.07 2.75
75 76 5.769835 ACTCTCTTTCATCTCCTCTCAGAT 58.230 41.667 0.00 0.00 33.00 2.90
76 77 5.191727 ACTCTCTTTCATCTCCTCTCAGA 57.808 43.478 0.00 0.00 0.00 3.27
77 78 5.653507 CAACTCTCTTTCATCTCCTCTCAG 58.346 45.833 0.00 0.00 0.00 3.35
78 79 4.081752 GCAACTCTCTTTCATCTCCTCTCA 60.082 45.833 0.00 0.00 0.00 3.27
79 80 4.432712 GCAACTCTCTTTCATCTCCTCTC 58.567 47.826 0.00 0.00 0.00 3.20
80 81 3.119173 CGCAACTCTCTTTCATCTCCTCT 60.119 47.826 0.00 0.00 0.00 3.69
81 82 3.186119 CGCAACTCTCTTTCATCTCCTC 58.814 50.000 0.00 0.00 0.00 3.71
82 83 2.093764 CCGCAACTCTCTTTCATCTCCT 60.094 50.000 0.00 0.00 0.00 3.69
83 84 2.275318 CCGCAACTCTCTTTCATCTCC 58.725 52.381 0.00 0.00 0.00 3.71
84 85 2.670414 CACCGCAACTCTCTTTCATCTC 59.330 50.000 0.00 0.00 0.00 2.75
85 86 2.613977 CCACCGCAACTCTCTTTCATCT 60.614 50.000 0.00 0.00 0.00 2.90
86 87 1.734465 CCACCGCAACTCTCTTTCATC 59.266 52.381 0.00 0.00 0.00 2.92
87 88 1.813513 CCACCGCAACTCTCTTTCAT 58.186 50.000 0.00 0.00 0.00 2.57
88 89 0.884704 GCCACCGCAACTCTCTTTCA 60.885 55.000 0.00 0.00 34.03 2.69
89 90 0.884704 TGCCACCGCAACTCTCTTTC 60.885 55.000 0.00 0.00 43.74 2.62
90 91 1.148273 TGCCACCGCAACTCTCTTT 59.852 52.632 0.00 0.00 43.74 2.52
91 92 2.828868 TGCCACCGCAACTCTCTT 59.171 55.556 0.00 0.00 43.74 2.85
99 100 1.034838 ACTTCAAAAGTGCCACCGCA 61.035 50.000 0.00 0.00 44.78 5.69
100 101 0.948678 TACTTCAAAAGTGCCACCGC 59.051 50.000 2.65 0.00 42.84 5.68
101 102 3.915437 ATTACTTCAAAAGTGCCACCG 57.085 42.857 2.65 0.00 42.84 4.94
102 103 5.222631 CAGAATTACTTCAAAAGTGCCACC 58.777 41.667 2.65 0.00 42.84 4.61
103 104 5.221244 ACCAGAATTACTTCAAAAGTGCCAC 60.221 40.000 2.65 0.00 42.84 5.01
104 105 4.892934 ACCAGAATTACTTCAAAAGTGCCA 59.107 37.500 2.65 0.00 42.84 4.92
105 106 5.453567 ACCAGAATTACTTCAAAAGTGCC 57.546 39.130 2.65 0.00 42.84 5.01
112 113 9.627123 CCCTGATATTTACCAGAATTACTTCAA 57.373 33.333 0.00 0.00 33.56 2.69
113 114 7.719633 GCCCTGATATTTACCAGAATTACTTCA 59.280 37.037 0.00 0.00 33.56 3.02
114 115 7.175119 GGCCCTGATATTTACCAGAATTACTTC 59.825 40.741 0.00 0.00 32.37 3.01
115 116 7.004691 GGCCCTGATATTTACCAGAATTACTT 58.995 38.462 0.00 0.00 32.37 2.24
116 117 6.332901 AGGCCCTGATATTTACCAGAATTACT 59.667 38.462 0.00 0.00 32.37 2.24
117 118 6.543735 AGGCCCTGATATTTACCAGAATTAC 58.456 40.000 0.00 0.00 32.37 1.89
118 119 6.780198 AGGCCCTGATATTTACCAGAATTA 57.220 37.500 0.00 0.00 32.37 1.40
119 120 5.669798 AGGCCCTGATATTTACCAGAATT 57.330 39.130 0.00 0.00 32.37 2.17
120 121 6.069381 GGATAGGCCCTGATATTTACCAGAAT 60.069 42.308 0.00 0.00 32.37 2.40
121 122 5.250774 GGATAGGCCCTGATATTTACCAGAA 59.749 44.000 0.00 0.00 32.37 3.02
122 123 4.783227 GGATAGGCCCTGATATTTACCAGA 59.217 45.833 0.00 0.00 32.37 3.86
123 124 4.383118 CGGATAGGCCCTGATATTTACCAG 60.383 50.000 0.00 0.00 0.00 4.00
124 125 3.517901 CGGATAGGCCCTGATATTTACCA 59.482 47.826 0.00 0.00 0.00 3.25
125 126 3.518303 ACGGATAGGCCCTGATATTTACC 59.482 47.826 0.00 0.00 0.00 2.85
126 127 4.020485 ACACGGATAGGCCCTGATATTTAC 60.020 45.833 0.00 0.00 0.00 2.01
127 128 4.164981 ACACGGATAGGCCCTGATATTTA 58.835 43.478 0.00 0.00 0.00 1.40
128 129 2.979678 ACACGGATAGGCCCTGATATTT 59.020 45.455 0.00 0.00 0.00 1.40
129 130 2.621070 ACACGGATAGGCCCTGATATT 58.379 47.619 0.00 0.00 0.00 1.28
130 131 2.327325 ACACGGATAGGCCCTGATAT 57.673 50.000 0.00 0.00 0.00 1.63
131 132 2.522185 GTACACGGATAGGCCCTGATA 58.478 52.381 0.00 0.00 0.00 2.15
132 133 1.339097 GTACACGGATAGGCCCTGAT 58.661 55.000 0.00 0.00 0.00 2.90
133 134 0.757935 GGTACACGGATAGGCCCTGA 60.758 60.000 0.00 0.00 0.00 3.86
134 135 1.746517 GGTACACGGATAGGCCCTG 59.253 63.158 0.00 0.00 0.00 4.45
135 136 1.831286 CGGTACACGGATAGGCCCT 60.831 63.158 0.00 0.00 39.42 5.19
136 137 2.732658 CGGTACACGGATAGGCCC 59.267 66.667 0.00 0.00 39.42 5.80
145 146 2.794350 ACTTAAAACGAACCGGTACACG 59.206 45.455 21.21 21.21 43.80 4.49
146 147 3.059665 CCACTTAAAACGAACCGGTACAC 60.060 47.826 8.00 1.35 0.00 2.90
147 148 3.129871 CCACTTAAAACGAACCGGTACA 58.870 45.455 8.00 0.00 0.00 2.90
148 149 3.389221 TCCACTTAAAACGAACCGGTAC 58.611 45.455 8.00 0.00 0.00 3.34
149 150 3.742433 TCCACTTAAAACGAACCGGTA 57.258 42.857 8.00 0.00 0.00 4.02
150 151 2.618442 TCCACTTAAAACGAACCGGT 57.382 45.000 0.00 0.00 0.00 5.28
151 152 2.350102 GCTTCCACTTAAAACGAACCGG 60.350 50.000 0.00 0.00 0.00 5.28
152 153 2.660900 CGCTTCCACTTAAAACGAACCG 60.661 50.000 0.00 0.00 0.00 4.44
153 154 2.912366 CGCTTCCACTTAAAACGAACC 58.088 47.619 0.00 0.00 0.00 3.62
154 155 2.304413 GCGCTTCCACTTAAAACGAAC 58.696 47.619 0.00 0.00 0.00 3.95
155 156 1.070443 CGCGCTTCCACTTAAAACGAA 60.070 47.619 5.56 0.00 0.00 3.85
156 157 0.509499 CGCGCTTCCACTTAAAACGA 59.491 50.000 5.56 0.00 0.00 3.85
157 158 0.452122 CCGCGCTTCCACTTAAAACG 60.452 55.000 5.56 0.00 0.00 3.60
158 159 0.109919 CCCGCGCTTCCACTTAAAAC 60.110 55.000 5.56 0.00 0.00 2.43
159 160 0.535553 ACCCGCGCTTCCACTTAAAA 60.536 50.000 5.56 0.00 0.00 1.52
160 161 1.071814 ACCCGCGCTTCCACTTAAA 59.928 52.632 5.56 0.00 0.00 1.52
161 162 1.669760 CACCCGCGCTTCCACTTAA 60.670 57.895 5.56 0.00 0.00 1.85
162 163 2.047655 CACCCGCGCTTCCACTTA 60.048 61.111 5.56 0.00 0.00 2.24
180 181 3.200593 GATGCAGCCTCGTGCCTG 61.201 66.667 0.00 0.00 43.28 4.85
181 182 4.827087 CGATGCAGCCTCGTGCCT 62.827 66.667 11.59 0.00 43.28 4.75
192 193 2.434185 GGACGTTCCTGCGATGCA 60.434 61.111 0.00 0.00 36.92 3.96
193 194 3.554692 CGGACGTTCCTGCGATGC 61.555 66.667 0.00 0.00 33.30 3.91
194 195 0.806102 AATCGGACGTTCCTGCGATG 60.806 55.000 1.13 0.00 43.10 3.84
195 196 0.527817 GAATCGGACGTTCCTGCGAT 60.528 55.000 0.00 0.00 45.49 4.58
196 197 1.153901 GAATCGGACGTTCCTGCGA 60.154 57.895 0.00 0.00 38.45 5.10
197 198 2.165301 GGAATCGGACGTTCCTGCG 61.165 63.158 14.46 0.00 41.52 5.18
198 199 3.795638 GGAATCGGACGTTCCTGC 58.204 61.111 14.46 0.00 41.52 4.85
201 202 0.462047 ATGCAGGAATCGGACGTTCC 60.462 55.000 14.11 14.11 44.39 3.62
202 203 1.327764 GAATGCAGGAATCGGACGTTC 59.672 52.381 0.00 0.00 0.00 3.95
203 204 1.369625 GAATGCAGGAATCGGACGTT 58.630 50.000 0.00 0.00 0.00 3.99
204 205 0.462047 GGAATGCAGGAATCGGACGT 60.462 55.000 0.00 0.00 0.00 4.34
205 206 0.179073 AGGAATGCAGGAATCGGACG 60.179 55.000 0.00 0.00 0.00 4.79
206 207 1.139853 AGAGGAATGCAGGAATCGGAC 59.860 52.381 0.00 0.00 0.00 4.79
207 208 1.414181 GAGAGGAATGCAGGAATCGGA 59.586 52.381 0.00 0.00 0.00 4.55
208 209 1.139654 TGAGAGGAATGCAGGAATCGG 59.860 52.381 0.00 0.00 0.00 4.18
209 210 2.481854 CTGAGAGGAATGCAGGAATCG 58.518 52.381 0.00 0.00 0.00 3.34
210 211 2.220313 GCTGAGAGGAATGCAGGAATC 58.780 52.381 0.00 0.00 0.00 2.52
211 212 1.133853 GGCTGAGAGGAATGCAGGAAT 60.134 52.381 0.00 0.00 0.00 3.01
212 213 0.254178 GGCTGAGAGGAATGCAGGAA 59.746 55.000 0.00 0.00 0.00 3.36
213 214 0.619832 AGGCTGAGAGGAATGCAGGA 60.620 55.000 0.00 0.00 0.00 3.86
214 215 0.464013 CAGGCTGAGAGGAATGCAGG 60.464 60.000 9.42 0.00 0.00 4.85
215 216 0.464013 CCAGGCTGAGAGGAATGCAG 60.464 60.000 17.94 0.00 0.00 4.41
216 217 1.605992 CCAGGCTGAGAGGAATGCA 59.394 57.895 17.94 0.00 0.00 3.96
217 218 1.823041 GCCAGGCTGAGAGGAATGC 60.823 63.158 17.94 4.03 0.00 3.56
218 219 1.913722 AGCCAGGCTGAGAGGAATG 59.086 57.895 15.24 0.00 37.57 2.67
219 220 4.496173 AGCCAGGCTGAGAGGAAT 57.504 55.556 15.24 0.00 37.57 3.01
234 235 2.032681 AAACAGAGGCCCGTCAGC 59.967 61.111 0.00 0.00 0.00 4.26
235 236 2.328099 GCAAACAGAGGCCCGTCAG 61.328 63.158 0.00 0.00 0.00 3.51
236 237 2.281484 GCAAACAGAGGCCCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
237 238 1.648467 GATGCAAACAGAGGCCCGTC 61.648 60.000 0.00 0.00 0.00 4.79
238 239 1.675641 GATGCAAACAGAGGCCCGT 60.676 57.895 0.00 0.00 0.00 5.28
239 240 1.651240 CTGATGCAAACAGAGGCCCG 61.651 60.000 16.03 0.00 39.37 6.13
240 241 0.610232 ACTGATGCAAACAGAGGCCC 60.610 55.000 24.24 0.00 39.37 5.80
241 242 1.068055 CAACTGATGCAAACAGAGGCC 60.068 52.381 24.24 0.00 39.37 5.19
242 243 1.068055 CCAACTGATGCAAACAGAGGC 60.068 52.381 24.24 0.00 39.37 4.70
243 244 1.542915 CCCAACTGATGCAAACAGAGG 59.457 52.381 24.24 22.32 39.37 3.69
244 245 1.068055 GCCCAACTGATGCAAACAGAG 60.068 52.381 24.24 17.08 39.37 3.35
245 246 0.961019 GCCCAACTGATGCAAACAGA 59.039 50.000 24.24 0.00 39.37 3.41
246 247 0.037975 GGCCCAACTGATGCAAACAG 60.038 55.000 18.41 18.41 43.16 3.16
247 248 0.758310 TGGCCCAACTGATGCAAACA 60.758 50.000 0.00 0.00 0.00 2.83
248 249 0.037975 CTGGCCCAACTGATGCAAAC 60.038 55.000 0.00 0.00 0.00 2.93
249 250 1.186917 CCTGGCCCAACTGATGCAAA 61.187 55.000 0.00 0.00 0.00 3.68
250 251 1.607178 CCTGGCCCAACTGATGCAA 60.607 57.895 0.00 0.00 0.00 4.08
251 252 2.036098 CCTGGCCCAACTGATGCA 59.964 61.111 0.00 0.00 0.00 3.96
252 253 3.455469 GCCTGGCCCAACTGATGC 61.455 66.667 7.66 0.00 0.00 3.91
253 254 2.050350 CAGCCTGGCCCAACTGATG 61.050 63.158 16.57 0.00 31.67 3.07
254 255 2.207501 CTCAGCCTGGCCCAACTGAT 62.208 60.000 16.57 0.00 38.41 2.90
255 256 2.853542 TCAGCCTGGCCCAACTGA 60.854 61.111 16.57 11.17 36.84 3.41
256 257 2.360852 CTCAGCCTGGCCCAACTG 60.361 66.667 16.57 6.81 0.00 3.16
257 258 3.655211 CCTCAGCCTGGCCCAACT 61.655 66.667 16.57 0.00 0.00 3.16
258 259 3.635268 CTCCTCAGCCTGGCCCAAC 62.635 68.421 16.57 0.00 0.00 3.77
259 260 3.333219 CTCCTCAGCCTGGCCCAA 61.333 66.667 16.57 0.00 0.00 4.12
268 269 2.046507 CTGTGTGGCCTCCTCAGC 60.047 66.667 3.32 0.00 0.00 4.26
269 270 1.915266 TCCTGTGTGGCCTCCTCAG 60.915 63.158 3.32 11.69 35.26 3.35
270 271 2.204034 TCCTGTGTGGCCTCCTCA 59.796 61.111 3.32 1.89 35.26 3.86
271 272 2.217038 TGTCCTGTGTGGCCTCCTC 61.217 63.158 3.32 0.00 35.26 3.71
272 273 2.122413 TGTCCTGTGTGGCCTCCT 60.122 61.111 3.32 0.00 35.26 3.69
273 274 2.032681 GTGTCCTGTGTGGCCTCC 59.967 66.667 3.32 0.00 35.26 4.30
274 275 2.032681 GGTGTCCTGTGTGGCCTC 59.967 66.667 3.32 0.00 35.26 4.70
275 276 1.932156 TTTGGTGTCCTGTGTGGCCT 61.932 55.000 3.32 0.00 35.26 5.19
276 277 1.454847 TTTGGTGTCCTGTGTGGCC 60.455 57.895 0.00 0.00 35.26 5.36
277 278 1.034838 TGTTTGGTGTCCTGTGTGGC 61.035 55.000 0.00 0.00 35.26 5.01
278 279 1.024271 CTGTTTGGTGTCCTGTGTGG 58.976 55.000 0.00 0.00 37.10 4.17
279 280 1.024271 CCTGTTTGGTGTCCTGTGTG 58.976 55.000 0.00 0.00 0.00 3.82
280 281 0.751643 GCCTGTTTGGTGTCCTGTGT 60.752 55.000 0.00 0.00 38.35 3.72
281 282 1.455383 GGCCTGTTTGGTGTCCTGTG 61.455 60.000 0.00 0.00 38.35 3.66
282 283 1.152756 GGCCTGTTTGGTGTCCTGT 60.153 57.895 0.00 0.00 38.35 4.00
283 284 1.152777 TGGCCTGTTTGGTGTCCTG 60.153 57.895 3.32 0.00 38.35 3.86
284 285 1.151450 CTGGCCTGTTTGGTGTCCT 59.849 57.895 3.32 0.00 38.35 3.85
285 286 0.251341 ATCTGGCCTGTTTGGTGTCC 60.251 55.000 3.32 0.00 38.35 4.02
286 287 1.620822 AATCTGGCCTGTTTGGTGTC 58.379 50.000 3.32 0.00 38.35 3.67
287 288 2.969821 TAATCTGGCCTGTTTGGTGT 57.030 45.000 14.37 0.00 38.35 4.16
288 289 2.159198 GCATAATCTGGCCTGTTTGGTG 60.159 50.000 14.37 13.22 38.35 4.17
289 290 2.102578 GCATAATCTGGCCTGTTTGGT 58.897 47.619 14.37 2.80 38.35 3.67
290 291 2.101783 TGCATAATCTGGCCTGTTTGG 58.898 47.619 14.37 8.65 39.35 3.28
291 292 3.131577 ACATGCATAATCTGGCCTGTTTG 59.868 43.478 14.37 7.54 35.76 2.93
292 293 3.131577 CACATGCATAATCTGGCCTGTTT 59.868 43.478 3.32 7.79 36.87 2.83
293 294 2.691526 CACATGCATAATCTGGCCTGTT 59.308 45.455 3.32 3.56 36.87 3.16
294 295 2.304092 CACATGCATAATCTGGCCTGT 58.696 47.619 3.32 0.00 39.03 4.00
295 296 2.034179 CACACATGCATAATCTGGCCTG 59.966 50.000 3.32 2.92 0.00 4.85
296 297 2.304092 CACACATGCATAATCTGGCCT 58.696 47.619 3.32 0.00 0.00 5.19
297 298 1.338973 CCACACATGCATAATCTGGCC 59.661 52.381 0.00 0.00 0.00 5.36
298 299 2.026641 ACCACACATGCATAATCTGGC 58.973 47.619 0.00 0.00 0.00 4.85
299 300 2.223641 GCACCACACATGCATAATCTGG 60.224 50.000 0.00 4.62 42.88 3.86
300 301 2.540157 CGCACCACACATGCATAATCTG 60.540 50.000 0.00 0.00 43.57 2.90
301 302 1.672363 CGCACCACACATGCATAATCT 59.328 47.619 0.00 0.00 43.57 2.40
302 303 1.670295 TCGCACCACACATGCATAATC 59.330 47.619 0.00 0.00 43.57 1.75
303 304 1.748950 TCGCACCACACATGCATAAT 58.251 45.000 0.00 0.00 43.57 1.28
304 305 1.401199 CATCGCACCACACATGCATAA 59.599 47.619 0.00 0.00 43.57 1.90
305 306 1.015868 CATCGCACCACACATGCATA 58.984 50.000 0.00 0.00 43.57 3.14
306 307 1.804598 CATCGCACCACACATGCAT 59.195 52.632 0.00 0.00 43.57 3.96
307 308 2.980378 GCATCGCACCACACATGCA 61.980 57.895 0.00 0.00 43.57 3.96
308 309 2.202518 GCATCGCACCACACATGC 60.203 61.111 0.00 0.00 39.81 4.06
309 310 1.135939 CTGCATCGCACCACACATG 59.864 57.895 0.00 0.00 33.79 3.21
310 311 2.042259 CCTGCATCGCACCACACAT 61.042 57.895 0.00 0.00 33.79 3.21
311 312 2.669229 CCTGCATCGCACCACACA 60.669 61.111 0.00 0.00 33.79 3.72
312 313 2.669569 ACCTGCATCGCACCACAC 60.670 61.111 0.00 0.00 33.79 3.82
313 314 2.669229 CACCTGCATCGCACCACA 60.669 61.111 0.00 0.00 33.79 4.17
314 315 4.107051 GCACCTGCATCGCACCAC 62.107 66.667 0.00 0.00 41.59 4.16
317 318 3.857854 CTCGCACCTGCATCGCAC 61.858 66.667 0.00 0.00 42.21 5.34
321 322 4.819761 TCGGCTCGCACCTGCATC 62.820 66.667 0.00 0.00 42.21 3.91
325 326 2.664851 TTTGTCGGCTCGCACCTG 60.665 61.111 0.00 0.00 0.00 4.00
326 327 2.665185 GTTTGTCGGCTCGCACCT 60.665 61.111 0.00 0.00 0.00 4.00
327 328 3.723348 GGTTTGTCGGCTCGCACC 61.723 66.667 0.00 0.00 0.00 5.01
328 329 2.054140 TTTGGTTTGTCGGCTCGCAC 62.054 55.000 0.00 0.00 0.00 5.34
329 330 1.820056 TTTGGTTTGTCGGCTCGCA 60.820 52.632 0.00 0.00 0.00 5.10
330 331 1.370051 GTTTGGTTTGTCGGCTCGC 60.370 57.895 0.00 0.00 0.00 5.03
331 332 0.316689 GTGTTTGGTTTGTCGGCTCG 60.317 55.000 0.00 0.00 0.00 5.03
332 333 0.316689 CGTGTTTGGTTTGTCGGCTC 60.317 55.000 0.00 0.00 0.00 4.70
333 334 1.725066 CGTGTTTGGTTTGTCGGCT 59.275 52.632 0.00 0.00 0.00 5.52
334 335 1.942223 GCGTGTTTGGTTTGTCGGC 60.942 57.895 0.00 0.00 0.00 5.54
335 336 1.298788 GGCGTGTTTGGTTTGTCGG 60.299 57.895 0.00 0.00 0.00 4.79
336 337 0.938713 TAGGCGTGTTTGGTTTGTCG 59.061 50.000 0.00 0.00 0.00 4.35
337 338 2.351350 CCATAGGCGTGTTTGGTTTGTC 60.351 50.000 0.00 0.00 0.00 3.18
338 339 1.611491 CCATAGGCGTGTTTGGTTTGT 59.389 47.619 0.00 0.00 0.00 2.83
339 340 1.668628 GCCATAGGCGTGTTTGGTTTG 60.669 52.381 0.00 0.00 39.62 2.93
340 341 0.601057 GCCATAGGCGTGTTTGGTTT 59.399 50.000 0.00 0.00 39.62 3.27
341 342 2.263153 GCCATAGGCGTGTTTGGTT 58.737 52.632 0.00 0.00 39.62 3.67
342 343 3.996614 GCCATAGGCGTGTTTGGT 58.003 55.556 0.00 0.00 39.62 3.67
352 353 2.489329 CCAAGTTGTCAGTTGCCATAGG 59.511 50.000 1.45 0.00 32.55 2.57
353 354 3.058016 CACCAAGTTGTCAGTTGCCATAG 60.058 47.826 1.45 0.00 32.55 2.23
354 355 2.884012 CACCAAGTTGTCAGTTGCCATA 59.116 45.455 1.45 0.00 32.55 2.74
378 381 3.062466 CACGCCCGTCTCCTCTCA 61.062 66.667 0.00 0.00 0.00 3.27
399 402 4.351127 ACTCCTAAAGATACCACCTTCGT 58.649 43.478 0.00 0.00 0.00 3.85
403 406 3.200165 GGCAACTCCTAAAGATACCACCT 59.800 47.826 0.00 0.00 0.00 4.00
470 475 3.991121 ACCCGAACATTTTATTTTTGCCG 59.009 39.130 0.00 0.00 0.00 5.69
482 487 5.221661 ACAACTCTCTCTTTACCCGAACATT 60.222 40.000 0.00 0.00 0.00 2.71
579 588 0.323542 ACGTCCGTCTTCTCTCCCAT 60.324 55.000 0.00 0.00 0.00 4.00
595 604 0.319083 TTATCAGTTCGCCCACACGT 59.681 50.000 0.00 0.00 0.00 4.49
641 650 0.941542 CCACACGTCGGTTTTCATGT 59.058 50.000 0.00 0.00 0.00 3.21
643 653 1.512156 GCCCACACGTCGGTTTTCAT 61.512 55.000 0.00 0.00 0.00 2.57
651 662 3.403057 CAGTTCGCCCACACGTCG 61.403 66.667 0.00 0.00 0.00 5.12
653 664 2.372040 TTAGCAGTTCGCCCACACGT 62.372 55.000 0.00 0.00 44.04 4.49
682 693 1.754803 CACTACGTGAAGGGGCTGATA 59.245 52.381 0.00 0.00 35.23 2.15
684 695 0.541063 TCACTACGTGAAGGGGCTGA 60.541 55.000 0.00 0.00 39.78 4.26
695 706 1.847999 CACACGTTCGTTTCACTACGT 59.152 47.619 0.00 0.00 46.90 3.57
699 711 1.433837 GCCCACACGTTCGTTTCACT 61.434 55.000 0.00 0.00 0.00 3.41
726 738 1.582610 GGTTGGTGTGTGGGCATACG 61.583 60.000 0.00 0.00 37.56 3.06
728 740 1.280710 CTAGGTTGGTGTGTGGGCATA 59.719 52.381 0.00 0.00 0.00 3.14
773 787 6.343716 TGCATGAATCTTGGTATGTTTTGT 57.656 33.333 0.00 0.00 0.00 2.83
782 796 6.819649 CCATTTGTATTTGCATGAATCTTGGT 59.180 34.615 0.00 0.00 0.00 3.67
799 813 2.498644 TGGATCAACGCCCATTTGTA 57.501 45.000 0.00 0.00 0.00 2.41
805 819 0.182299 TATGCATGGATCAACGCCCA 59.818 50.000 10.16 0.00 36.79 5.36
808 822 3.061295 CGTCTATATGCATGGATCAACGC 59.939 47.826 10.16 0.00 0.00 4.84
824 838 3.347411 GCGTTTGCCTCTCGTCTAT 57.653 52.632 0.00 0.00 33.98 1.98
851 866 8.083828 AGACTCATCTTTACACTAACATCCAT 57.916 34.615 0.00 0.00 0.00 3.41
883 898 6.315642 GCCAGGGAAAGTTAGTACTAAATCAC 59.684 42.308 16.82 15.35 33.17 3.06
906 921 2.989055 TTTATAGCTGCGCCGAGGCC 62.989 60.000 4.18 0.00 37.98 5.19
964 994 4.155099 GGCTAGAAAACTGAAGAGGAAAGC 59.845 45.833 0.00 0.00 0.00 3.51
1483 1532 2.475353 CCGCCAAGCAAACAAACAAAAC 60.475 45.455 0.00 0.00 0.00 2.43
2279 2661 1.000506 GGACGTACAACTCTTCCTGCA 59.999 52.381 0.00 0.00 0.00 4.41
2280 2662 1.272769 AGGACGTACAACTCTTCCTGC 59.727 52.381 0.00 0.00 35.28 4.85
2281 2663 2.947852 CAGGACGTACAACTCTTCCTG 58.052 52.381 0.00 0.00 45.59 3.86
2387 2769 2.103094 CCGATTCCCACATCTGCTTCTA 59.897 50.000 0.00 0.00 0.00 2.10
2414 2796 5.575218 GCAAATAACTTTCCCCAATTGTACG 59.425 40.000 4.43 0.00 0.00 3.67
2616 2998 8.411318 TGTATGTATCGAGCATGCATAAATAG 57.589 34.615 21.98 0.00 40.56 1.73
3375 3767 3.624861 ACGTGATGGAAATGCTCAATCTC 59.375 43.478 0.00 0.00 35.68 2.75
3523 3947 4.458989 GGCACTTTGATATCAAGAACCACA 59.541 41.667 17.28 1.35 37.15 4.17
3797 4227 2.771089 GATGTCAGAAGTGTTGAGGCA 58.229 47.619 0.00 0.00 0.00 4.75
4405 4880 4.160252 ACCCACTGGACAATGCAAAATATC 59.840 41.667 0.00 0.00 34.81 1.63
4439 4914 0.179108 GGGATGGACTCGTGTACTGC 60.179 60.000 0.93 0.00 0.00 4.40
4786 5263 2.479566 TCTGGGCTGCAAGTTTCTAG 57.520 50.000 0.50 0.00 35.30 2.43
4835 5312 6.872628 TTCCTCGTGTCTCGTATAATGTAT 57.127 37.500 0.00 0.00 40.80 2.29
4854 5331 7.227512 GGACAATTTCAGTGATCGATATTTCCT 59.772 37.037 0.00 0.00 0.00 3.36
4974 5451 8.518702 ACAACAAATGTTTAACAAAGCCAAAAT 58.481 25.926 0.66 0.00 40.06 1.82
5182 5662 8.796475 TGATTTTTCAATTTTTCAACCCAAACA 58.204 25.926 0.00 0.00 0.00 2.83
5247 5727 4.371624 TTTGTGGTGAGATGGAGAATGT 57.628 40.909 0.00 0.00 0.00 2.71
5258 5738 8.166422 ACTTAACCTCTTTATTTTGTGGTGAG 57.834 34.615 0.00 0.00 31.46 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.