AutoCloner

Multiple sequence alignment - TraesCS7A01G059700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G059700	chr7A	100.000	2726	0	0	1	2726	29104341	29107066	0.000000e+00	5035
1	TraesCS7A01G059700	chr7A	88.926	298	29	1	1484	1777	29022523	29022820	5.550000e-97	364
2	TraesCS7A01G059700	chr7A	83.438	320	32	7	823	1142	29022218	29022516	7.430000e-71	278
3	TraesCS7A01G059700	chr7A	91.724	145	11	1	658	802	29022014	29022157	1.660000e-47	200
4	TraesCS7A01G059700	chr7A	92.135	89	7	0	1	89	29010994	29011082	2.850000e-25	126
5	TraesCS7A01G059700	chr7A	91.250	80	6	1	2010	2089	692919257	692919179	1.030000e-19	108
6	TraesCS7A01G059700	chr7D	92.187	2419	122	25	1	2377	28690193	28692586	0.000000e+00	3358
7	TraesCS7A01G059700	chr7D	86.448	487	47	3	658	1142	28668464	28668933	1.450000e-142	516
8	TraesCS7A01G059700	chr7D	94.654	318	16	1	2409	2725	28692581	28692898	2.440000e-135	492
9	TraesCS7A01G059700	chr7D	90.667	300	21	5	1484	1777	28668934	28669232	2.540000e-105	392
10	TraesCS7A01G059700	chr7D	86.920	237	27	2	1554	1786	28598542	28598306	2.080000e-66	263
11	TraesCS7A01G059700	chr7D	86.920	237	27	2	1554	1786	28602748	28602512	2.080000e-66	263
12	TraesCS7A01G059700	chr7D	89.855	207	17	2	1554	1756	28648269	28648475	2.080000e-66	263
13	TraesCS7A01G059700	chr7D	92.135	89	7	0	1	89	28594625	28594713	2.850000e-25	126
14	TraesCS7A01G059700	chr7D	92.135	89	7	0	1	89	28651898	28651810	2.850000e-25	126
15	TraesCS7A01G059700	chr4A	90.914	1706	121	16	45	1734	702392507	702394194	0.000000e+00	2261
16	TraesCS7A01G059700	chr4A	91.901	605	47	2	1150	1754	702331741	702331139	0.000000e+00	845
17	TraesCS7A01G059700	chr4A	86.543	431	34	8	658	1084	702375421	702375831	1.150000e-123	453
18	TraesCS7A01G059700	chr4A	90.071	282	24	1	1500	1777	702375835	702376116	2.000000e-96	363
19	TraesCS7A01G059700	chr4A	84.519	239	28	7	794	1031	702332008	702331778	7.590000e-56	228
20	TraesCS7A01G059700	chr6B	97.101	69	2	0	2010	2078	398768925	398768857	1.720000e-22	117
21	TraesCS7A01G059700	chrUn	94.444	72	4	0	2010	2081	83591823	83591752	7.980000e-21	111
22	TraesCS7A01G059700	chr3B	95.652	69	3	0	2010	2078	75584758	75584826	7.980000e-21	111
23	TraesCS7A01G059700	chr1A	93.333	75	4	1	2009	2083	351005534	351005461	2.870000e-20	110
24	TraesCS7A01G059700	chr2B	93.243	74	3	2	2010	2083	440021212	440021141	1.030000e-19	108
25	TraesCS7A01G059700	chr2B	92.208	77	5	1	2010	2085	550399755	550399679	1.030000e-19	108
26	TraesCS7A01G059700	chr2B	92.208	77	4	2	2011	2086	800294255	800294330	1.030000e-19	108

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G059700	chr7A	29104341	29107066	2725	False	5035.000000	5035	100.000000	1	2726	1	chr7A.!!$F2	2725
1	TraesCS7A01G059700	chr7A	29022014	29022820	806	False	280.666667	364	88.029333	658	1777	3	chr7A.!!$F3	1119
2	TraesCS7A01G059700	chr7D	28690193	28692898	2705	False	1925.000000	3358	93.420500	1	2725	2	chr7D.!!$F4	2724
3	TraesCS7A01G059700	chr7D	28668464	28669232	768	False	454.000000	516	88.557500	658	1777	2	chr7D.!!$F3	1119
4	TraesCS7A01G059700	chr7D	28598306	28602748	4442	True	263.000000	263	86.920000	1554	1786	2	chr7D.!!$R2	232
5	TraesCS7A01G059700	chr4A	702392507	702394194	1687	False	2261.000000	2261	90.914000	45	1734	1	chr4A.!!$F1	1689
6	TraesCS7A01G059700	chr4A	702331139	702332008	869	True	536.500000	845	88.210000	794	1754	2	chr4A.!!$R1	960
7	TraesCS7A01G059700	chr4A	702375421	702376116	695	False	408.000000	453	88.307000	658	1777	2	chr4A.!!$F2	1119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
499	515	0.099968	CACCATTTGATCGCTGCCTG	59.9	55.0	0.0	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2116	4793	0.301687	GGTCAATCACATAGCGCACG	59.698	55.0	11.47	0.0	0.0	5.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
242	243	7.650903	AGAGATTTTGTCAATCTTTTTCAGTGC	59.349	33.333	0.00	0.00	37.14	4.40
326	336	9.859692	GCTTTGTTAATATATTGAGTTCCGTAC	57.140	33.333	8.28	0.00	0.00	3.67
426	436	4.652131	ATCCGGCCACCAAACGCA	62.652	61.111	2.24	0.00	0.00	5.24
460	472	1.372307	GGCCAGGCAGCACAAAAAT	59.628	52.632	15.19	0.00	0.00	1.82
476	488	9.287373	AGCACAAAAATTTGATTCCACAAATAT	57.713	25.926	12.54	0.00	45.71	1.28
477	489	9.332301	GCACAAAAATTTGATTCCACAAATATG	57.668	29.630	12.54	0.00	45.71	1.78
499	515	0.099968	CACCATTTGATCGCTGCCTG	59.900	55.000	0.00	0.00	0.00	4.85
527	543	0.983378	CCTAACCCTAGCAGCCACCT	60.983	60.000	0.00	0.00	0.00	4.00
618	634	1.079543	CCTTCCTCTGTGGTCGCTG	60.080	63.158	0.00	0.00	37.07	5.18
622	638	0.965866	TCCTCTGTGGTCGCTGTAGG	60.966	60.000	0.00	0.00	37.07	3.18
655	671	1.685224	GATTCTGGTGCAGGTCCCA	59.315	57.895	0.00	0.00	31.51	4.37
669	685	4.626287	GCAGGTCCCATTGATTTCTGACTA	60.626	45.833	0.00	0.00	0.00	2.59
755	771	8.348983	TCTTTCGATCCTTATTAATTGTCGTC	57.651	34.615	0.00	0.00	0.00	4.20
843	898	2.552315	TCATTTCCTCGTGTTTGCTTCC	59.448	45.455	0.00	0.00	0.00	3.46
850	905	0.385390	CGTGTTTGCTTCCCTGCTTT	59.615	50.000	0.00	0.00	0.00	3.51
896	959	9.418045	GCCTTGTTTTCTTAAGCATGTTTATTA	57.582	29.630	2.62	0.00	0.00	0.98
950	1015	1.858458	TCGTCACTTTTTGTCTCTGCG	59.142	47.619	0.00	0.00	0.00	5.18
1045	1114	1.304547	CCTCACCTGGGTCGTCTCT	60.305	63.158	0.00	0.00	0.00	3.10
1094	1163	0.806102	CGCCATGTCTACACCTTCGG	60.806	60.000	0.00	0.00	0.00	4.30
1132	1201	4.323477	GCGTGCCCACCCACTACA	62.323	66.667	0.00	0.00	33.60	2.74
1187	1256	3.439540	CCGGCGTTTGACCCCATG	61.440	66.667	6.01	0.00	0.00	3.66
1269	1338	2.750141	TCTGGCTTATCTACCGTCCT	57.250	50.000	0.00	0.00	0.00	3.85
1969	4646	2.925170	ACAGGCCCGAGTTGCTCT	60.925	61.111	0.00	0.00	0.00	4.09
1970	4647	2.435586	CAGGCCCGAGTTGCTCTG	60.436	66.667	0.00	0.00	0.00	3.35
1989	4666	5.805486	GCTCTGAGTTTTTCTTTTTCGGTTT	59.195	36.000	6.53	0.00	0.00	3.27
2115	4792	9.878599	AAAATTAACAAAGTGTCATCTAACTCG	57.121	29.630	0.00	0.00	0.00	4.18
2116	4793	4.992381	AACAAAGTGTCATCTAACTCGC	57.008	40.909	0.00	0.00	0.00	5.03
2117	4794	2.987149	ACAAAGTGTCATCTAACTCGCG	59.013	45.455	0.00	0.00	0.00	5.87
2131	4808	1.482621	CTCGCGTGCGCTATGTGATT	61.483	55.000	9.73	0.00	39.59	2.57
2179	4861	8.383175	ACTTCCTCTGAATTGGTTAGTCATTTA	58.617	33.333	0.00	0.00	0.00	1.40
2226	4908	4.036518	AGACAGGAATAGAGAGCCAACAT	58.963	43.478	0.00	0.00	0.00	2.71
2236	4918	3.979347	AGAGAGCCAACATAATCTCCCAT	59.021	43.478	0.00	0.00	39.19	4.00
2374	5056	6.990798	TGTTGATACAAAGCCAATGATGAAA	58.009	32.000	0.00	0.00	0.00	2.69
2375	5057	6.867816	TGTTGATACAAAGCCAATGATGAAAC	59.132	34.615	0.00	0.00	0.00	2.78
2376	5058	5.964758	TGATACAAAGCCAATGATGAAACC	58.035	37.500	0.00	0.00	0.00	3.27
2377	5059	5.716228	TGATACAAAGCCAATGATGAAACCT	59.284	36.000	0.00	0.00	0.00	3.50
2378	5060	6.889177	TGATACAAAGCCAATGATGAAACCTA	59.111	34.615	0.00	0.00	0.00	3.08
2379	5061	7.560991	TGATACAAAGCCAATGATGAAACCTAT	59.439	33.333	0.00	0.00	0.00	2.57
2380	5062	5.969423	ACAAAGCCAATGATGAAACCTATG	58.031	37.500	0.00	0.00	0.00	2.23
2381	5063	5.481473	ACAAAGCCAATGATGAAACCTATGT	59.519	36.000	0.00	0.00	0.00	2.29
2382	5064	5.587388	AAGCCAATGATGAAACCTATGTG	57.413	39.130	0.00	0.00	0.00	3.21
2383	5065	3.956199	AGCCAATGATGAAACCTATGTGG	59.044	43.478	0.00	0.00	42.93	4.17
2400	5082	7.916552	CCTATGTGGTAAGCAATACAAACTAC	58.083	38.462	2.63	0.00	36.14	2.73
2401	5083	7.769044	CCTATGTGGTAAGCAATACAAACTACT	59.231	37.037	2.63	0.00	36.14	2.57
2402	5084	7.611213	ATGTGGTAAGCAATACAAACTACTC	57.389	36.000	2.63	0.00	36.14	2.59
2403	5085	6.526526	TGTGGTAAGCAATACAAACTACTCA	58.473	36.000	2.63	0.00	36.14	3.41
2404	5086	6.993308	TGTGGTAAGCAATACAAACTACTCAA	59.007	34.615	2.63	0.00	36.14	3.02
2405	5087	7.499563	TGTGGTAAGCAATACAAACTACTCAAA	59.500	33.333	2.63	0.00	36.14	2.69
2406	5088	8.347035	GTGGTAAGCAATACAAACTACTCAAAA	58.653	33.333	2.63	0.00	36.14	2.44
2407	5089	8.904834	TGGTAAGCAATACAAACTACTCAAAAA	58.095	29.630	2.63	0.00	36.14	1.94
2408	5090	9.394477	GGTAAGCAATACAAACTACTCAAAAAG	57.606	33.333	2.63	0.00	36.14	2.27
2426	5108	7.429633	TCAAAAAGAAACCGAATAGCAAATCA	58.570	30.769	0.00	0.00	0.00	2.57
2475	5158	3.218453	TCTGGAAAACGCCTTCAATTGA	58.782	40.909	3.38	3.38	0.00	2.57
2526	5209	0.804989	GCGCACTTAGCAATTCCACT	59.195	50.000	0.30	0.00	46.13	4.00
2528	5211	2.729156	GCGCACTTAGCAATTCCACTTC	60.729	50.000	0.30	0.00	46.13	3.01
2533	5216	4.156739	CACTTAGCAATTCCACTTCTTCCC	59.843	45.833	0.00	0.00	0.00	3.97
2558	5241	4.989279	ATGTGCACCTACCAATGATTTC	57.011	40.909	15.69	0.00	0.00	2.17
2622	5305	7.490402	GCATAGAGAAGGAACAATTTTGATTGG	59.510	37.037	0.00	0.00	35.93	3.16
2640	5323	6.401394	TGATTGGATCATGCTATAGTGCTAC	58.599	40.000	0.84	0.00	33.59	3.58
2674	5357	3.742369	TCGCTCGTTAGATTTTCCGTTTT	59.258	39.130	0.00	0.00	0.00	2.43
2677	5360	5.388682	CGCTCGTTAGATTTTCCGTTTTACA	60.389	40.000	0.00	0.00	0.00	2.41
2708	5391	6.548251	TGGACTGACTATATAATGACCGTTCA	59.452	38.462	0.00	0.00	35.73	3.18
2713	5396	6.700081	TGACTATATAATGACCGTTCAGTTGC	59.300	38.462	0.00	0.00	34.35	4.17
2715	5398	7.272978	ACTATATAATGACCGTTCAGTTGCTT	58.727	34.615	0.00	0.00	34.35	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
242	243	3.012518	CTGATTACCTCAGCACCTTTGG	58.987	50.000	0.00	0.00	44.73	3.28
273	274	0.508641	CTTCGTCAAGTCGTTGCAGG	59.491	55.000	0.00	0.00	33.23	4.85
298	299	9.174166	ACGGAACTCAATATATTAACAAAGCTT	57.826	29.630	0.00	0.00	0.00	3.74
362	372	8.109705	TGCTCTAAATACTGCAGATTTCAAAA	57.890	30.769	23.35	6.25	0.00	2.44
367	377	8.206867	TGTAGATGCTCTAAATACTGCAGATTT	58.793	33.333	23.35	21.43	38.87	2.17
460	472	7.295322	TGGTGTTCATATTTGTGGAATCAAA	57.705	32.000	0.00	0.00	40.74	2.69
476	488	1.199789	GCAGCGATCAAATGGTGTTCA	59.800	47.619	0.00	0.00	36.05	3.18
477	489	1.468054	GGCAGCGATCAAATGGTGTTC	60.468	52.381	0.00	0.00	36.05	3.18
481	493	0.035152	TCAGGCAGCGATCAAATGGT	60.035	50.000	0.00	0.00	0.00	3.55
507	523	1.527370	GTGGCTGCTAGGGTTAGGG	59.473	63.158	0.00	0.00	0.00	3.53
527	543	0.106868	TGGCGACGAGATTAGGAGGA	60.107	55.000	0.00	0.00	0.00	3.71
631	647	1.452651	CTGCACCAGAATCCGCCAT	60.453	57.895	0.00	0.00	32.44	4.40
636	652	1.077429	GGGACCTGCACCAGAATCC	60.077	63.158	0.00	6.85	36.48	3.01
643	659	1.478105	GAAATCAATGGGACCTGCACC	59.522	52.381	0.00	0.00	0.00	5.01
655	671	8.599624	ATCAAATTGGGTAGTCAGAAATCAAT	57.400	30.769	0.00	0.00	0.00	2.57
774	790	4.607293	AAGACTGATGCTACAACTGTGA	57.393	40.909	0.00	0.00	0.00	3.58
843	898	1.071471	ACTGGACGGTGAAAGCAGG	59.929	57.895	0.00	0.00	0.00	4.85
896	959	7.402862	AGGCTCTTACCGGCAATATTAATATT	58.597	34.615	13.85	13.85	32.05	1.28
898	961	6.368779	AGGCTCTTACCGGCAATATTAATA	57.631	37.500	0.00	0.00	33.69	0.98
900	963	4.638304	GAGGCTCTTACCGGCAATATTAA	58.362	43.478	7.40	0.00	33.69	1.40
901	964	3.305813	CGAGGCTCTTACCGGCAATATTA	60.306	47.826	13.50	0.00	33.69	0.98
950	1015	3.004419	TGATCCGATCGATGTGGTAAGAC	59.996	47.826	18.66	0.00	0.00	3.01
1002	1071	2.480419	CCTGACACGAAGGAATTGACAC	59.520	50.000	0.00	0.00	36.91	3.67
1045	1114	4.030216	TGTGATTGGTACATGGCTAGAGA	58.970	43.478	0.00	0.00	39.30	3.10
1094	1163	1.387756	CGTTGTCGATGTAACCCGTTC	59.612	52.381	0.00	0.00	39.71	3.95
1132	1201	0.985490	GGAGGGCTTGGATCAGGAGT	60.985	60.000	0.00	0.00	0.00	3.85
1187	1256	2.202987	CTCTCACCAGGATGCGGC	60.203	66.667	0.00	0.00	31.97	6.53
1269	1338	2.498941	GGCCATCTGGATCGTCCGA	61.499	63.158	0.00	0.00	40.17	4.55
1337	1406	1.911269	TTGTAGGACAGCAGCGGGA	60.911	57.895	0.00	0.00	0.00	5.14
1644	4298	1.017177	GGCATTTCACCGACAGCGTA	61.017	55.000	0.00	0.00	35.23	4.42
2006	4683	9.817809	AGTGATCTTAACGCTCTTATATTTTGA	57.182	29.630	0.00	0.00	0.00	2.69
2049	4726	8.275187	TCCCTCCATAAAGAAATATAAGAGCA	57.725	34.615	0.00	0.00	0.00	4.26
2090	4767	8.015658	GCGAGTTAGATGACACTTTGTTAATTT	58.984	33.333	0.00	0.00	0.00	1.82
2095	4772	3.428870	CGCGAGTTAGATGACACTTTGTT	59.571	43.478	0.00	0.00	0.00	2.83
2098	4775	2.987149	CACGCGAGTTAGATGACACTTT	59.013	45.455	15.93	0.00	46.40	2.66
2099	4776	2.596452	CACGCGAGTTAGATGACACTT	58.404	47.619	15.93	0.00	46.40	3.16
2115	4792	0.315382	GTCAATCACATAGCGCACGC	60.315	55.000	11.47	6.99	42.33	5.34
2116	4793	0.301687	GGTCAATCACATAGCGCACG	59.698	55.000	11.47	0.00	0.00	5.34
2117	4794	0.657840	GGGTCAATCACATAGCGCAC	59.342	55.000	11.47	0.00	0.00	5.34
2188	4870	7.411486	TTCCTGTCTACAAAAACCATTTCAA	57.589	32.000	0.00	0.00	0.00	2.69
2191	4873	8.934023	TCTATTCCTGTCTACAAAAACCATTT	57.066	30.769	0.00	0.00	0.00	2.32
2249	4931	1.891178	TTCGAAGATCTACACGCGTG	58.109	50.000	35.99	35.99	35.04	5.34
2253	4935	4.441415	GGCATAGTTTCGAAGATCTACACG	59.559	45.833	0.00	3.06	35.04	4.49
2319	5001	5.584649	TCAAAATTAGATTCCACGTGGCTAG	59.415	40.000	30.25	12.40	34.44	3.42
2375	5057	7.769044	AGTAGTTTGTATTGCTTACCACATAGG	59.231	37.037	0.00	0.00	45.67	2.57
2376	5058	8.718102	AGTAGTTTGTATTGCTTACCACATAG	57.282	34.615	0.00	0.00	0.00	2.23
2377	5059	8.315482	TGAGTAGTTTGTATTGCTTACCACATA	58.685	33.333	0.00	0.00	0.00	2.29
2378	5060	7.165485	TGAGTAGTTTGTATTGCTTACCACAT	58.835	34.615	0.00	0.00	0.00	3.21
2379	5061	6.526526	TGAGTAGTTTGTATTGCTTACCACA	58.473	36.000	0.00	0.00	0.00	4.17
2380	5062	7.429636	TTGAGTAGTTTGTATTGCTTACCAC	57.570	36.000	0.00	0.00	0.00	4.16
2381	5063	8.453238	TTTTGAGTAGTTTGTATTGCTTACCA	57.547	30.769	0.00	0.00	0.00	3.25
2382	5064	9.394477	CTTTTTGAGTAGTTTGTATTGCTTACC	57.606	33.333	0.00	0.00	0.00	2.85
2386	5068	9.516314	GTTTCTTTTTGAGTAGTTTGTATTGCT	57.484	29.630	0.00	0.00	0.00	3.91
2387	5069	8.752254	GGTTTCTTTTTGAGTAGTTTGTATTGC	58.248	33.333	0.00	0.00	0.00	3.56
2388	5070	8.953990	CGGTTTCTTTTTGAGTAGTTTGTATTG	58.046	33.333	0.00	0.00	0.00	1.90
2389	5071	8.895737	TCGGTTTCTTTTTGAGTAGTTTGTATT	58.104	29.630	0.00	0.00	0.00	1.89
2390	5072	8.441312	TCGGTTTCTTTTTGAGTAGTTTGTAT	57.559	30.769	0.00	0.00	0.00	2.29
2391	5073	7.846644	TCGGTTTCTTTTTGAGTAGTTTGTA	57.153	32.000	0.00	0.00	0.00	2.41
2392	5074	6.746745	TCGGTTTCTTTTTGAGTAGTTTGT	57.253	33.333	0.00	0.00	0.00	2.83
2393	5075	9.382244	CTATTCGGTTTCTTTTTGAGTAGTTTG	57.618	33.333	0.00	0.00	0.00	2.93
2394	5076	8.074370	GCTATTCGGTTTCTTTTTGAGTAGTTT	58.926	33.333	0.00	0.00	0.00	2.66
2395	5077	7.227910	TGCTATTCGGTTTCTTTTTGAGTAGTT	59.772	33.333	0.00	0.00	0.00	2.24
2396	5078	6.708949	TGCTATTCGGTTTCTTTTTGAGTAGT	59.291	34.615	0.00	0.00	0.00	2.73
2397	5079	7.129109	TGCTATTCGGTTTCTTTTTGAGTAG	57.871	36.000	0.00	0.00	0.00	2.57
2398	5080	7.499321	TTGCTATTCGGTTTCTTTTTGAGTA	57.501	32.000	0.00	0.00	0.00	2.59
2399	5081	6.385649	TTGCTATTCGGTTTCTTTTTGAGT	57.614	33.333	0.00	0.00	0.00	3.41
2400	5082	7.594758	TGATTTGCTATTCGGTTTCTTTTTGAG	59.405	33.333	0.00	0.00	0.00	3.02
2401	5083	7.429633	TGATTTGCTATTCGGTTTCTTTTTGA	58.570	30.769	0.00	0.00	0.00	2.69
2402	5084	7.382218	ACTGATTTGCTATTCGGTTTCTTTTTG	59.618	33.333	0.00	0.00	0.00	2.44
2403	5085	7.433680	ACTGATTTGCTATTCGGTTTCTTTTT	58.566	30.769	0.00	0.00	0.00	1.94
2404	5086	6.981722	ACTGATTTGCTATTCGGTTTCTTTT	58.018	32.000	0.00	0.00	0.00	2.27
2405	5087	6.575162	ACTGATTTGCTATTCGGTTTCTTT	57.425	33.333	0.00	0.00	0.00	2.52
2406	5088	6.575162	AACTGATTTGCTATTCGGTTTCTT	57.425	33.333	10.26	0.00	38.05	2.52
2407	5089	6.575162	AAACTGATTTGCTATTCGGTTTCT	57.425	33.333	18.20	4.50	44.24	2.52
2408	5090	6.967199	CCTAAACTGATTTGCTATTCGGTTTC	59.033	38.462	23.71	0.00	44.24	2.78
2410	5092	5.163652	GCCTAAACTGATTTGCTATTCGGTT	60.164	40.000	10.26	10.26	41.93	4.44
2453	5136	3.634448	TCAATTGAAGGCGTTTTCCAGAA	59.366	39.130	5.45	0.00	0.00	3.02
2526	5209	1.985159	AGGTGCACATACAGGGAAGAA	59.015	47.619	20.43	0.00	0.00	2.52
2528	5211	2.420129	GGTAGGTGCACATACAGGGAAG	60.420	54.545	34.61	0.00	35.06	3.46
2533	5216	3.872696	TCATTGGTAGGTGCACATACAG	58.127	45.455	34.61	23.18	35.06	2.74
2558	5241	4.346734	AACTATGCTTGACATGCGAAAG	57.653	40.909	8.61	7.94	40.06	2.62
2622	5305	9.645059	TTAGAATTGTAGCACTATAGCATGATC	57.355	33.333	0.00	0.00	36.85	2.92
2664	5347	4.276431	GTCCACTCCATGTAAAACGGAAAA	59.724	41.667	0.00	0.00	0.00	2.29
2674	5357	9.025041	CATTATATAGTCAGTCCACTCCATGTA	57.975	37.037	0.00	0.00	0.00	2.29
2677	5360	7.179338	GGTCATTATATAGTCAGTCCACTCCAT	59.821	40.741	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.