Multiple sequence alignment - TraesCS7A01G058500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G058500 chr7A 100.000 2622 0 0 1 2622 28416365 28413744 0.000000e+00 4843.0
1 TraesCS7A01G058500 chr7A 90.366 519 14 8 1 493 665840299 665839791 0.000000e+00 649.0
2 TraesCS7A01G058500 chr7A 86.898 519 18 16 1 493 723422332 723421838 1.070000e-148 536.0
3 TraesCS7A01G058500 chr7A 75.284 1145 198 51 1000 2112 28256326 28255235 3.950000e-128 468.0
4 TraesCS7A01G058500 chr7D 81.230 1220 178 29 1000 2204 28005655 28004472 0.000000e+00 937.0
5 TraesCS7A01G058500 chr7D 91.709 591 38 8 2039 2622 28007054 28006468 0.000000e+00 809.0
6 TraesCS7A01G058500 chr7D 91.243 571 45 3 1477 2047 28008560 28007995 0.000000e+00 773.0
7 TraesCS7A01G058500 chr7D 75.779 1156 195 51 990 2112 27961856 27960753 3.010000e-139 505.0
8 TraesCS7A01G058500 chr7D 96.667 150 3 2 2474 2622 28004303 28004155 5.600000e-62 248.0
9 TraesCS7A01G058500 chr7D 82.508 303 24 14 508 807 28008947 28008671 3.370000e-59 239.0
10 TraesCS7A01G058500 chr1A 90.366 519 14 9 1 493 492175833 492175325 0.000000e+00 649.0
11 TraesCS7A01G058500 chr1A 90.366 519 14 9 1 493 492190550 492191058 0.000000e+00 649.0
12 TraesCS7A01G058500 chr6A 89.595 519 18 9 1 493 603375078 603374570 6.160000e-176 627.0
13 TraesCS7A01G058500 chr6A 87.885 520 18 12 1 494 48049158 48048658 1.050000e-158 569.0
14 TraesCS7A01G058500 chr2D 86.166 506 27 11 21 493 393084127 393084622 8.370000e-140 507.0
15 TraesCS7A01G058500 chr4A 74.870 1154 206 45 990 2112 703432782 703431682 5.150000e-122 448.0
16 TraesCS7A01G058500 chr6B 81.316 380 33 21 148 492 707799640 707800016 9.250000e-70 274.0
17 TraesCS7A01G058500 chr6B 85.616 146 17 4 1 146 707799462 707799603 1.630000e-32 150.0
18 TraesCS7A01G058500 chr3D 90.411 146 6 2 1 146 15310201 15310338 4.460000e-43 185.0
19 TraesCS7A01G058500 chr3D 94.253 87 5 0 409 495 15310668 15310754 1.640000e-27 134.0
20 TraesCS7A01G058500 chr3D 89.474 57 6 0 1650 1706 26314080 26314024 3.620000e-09 73.1
21 TraesCS7A01G058500 chr3B 76.048 167 24 8 1541 1706 44255244 44255395 3.620000e-09 73.1
22 TraesCS7A01G058500 chr3B 94.737 38 2 0 140 177 4320584 4320621 2.820000e-05 60.2
23 TraesCS7A01G058500 chr3B 97.059 34 0 1 211 244 13877264 13877232 3.650000e-04 56.5
24 TraesCS7A01G058500 chr3A 89.474 57 6 0 1650 1706 36316889 36316833 3.620000e-09 73.1
25 TraesCS7A01G058500 chr5A 100.000 32 0 0 149 180 396495887 396495918 2.820000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G058500 chr7A 28413744 28416365 2621 True 4843.0 4843 100.0000 1 2622 1 chr7A.!!$R2 2621
1 TraesCS7A01G058500 chr7A 665839791 665840299 508 True 649.0 649 90.3660 1 493 1 chr7A.!!$R3 492
2 TraesCS7A01G058500 chr7A 28255235 28256326 1091 True 468.0 468 75.2840 1000 2112 1 chr7A.!!$R1 1112
3 TraesCS7A01G058500 chr7D 28004155 28008947 4792 True 601.2 937 88.6714 508 2622 5 chr7D.!!$R2 2114
4 TraesCS7A01G058500 chr7D 27960753 27961856 1103 True 505.0 505 75.7790 990 2112 1 chr7D.!!$R1 1122
5 TraesCS7A01G058500 chr1A 492175325 492175833 508 True 649.0 649 90.3660 1 493 1 chr1A.!!$R1 492
6 TraesCS7A01G058500 chr1A 492190550 492191058 508 False 649.0 649 90.3660 1 493 1 chr1A.!!$F1 492
7 TraesCS7A01G058500 chr6A 603374570 603375078 508 True 627.0 627 89.5950 1 493 1 chr6A.!!$R2 492
8 TraesCS7A01G058500 chr6A 48048658 48049158 500 True 569.0 569 87.8850 1 494 1 chr6A.!!$R1 493
9 TraesCS7A01G058500 chr4A 703431682 703432782 1100 True 448.0 448 74.8700 990 2112 1 chr4A.!!$R1 1122
10 TraesCS7A01G058500 chr6B 707799462 707800016 554 False 212.0 274 83.4660 1 492 2 chr6B.!!$F1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 645 0.119358 GCCCTACCCCTCTATCCCAT 59.881 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 5411 0.036483 TGCTGGTGTGCGATACATGT 60.036 50.0 2.69 2.69 42.24 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
382 427 7.171678 CGATAAAAATGTAAGAGGCCCTAAGAG 59.828 40.741 0.00 0.00 0.00 2.85
396 467 5.305386 GGCCCTAAGAGCATTTATTGGAAAT 59.695 40.000 0.00 0.00 0.00 2.17
496 572 4.659172 CAGGACCGGCCCTGCAAA 62.659 66.667 24.90 0.00 46.16 3.68
497 573 4.660938 AGGACCGGCCCTGCAAAC 62.661 66.667 9.27 0.00 37.37 2.93
504 580 4.389576 GCCCTGCAAACGCGACAG 62.390 66.667 15.93 14.30 0.00 3.51
505 581 4.389576 CCCTGCAAACGCGACAGC 62.390 66.667 15.93 13.96 40.74 4.40
506 582 3.349006 CCTGCAAACGCGACAGCT 61.349 61.111 15.93 0.00 42.32 4.24
512 588 1.128692 GCAAACGCGACAGCTAATTCT 59.871 47.619 15.93 0.00 42.32 2.40
516 592 1.137086 ACGCGACAGCTAATTCTGGAT 59.863 47.619 15.93 0.00 42.32 3.41
534 610 8.893563 TTCTGGATGGAGGTTGTATAAATTTT 57.106 30.769 0.00 0.00 0.00 1.82
537 613 8.837099 TGGATGGAGGTTGTATAAATTTTGAT 57.163 30.769 0.00 0.00 0.00 2.57
568 645 0.119358 GCCCTACCCCTCTATCCCAT 59.881 60.000 0.00 0.00 0.00 4.00
626 704 7.347222 TGTGTGATATAGGATTTAGGAACCACT 59.653 37.037 0.00 0.00 0.00 4.00
651 729 5.246203 TCTCGGATCAACCAATATTCTAGGG 59.754 44.000 0.00 0.00 38.90 3.53
652 730 4.905456 TCGGATCAACCAATATTCTAGGGT 59.095 41.667 0.00 0.00 38.90 4.34
653 731 5.011738 TCGGATCAACCAATATTCTAGGGTC 59.988 44.000 0.00 0.00 38.90 4.46
654 732 5.561679 GGATCAACCAATATTCTAGGGTCC 58.438 45.833 0.00 0.00 38.79 4.46
655 733 5.310857 GGATCAACCAATATTCTAGGGTCCT 59.689 44.000 0.00 0.00 38.79 3.85
656 734 5.888982 TCAACCAATATTCTAGGGTCCTC 57.111 43.478 0.00 0.00 32.01 3.71
657 735 4.344102 TCAACCAATATTCTAGGGTCCTCG 59.656 45.833 0.00 0.00 32.01 4.63
658 736 2.633481 ACCAATATTCTAGGGTCCTCGC 59.367 50.000 0.00 0.00 0.00 5.03
659 737 2.632996 CCAATATTCTAGGGTCCTCGCA 59.367 50.000 0.00 0.00 0.00 5.10
660 738 3.071023 CCAATATTCTAGGGTCCTCGCAA 59.929 47.826 0.00 0.00 0.00 4.85
661 739 4.310769 CAATATTCTAGGGTCCTCGCAAG 58.689 47.826 0.00 0.00 0.00 4.01
720 798 7.326063 GCACATTATAAACAGGTGTTTCAAGAC 59.674 37.037 11.31 0.00 44.15 3.01
723 802 9.398170 CATTATAAACAGGTGTTTCAAGACAAG 57.602 33.333 11.31 0.00 44.15 3.16
727 806 3.374058 ACAGGTGTTTCAAGACAAGAACG 59.626 43.478 0.00 0.00 0.00 3.95
733 812 6.402226 GGTGTTTCAAGACAAGAACGATATCC 60.402 42.308 0.00 0.00 0.00 2.59
751 831 6.036517 CGATATCCTTTCTGGTGAAGACTTTG 59.963 42.308 0.00 0.00 33.46 2.77
812 913 2.430465 CCAAGTCATGACCTTGTCTGG 58.570 52.381 22.21 14.38 33.15 3.86
820 921 2.822215 ACCTTGTCTGGTCTGTCGT 58.178 52.632 0.00 0.00 34.86 4.34
825 926 4.710375 ACCTTGTCTGGTCTGTCGTAATAT 59.290 41.667 0.00 0.00 34.86 1.28
833 934 4.117685 GGTCTGTCGTAATATGTGGGTTC 58.882 47.826 0.00 0.00 0.00 3.62
848 949 6.187727 TGTGGGTTCTCTTATCAAAAGAGT 57.812 37.500 13.00 0.00 43.18 3.24
849 950 6.231211 TGTGGGTTCTCTTATCAAAAGAGTC 58.769 40.000 13.00 8.56 43.18 3.36
868 969 3.663136 AGTCTATCTATCTACCAGCCCCA 59.337 47.826 0.00 0.00 0.00 4.96
870 971 4.647399 GTCTATCTATCTACCAGCCCCATC 59.353 50.000 0.00 0.00 0.00 3.51
876 977 2.684943 TCTACCAGCCCCATCGAATTA 58.315 47.619 0.00 0.00 0.00 1.40
878 979 1.213296 ACCAGCCCCATCGAATTAGT 58.787 50.000 0.00 0.00 0.00 2.24
879 980 2.404559 ACCAGCCCCATCGAATTAGTA 58.595 47.619 0.00 0.00 0.00 1.82
880 981 2.368875 ACCAGCCCCATCGAATTAGTAG 59.631 50.000 0.00 0.00 0.00 2.57
881 982 2.417719 CAGCCCCATCGAATTAGTAGC 58.582 52.381 0.00 0.00 0.00 3.58
883 984 1.071699 GCCCCATCGAATTAGTAGCCA 59.928 52.381 0.00 0.00 0.00 4.75
885 986 3.139077 CCCCATCGAATTAGTAGCCAAC 58.861 50.000 0.00 0.00 0.00 3.77
895 996 7.395206 TCGAATTAGTAGCCAACTAGCCATATA 59.605 37.037 0.00 0.00 41.70 0.86
897 998 9.372369 GAATTAGTAGCCAACTAGCCATATAAG 57.628 37.037 0.00 0.00 41.70 1.73
900 1001 6.017192 AGTAGCCAACTAGCCATATAAGCTA 58.983 40.000 7.43 7.43 41.83 3.32
901 1002 5.153950 AGCCAACTAGCCATATAAGCTAC 57.846 43.478 4.22 0.00 41.83 3.58
903 1004 6.017192 AGCCAACTAGCCATATAAGCTACTA 58.983 40.000 4.22 0.00 41.83 1.82
907 1008 7.176865 CCAACTAGCCATATAAGCTACTAGACA 59.823 40.741 0.00 0.00 41.83 3.41
908 1009 7.690952 ACTAGCCATATAAGCTACTAGACAC 57.309 40.000 0.00 0.00 41.83 3.67
909 1010 5.630661 AGCCATATAAGCTACTAGACACG 57.369 43.478 0.00 0.00 39.29 4.49
910 1011 5.314529 AGCCATATAAGCTACTAGACACGA 58.685 41.667 0.00 0.00 39.29 4.35
912 1013 5.632959 CCATATAAGCTACTAGACACGAGC 58.367 45.833 0.00 0.00 35.07 5.03
936 3870 3.188492 CATGCTGATTTAATTTGCCGCA 58.812 40.909 0.00 0.00 0.00 5.69
937 3871 2.605030 TGCTGATTTAATTTGCCGCAC 58.395 42.857 0.00 0.00 0.00 5.34
938 3872 2.029560 TGCTGATTTAATTTGCCGCACA 60.030 40.909 0.00 0.00 0.00 4.57
939 3873 2.345341 GCTGATTTAATTTGCCGCACAC 59.655 45.455 0.00 0.00 0.00 3.82
940 3874 2.923020 CTGATTTAATTTGCCGCACACC 59.077 45.455 0.00 0.00 0.00 4.16
941 3875 2.297315 TGATTTAATTTGCCGCACACCA 59.703 40.909 0.00 0.00 0.00 4.17
942 3876 3.056250 TGATTTAATTTGCCGCACACCAT 60.056 39.130 0.00 0.00 0.00 3.55
944 3878 4.727507 TTTAATTTGCCGCACACCATAT 57.272 36.364 0.00 0.00 0.00 1.78
945 3879 5.836821 TTTAATTTGCCGCACACCATATA 57.163 34.783 0.00 0.00 0.00 0.86
946 3880 6.398234 TTTAATTTGCCGCACACCATATAT 57.602 33.333 0.00 0.00 0.00 0.86
948 3882 5.371115 AATTTGCCGCACACCATATATAC 57.629 39.130 0.00 0.00 0.00 1.47
950 3884 1.694696 TGCCGCACACCATATATACCA 59.305 47.619 0.00 0.00 0.00 3.25
954 3888 4.183865 CCGCACACCATATATACCATCTG 58.816 47.826 0.00 0.00 0.00 2.90
955 3889 3.618594 CGCACACCATATATACCATCTGC 59.381 47.826 0.00 0.00 0.00 4.26
956 3890 4.578871 GCACACCATATATACCATCTGCA 58.421 43.478 0.00 0.00 0.00 4.41
957 3891 5.003160 GCACACCATATATACCATCTGCAA 58.997 41.667 0.00 0.00 0.00 4.08
958 3892 5.473162 GCACACCATATATACCATCTGCAAA 59.527 40.000 0.00 0.00 0.00 3.68
960 3894 5.707298 ACACCATATATACCATCTGCAAAGC 59.293 40.000 0.00 0.00 0.00 3.51
961 3895 5.124457 CACCATATATACCATCTGCAAAGCC 59.876 44.000 0.00 0.00 0.00 4.35
962 3896 4.333649 CCATATATACCATCTGCAAAGCCG 59.666 45.833 0.00 0.00 0.00 5.52
963 3897 3.492102 ATATACCATCTGCAAAGCCGT 57.508 42.857 0.00 0.00 0.00 5.68
964 3898 4.617253 ATATACCATCTGCAAAGCCGTA 57.383 40.909 0.00 0.00 0.00 4.02
966 3900 1.019278 ACCATCTGCAAAGCCGTACG 61.019 55.000 8.69 8.69 0.00 3.67
967 3901 1.019278 CCATCTGCAAAGCCGTACGT 61.019 55.000 15.21 0.00 0.00 3.57
968 3902 1.635844 CATCTGCAAAGCCGTACGTA 58.364 50.000 15.21 0.00 0.00 3.57
969 3903 1.588404 CATCTGCAAAGCCGTACGTAG 59.412 52.381 15.21 0.29 0.00 3.51
971 3905 0.989890 CTGCAAAGCCGTACGTAGTC 59.010 55.000 15.21 0.32 43.93 2.59
973 3907 0.454957 GCAAAGCCGTACGTAGTCGA 60.455 55.000 15.21 0.00 43.93 4.20
974 3908 1.796617 GCAAAGCCGTACGTAGTCGAT 60.797 52.381 15.21 0.00 43.93 3.59
975 3909 2.107178 CAAAGCCGTACGTAGTCGATC 58.893 52.381 15.21 0.00 43.93 3.69
976 3910 0.302890 AAGCCGTACGTAGTCGATCG 59.697 55.000 15.21 9.36 43.93 3.69
977 3911 0.807667 AGCCGTACGTAGTCGATCGT 60.808 55.000 15.94 15.03 43.93 3.73
978 3912 0.382393 GCCGTACGTAGTCGATCGTC 60.382 60.000 15.94 9.91 43.93 4.20
979 3913 0.230769 CCGTACGTAGTCGATCGTCC 59.769 60.000 15.94 7.21 43.93 4.79
980 3914 0.230769 CGTACGTAGTCGATCGTCCC 59.769 60.000 15.94 4.59 43.93 4.46
981 3915 0.583917 GTACGTAGTCGATCGTCCCC 59.416 60.000 15.94 2.05 43.93 4.81
982 3916 0.177836 TACGTAGTCGATCGTCCCCA 59.822 55.000 15.94 0.00 43.93 4.96
983 3917 0.465097 ACGTAGTCGATCGTCCCCAT 60.465 55.000 15.94 0.00 29.74 4.00
984 3918 0.237761 CGTAGTCGATCGTCCCCATC 59.762 60.000 15.94 0.36 39.71 3.51
985 3919 0.597072 GTAGTCGATCGTCCCCATCC 59.403 60.000 15.94 0.00 0.00 3.51
986 3920 0.887836 TAGTCGATCGTCCCCATCCG 60.888 60.000 15.94 0.00 0.00 4.18
987 3921 2.124024 TCGATCGTCCCCATCCGT 60.124 61.111 15.94 0.00 0.00 4.69
988 3922 1.755395 TCGATCGTCCCCATCCGTT 60.755 57.895 15.94 0.00 0.00 4.44
989 3923 1.591594 CGATCGTCCCCATCCGTTG 60.592 63.158 7.03 0.00 0.00 4.10
990 3924 1.227556 GATCGTCCCCATCCGTTGG 60.228 63.158 0.00 0.00 46.00 3.77
991 3925 3.400599 ATCGTCCCCATCCGTTGGC 62.401 63.158 0.00 0.00 44.97 4.52
993 3927 3.728373 GTCCCCATCCGTTGGCCT 61.728 66.667 3.32 0.00 44.97 5.19
994 3928 3.727258 TCCCCATCCGTTGGCCTG 61.727 66.667 3.32 0.00 44.97 4.85
1032 3966 2.345244 CTCTTGTCTGCCCTGCGT 59.655 61.111 0.00 0.00 0.00 5.24
1066 4000 3.461773 AGATCACCGCCTCCACCG 61.462 66.667 0.00 0.00 0.00 4.94
1068 4002 3.310860 GATCACCGCCTCCACCGTT 62.311 63.158 0.00 0.00 0.00 4.44
1069 4003 3.605749 ATCACCGCCTCCACCGTTG 62.606 63.158 0.00 0.00 0.00 4.10
1095 4029 2.047274 CAAGCGACGGGTCCACAT 60.047 61.111 0.00 0.00 0.00 3.21
1101 4035 1.014044 CGACGGGTCCACATGTCTTG 61.014 60.000 0.00 0.00 0.00 3.02
1105 4039 0.035056 GGGTCCACATGTCTTGAGGG 60.035 60.000 0.00 0.00 36.77 4.30
1110 4044 1.208052 CCACATGTCTTGAGGGTCGAT 59.792 52.381 0.00 0.00 32.82 3.59
1112 4046 1.208052 ACATGTCTTGAGGGTCGATGG 59.792 52.381 0.00 0.00 0.00 3.51
1122 4056 3.849953 GTCGATGGGTTCACGCGC 61.850 66.667 5.73 0.00 0.00 6.86
1137 4071 4.821589 CGCGTCAGGGAGAAGGCC 62.822 72.222 0.00 0.00 0.00 5.19
1225 4159 4.424566 TGCTACCCGAACGGCGAC 62.425 66.667 16.62 6.32 44.57 5.19
1228 4162 3.271706 CTACCCGAACGGCGACACA 62.272 63.158 16.62 0.00 44.57 3.72
1263 4197 2.705127 GCCATCTCTCCCTCTTTCTCAT 59.295 50.000 0.00 0.00 0.00 2.90
1270 4204 1.623311 TCCCTCTTTCTCATGCACGAA 59.377 47.619 0.00 0.00 0.00 3.85
1272 4206 2.813754 CCCTCTTTCTCATGCACGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
1285 4219 0.745128 ACGAAAACCACGCCAAGACA 60.745 50.000 0.00 0.00 0.00 3.41
1318 4252 3.492313 GGCAAAGTTCAAGATAAGCGTG 58.508 45.455 0.00 0.00 0.00 5.34
1325 4259 0.924090 CAAGATAAGCGTGCTCGACC 59.076 55.000 13.13 0.00 39.71 4.79
1333 4267 4.008933 GTGCTCGACCAGGCCTGT 62.009 66.667 30.63 18.82 0.00 4.00
1347 4281 3.436001 CCTGTAAGCCGTACTGGTG 57.564 57.895 11.07 0.00 43.51 4.17
1349 4283 1.820519 CCTGTAAGCCGTACTGGTGTA 59.179 52.381 11.07 0.00 43.51 2.90
1350 4284 2.159282 CCTGTAAGCCGTACTGGTGTAG 60.159 54.545 11.07 0.00 43.51 2.74
1353 4287 3.192001 TGTAAGCCGTACTGGTGTAGAAG 59.808 47.826 5.79 0.00 41.21 2.85
1354 4288 0.531200 AGCCGTACTGGTGTAGAAGC 59.469 55.000 5.79 0.00 41.21 3.86
1355 4289 0.459759 GCCGTACTGGTGTAGAAGCC 60.460 60.000 5.79 0.00 41.21 4.35
1356 4290 0.892755 CCGTACTGGTGTAGAAGCCA 59.107 55.000 0.00 0.00 0.00 4.75
1372 4306 0.668535 GCCAAGAAGAACACCGCTTT 59.331 50.000 0.00 0.00 0.00 3.51
1374 4308 1.676006 CCAAGAAGAACACCGCTTTGT 59.324 47.619 0.00 0.00 0.00 2.83
1377 4311 2.639065 AGAAGAACACCGCTTTGTGAA 58.361 42.857 5.09 0.00 39.57 3.18
1379 4313 1.021968 AGAACACCGCTTTGTGAACC 58.978 50.000 5.09 0.00 39.57 3.62
1381 4315 0.738389 AACACCGCTTTGTGAACCAG 59.262 50.000 5.09 0.00 39.57 4.00
1405 4345 1.114627 GGGGCTGGGACAAATTCATC 58.885 55.000 0.00 0.00 38.70 2.92
1410 4350 3.259123 GGCTGGGACAAATTCATCAAACT 59.741 43.478 0.00 0.00 38.70 2.66
1435 4381 1.767681 GATCTGGACAGGGAGAAGCAT 59.232 52.381 0.00 0.00 0.00 3.79
1438 4384 0.907486 TGGACAGGGAGAAGCATCTG 59.093 55.000 0.00 0.00 35.54 2.90
1462 4408 2.262915 GACTGCCTGTCCGTCCTG 59.737 66.667 0.00 0.00 39.69 3.86
1507 4453 1.445410 GCGCACCGATGACTACACA 60.445 57.895 0.30 0.00 0.00 3.72
1509 4455 1.413767 CGCACCGATGACTACACAGC 61.414 60.000 0.00 0.00 0.00 4.40
1519 4465 0.035458 ACTACACAGCTGAGGTTGCC 59.965 55.000 23.35 0.00 0.00 4.52
1570 4531 1.204312 GTTCGACTTGCACGGCTTC 59.796 57.895 0.00 0.00 0.00 3.86
1573 4534 4.430423 GACTTGCACGGCTTCGCG 62.430 66.667 0.00 0.00 37.41 5.87
1596 4557 1.198094 TCGGAGGCCATCTGGAACAA 61.198 55.000 5.01 0.00 38.70 2.83
1599 4560 0.322816 GAGGCCATCTGGAACAAGCA 60.323 55.000 5.01 0.00 38.70 3.91
1619 4580 2.126071 CGGCGGACGTGATGAACT 60.126 61.111 0.00 0.00 37.93 3.01
1620 4581 2.444624 CGGCGGACGTGATGAACTG 61.445 63.158 0.00 0.00 37.93 3.16
1621 4582 1.080093 GGCGGACGTGATGAACTGA 60.080 57.895 0.00 0.00 0.00 3.41
1622 4583 0.460284 GGCGGACGTGATGAACTGAT 60.460 55.000 0.00 0.00 0.00 2.90
1623 4584 0.647410 GCGGACGTGATGAACTGATG 59.353 55.000 0.00 0.00 0.00 3.07
1624 4585 1.735700 GCGGACGTGATGAACTGATGA 60.736 52.381 0.00 0.00 0.00 2.92
1625 4586 2.814269 CGGACGTGATGAACTGATGAT 58.186 47.619 0.00 0.00 0.00 2.45
1626 4587 2.791560 CGGACGTGATGAACTGATGATC 59.208 50.000 0.00 0.00 0.00 2.92
1627 4588 3.126831 GGACGTGATGAACTGATGATCC 58.873 50.000 0.00 0.00 0.00 3.36
1628 4589 3.181471 GGACGTGATGAACTGATGATCCT 60.181 47.826 0.00 0.00 0.00 3.24
1629 4590 4.047822 GACGTGATGAACTGATGATCCTC 58.952 47.826 0.00 0.00 0.00 3.71
1630 4591 3.048501 CGTGATGAACTGATGATCCTCG 58.951 50.000 0.00 0.00 0.00 4.63
1631 4592 3.388308 GTGATGAACTGATGATCCTCGG 58.612 50.000 5.36 5.36 0.00 4.63
1634 4595 0.385751 GAACTGATGATCCTCGGCGA 59.614 55.000 10.14 10.14 0.00 5.54
1635 4596 0.387202 AACTGATGATCCTCGGCGAG 59.613 55.000 29.16 29.16 0.00 5.03
1738 4699 1.852067 AACCGGCGACAACATTGCTC 61.852 55.000 9.30 0.00 37.90 4.26
1744 4705 2.420022 GGCGACAACATTGCTCAACTAT 59.580 45.455 0.00 0.00 37.90 2.12
1749 4710 3.165890 CAACATTGCTCAACTATGCGTG 58.834 45.455 0.00 0.00 35.21 5.34
1809 4770 2.492484 GTTCATCTACACCGACTCACCT 59.508 50.000 0.00 0.00 0.00 4.00
1815 4776 1.606601 CACCGACTCACCTCCTCCA 60.607 63.158 0.00 0.00 0.00 3.86
1816 4777 1.304547 ACCGACTCACCTCCTCCAG 60.305 63.158 0.00 0.00 0.00 3.86
1818 4779 0.612174 CCGACTCACCTCCTCCAGAA 60.612 60.000 0.00 0.00 0.00 3.02
1819 4780 1.479709 CGACTCACCTCCTCCAGAAT 58.520 55.000 0.00 0.00 0.00 2.40
1821 4782 2.234908 CGACTCACCTCCTCCAGAATTT 59.765 50.000 0.00 0.00 0.00 1.82
1824 4785 3.848975 ACTCACCTCCTCCAGAATTTGAT 59.151 43.478 0.00 0.00 0.00 2.57
1827 4788 2.309755 ACCTCCTCCAGAATTTGATGCA 59.690 45.455 0.00 0.00 0.00 3.96
1831 4792 2.494471 CCTCCAGAATTTGATGCAGCAA 59.506 45.455 14.49 14.49 0.00 3.91
1834 4795 2.095110 CCAGAATTTGATGCAGCAACGA 60.095 45.455 18.52 3.86 0.00 3.85
1835 4796 3.428452 CCAGAATTTGATGCAGCAACGAT 60.428 43.478 18.52 6.46 0.00 3.73
1836 4797 3.546271 CAGAATTTGATGCAGCAACGATG 59.454 43.478 18.52 10.13 0.00 3.84
1838 4799 4.097437 AGAATTTGATGCAGCAACGATGAT 59.903 37.500 18.52 4.82 0.00 2.45
1840 4801 1.018910 TGATGCAGCAACGATGATGG 58.981 50.000 12.98 0.00 43.17 3.51
1842 4803 1.033202 ATGCAGCAACGATGATGGCA 61.033 50.000 12.98 11.04 43.17 4.92
1844 4805 1.371337 GCAGCAACGATGATGGCAGA 61.371 55.000 12.98 0.00 43.17 4.26
1845 4806 1.089112 CAGCAACGATGATGGCAGAA 58.911 50.000 2.61 0.00 39.28 3.02
1846 4807 1.089920 AGCAACGATGATGGCAGAAC 58.910 50.000 0.00 0.00 0.00 3.01
1847 4808 0.247814 GCAACGATGATGGCAGAACG 60.248 55.000 0.00 0.00 0.00 3.95
1848 4809 1.078709 CAACGATGATGGCAGAACGT 58.921 50.000 0.00 0.00 35.17 3.99
1905 4869 1.520342 GAAGCTCGCTTGCGAGGAT 60.520 57.895 35.32 18.98 36.26 3.24
2004 4968 0.324943 AGGAGGCGTGTATGCAGTTT 59.675 50.000 0.00 0.00 36.28 2.66
2112 5079 0.684535 TCCTCGTGAAGAACATGCCA 59.315 50.000 0.00 0.00 35.66 4.92
2119 5086 3.568538 GTGAAGAACATGCCAACACATC 58.431 45.455 0.00 0.00 0.00 3.06
2121 5088 3.827876 TGAAGAACATGCCAACACATCAT 59.172 39.130 0.00 0.00 0.00 2.45
2122 5089 3.861276 AGAACATGCCAACACATCATG 57.139 42.857 0.00 0.00 42.27 3.07
2128 5095 0.179145 GCCAACACATCATGAGCAGC 60.179 55.000 0.09 0.00 0.00 5.25
2129 5096 0.454600 CCAACACATCATGAGCAGCC 59.545 55.000 0.09 0.00 0.00 4.85
2130 5097 1.170442 CAACACATCATGAGCAGCCA 58.830 50.000 0.09 0.00 0.00 4.75
2131 5098 1.135489 CAACACATCATGAGCAGCCAC 60.135 52.381 0.09 0.00 0.00 5.01
2132 5099 0.679002 ACACATCATGAGCAGCCACC 60.679 55.000 0.09 0.00 0.00 4.61
2133 5100 0.678684 CACATCATGAGCAGCCACCA 60.679 55.000 0.09 0.00 0.00 4.17
2152 5119 1.672881 CAATTAGTACCAGCAGCCAGC 59.327 52.381 0.00 0.00 46.19 4.85
2164 5131 3.861569 GCAGCCAGCTATTTAGTTACG 57.138 47.619 0.00 0.00 41.15 3.18
2171 5138 4.814234 CCAGCTATTTAGTTACGCCAATCA 59.186 41.667 0.00 0.00 0.00 2.57
2173 5140 6.365839 CAGCTATTTAGTTACGCCAATCATG 58.634 40.000 0.00 0.00 0.00 3.07
2174 5141 6.202762 CAGCTATTTAGTTACGCCAATCATGA 59.797 38.462 0.00 0.00 0.00 3.07
2175 5142 6.425114 AGCTATTTAGTTACGCCAATCATGAG 59.575 38.462 0.09 0.00 0.00 2.90
2186 5153 3.755378 GCCAATCATGAGACAAAGTGAGT 59.245 43.478 0.09 0.00 0.00 3.41
2192 5159 6.507958 TCATGAGACAAAGTGAGTAGAGAG 57.492 41.667 0.00 0.00 0.00 3.20
2197 5164 8.046294 TGAGACAAAGTGAGTAGAGAGATTAC 57.954 38.462 0.00 0.00 0.00 1.89
2243 5210 8.404000 ACTAGATACGTACATTACTGGAACTTG 58.596 37.037 0.00 0.00 0.00 3.16
2244 5211 6.570692 AGATACGTACATTACTGGAACTTGG 58.429 40.000 0.00 0.00 0.00 3.61
2245 5212 3.934068 ACGTACATTACTGGAACTTGGG 58.066 45.455 0.00 0.00 0.00 4.12
2247 5214 4.181578 CGTACATTACTGGAACTTGGGAG 58.818 47.826 0.00 0.00 0.00 4.30
2248 5215 3.721087 ACATTACTGGAACTTGGGAGG 57.279 47.619 0.00 0.00 0.00 4.30
2250 5217 3.655777 ACATTACTGGAACTTGGGAGGAA 59.344 43.478 0.00 0.00 0.00 3.36
2258 5247 3.604582 GAACTTGGGAGGAAGTGATCAG 58.395 50.000 0.00 0.00 36.28 2.90
2259 5248 2.625639 ACTTGGGAGGAAGTGATCAGT 58.374 47.619 0.00 0.00 34.79 3.41
2271 5260 7.555087 AGGAAGTGATCAGTCAAGAGATTTAG 58.445 38.462 2.86 0.00 35.80 1.85
2273 5262 7.491048 GGAAGTGATCAGTCAAGAGATTTAGTC 59.509 40.741 2.86 0.00 35.80 2.59
2296 5285 9.243105 AGTCTCTTTATGAGGAGATAATAGAGC 57.757 37.037 2.55 0.00 42.86 4.09
2298 5287 9.821240 TCTCTTTATGAGGAGATAATAGAGCTT 57.179 33.333 0.00 0.00 42.86 3.74
2305 5294 9.692325 ATGAGGAGATAATAGAGCTTTTGTTTT 57.308 29.630 0.00 0.00 0.00 2.43
2313 5302 7.566858 AATAGAGCTTTTGTTTTAATGTGCG 57.433 32.000 0.00 0.00 0.00 5.34
2315 5304 4.739716 AGAGCTTTTGTTTTAATGTGCGTG 59.260 37.500 0.00 0.00 0.00 5.34
2316 5305 4.429108 AGCTTTTGTTTTAATGTGCGTGT 58.571 34.783 0.00 0.00 0.00 4.49
2318 5307 4.032331 GCTTTTGTTTTAATGTGCGTGTGT 59.968 37.500 0.00 0.00 0.00 3.72
2319 5308 5.441700 TTTTGTTTTAATGTGCGTGTGTG 57.558 34.783 0.00 0.00 0.00 3.82
2320 5309 3.766676 TGTTTTAATGTGCGTGTGTGT 57.233 38.095 0.00 0.00 0.00 3.72
2321 5310 3.686128 TGTTTTAATGTGCGTGTGTGTC 58.314 40.909 0.00 0.00 0.00 3.67
2322 5311 3.375610 TGTTTTAATGTGCGTGTGTGTCT 59.624 39.130 0.00 0.00 0.00 3.41
2323 5312 4.142578 TGTTTTAATGTGCGTGTGTGTCTT 60.143 37.500 0.00 0.00 0.00 3.01
2324 5313 5.064834 TGTTTTAATGTGCGTGTGTGTCTTA 59.935 36.000 0.00 0.00 0.00 2.10
2326 5315 3.878086 AATGTGCGTGTGTGTCTTAAG 57.122 42.857 0.00 0.00 0.00 1.85
2327 5316 0.934496 TGTGCGTGTGTGTCTTAAGC 59.066 50.000 0.00 0.00 0.00 3.09
2328 5317 1.217882 GTGCGTGTGTGTCTTAAGCT 58.782 50.000 0.00 0.00 0.00 3.74
2329 5318 1.597663 GTGCGTGTGTGTCTTAAGCTT 59.402 47.619 3.48 3.48 0.00 3.74
2330 5319 1.597195 TGCGTGTGTGTCTTAAGCTTG 59.403 47.619 9.86 0.00 0.00 4.01
2331 5320 1.660333 GCGTGTGTGTCTTAAGCTTGC 60.660 52.381 9.86 0.00 0.00 4.01
2332 5321 1.397190 CGTGTGTGTCTTAAGCTTGCG 60.397 52.381 9.86 0.00 0.00 4.85
2333 5322 1.864711 GTGTGTGTCTTAAGCTTGCGA 59.135 47.619 9.86 2.05 0.00 5.10
2334 5323 2.096713 GTGTGTGTCTTAAGCTTGCGAG 60.097 50.000 9.86 4.63 0.00 5.03
2344 5333 2.788535 GCTTGCGAGCTTGTTGAAC 58.211 52.632 19.25 0.00 45.65 3.18
2345 5334 0.661483 GCTTGCGAGCTTGTTGAACC 60.661 55.000 19.25 0.00 45.65 3.62
2346 5335 0.947244 CTTGCGAGCTTGTTGAACCT 59.053 50.000 2.14 0.00 0.00 3.50
2349 5338 2.566913 TGCGAGCTTGTTGAACCTTTA 58.433 42.857 2.14 0.00 0.00 1.85
2350 5339 2.946329 TGCGAGCTTGTTGAACCTTTAA 59.054 40.909 2.14 0.00 0.00 1.52
2351 5340 3.242936 TGCGAGCTTGTTGAACCTTTAAC 60.243 43.478 2.14 0.00 0.00 2.01
2352 5341 3.852205 GCGAGCTTGTTGAACCTTTAACC 60.852 47.826 2.14 0.00 0.00 2.85
2353 5342 3.314080 CGAGCTTGTTGAACCTTTAACCA 59.686 43.478 0.00 0.00 0.00 3.67
2354 5343 4.023193 CGAGCTTGTTGAACCTTTAACCAT 60.023 41.667 0.00 0.00 0.00 3.55
2355 5344 5.200368 AGCTTGTTGAACCTTTAACCATG 57.800 39.130 0.00 0.00 0.00 3.66
2356 5345 4.039124 AGCTTGTTGAACCTTTAACCATGG 59.961 41.667 11.19 11.19 0.00 3.66
2357 5346 4.799255 GCTTGTTGAACCTTTAACCATGGG 60.799 45.833 18.09 0.00 0.00 4.00
2358 5347 2.630580 TGTTGAACCTTTAACCATGGGC 59.369 45.455 18.09 0.00 0.00 5.36
2359 5348 2.630580 GTTGAACCTTTAACCATGGGCA 59.369 45.455 18.09 0.00 0.00 5.36
2360 5349 2.964209 TGAACCTTTAACCATGGGCAA 58.036 42.857 18.09 6.43 0.00 4.52
2361 5350 3.309296 TGAACCTTTAACCATGGGCAAA 58.691 40.909 18.09 14.00 0.00 3.68
2362 5351 3.906846 TGAACCTTTAACCATGGGCAAAT 59.093 39.130 18.09 0.90 0.00 2.32
2363 5352 4.349342 TGAACCTTTAACCATGGGCAAATT 59.651 37.500 18.09 7.64 0.00 1.82
2364 5353 4.991789 ACCTTTAACCATGGGCAAATTT 57.008 36.364 18.09 2.18 0.00 1.82
2365 5354 6.043243 TGAACCTTTAACCATGGGCAAATTTA 59.957 34.615 18.09 1.09 0.00 1.40
2366 5355 6.634889 ACCTTTAACCATGGGCAAATTTAT 57.365 33.333 18.09 0.00 0.00 1.40
2367 5356 7.026697 ACCTTTAACCATGGGCAAATTTATT 57.973 32.000 18.09 0.00 0.00 1.40
2368 5357 8.152023 ACCTTTAACCATGGGCAAATTTATTA 57.848 30.769 18.09 0.00 0.00 0.98
2369 5358 8.044309 ACCTTTAACCATGGGCAAATTTATTAC 58.956 33.333 18.09 0.00 0.00 1.89
2370 5359 8.043710 CCTTTAACCATGGGCAAATTTATTACA 58.956 33.333 18.09 0.00 0.00 2.41
2371 5360 9.612066 CTTTAACCATGGGCAAATTTATTACAT 57.388 29.630 18.09 0.00 0.00 2.29
2372 5361 9.965902 TTTAACCATGGGCAAATTTATTACATT 57.034 25.926 18.09 0.00 0.00 2.71
2375 5364 8.956533 ACCATGGGCAAATTTATTACATTAAC 57.043 30.769 18.09 0.00 0.00 2.01
2376 5365 7.990314 ACCATGGGCAAATTTATTACATTAACC 59.010 33.333 18.09 0.00 0.00 2.85
2377 5366 7.989741 CCATGGGCAAATTTATTACATTAACCA 59.010 33.333 2.85 0.00 0.00 3.67
2378 5367 9.558396 CATGGGCAAATTTATTACATTAACCAT 57.442 29.630 0.00 0.00 33.11 3.55
2379 5368 8.954950 TGGGCAAATTTATTACATTAACCATG 57.045 30.769 0.00 0.00 39.07 3.66
2380 5369 7.497249 TGGGCAAATTTATTACATTAACCATGC 59.503 33.333 0.00 0.00 36.14 4.06
2381 5370 7.497249 GGGCAAATTTATTACATTAACCATGCA 59.503 33.333 0.00 0.00 36.14 3.96
2382 5371 8.887717 GGCAAATTTATTACATTAACCATGCAA 58.112 29.630 0.00 0.00 36.14 4.08
2388 5377 9.988815 TTTATTACATTAACCATGCAAACTTGT 57.011 25.926 0.00 0.00 36.14 3.16
2389 5378 9.988815 TTATTACATTAACCATGCAAACTTGTT 57.011 25.926 0.00 0.00 36.14 2.83
2390 5379 7.706281 TTACATTAACCATGCAAACTTGTTG 57.294 32.000 0.00 0.00 36.14 3.33
2391 5380 5.669477 ACATTAACCATGCAAACTTGTTGT 58.331 33.333 0.00 0.00 36.14 3.32
2392 5381 6.112058 ACATTAACCATGCAAACTTGTTGTT 58.888 32.000 0.00 0.00 37.09 2.83
2393 5382 6.597280 ACATTAACCATGCAAACTTGTTGTTT 59.403 30.769 0.00 0.00 41.57 2.83
2394 5383 7.120432 ACATTAACCATGCAAACTTGTTGTTTT 59.880 29.630 0.00 0.00 39.97 2.43
2395 5384 8.607459 CATTAACCATGCAAACTTGTTGTTTTA 58.393 29.630 0.00 0.00 45.69 1.52
2396 5385 8.547967 TTAACCATGCAAACTTGTTGTTTTAA 57.452 26.923 0.00 0.00 45.69 1.52
2397 5386 6.415798 ACCATGCAAACTTGTTGTTTTAAC 57.584 33.333 0.00 0.00 45.69 2.01
2398 5387 5.352846 ACCATGCAAACTTGTTGTTTTAACC 59.647 36.000 0.00 0.00 45.69 2.85
2399 5388 5.584251 CCATGCAAACTTGTTGTTTTAACCT 59.416 36.000 0.00 0.00 45.69 3.50
2400 5389 6.093357 CCATGCAAACTTGTTGTTTTAACCTT 59.907 34.615 0.00 0.00 45.69 3.50
2401 5390 6.713792 TGCAAACTTGTTGTTTTAACCTTC 57.286 33.333 0.00 0.00 45.69 3.46
2402 5391 6.223852 TGCAAACTTGTTGTTTTAACCTTCA 58.776 32.000 0.00 0.00 45.69 3.02
2403 5392 6.876257 TGCAAACTTGTTGTTTTAACCTTCAT 59.124 30.769 0.00 0.00 45.69 2.57
2404 5393 7.148507 TGCAAACTTGTTGTTTTAACCTTCATG 60.149 33.333 0.00 0.00 45.69 3.07
2405 5394 7.148490 GCAAACTTGTTGTTTTAACCTTCATGT 60.148 33.333 0.00 0.00 45.69 3.21
2406 5395 8.379902 CAAACTTGTTGTTTTAACCTTCATGTC 58.620 33.333 0.00 0.00 45.69 3.06
2407 5396 7.404671 ACTTGTTGTTTTAACCTTCATGTCT 57.595 32.000 0.00 0.00 0.00 3.41
2408 5397 8.514330 ACTTGTTGTTTTAACCTTCATGTCTA 57.486 30.769 0.00 0.00 0.00 2.59
2409 5398 8.403236 ACTTGTTGTTTTAACCTTCATGTCTAC 58.597 33.333 0.00 0.00 0.00 2.59
2410 5399 7.867305 TGTTGTTTTAACCTTCATGTCTACA 57.133 32.000 0.00 0.00 0.00 2.74
2411 5400 7.699566 TGTTGTTTTAACCTTCATGTCTACAC 58.300 34.615 0.00 0.00 0.00 2.90
2412 5401 6.870971 TGTTTTAACCTTCATGTCTACACC 57.129 37.500 0.00 0.00 0.00 4.16
2413 5402 6.358178 TGTTTTAACCTTCATGTCTACACCA 58.642 36.000 0.00 0.00 0.00 4.17
2414 5403 6.261381 TGTTTTAACCTTCATGTCTACACCAC 59.739 38.462 0.00 0.00 0.00 4.16
2415 5404 3.418684 AACCTTCATGTCTACACCACC 57.581 47.619 0.00 0.00 0.00 4.61
2416 5405 2.334977 ACCTTCATGTCTACACCACCA 58.665 47.619 0.00 0.00 0.00 4.17
2417 5406 2.912956 ACCTTCATGTCTACACCACCAT 59.087 45.455 0.00 0.00 0.00 3.55
2418 5407 3.055094 ACCTTCATGTCTACACCACCATC 60.055 47.826 0.00 0.00 0.00 3.51
2419 5408 2.959507 TCATGTCTACACCACCATCG 57.040 50.000 0.00 0.00 0.00 3.84
2420 5409 2.452505 TCATGTCTACACCACCATCGA 58.547 47.619 0.00 0.00 0.00 3.59
2421 5410 2.829120 TCATGTCTACACCACCATCGAA 59.171 45.455 0.00 0.00 0.00 3.71
2422 5411 3.259625 TCATGTCTACACCACCATCGAAA 59.740 43.478 0.00 0.00 0.00 3.46
2423 5412 3.034721 TGTCTACACCACCATCGAAAC 57.965 47.619 0.00 0.00 0.00 2.78
2424 5413 2.365941 TGTCTACACCACCATCGAAACA 59.634 45.455 0.00 0.00 0.00 2.83
2425 5414 3.007506 TGTCTACACCACCATCGAAACAT 59.992 43.478 0.00 0.00 0.00 2.71
2426 5415 3.370978 GTCTACACCACCATCGAAACATG 59.629 47.826 0.00 0.00 0.00 3.21
2427 5416 2.270352 ACACCACCATCGAAACATGT 57.730 45.000 0.00 0.00 0.00 3.21
2428 5417 3.410631 ACACCACCATCGAAACATGTA 57.589 42.857 0.00 0.00 0.00 2.29
2429 5418 3.950397 ACACCACCATCGAAACATGTAT 58.050 40.909 0.00 0.00 0.00 2.29
2430 5419 3.938963 ACACCACCATCGAAACATGTATC 59.061 43.478 0.00 0.00 0.00 2.24
2431 5420 3.001228 CACCACCATCGAAACATGTATCG 59.999 47.826 0.00 0.00 40.31 2.92
2432 5421 2.032894 CCACCATCGAAACATGTATCGC 60.033 50.000 0.00 0.00 38.87 4.58
2433 5422 2.607180 CACCATCGAAACATGTATCGCA 59.393 45.455 0.00 0.00 38.87 5.10
2434 5423 2.607635 ACCATCGAAACATGTATCGCAC 59.392 45.455 0.00 0.00 38.87 5.34
2435 5424 2.607180 CCATCGAAACATGTATCGCACA 59.393 45.455 0.00 0.00 42.69 4.57
2436 5425 3.544048 CCATCGAAACATGTATCGCACAC 60.544 47.826 0.00 0.00 40.86 3.82
2437 5426 1.996898 TCGAAACATGTATCGCACACC 59.003 47.619 0.00 0.00 40.86 4.16
2438 5427 1.729517 CGAAACATGTATCGCACACCA 59.270 47.619 0.00 0.00 40.86 4.17
2439 5428 2.222796 CGAAACATGTATCGCACACCAG 60.223 50.000 0.00 0.00 40.86 4.00
2440 5429 1.086696 AACATGTATCGCACACCAGC 58.913 50.000 0.00 0.00 40.86 4.85
2441 5430 0.036483 ACATGTATCGCACACCAGCA 60.036 50.000 0.00 0.00 40.86 4.41
2442 5431 1.302366 CATGTATCGCACACCAGCAT 58.698 50.000 0.00 0.00 40.86 3.79
2443 5432 2.158971 ACATGTATCGCACACCAGCATA 60.159 45.455 0.00 0.00 40.86 3.14
2444 5433 2.682155 TGTATCGCACACCAGCATAA 57.318 45.000 0.00 0.00 30.04 1.90
2445 5434 2.979240 TGTATCGCACACCAGCATAAA 58.021 42.857 0.00 0.00 30.04 1.40
2446 5435 3.540617 TGTATCGCACACCAGCATAAAT 58.459 40.909 0.00 0.00 30.04 1.40
2447 5436 3.944650 TGTATCGCACACCAGCATAAATT 59.055 39.130 0.00 0.00 30.04 1.82
2448 5437 3.698029 ATCGCACACCAGCATAAATTC 57.302 42.857 0.00 0.00 0.00 2.17
2449 5438 2.710377 TCGCACACCAGCATAAATTCT 58.290 42.857 0.00 0.00 0.00 2.40
2450 5439 3.081061 TCGCACACCAGCATAAATTCTT 58.919 40.909 0.00 0.00 0.00 2.52
2451 5440 3.505680 TCGCACACCAGCATAAATTCTTT 59.494 39.130 0.00 0.00 0.00 2.52
2452 5441 4.022416 TCGCACACCAGCATAAATTCTTTT 60.022 37.500 0.00 0.00 0.00 2.27
2453 5442 4.324402 CGCACACCAGCATAAATTCTTTTC 59.676 41.667 0.00 0.00 0.00 2.29
2454 5443 5.473039 GCACACCAGCATAAATTCTTTTCT 58.527 37.500 0.00 0.00 0.00 2.52
2455 5444 5.928264 GCACACCAGCATAAATTCTTTTCTT 59.072 36.000 0.00 0.00 0.00 2.52
2456 5445 6.424812 GCACACCAGCATAAATTCTTTTCTTT 59.575 34.615 0.00 0.00 0.00 2.52
2457 5446 7.041848 GCACACCAGCATAAATTCTTTTCTTTT 60.042 33.333 0.00 0.00 0.00 2.27
2458 5447 8.829612 CACACCAGCATAAATTCTTTTCTTTTT 58.170 29.630 0.00 0.00 0.00 1.94
2572 5561 7.771927 AAAAATCCATCAGAGTCTTTCACAT 57.228 32.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 295 5.713861 CCCAACTCATCATTTTCTCTTCCTT 59.286 40.000 0.00 0.00 0.00 3.36
252 296 5.259632 CCCAACTCATCATTTTCTCTTCCT 58.740 41.667 0.00 0.00 0.00 3.36
328 372 5.678583 TGTTGATGCCAAAATTTTCTTCCA 58.321 33.333 0.00 0.00 33.49 3.53
494 570 1.732259 CCAGAATTAGCTGTCGCGTTT 59.268 47.619 5.77 0.00 42.32 3.60
495 571 1.067142 TCCAGAATTAGCTGTCGCGTT 60.067 47.619 5.77 0.00 42.32 4.84
496 572 0.530744 TCCAGAATTAGCTGTCGCGT 59.469 50.000 5.77 0.00 42.32 6.01
497 573 1.524355 CATCCAGAATTAGCTGTCGCG 59.476 52.381 0.00 0.00 42.32 5.87
498 574 1.869767 CCATCCAGAATTAGCTGTCGC 59.130 52.381 0.00 0.00 34.06 5.19
499 575 3.388308 CTCCATCCAGAATTAGCTGTCG 58.612 50.000 0.00 0.00 34.06 4.35
500 576 3.135530 ACCTCCATCCAGAATTAGCTGTC 59.864 47.826 0.00 0.00 34.06 3.51
501 577 3.118531 ACCTCCATCCAGAATTAGCTGT 58.881 45.455 0.00 0.00 34.06 4.40
502 578 3.853355 ACCTCCATCCAGAATTAGCTG 57.147 47.619 0.00 0.00 35.66 4.24
503 579 3.525199 ACAACCTCCATCCAGAATTAGCT 59.475 43.478 0.00 0.00 0.00 3.32
504 580 3.891049 ACAACCTCCATCCAGAATTAGC 58.109 45.455 0.00 0.00 0.00 3.09
505 581 9.799106 ATTTATACAACCTCCATCCAGAATTAG 57.201 33.333 0.00 0.00 0.00 1.73
512 588 8.837099 ATCAAAATTTATACAACCTCCATCCA 57.163 30.769 0.00 0.00 0.00 3.41
534 610 5.423931 GGGGTAGGGCTGAAATTAAAAATCA 59.576 40.000 0.00 0.00 0.00 2.57
537 613 5.018374 AGGGGTAGGGCTGAAATTAAAAA 57.982 39.130 0.00 0.00 0.00 1.94
552 629 2.826488 CTCCATGGGATAGAGGGGTAG 58.174 57.143 13.02 0.00 0.00 3.18
555 632 1.548357 CGCTCCATGGGATAGAGGGG 61.548 65.000 13.02 0.00 37.04 4.79
568 645 3.421687 CTCGCATGCTCTCGCTCCA 62.422 63.158 17.13 0.00 36.97 3.86
583 660 4.053983 CACACATATGGACTGGAATCTCG 58.946 47.826 7.80 0.00 0.00 4.04
626 704 6.239600 CCCTAGAATATTGGTTGATCCGAGAA 60.240 42.308 0.00 0.00 39.52 2.87
669 747 9.444600 GCACCGAAATATTTTATCCCTAGAATA 57.555 33.333 1.43 0.00 0.00 1.75
670 748 7.942341 TGCACCGAAATATTTTATCCCTAGAAT 59.058 33.333 1.43 0.00 0.00 2.40
671 749 7.227910 GTGCACCGAAATATTTTATCCCTAGAA 59.772 37.037 5.22 0.00 0.00 2.10
672 750 6.708949 GTGCACCGAAATATTTTATCCCTAGA 59.291 38.462 5.22 0.00 0.00 2.43
673 751 6.485313 TGTGCACCGAAATATTTTATCCCTAG 59.515 38.462 15.69 0.00 0.00 3.02
674 752 6.358178 TGTGCACCGAAATATTTTATCCCTA 58.642 36.000 15.69 0.00 0.00 3.53
675 753 5.197451 TGTGCACCGAAATATTTTATCCCT 58.803 37.500 15.69 0.00 0.00 4.20
676 754 5.508200 TGTGCACCGAAATATTTTATCCC 57.492 39.130 15.69 0.00 0.00 3.85
690 768 3.438781 ACACCTGTTTATAATGTGCACCG 59.561 43.478 15.69 0.00 0.00 4.94
691 769 5.385509 AACACCTGTTTATAATGTGCACC 57.614 39.130 15.69 0.00 33.93 5.01
714 792 6.813649 CAGAAAGGATATCGTTCTTGTCTTGA 59.186 38.462 10.89 0.00 41.16 3.02
720 798 5.419542 TCACCAGAAAGGATATCGTTCTTG 58.580 41.667 10.89 12.31 41.16 3.02
723 802 5.520649 GTCTTCACCAGAAAGGATATCGTTC 59.479 44.000 10.89 9.78 41.22 3.95
727 806 6.881602 ACAAAGTCTTCACCAGAAAGGATATC 59.118 38.462 0.00 0.00 41.22 1.63
733 812 5.818136 TCAACAAAGTCTTCACCAGAAAG 57.182 39.130 0.00 0.00 31.28 2.62
773 853 3.030291 TGGGCTACAATTAATTGGCAGG 58.970 45.455 27.43 16.35 41.96 4.85
812 913 5.007385 AGAACCCACATATTACGACAGAC 57.993 43.478 0.00 0.00 0.00 3.51
825 926 6.043243 AGACTCTTTTGATAAGAGAACCCACA 59.957 38.462 17.56 0.00 44.96 4.17
848 949 4.628959 CGATGGGGCTGGTAGATAGATAGA 60.629 50.000 0.00 0.00 0.00 1.98
849 950 3.634448 CGATGGGGCTGGTAGATAGATAG 59.366 52.174 0.00 0.00 0.00 2.08
868 969 4.344102 TGGCTAGTTGGCTACTAATTCGAT 59.656 41.667 9.96 0.00 38.84 3.59
870 971 4.054780 TGGCTAGTTGGCTACTAATTCG 57.945 45.455 9.96 0.36 38.84 3.34
876 977 4.841246 AGCTTATATGGCTAGTTGGCTACT 59.159 41.667 6.84 6.84 42.34 2.57
878 979 6.017192 AGTAGCTTATATGGCTAGTTGGCTA 58.983 40.000 10.99 0.00 41.46 3.93
879 980 4.841246 AGTAGCTTATATGGCTAGTTGGCT 59.159 41.667 10.99 0.00 41.46 4.75
880 981 5.153950 AGTAGCTTATATGGCTAGTTGGC 57.846 43.478 10.99 0.00 41.46 4.52
881 982 7.176865 TGTCTAGTAGCTTATATGGCTAGTTGG 59.823 40.741 18.45 13.85 41.46 3.77
883 984 7.094720 CGTGTCTAGTAGCTTATATGGCTAGTT 60.095 40.741 18.45 10.82 41.46 2.24
885 986 6.594547 TCGTGTCTAGTAGCTTATATGGCTAG 59.405 42.308 10.99 4.34 42.03 3.42
895 996 1.133407 GCAGCTCGTGTCTAGTAGCTT 59.867 52.381 0.00 0.00 42.52 3.74
897 998 0.452184 TGCAGCTCGTGTCTAGTAGC 59.548 55.000 0.00 0.00 35.16 3.58
900 1001 0.459237 GCATGCAGCTCGTGTCTAGT 60.459 55.000 14.21 0.00 41.15 2.57
901 1002 2.295692 GCATGCAGCTCGTGTCTAG 58.704 57.895 14.21 0.00 41.15 2.43
912 1013 3.244345 CGGCAAATTAAATCAGCATGCAG 59.756 43.478 21.98 12.90 34.76 4.41
913 1014 3.188492 CGGCAAATTAAATCAGCATGCA 58.812 40.909 21.98 0.00 34.76 3.96
920 3854 2.297315 TGGTGTGCGGCAAATTAAATCA 59.703 40.909 3.23 0.00 0.00 2.57
928 3862 3.142951 GGTATATATGGTGTGCGGCAAA 58.857 45.455 3.23 0.00 0.00 3.68
930 3864 1.694696 TGGTATATATGGTGTGCGGCA 59.305 47.619 0.00 0.00 0.00 5.69
936 3870 5.707298 GCTTTGCAGATGGTATATATGGTGT 59.293 40.000 0.00 0.00 0.00 4.16
937 3871 5.124457 GGCTTTGCAGATGGTATATATGGTG 59.876 44.000 0.00 0.00 0.00 4.17
938 3872 5.256474 GGCTTTGCAGATGGTATATATGGT 58.744 41.667 0.00 0.00 0.00 3.55
939 3873 4.333649 CGGCTTTGCAGATGGTATATATGG 59.666 45.833 0.00 0.00 0.00 2.74
940 3874 4.937620 ACGGCTTTGCAGATGGTATATATG 59.062 41.667 0.00 0.00 0.00 1.78
941 3875 5.165961 ACGGCTTTGCAGATGGTATATAT 57.834 39.130 0.00 0.00 0.00 0.86
942 3876 4.617253 ACGGCTTTGCAGATGGTATATA 57.383 40.909 0.00 0.00 0.00 0.86
944 3878 3.724374 GTACGGCTTTGCAGATGGTATA 58.276 45.455 0.00 0.00 0.00 1.47
945 3879 2.561569 GTACGGCTTTGCAGATGGTAT 58.438 47.619 0.00 0.00 0.00 2.73
946 3880 1.737696 CGTACGGCTTTGCAGATGGTA 60.738 52.381 7.57 0.00 0.00 3.25
948 3882 1.019278 ACGTACGGCTTTGCAGATGG 61.019 55.000 21.06 0.00 0.00 3.51
950 3884 1.203994 ACTACGTACGGCTTTGCAGAT 59.796 47.619 21.06 0.00 0.00 2.90
954 3888 0.454957 TCGACTACGTACGGCTTTGC 60.455 55.000 21.06 2.80 40.69 3.68
955 3889 2.107178 GATCGACTACGTACGGCTTTG 58.893 52.381 21.06 6.48 40.69 2.77
956 3890 1.267732 CGATCGACTACGTACGGCTTT 60.268 52.381 21.06 0.09 40.69 3.51
957 3891 0.302890 CGATCGACTACGTACGGCTT 59.697 55.000 21.06 1.97 40.69 4.35
958 3892 0.807667 ACGATCGACTACGTACGGCT 60.808 55.000 24.34 1.34 40.92 5.52
960 3894 0.230769 GGACGATCGACTACGTACGG 59.769 60.000 24.34 5.00 42.74 4.02
961 3895 0.230769 GGGACGATCGACTACGTACG 59.769 60.000 24.34 15.01 43.23 3.67
962 3896 0.583917 GGGGACGATCGACTACGTAC 59.416 60.000 24.34 13.15 42.74 3.67
963 3897 0.177836 TGGGGACGATCGACTACGTA 59.822 55.000 24.34 0.00 42.74 3.57
964 3898 0.465097 ATGGGGACGATCGACTACGT 60.465 55.000 24.34 11.05 45.32 3.57
966 3900 0.597072 GGATGGGGACGATCGACTAC 59.403 60.000 24.34 12.92 0.00 2.73
967 3901 0.887836 CGGATGGGGACGATCGACTA 60.888 60.000 24.34 9.81 0.00 2.59
968 3902 2.194212 CGGATGGGGACGATCGACT 61.194 63.158 24.34 0.00 0.00 4.18
969 3903 2.012902 AACGGATGGGGACGATCGAC 62.013 60.000 24.34 16.38 0.00 4.20
971 3905 1.591594 CAACGGATGGGGACGATCG 60.592 63.158 14.88 14.88 0.00 3.69
973 3907 2.908015 CCAACGGATGGGGACGAT 59.092 61.111 0.00 0.00 46.27 3.73
1005 3939 3.173240 GACAAGAGCGCGGACGTC 61.173 66.667 8.83 7.13 42.83 4.34
1080 4014 3.296709 GACATGTGGACCCGTCGCT 62.297 63.158 1.15 0.00 0.00 4.93
1089 4023 0.608130 CGACCCTCAAGACATGTGGA 59.392 55.000 1.15 0.00 43.96 4.02
1090 4024 0.608130 TCGACCCTCAAGACATGTGG 59.392 55.000 1.15 0.00 41.46 4.17
1092 4026 1.208052 CCATCGACCCTCAAGACATGT 59.792 52.381 0.00 0.00 0.00 3.21
1095 4029 0.544357 ACCCATCGACCCTCAAGACA 60.544 55.000 0.00 0.00 0.00 3.41
1101 4035 1.153628 CGTGAACCCATCGACCCTC 60.154 63.158 0.00 0.00 0.00 4.30
1105 4039 3.849953 GCGCGTGAACCCATCGAC 61.850 66.667 8.43 0.00 0.00 4.20
1122 4056 4.821589 GCGGCCTTCTCCCTGACG 62.822 72.222 0.00 0.00 0.00 4.35
1182 4116 2.643272 GCCAGTCGTGAGTCGTGA 59.357 61.111 0.00 0.00 40.80 4.35
1183 4117 2.801162 CGCCAGTCGTGAGTCGTG 60.801 66.667 0.00 0.00 40.80 4.35
1206 4140 4.728102 CGCCGTTCGGGTAGCACA 62.728 66.667 13.16 0.00 38.44 4.57
1225 4159 2.581354 CCCTCGGCCTTCTCTGTG 59.419 66.667 0.00 0.00 0.00 3.66
1247 4181 2.738000 CGTGCATGAGAAAGAGGGAGAG 60.738 54.545 0.00 0.00 0.00 3.20
1263 4197 2.329678 CTTGGCGTGGTTTTCGTGCA 62.330 55.000 0.00 0.00 0.00 4.57
1270 4204 2.193536 GCCTGTCTTGGCGTGGTTT 61.194 57.895 0.00 0.00 43.74 3.27
1318 4252 1.153549 CTTACAGGCCTGGTCGAGC 60.154 63.158 35.42 7.89 34.19 5.03
1333 4267 2.165030 GCTTCTACACCAGTACGGCTTA 59.835 50.000 4.00 0.00 39.03 3.09
1341 4275 2.972713 TCTTCTTGGCTTCTACACCAGT 59.027 45.455 0.00 0.00 37.24 4.00
1342 4276 3.685139 TCTTCTTGGCTTCTACACCAG 57.315 47.619 0.00 0.00 37.24 4.00
1345 4279 3.498777 GGTGTTCTTCTTGGCTTCTACAC 59.501 47.826 0.00 0.00 35.21 2.90
1346 4280 3.740115 GGTGTTCTTCTTGGCTTCTACA 58.260 45.455 0.00 0.00 0.00 2.74
1347 4281 2.737252 CGGTGTTCTTCTTGGCTTCTAC 59.263 50.000 0.00 0.00 0.00 2.59
1349 4283 1.884235 CGGTGTTCTTCTTGGCTTCT 58.116 50.000 0.00 0.00 0.00 2.85
1350 4284 0.238553 GCGGTGTTCTTCTTGGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
1353 4287 0.668535 AAAGCGGTGTTCTTCTTGGC 59.331 50.000 0.00 0.00 0.00 4.52
1354 4288 1.676006 ACAAAGCGGTGTTCTTCTTGG 59.324 47.619 0.00 0.00 0.00 3.61
1355 4289 2.354510 TCACAAAGCGGTGTTCTTCTTG 59.645 45.455 6.19 0.00 39.76 3.02
1356 4290 2.639065 TCACAAAGCGGTGTTCTTCTT 58.361 42.857 6.19 0.00 39.76 2.52
1372 4306 2.931107 CCCCAACCCTGGTTCACA 59.069 61.111 0.00 0.00 41.72 3.58
1374 4308 2.780924 AGCCCCAACCCTGGTTCA 60.781 61.111 0.00 0.00 41.72 3.18
1379 4313 4.366684 GTCCCAGCCCCAACCCTG 62.367 72.222 0.00 0.00 0.00 4.45
1381 4315 2.746947 ATTTGTCCCAGCCCCAACCC 62.747 60.000 0.00 0.00 0.00 4.11
1394 4334 9.125906 CAGATCTTCAAGTTTGATGAATTTGTC 57.874 33.333 12.58 7.13 42.31 3.18
1405 4345 3.755378 CCCTGTCCAGATCTTCAAGTTTG 59.245 47.826 0.00 0.00 0.00 2.93
1410 4350 3.190383 TCTCCCTGTCCAGATCTTCAA 57.810 47.619 0.00 0.00 0.00 2.69
1435 4381 0.827925 ACAGGCAGTCGTCCTTCAGA 60.828 55.000 0.00 0.00 0.00 3.27
1438 4384 4.580835 GACAGGCAGTCGTCCTTC 57.419 61.111 0.00 0.00 37.53 3.46
1498 4444 1.270305 GCAACCTCAGCTGTGTAGTCA 60.270 52.381 14.67 0.00 0.00 3.41
1573 4534 2.420890 CAGATGGCCTCCGAGAGC 59.579 66.667 3.32 0.00 0.00 4.09
1577 4538 1.198094 TTGTTCCAGATGGCCTCCGA 61.198 55.000 3.32 0.00 34.44 4.55
1585 4546 1.651240 CCGCCTGCTTGTTCCAGATG 61.651 60.000 0.00 0.00 32.03 2.90
1586 4547 1.377725 CCGCCTGCTTGTTCCAGAT 60.378 57.895 0.00 0.00 32.03 2.90
1617 4578 2.037053 CTCGCCGAGGATCATCAGT 58.963 57.895 6.13 0.00 33.17 3.41
1627 4588 1.597302 TCTATCCGTCCTCGCCGAG 60.597 63.158 7.25 7.25 35.54 4.63
1628 4589 1.890979 GTCTATCCGTCCTCGCCGA 60.891 63.158 0.00 0.00 35.54 5.54
1629 4590 2.638154 GTCTATCCGTCCTCGCCG 59.362 66.667 0.00 0.00 35.54 6.46
1630 4591 1.235948 ATCGTCTATCCGTCCTCGCC 61.236 60.000 0.00 0.00 35.54 5.54
1631 4592 0.166379 GATCGTCTATCCGTCCTCGC 59.834 60.000 0.00 0.00 35.54 5.03
1634 4595 0.534427 TGCGATCGTCTATCCGTCCT 60.534 55.000 17.81 0.00 0.00 3.85
1635 4596 0.110147 CTGCGATCGTCTATCCGTCC 60.110 60.000 17.81 0.00 0.00 4.79
1641 4602 1.658717 GTGCGCTGCGATCGTCTAT 60.659 57.895 28.07 0.00 0.00 1.98
1642 4603 2.277949 GTGCGCTGCGATCGTCTA 60.278 61.111 28.07 2.87 0.00 2.59
1680 4641 2.996444 CGCCTTAAATACGGGGGAC 58.004 57.895 0.00 0.00 35.47 4.46
1717 4678 1.945522 CAATGTTGTCGCCGGTTGA 59.054 52.632 1.90 0.00 0.00 3.18
1738 4699 1.089481 ATGCCGTCCACGCATAGTTG 61.089 55.000 7.09 0.00 35.52 3.16
1779 4740 2.234908 GGTGTAGATGAACCTGAGCAGT 59.765 50.000 0.00 0.00 33.40 4.40
1809 4770 2.291089 TGCTGCATCAAATTCTGGAGGA 60.291 45.455 0.00 1.78 32.10 3.71
1815 4776 3.441222 TCATCGTTGCTGCATCAAATTCT 59.559 39.130 4.23 0.00 0.00 2.40
1816 4777 3.761657 TCATCGTTGCTGCATCAAATTC 58.238 40.909 4.23 0.00 0.00 2.17
1818 4779 3.490249 CCATCATCGTTGCTGCATCAAAT 60.490 43.478 4.23 0.00 0.00 2.32
1819 4780 2.159352 CCATCATCGTTGCTGCATCAAA 60.159 45.455 4.23 0.00 0.00 2.69
1821 4782 1.018910 CCATCATCGTTGCTGCATCA 58.981 50.000 1.84 0.00 0.00 3.07
1824 4785 1.650314 CTGCCATCATCGTTGCTGCA 61.650 55.000 0.00 0.00 0.00 4.41
1827 4788 1.089920 GTTCTGCCATCATCGTTGCT 58.910 50.000 0.00 0.00 0.00 3.91
1831 4792 0.532573 AGACGTTCTGCCATCATCGT 59.467 50.000 0.00 0.00 0.00 3.73
1834 4795 1.137872 GAGGAGACGTTCTGCCATCAT 59.862 52.381 0.00 0.00 35.21 2.45
1835 4796 0.532573 GAGGAGACGTTCTGCCATCA 59.467 55.000 0.00 0.00 35.21 3.07
1836 4797 0.526524 CGAGGAGACGTTCTGCCATC 60.527 60.000 0.00 0.00 35.21 3.51
1838 4799 1.901948 ACGAGGAGACGTTCTGCCA 60.902 57.895 0.00 0.00 44.14 4.92
1840 4801 1.444553 CCACGAGGAGACGTTCTGC 60.445 63.158 0.00 0.00 44.76 4.26
1842 4803 2.963371 GCCACGAGGAGACGTTCT 59.037 61.111 1.86 0.00 44.76 3.01
1844 4805 4.052229 CCGCCACGAGGAGACGTT 62.052 66.667 1.86 0.00 44.76 3.99
1847 4808 4.803426 CTGCCGCCACGAGGAGAC 62.803 72.222 1.86 0.00 36.74 3.36
1863 4827 2.238084 TGTCCAGCTCATACCTGTCT 57.762 50.000 0.00 0.00 0.00 3.41
1911 4875 3.069300 AGCTCGTGTCTATGATCTTGCAT 59.931 43.478 0.00 0.00 0.00 3.96
1985 4949 0.324943 AAACTGCATACACGCCTCCT 59.675 50.000 0.00 0.00 0.00 3.69
2004 4968 5.458451 TCAGGTTATCAGGAGAAGAGAGA 57.542 43.478 0.00 0.00 0.00 3.10
2112 5079 1.171308 GTGGCTGCTCATGATGTGTT 58.829 50.000 0.00 0.00 0.00 3.32
2119 5086 2.372264 ACTAATTGGTGGCTGCTCATG 58.628 47.619 0.00 0.00 0.00 3.07
2121 5088 2.355716 GGTACTAATTGGTGGCTGCTCA 60.356 50.000 4.47 0.00 0.00 4.26
2122 5089 2.289565 GGTACTAATTGGTGGCTGCTC 58.710 52.381 4.47 0.00 0.00 4.26
2128 5095 2.017049 GCTGCTGGTACTAATTGGTGG 58.983 52.381 4.47 0.00 0.00 4.61
2129 5096 2.017049 GGCTGCTGGTACTAATTGGTG 58.983 52.381 4.47 0.00 0.00 4.17
2130 5097 1.633432 TGGCTGCTGGTACTAATTGGT 59.367 47.619 0.00 0.00 0.00 3.67
2131 5098 2.292267 CTGGCTGCTGGTACTAATTGG 58.708 52.381 0.00 0.00 0.00 3.16
2132 5099 1.672881 GCTGGCTGCTGGTACTAATTG 59.327 52.381 9.31 0.00 38.95 2.32
2133 5100 2.044123 GCTGGCTGCTGGTACTAATT 57.956 50.000 9.31 0.00 38.95 1.40
2152 5119 7.438160 TGTCTCATGATTGGCGTAACTAAATAG 59.562 37.037 0.00 0.00 0.00 1.73
2155 5122 5.483811 TGTCTCATGATTGGCGTAACTAAA 58.516 37.500 0.00 0.00 0.00 1.85
2156 5123 5.079689 TGTCTCATGATTGGCGTAACTAA 57.920 39.130 0.00 0.00 0.00 2.24
2164 5131 3.755378 ACTCACTTTGTCTCATGATTGGC 59.245 43.478 0.00 0.00 0.00 4.52
2171 5138 7.716799 AATCTCTCTACTCACTTTGTCTCAT 57.283 36.000 0.00 0.00 0.00 2.90
2173 5140 7.064847 TCGTAATCTCTCTACTCACTTTGTCTC 59.935 40.741 0.00 0.00 0.00 3.36
2174 5141 6.879993 TCGTAATCTCTCTACTCACTTTGTCT 59.120 38.462 0.00 0.00 0.00 3.41
2175 5142 7.074507 TCGTAATCTCTCTACTCACTTTGTC 57.925 40.000 0.00 0.00 0.00 3.18
2215 5182 9.790344 AGTTCCAGTAATGTACGTATCTAGTAT 57.210 33.333 0.00 0.00 0.00 2.12
2216 5183 9.618890 AAGTTCCAGTAATGTACGTATCTAGTA 57.381 33.333 0.00 0.00 0.00 1.82
2217 5184 8.404000 CAAGTTCCAGTAATGTACGTATCTAGT 58.596 37.037 0.00 0.00 0.00 2.57
2218 5185 7.861372 CCAAGTTCCAGTAATGTACGTATCTAG 59.139 40.741 0.00 0.00 0.00 2.43
2220 5187 6.406624 CCCAAGTTCCAGTAATGTACGTATCT 60.407 42.308 0.00 0.00 0.00 1.98
2221 5188 5.751990 CCCAAGTTCCAGTAATGTACGTATC 59.248 44.000 0.00 0.00 0.00 2.24
2222 5189 5.422970 TCCCAAGTTCCAGTAATGTACGTAT 59.577 40.000 0.00 0.00 0.00 3.06
2223 5190 4.771577 TCCCAAGTTCCAGTAATGTACGTA 59.228 41.667 0.00 0.00 0.00 3.57
2225 5192 4.181578 CTCCCAAGTTCCAGTAATGTACG 58.818 47.826 0.00 0.00 0.00 3.67
2227 5194 4.431378 TCCTCCCAAGTTCCAGTAATGTA 58.569 43.478 0.00 0.00 0.00 2.29
2230 5197 3.916989 ACTTCCTCCCAAGTTCCAGTAAT 59.083 43.478 0.00 0.00 32.34 1.89
2231 5198 3.072476 CACTTCCTCCCAAGTTCCAGTAA 59.928 47.826 0.00 0.00 34.17 2.24
2232 5199 2.637872 CACTTCCTCCCAAGTTCCAGTA 59.362 50.000 0.00 0.00 34.17 2.74
2233 5200 1.421646 CACTTCCTCCCAAGTTCCAGT 59.578 52.381 0.00 0.00 34.17 4.00
2234 5201 1.699634 TCACTTCCTCCCAAGTTCCAG 59.300 52.381 0.00 0.00 34.17 3.86
2236 5203 2.305927 TGATCACTTCCTCCCAAGTTCC 59.694 50.000 0.00 0.00 34.17 3.62
2238 5205 2.982488 ACTGATCACTTCCTCCCAAGTT 59.018 45.455 0.00 0.00 34.17 2.66
2240 5207 2.568956 TGACTGATCACTTCCTCCCAAG 59.431 50.000 0.00 0.00 0.00 3.61
2243 5210 2.834549 TCTTGACTGATCACTTCCTCCC 59.165 50.000 0.00 0.00 33.38 4.30
2244 5211 3.766591 TCTCTTGACTGATCACTTCCTCC 59.233 47.826 0.00 0.00 33.38 4.30
2245 5212 5.596836 ATCTCTTGACTGATCACTTCCTC 57.403 43.478 0.00 0.00 33.38 3.71
2247 5214 7.327214 ACTAAATCTCTTGACTGATCACTTCC 58.673 38.462 0.00 0.00 33.38 3.46
2248 5215 8.250332 AGACTAAATCTCTTGACTGATCACTTC 58.750 37.037 0.00 0.00 29.14 3.01
2250 5217 7.716799 AGACTAAATCTCTTGACTGATCACT 57.283 36.000 0.00 0.00 29.14 3.41
2279 5268 9.692325 AAAACAAAAGCTCTATTATCTCCTCAT 57.308 29.630 0.00 0.00 0.00 2.90
2287 5276 9.289303 CGCACATTAAAACAAAAGCTCTATTAT 57.711 29.630 0.00 0.00 0.00 1.28
2288 5277 8.293867 ACGCACATTAAAACAAAAGCTCTATTA 58.706 29.630 0.00 0.00 0.00 0.98
2290 5279 6.582295 CACGCACATTAAAACAAAAGCTCTAT 59.418 34.615 0.00 0.00 0.00 1.98
2291 5280 5.912396 CACGCACATTAAAACAAAAGCTCTA 59.088 36.000 0.00 0.00 0.00 2.43
2292 5281 4.739716 CACGCACATTAAAACAAAAGCTCT 59.260 37.500 0.00 0.00 0.00 4.09
2293 5282 4.502645 ACACGCACATTAAAACAAAAGCTC 59.497 37.500 0.00 0.00 0.00 4.09
2294 5283 4.267452 CACACGCACATTAAAACAAAAGCT 59.733 37.500 0.00 0.00 0.00 3.74
2295 5284 4.032331 ACACACGCACATTAAAACAAAAGC 59.968 37.500 0.00 0.00 0.00 3.51
2296 5285 5.061560 ACACACACGCACATTAAAACAAAAG 59.938 36.000 0.00 0.00 0.00 2.27
2298 5287 4.486090 ACACACACGCACATTAAAACAAA 58.514 34.783 0.00 0.00 0.00 2.83
2301 5290 3.947626 AGACACACACGCACATTAAAAC 58.052 40.909 0.00 0.00 0.00 2.43
2303 5292 5.736486 TTAAGACACACACGCACATTAAA 57.264 34.783 0.00 0.00 0.00 1.52
2304 5293 4.319190 GCTTAAGACACACACGCACATTAA 60.319 41.667 6.67 0.00 0.00 1.40
2305 5294 3.185594 GCTTAAGACACACACGCACATTA 59.814 43.478 6.67 0.00 0.00 1.90
2307 5296 1.531149 GCTTAAGACACACACGCACAT 59.469 47.619 6.67 0.00 0.00 3.21
2308 5297 0.934496 GCTTAAGACACACACGCACA 59.066 50.000 6.67 0.00 0.00 4.57
2309 5298 1.217882 AGCTTAAGACACACACGCAC 58.782 50.000 6.67 0.00 0.00 5.34
2311 5300 1.660333 GCAAGCTTAAGACACACACGC 60.660 52.381 6.67 0.00 0.00 5.34
2312 5301 1.397190 CGCAAGCTTAAGACACACACG 60.397 52.381 6.67 0.00 0.00 4.49
2313 5302 1.864711 TCGCAAGCTTAAGACACACAC 59.135 47.619 6.67 0.00 37.18 3.82
2315 5304 1.136224 GCTCGCAAGCTTAAGACACAC 60.136 52.381 6.67 0.00 45.55 3.82
2316 5305 1.148310 GCTCGCAAGCTTAAGACACA 58.852 50.000 6.67 0.00 45.55 3.72
2327 5316 0.947244 AGGTTCAACAAGCTCGCAAG 59.053 50.000 0.00 0.00 35.29 4.01
2328 5317 1.388547 AAGGTTCAACAAGCTCGCAA 58.611 45.000 0.00 0.00 39.53 4.85
2329 5318 1.388547 AAAGGTTCAACAAGCTCGCA 58.611 45.000 0.00 0.00 39.53 5.10
2330 5319 3.297472 GTTAAAGGTTCAACAAGCTCGC 58.703 45.455 0.00 0.00 39.53 5.03
2331 5320 3.314080 TGGTTAAAGGTTCAACAAGCTCG 59.686 43.478 0.00 0.00 39.53 5.03
2332 5321 4.911514 TGGTTAAAGGTTCAACAAGCTC 57.088 40.909 0.00 0.00 39.53 4.09
2333 5322 4.039124 CCATGGTTAAAGGTTCAACAAGCT 59.961 41.667 2.57 0.00 42.37 3.74
2334 5323 4.306600 CCATGGTTAAAGGTTCAACAAGC 58.693 43.478 2.57 0.00 0.00 4.01
2335 5324 4.799255 GCCCATGGTTAAAGGTTCAACAAG 60.799 45.833 11.73 0.00 0.00 3.16
2336 5325 3.070302 GCCCATGGTTAAAGGTTCAACAA 59.930 43.478 11.73 0.00 0.00 2.83
2337 5326 2.630580 GCCCATGGTTAAAGGTTCAACA 59.369 45.455 11.73 0.00 0.00 3.33
2338 5327 2.630580 TGCCCATGGTTAAAGGTTCAAC 59.369 45.455 11.73 0.00 0.00 3.18
2339 5328 2.964209 TGCCCATGGTTAAAGGTTCAA 58.036 42.857 11.73 0.00 0.00 2.69
2340 5329 2.685106 TGCCCATGGTTAAAGGTTCA 57.315 45.000 11.73 0.00 0.00 3.18
2341 5330 4.551702 ATTTGCCCATGGTTAAAGGTTC 57.448 40.909 11.73 0.00 0.00 3.62
2342 5331 4.991789 AATTTGCCCATGGTTAAAGGTT 57.008 36.364 11.73 1.60 0.00 3.50
2343 5332 4.991789 AAATTTGCCCATGGTTAAAGGT 57.008 36.364 11.73 1.72 0.00 3.50
2344 5333 8.043710 TGTAATAAATTTGCCCATGGTTAAAGG 58.956 33.333 11.73 0.00 0.00 3.11
2345 5334 9.612066 ATGTAATAAATTTGCCCATGGTTAAAG 57.388 29.630 11.73 0.00 0.00 1.85
2346 5335 9.965902 AATGTAATAAATTTGCCCATGGTTAAA 57.034 25.926 11.73 11.68 0.00 1.52
2349 5338 9.389755 GTTAATGTAATAAATTTGCCCATGGTT 57.610 29.630 11.73 0.00 0.00 3.67
2350 5339 7.990314 GGTTAATGTAATAAATTTGCCCATGGT 59.010 33.333 11.73 0.00 0.00 3.55
2351 5340 7.989741 TGGTTAATGTAATAAATTTGCCCATGG 59.010 33.333 4.14 4.14 0.00 3.66
2352 5341 8.954950 TGGTTAATGTAATAAATTTGCCCATG 57.045 30.769 0.00 0.00 0.00 3.66
2353 5342 9.558396 CATGGTTAATGTAATAAATTTGCCCAT 57.442 29.630 0.00 0.00 0.00 4.00
2354 5343 7.497249 GCATGGTTAATGTAATAAATTTGCCCA 59.503 33.333 0.00 0.00 38.65 5.36
2355 5344 7.497249 TGCATGGTTAATGTAATAAATTTGCCC 59.503 33.333 0.00 0.00 38.65 5.36
2356 5345 8.430801 TGCATGGTTAATGTAATAAATTTGCC 57.569 30.769 0.00 0.00 38.65 4.52
2362 5351 9.988815 ACAAGTTTGCATGGTTAATGTAATAAA 57.011 25.926 0.00 0.00 40.11 1.40
2363 5352 9.988815 AACAAGTTTGCATGGTTAATGTAATAA 57.011 25.926 0.00 0.00 40.11 1.40
2364 5353 9.416794 CAACAAGTTTGCATGGTTAATGTAATA 57.583 29.630 0.00 0.00 40.11 0.98
2365 5354 7.930865 ACAACAAGTTTGCATGGTTAATGTAAT 59.069 29.630 0.00 0.00 40.11 1.89
2366 5355 7.268586 ACAACAAGTTTGCATGGTTAATGTAA 58.731 30.769 0.00 0.00 38.88 2.41
2367 5356 6.810911 ACAACAAGTTTGCATGGTTAATGTA 58.189 32.000 0.00 0.00 38.65 2.29
2368 5357 5.669477 ACAACAAGTTTGCATGGTTAATGT 58.331 33.333 0.00 0.00 38.65 2.71
2369 5358 6.601741 AACAACAAGTTTGCATGGTTAATG 57.398 33.333 0.00 0.00 37.03 1.90
2382 5371 7.836842 AGACATGAAGGTTAAAACAACAAGTT 58.163 30.769 0.00 0.00 43.89 2.66
2383 5372 7.404671 AGACATGAAGGTTAAAACAACAAGT 57.595 32.000 0.00 0.00 0.00 3.16
2384 5373 8.402472 TGTAGACATGAAGGTTAAAACAACAAG 58.598 33.333 0.00 0.00 0.00 3.16
2385 5374 8.185505 GTGTAGACATGAAGGTTAAAACAACAA 58.814 33.333 0.00 0.00 0.00 2.83
2386 5375 7.201750 GGTGTAGACATGAAGGTTAAAACAACA 60.202 37.037 0.00 0.00 0.00 3.33
2387 5376 7.136772 GGTGTAGACATGAAGGTTAAAACAAC 58.863 38.462 0.00 0.00 0.00 3.32
2388 5377 6.829298 TGGTGTAGACATGAAGGTTAAAACAA 59.171 34.615 0.00 0.00 0.00 2.83
2389 5378 6.261381 GTGGTGTAGACATGAAGGTTAAAACA 59.739 38.462 0.00 0.00 0.00 2.83
2390 5379 6.293790 GGTGGTGTAGACATGAAGGTTAAAAC 60.294 42.308 0.00 0.00 0.00 2.43
2391 5380 5.766174 GGTGGTGTAGACATGAAGGTTAAAA 59.234 40.000 0.00 0.00 0.00 1.52
2392 5381 5.163184 TGGTGGTGTAGACATGAAGGTTAAA 60.163 40.000 0.00 0.00 0.00 1.52
2393 5382 4.348461 TGGTGGTGTAGACATGAAGGTTAA 59.652 41.667 0.00 0.00 0.00 2.01
2394 5383 3.904965 TGGTGGTGTAGACATGAAGGTTA 59.095 43.478 0.00 0.00 0.00 2.85
2395 5384 2.708861 TGGTGGTGTAGACATGAAGGTT 59.291 45.455 0.00 0.00 0.00 3.50
2396 5385 2.334977 TGGTGGTGTAGACATGAAGGT 58.665 47.619 0.00 0.00 0.00 3.50
2397 5386 3.535561 GATGGTGGTGTAGACATGAAGG 58.464 50.000 0.00 0.00 0.00 3.46
2398 5387 3.119137 TCGATGGTGGTGTAGACATGAAG 60.119 47.826 0.00 0.00 0.00 3.02
2399 5388 2.829120 TCGATGGTGGTGTAGACATGAA 59.171 45.455 0.00 0.00 0.00 2.57
2400 5389 2.452505 TCGATGGTGGTGTAGACATGA 58.547 47.619 0.00 0.00 0.00 3.07
2401 5390 2.959507 TCGATGGTGGTGTAGACATG 57.040 50.000 0.00 0.00 0.00 3.21
2402 5391 3.007506 TGTTTCGATGGTGGTGTAGACAT 59.992 43.478 0.00 0.00 0.00 3.06
2403 5392 2.365941 TGTTTCGATGGTGGTGTAGACA 59.634 45.455 0.00 0.00 0.00 3.41
2404 5393 3.034721 TGTTTCGATGGTGGTGTAGAC 57.965 47.619 0.00 0.00 0.00 2.59
2405 5394 3.007506 ACATGTTTCGATGGTGGTGTAGA 59.992 43.478 0.00 0.00 0.00 2.59
2406 5395 3.334691 ACATGTTTCGATGGTGGTGTAG 58.665 45.455 0.00 0.00 0.00 2.74
2407 5396 3.410631 ACATGTTTCGATGGTGGTGTA 57.589 42.857 0.00 0.00 0.00 2.90
2408 5397 2.270352 ACATGTTTCGATGGTGGTGT 57.730 45.000 0.00 0.00 0.00 4.16
2409 5398 3.001228 CGATACATGTTTCGATGGTGGTG 59.999 47.826 27.90 1.11 36.40 4.17
2410 5399 3.194861 CGATACATGTTTCGATGGTGGT 58.805 45.455 27.90 0.00 36.40 4.16
2411 5400 2.032894 GCGATACATGTTTCGATGGTGG 60.033 50.000 33.45 10.70 36.40 4.61
2412 5401 2.607180 TGCGATACATGTTTCGATGGTG 59.393 45.455 33.45 11.31 36.40 4.17
2413 5402 2.607635 GTGCGATACATGTTTCGATGGT 59.392 45.455 33.45 0.00 36.40 3.55
2414 5403 2.607180 TGTGCGATACATGTTTCGATGG 59.393 45.455 33.45 12.32 36.40 3.51
2415 5404 3.544048 GGTGTGCGATACATGTTTCGATG 60.544 47.826 33.45 12.54 42.24 3.84
2416 5405 2.607635 GGTGTGCGATACATGTTTCGAT 59.392 45.455 33.45 10.48 42.24 3.59
2417 5406 1.996898 GGTGTGCGATACATGTTTCGA 59.003 47.619 33.45 19.63 42.24 3.71
2418 5407 1.729517 TGGTGTGCGATACATGTTTCG 59.270 47.619 27.64 27.64 42.24 3.46
2419 5408 2.476185 GCTGGTGTGCGATACATGTTTC 60.476 50.000 2.30 4.71 42.24 2.78
2420 5409 1.468520 GCTGGTGTGCGATACATGTTT 59.531 47.619 2.30 0.00 42.24 2.83
2421 5410 1.086696 GCTGGTGTGCGATACATGTT 58.913 50.000 2.30 0.00 42.24 2.71
2422 5411 0.036483 TGCTGGTGTGCGATACATGT 60.036 50.000 2.69 2.69 42.24 3.21
2423 5412 1.302366 ATGCTGGTGTGCGATACATG 58.698 50.000 0.00 0.00 42.24 3.21
2424 5413 2.908688 TATGCTGGTGTGCGATACAT 57.091 45.000 0.00 0.00 42.24 2.29
2425 5414 2.682155 TTATGCTGGTGTGCGATACA 57.318 45.000 0.00 0.00 36.82 2.29
2426 5415 4.273480 AGAATTTATGCTGGTGTGCGATAC 59.727 41.667 0.00 0.00 35.36 2.24
2427 5416 4.450976 AGAATTTATGCTGGTGTGCGATA 58.549 39.130 0.00 0.00 35.36 2.92
2428 5417 3.282021 AGAATTTATGCTGGTGTGCGAT 58.718 40.909 0.00 0.00 35.36 4.58
2429 5418 2.710377 AGAATTTATGCTGGTGTGCGA 58.290 42.857 0.00 0.00 35.36 5.10
2430 5419 3.492421 AAGAATTTATGCTGGTGTGCG 57.508 42.857 0.00 0.00 35.36 5.34
2431 5420 5.473039 AGAAAAGAATTTATGCTGGTGTGC 58.527 37.500 0.00 0.00 37.28 4.57
2432 5421 7.951530 AAAGAAAAGAATTTATGCTGGTGTG 57.048 32.000 0.00 0.00 37.28 3.82
2433 5422 8.962884 AAAAAGAAAAGAATTTATGCTGGTGT 57.037 26.923 0.00 0.00 37.28 4.16
2464 5453 9.971922 AACAAAATTTCCATGTTTCAAAAACAA 57.028 22.222 9.10 0.00 33.73 2.83
2465 5454 9.403110 CAACAAAATTTCCATGTTTCAAAAACA 57.597 25.926 7.63 7.63 35.22 2.83
2466 5455 9.617975 TCAACAAAATTTCCATGTTTCAAAAAC 57.382 25.926 4.37 0.00 35.22 2.43
2552 5541 7.771927 AAAAATGTGAAAGACTCTGATGGAT 57.228 32.000 0.00 0.00 0.00 3.41
2595 5584 7.111247 TGTTTCATATAAAAGAAGCATGGGG 57.889 36.000 0.00 0.00 31.44 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.