Multiple sequence alignment - TraesCS7A01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G057900 chr7A 100.000 5797 0 0 1 5797 28037908 28043704 0.000000e+00 10706.0
1 TraesCS7A01G057900 chr7A 90.377 530 47 2 4819 5348 28120174 28120699 0.000000e+00 693.0
2 TraesCS7A01G057900 chr7A 89.642 531 49 4 4819 5348 28106295 28106820 0.000000e+00 671.0
3 TraesCS7A01G057900 chr7A 94.355 372 20 1 1987 2358 28186301 28186671 2.340000e-158 569.0
4 TraesCS7A01G057900 chr7A 88.889 234 21 4 5565 5797 28207437 28207666 3.420000e-72 283.0
5 TraesCS7A01G057900 chr7A 90.291 206 16 3 5565 5769 28123799 28124001 3.440000e-67 267.0
6 TraesCS7A01G057900 chr7A 91.096 146 13 0 2351 2496 28040111 28040256 1.270000e-46 198.0
7 TraesCS7A01G057900 chr7A 91.096 146 13 0 2204 2349 28040258 28040403 1.270000e-46 198.0
8 TraesCS7A01G057900 chr7D 90.502 3264 221 32 147 3359 27837160 27840385 0.000000e+00 4228.0
9 TraesCS7A01G057900 chr7D 88.500 2426 179 44 3432 5797 27840410 27842795 0.000000e+00 2843.0
10 TraesCS7A01G057900 chr7D 90.112 981 77 13 4819 5797 27847656 27848618 0.000000e+00 1256.0
11 TraesCS7A01G057900 chr7D 89.206 982 74 17 4819 5797 27853485 27854437 0.000000e+00 1197.0
12 TraesCS7A01G057900 chr7D 88.685 981 81 15 4819 5797 27859307 27860259 0.000000e+00 1170.0
13 TraesCS7A01G057900 chr7D 86.607 224 27 3 1195 1417 27958988 27959209 1.610000e-60 244.0
14 TraesCS7A01G057900 chr7D 95.238 147 7 0 2204 2350 27839376 27839522 3.490000e-57 233.0
15 TraesCS7A01G057900 chr7D 90.411 146 14 0 2351 2496 27839229 27839374 5.930000e-45 193.0
16 TraesCS7A01G057900 chr7D 86.986 146 17 2 1 145 27819876 27820020 4.650000e-36 163.0
17 TraesCS7A01G057900 chr4A 92.355 2132 110 26 1848 3953 703337616 703339720 0.000000e+00 2985.0
18 TraesCS7A01G057900 chr4A 88.726 1091 66 22 3937 4978 703340125 703341207 0.000000e+00 1280.0
19 TraesCS7A01G057900 chr4A 86.976 1098 97 16 4404 5489 703359534 703360597 0.000000e+00 1194.0
20 TraesCS7A01G057900 chr4A 86.271 1027 64 40 859 1844 703336577 703337567 0.000000e+00 1044.0
21 TraesCS7A01G057900 chr4A 91.413 559 44 3 221 775 703333270 703333828 0.000000e+00 763.0
22 TraesCS7A01G057900 chr4A 85.765 281 29 9 5169 5444 703341302 703341576 2.640000e-73 287.0
23 TraesCS7A01G057900 chr4A 90.865 208 16 3 5591 5797 703403686 703403891 5.720000e-70 276.0
24 TraesCS7A01G057900 chr4A 88.034 234 23 4 5565 5797 703360637 703360866 7.400000e-69 272.0
25 TraesCS7A01G057900 chr4A 92.517 147 11 0 2204 2350 703338109 703338255 1.640000e-50 211.0
26 TraesCS7A01G057900 chr4A 87.432 183 17 2 4233 4409 703342375 703342557 7.610000e-49 206.0
27 TraesCS7A01G057900 chr4A 90.411 146 14 0 2351 2496 703337962 703338107 5.930000e-45 193.0
28 TraesCS7A01G057900 chr4A 97.917 96 2 0 141 236 703333159 703333254 3.590000e-37 167.0
29 TraesCS7A01G057900 chr4A 84.615 104 12 4 5017 5118 703341203 703341304 3.700000e-17 100.0
30 TraesCS7A01G057900 chrUn 91.636 538 37 6 5261 5797 442720989 442721519 0.000000e+00 737.0
31 TraesCS7A01G057900 chr5A 78.723 376 49 16 1866 2237 667096221 667095873 7.560000e-54 222.0
32 TraesCS7A01G057900 chr5B 77.679 112 23 2 2125 2235 415765961 415765851 3.750000e-07 67.6
33 TraesCS7A01G057900 chr1B 75.163 153 32 4 2088 2237 61955849 61955700 3.750000e-07 67.6
34 TraesCS7A01G057900 chr1B 96.970 33 1 0 2352 2384 61955732 61955700 8.110000e-04 56.5
35 TraesCS7A01G057900 chr6D 88.636 44 5 0 2124 2167 391682462 391682505 3.000000e-03 54.7
36 TraesCS7A01G057900 chr7B 100.000 28 0 0 2140 2167 153593923 153593896 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G057900 chr7A 28037908 28043704 5796 False 3700.666667 10706 94.06400 1 5797 3 chr7A.!!$F4 5796
1 TraesCS7A01G057900 chr7A 28106295 28106820 525 False 671.000000 671 89.64200 4819 5348 1 chr7A.!!$F1 529
2 TraesCS7A01G057900 chr7A 28120174 28124001 3827 False 480.000000 693 90.33400 4819 5769 2 chr7A.!!$F5 950
3 TraesCS7A01G057900 chr7D 27837160 27842795 5635 False 1874.250000 4228 91.16275 147 5797 4 chr7D.!!$F6 5650
4 TraesCS7A01G057900 chr7D 27847656 27848618 962 False 1256.000000 1256 90.11200 4819 5797 1 chr7D.!!$F2 978
5 TraesCS7A01G057900 chr7D 27853485 27854437 952 False 1197.000000 1197 89.20600 4819 5797 1 chr7D.!!$F3 978
6 TraesCS7A01G057900 chr7D 27859307 27860259 952 False 1170.000000 1170 88.68500 4819 5797 1 chr7D.!!$F4 978
7 TraesCS7A01G057900 chr4A 703359534 703360866 1332 False 733.000000 1194 87.50500 4404 5797 2 chr4A.!!$F3 1393
8 TraesCS7A01G057900 chr4A 703333159 703342557 9398 False 723.600000 2985 89.74220 141 5444 10 chr4A.!!$F2 5303
9 TraesCS7A01G057900 chrUn 442720989 442721519 530 False 737.000000 737 91.63600 5261 5797 1 chrUn.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.476771 TGTTGTCTTTCCCTCCACCC 59.523 55.0 0.00 0.0 0.00 4.61 F
578 613 0.676782 GGGAACGCCATTAGTGCAGT 60.677 55.0 0.00 0.0 35.15 4.40 F
2043 4862 0.031994 GAAACGCCATTGCTTGTGGT 59.968 50.0 4.86 0.0 39.01 4.16 F
2447 5266 0.178921 TGGGAGAGGCAGAGAACACT 60.179 55.0 0.00 0.0 0.00 3.55 F
3883 6746 0.311790 ATTGTGTTGTGCCTTGCTCG 59.688 50.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 4230 0.243636 CGCTTTTTCAAGGGCCGAAT 59.756 50.0 0.0 0.0 36.27 3.34 R
2414 5233 0.107848 CTCCCAAGCCGTCCGTTTAT 60.108 55.0 0.0 0.0 0.00 1.40 R
3873 6736 0.037326 CCAAGAGTACGAGCAAGGCA 60.037 55.0 0.0 0.0 0.00 4.75 R
3993 7279 0.178958 ACCGTCTCTCTGGGACAAGT 60.179 55.0 0.0 0.0 38.70 3.16 R
5197 8542 0.111253 CTGGAACAAAGGAGGGCAGT 59.889 55.0 0.0 0.0 38.70 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.804770 TTTTGATTTTCATTGCATTGGAGG 57.195 33.333 8.64 0.00 0.00 4.30
32 33 5.486735 TTGATTTTCATTGCATTGGAGGT 57.513 34.783 8.64 0.00 0.00 3.85
33 34 5.075858 TGATTTTCATTGCATTGGAGGTC 57.924 39.130 8.64 3.42 0.00 3.85
34 35 4.773674 TGATTTTCATTGCATTGGAGGTCT 59.226 37.500 8.64 0.00 0.00 3.85
35 36 5.246656 TGATTTTCATTGCATTGGAGGTCTT 59.753 36.000 8.64 0.00 0.00 3.01
36 37 5.549742 TTTTCATTGCATTGGAGGTCTTT 57.450 34.783 8.64 0.00 0.00 2.52
37 38 4.789012 TTCATTGCATTGGAGGTCTTTC 57.211 40.909 8.64 0.00 0.00 2.62
38 39 3.091545 TCATTGCATTGGAGGTCTTTCC 58.908 45.455 8.64 0.00 37.77 3.13
39 40 2.673775 TTGCATTGGAGGTCTTTCCA 57.326 45.000 0.00 0.00 45.34 3.53
40 41 1.909700 TGCATTGGAGGTCTTTCCAC 58.090 50.000 0.00 0.00 46.61 4.02
41 42 1.177401 GCATTGGAGGTCTTTCCACC 58.823 55.000 0.00 0.00 46.61 4.61
48 49 1.945580 AGGTCTTTCCACCTCTCCTC 58.054 55.000 0.00 0.00 44.08 3.71
49 50 1.150135 AGGTCTTTCCACCTCTCCTCA 59.850 52.381 0.00 0.00 44.08 3.86
50 51 2.192263 GGTCTTTCCACCTCTCCTCAT 58.808 52.381 0.00 0.00 35.97 2.90
51 52 2.573915 GGTCTTTCCACCTCTCCTCATT 59.426 50.000 0.00 0.00 35.97 2.57
52 53 3.604582 GTCTTTCCACCTCTCCTCATTG 58.395 50.000 0.00 0.00 0.00 2.82
53 54 2.026822 TCTTTCCACCTCTCCTCATTGC 60.027 50.000 0.00 0.00 0.00 3.56
54 55 1.361204 TTCCACCTCTCCTCATTGCA 58.639 50.000 0.00 0.00 0.00 4.08
55 56 1.361204 TCCACCTCTCCTCATTGCAA 58.639 50.000 0.00 0.00 0.00 4.08
56 57 1.704628 TCCACCTCTCCTCATTGCAAA 59.295 47.619 1.71 0.00 0.00 3.68
57 58 2.309755 TCCACCTCTCCTCATTGCAAAT 59.690 45.455 1.71 0.00 0.00 2.32
58 59 2.686915 CCACCTCTCCTCATTGCAAATC 59.313 50.000 1.71 0.00 0.00 2.17
59 60 3.618351 CACCTCTCCTCATTGCAAATCT 58.382 45.455 1.71 0.00 0.00 2.40
60 61 3.626670 CACCTCTCCTCATTGCAAATCTC 59.373 47.826 1.71 0.00 0.00 2.75
61 62 3.212685 CCTCTCCTCATTGCAAATCTCC 58.787 50.000 1.71 0.00 0.00 3.71
62 63 3.371273 CCTCTCCTCATTGCAAATCTCCA 60.371 47.826 1.71 0.00 0.00 3.86
63 64 4.462133 CTCTCCTCATTGCAAATCTCCAT 58.538 43.478 1.71 0.00 0.00 3.41
64 65 4.458397 TCTCCTCATTGCAAATCTCCATC 58.542 43.478 1.71 0.00 0.00 3.51
65 66 3.559069 TCCTCATTGCAAATCTCCATCC 58.441 45.455 1.71 0.00 0.00 3.51
66 67 3.053470 TCCTCATTGCAAATCTCCATCCA 60.053 43.478 1.71 0.00 0.00 3.41
67 68 3.702548 CCTCATTGCAAATCTCCATCCAA 59.297 43.478 1.71 0.00 0.00 3.53
68 69 4.441079 CCTCATTGCAAATCTCCATCCAAC 60.441 45.833 1.71 0.00 0.00 3.77
69 70 4.087907 TCATTGCAAATCTCCATCCAACA 58.912 39.130 1.71 0.00 0.00 3.33
70 71 4.527427 TCATTGCAAATCTCCATCCAACAA 59.473 37.500 1.71 0.00 0.00 2.83
71 72 5.188163 TCATTGCAAATCTCCATCCAACAAT 59.812 36.000 1.71 0.00 0.00 2.71
72 73 4.459390 TGCAAATCTCCATCCAACAATG 57.541 40.909 0.00 0.00 0.00 2.82
83 84 2.322355 CCAACAATGGTGCAAACCAA 57.678 45.000 0.99 0.00 43.83 3.67
84 85 2.636830 CCAACAATGGTGCAAACCAAA 58.363 42.857 0.99 0.00 43.83 3.28
85 86 3.212685 CCAACAATGGTGCAAACCAAAT 58.787 40.909 0.99 0.00 43.83 2.32
86 87 3.003482 CCAACAATGGTGCAAACCAAATG 59.997 43.478 0.99 7.03 43.83 2.32
87 88 3.557228 ACAATGGTGCAAACCAAATGT 57.443 38.095 11.68 11.68 43.83 2.71
88 89 3.204526 ACAATGGTGCAAACCAAATGTG 58.795 40.909 15.02 8.45 43.83 3.21
89 90 3.204526 CAATGGTGCAAACCAAATGTGT 58.795 40.909 0.99 0.00 43.83 3.72
90 91 3.557228 ATGGTGCAAACCAAATGTGTT 57.443 38.095 0.99 0.00 43.83 3.32
91 92 2.625737 TGGTGCAAACCAAATGTGTTG 58.374 42.857 0.00 0.00 36.74 3.33
92 93 2.027745 TGGTGCAAACCAAATGTGTTGT 60.028 40.909 0.00 0.00 36.74 3.32
93 94 2.607180 GGTGCAAACCAAATGTGTTGTC 59.393 45.455 0.00 0.00 0.00 3.18
94 95 3.520569 GTGCAAACCAAATGTGTTGTCT 58.479 40.909 0.00 0.00 0.00 3.41
95 96 3.932089 GTGCAAACCAAATGTGTTGTCTT 59.068 39.130 0.00 0.00 0.00 3.01
96 97 4.391523 GTGCAAACCAAATGTGTTGTCTTT 59.608 37.500 0.00 0.00 0.00 2.52
97 98 4.629200 TGCAAACCAAATGTGTTGTCTTTC 59.371 37.500 0.00 0.00 0.00 2.62
98 99 4.033932 GCAAACCAAATGTGTTGTCTTTCC 59.966 41.667 0.00 0.00 0.00 3.13
99 100 4.400529 AACCAAATGTGTTGTCTTTCCC 57.599 40.909 0.00 0.00 0.00 3.97
100 101 3.642141 ACCAAATGTGTTGTCTTTCCCT 58.358 40.909 0.00 0.00 0.00 4.20
101 102 3.636764 ACCAAATGTGTTGTCTTTCCCTC 59.363 43.478 0.00 0.00 0.00 4.30
102 103 3.005791 CCAAATGTGTTGTCTTTCCCTCC 59.994 47.826 0.00 0.00 0.00 4.30
103 104 3.593442 AATGTGTTGTCTTTCCCTCCA 57.407 42.857 0.00 0.00 0.00 3.86
104 105 2.341846 TGTGTTGTCTTTCCCTCCAC 57.658 50.000 0.00 0.00 0.00 4.02
105 106 1.133915 TGTGTTGTCTTTCCCTCCACC 60.134 52.381 0.00 0.00 0.00 4.61
106 107 0.476771 TGTTGTCTTTCCCTCCACCC 59.523 55.000 0.00 0.00 0.00 4.61
107 108 0.771755 GTTGTCTTTCCCTCCACCCT 59.228 55.000 0.00 0.00 0.00 4.34
108 109 1.145119 GTTGTCTTTCCCTCCACCCTT 59.855 52.381 0.00 0.00 0.00 3.95
109 110 1.064825 TGTCTTTCCCTCCACCCTTC 58.935 55.000 0.00 0.00 0.00 3.46
110 111 1.363246 GTCTTTCCCTCCACCCTTCT 58.637 55.000 0.00 0.00 0.00 2.85
111 112 1.705745 GTCTTTCCCTCCACCCTTCTT 59.294 52.381 0.00 0.00 0.00 2.52
112 113 1.985895 TCTTTCCCTCCACCCTTCTTC 59.014 52.381 0.00 0.00 0.00 2.87
113 114 1.988846 CTTTCCCTCCACCCTTCTTCT 59.011 52.381 0.00 0.00 0.00 2.85
114 115 2.133858 TTCCCTCCACCCTTCTTCTT 57.866 50.000 0.00 0.00 0.00 2.52
115 116 2.133858 TCCCTCCACCCTTCTTCTTT 57.866 50.000 0.00 0.00 0.00 2.52
116 117 1.985895 TCCCTCCACCCTTCTTCTTTC 59.014 52.381 0.00 0.00 0.00 2.62
117 118 1.004862 CCCTCCACCCTTCTTCTTTCC 59.995 57.143 0.00 0.00 0.00 3.13
118 119 1.988846 CCTCCACCCTTCTTCTTTCCT 59.011 52.381 0.00 0.00 0.00 3.36
119 120 2.376855 CCTCCACCCTTCTTCTTTCCTT 59.623 50.000 0.00 0.00 0.00 3.36
120 121 3.181428 CCTCCACCCTTCTTCTTTCCTTT 60.181 47.826 0.00 0.00 0.00 3.11
121 122 3.823304 CTCCACCCTTCTTCTTTCCTTTG 59.177 47.826 0.00 0.00 0.00 2.77
122 123 2.297315 CCACCCTTCTTCTTTCCTTTGC 59.703 50.000 0.00 0.00 0.00 3.68
123 124 2.297315 CACCCTTCTTCTTTCCTTTGCC 59.703 50.000 0.00 0.00 0.00 4.52
124 125 1.895798 CCCTTCTTCTTTCCTTTGCCC 59.104 52.381 0.00 0.00 0.00 5.36
125 126 2.491640 CCCTTCTTCTTTCCTTTGCCCT 60.492 50.000 0.00 0.00 0.00 5.19
126 127 3.234353 CCTTCTTCTTTCCTTTGCCCTT 58.766 45.455 0.00 0.00 0.00 3.95
127 128 4.407365 CCTTCTTCTTTCCTTTGCCCTTA 58.593 43.478 0.00 0.00 0.00 2.69
128 129 4.832823 CCTTCTTCTTTCCTTTGCCCTTAA 59.167 41.667 0.00 0.00 0.00 1.85
129 130 5.304357 CCTTCTTCTTTCCTTTGCCCTTAAA 59.696 40.000 0.00 0.00 0.00 1.52
130 131 6.183360 CCTTCTTCTTTCCTTTGCCCTTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
131 132 6.800072 TCTTCTTTCCTTTGCCCTTAAAAA 57.200 33.333 0.00 0.00 0.00 1.94
132 133 7.373617 TCTTCTTTCCTTTGCCCTTAAAAAT 57.626 32.000 0.00 0.00 0.00 1.82
133 134 7.801104 TCTTCTTTCCTTTGCCCTTAAAAATT 58.199 30.769 0.00 0.00 0.00 1.82
134 135 7.931407 TCTTCTTTCCTTTGCCCTTAAAAATTC 59.069 33.333 0.00 0.00 0.00 2.17
135 136 7.373617 TCTTTCCTTTGCCCTTAAAAATTCT 57.626 32.000 0.00 0.00 0.00 2.40
136 137 7.441836 TCTTTCCTTTGCCCTTAAAAATTCTC 58.558 34.615 0.00 0.00 0.00 2.87
137 138 5.385509 TCCTTTGCCCTTAAAAATTCTCG 57.614 39.130 0.00 0.00 0.00 4.04
138 139 5.074115 TCCTTTGCCCTTAAAAATTCTCGA 58.926 37.500 0.00 0.00 0.00 4.04
139 140 5.183140 TCCTTTGCCCTTAAAAATTCTCGAG 59.817 40.000 5.93 5.93 0.00 4.04
178 179 6.831976 ACATCTTGTCTTCTTTGGTACTCTT 58.168 36.000 0.00 0.00 0.00 2.85
225 257 4.789807 CCCTCATCTTCCATGTCAAGAAT 58.210 43.478 8.09 0.00 33.57 2.40
246 278 9.529325 AAGAATTTGATCTTATGATGCACATTG 57.471 29.630 7.02 2.81 37.88 2.82
308 340 6.672147 ACACAGATGTATTGCAAAAGAAGTC 58.328 36.000 1.71 0.00 37.26 3.01
447 481 3.994392 TCTAGTCATTTCACCGAACAAGC 59.006 43.478 0.00 0.00 0.00 4.01
488 522 1.393603 CGATGGGAGACACTAGCTCA 58.606 55.000 0.00 0.00 34.07 4.26
511 545 1.818959 TTGGACGACAACGGTAGGGG 61.819 60.000 0.00 0.00 44.46 4.79
578 613 0.676782 GGGAACGCCATTAGTGCAGT 60.677 55.000 0.00 0.00 35.15 4.40
595 630 0.959553 AGTCGACGCCTTCTTTCTCA 59.040 50.000 10.46 0.00 0.00 3.27
620 655 2.099062 CGCAGCAAAGACCGATGC 59.901 61.111 0.00 0.00 42.24 3.91
624 659 1.376543 CAGCAAAGACCGATGCATCT 58.623 50.000 23.73 6.64 44.95 2.90
625 660 1.741706 CAGCAAAGACCGATGCATCTT 59.258 47.619 23.73 9.72 44.95 2.40
639 674 1.238439 CATCTTGCGGTGACCACTTT 58.762 50.000 1.11 0.00 0.00 2.66
759 799 7.532682 TTTTTGAGGCAAAGTTTTGTGATAC 57.467 32.000 6.48 0.00 40.24 2.24
829 2719 3.356290 ACTGGGCTTATGTTTTAGGCTG 58.644 45.455 0.00 0.00 37.15 4.85
1000 3718 3.522731 CACTCTCTCCCTCCGGCG 61.523 72.222 0.00 0.00 0.00 6.46
1231 3977 3.468140 GCACCCTCCCGTCTACCC 61.468 72.222 0.00 0.00 0.00 3.69
1234 3980 2.043652 CCCTCCCGTCTACCCGAA 60.044 66.667 0.00 0.00 0.00 4.30
1247 3993 1.079336 CCCGAACCGTTCCTTCTCC 60.079 63.158 5.67 0.00 0.00 3.71
1254 4000 3.327404 GTTCCTTCTCCCGCCCCA 61.327 66.667 0.00 0.00 0.00 4.96
1314 4060 4.303853 CGAATCGATCCGCTTCGT 57.696 55.556 14.49 0.00 45.76 3.85
1384 4139 4.099170 CCTCCGTTCGAGTCGCGT 62.099 66.667 7.92 0.00 41.80 6.01
1385 4140 2.126965 CTCCGTTCGAGTCGCGTT 60.127 61.111 7.92 0.00 41.80 4.84
1386 4141 2.127118 TCCGTTCGAGTCGCGTTC 60.127 61.111 7.92 4.54 41.80 3.95
1387 4142 3.521220 CCGTTCGAGTCGCGTTCG 61.521 66.667 22.96 22.96 41.80 3.95
1388 4143 3.521220 CGTTCGAGTCGCGTTCGG 61.521 66.667 26.28 13.14 41.80 4.30
1389 4144 2.428071 GTTCGAGTCGCGTTCGGT 60.428 61.111 26.28 2.67 41.80 4.69
1390 4145 2.012948 GTTCGAGTCGCGTTCGGTT 61.013 57.895 26.28 2.09 41.80 4.44
1391 4146 2.012414 TTCGAGTCGCGTTCGGTTG 61.012 57.895 26.28 7.48 41.80 3.77
1392 4147 4.117372 CGAGTCGCGTTCGGTTGC 62.117 66.667 21.82 0.00 34.56 4.17
1440 4195 3.536994 GCGAAATCAAGCGTATTTTGC 57.463 42.857 14.05 14.05 43.08 3.68
1444 4199 1.745232 ATCAAGCGTATTTTGCGGGA 58.255 45.000 0.00 0.00 37.44 5.14
1446 4201 2.088423 TCAAGCGTATTTTGCGGGAAT 58.912 42.857 0.00 0.00 37.44 3.01
1475 4230 1.223487 GGGGCGTAGATTTCAGGCA 59.777 57.895 0.00 0.00 0.00 4.75
1491 4246 3.904586 GCATTCGGCCCTTGAAAAA 57.095 47.368 0.00 0.00 36.11 1.94
1493 4248 1.713597 CATTCGGCCCTTGAAAAAGC 58.286 50.000 0.00 0.00 0.00 3.51
1494 4249 0.243636 ATTCGGCCCTTGAAAAAGCG 59.756 50.000 0.00 0.00 0.00 4.68
1541 4305 3.350219 AATGGTGCTGAAATCGGTACT 57.650 42.857 9.79 0.00 37.86 2.73
1580 4344 2.730090 CGCTAAGCCTCGTCGACTTTTA 60.730 50.000 14.70 4.35 0.00 1.52
1644 4415 4.250464 TGCGTTTCGATTTAGGATGAAGT 58.750 39.130 0.00 0.00 0.00 3.01
1648 4419 5.447279 CGTTTCGATTTAGGATGAAGTTGGG 60.447 44.000 0.00 0.00 0.00 4.12
1669 4440 4.270808 GGGTGAAAAGTGCAGATTTTGTTG 59.729 41.667 12.92 0.00 30.22 3.33
1704 4475 4.002906 TGATTGCTTGGTTCTAGTCGTT 57.997 40.909 0.00 0.00 0.00 3.85
1711 4482 5.761234 TGCTTGGTTCTAGTCGTTGTTTATT 59.239 36.000 0.00 0.00 0.00 1.40
1713 4484 7.095523 TGCTTGGTTCTAGTCGTTGTTTATTAC 60.096 37.037 0.00 0.00 0.00 1.89
1715 4486 7.878477 TGGTTCTAGTCGTTGTTTATTACTG 57.122 36.000 0.00 0.00 0.00 2.74
1716 4487 7.436118 TGGTTCTAGTCGTTGTTTATTACTGT 58.564 34.615 0.00 0.00 0.00 3.55
1718 4489 7.596248 GGTTCTAGTCGTTGTTTATTACTGTGA 59.404 37.037 0.00 0.00 0.00 3.58
1719 4490 9.136952 GTTCTAGTCGTTGTTTATTACTGTGAT 57.863 33.333 0.00 0.00 0.00 3.06
1733 4504 0.320050 TGTGATGACGGCAAGCTGTA 59.680 50.000 6.49 0.00 35.39 2.74
1750 4521 2.802816 CTGTACTGTGAGCCAACACTTC 59.197 50.000 0.00 0.00 40.87 3.01
1751 4522 2.434336 TGTACTGTGAGCCAACACTTCT 59.566 45.455 0.00 0.00 40.87 2.85
1805 4576 5.808366 TCAGTATATCTTCTCGGCCAAAT 57.192 39.130 2.24 0.00 0.00 2.32
1834 4605 5.186021 TGTTTTGACCTTGCCAGAAAACTTA 59.814 36.000 11.92 0.00 37.39 2.24
1835 4606 4.911514 TTGACCTTGCCAGAAAACTTAC 57.088 40.909 0.00 0.00 0.00 2.34
1839 4610 4.020543 ACCTTGCCAGAAAACTTACACAA 58.979 39.130 0.00 0.00 0.00 3.33
1842 4613 6.048509 CCTTGCCAGAAAACTTACACAAAAT 58.951 36.000 0.00 0.00 0.00 1.82
1843 4614 6.018832 CCTTGCCAGAAAACTTACACAAAATG 60.019 38.462 0.00 0.00 0.00 2.32
1844 4615 4.808364 TGCCAGAAAACTTACACAAAATGC 59.192 37.500 0.00 0.00 0.00 3.56
1845 4616 5.049828 GCCAGAAAACTTACACAAAATGCT 58.950 37.500 0.00 0.00 0.00 3.79
1846 4617 5.050837 GCCAGAAAACTTACACAAAATGCTG 60.051 40.000 0.00 0.00 0.00 4.41
1880 4698 4.821805 CGTTTCTGGCCCACATATAGAAAT 59.178 41.667 13.45 0.00 38.95 2.17
1961 4780 4.269523 TGGCAGGGCAGAAACGCT 62.270 61.111 0.00 0.00 0.00 5.07
1972 4791 1.601903 CAGAAACGCTAAACCACAGCA 59.398 47.619 0.00 0.00 39.04 4.41
1982 4801 0.466543 AACCACAGCACGTTACTGGA 59.533 50.000 17.27 0.00 39.55 3.86
1983 4802 0.466543 ACCACAGCACGTTACTGGAA 59.533 50.000 17.27 0.00 39.55 3.53
1984 4803 1.134340 ACCACAGCACGTTACTGGAAA 60.134 47.619 17.27 0.00 39.55 3.13
1985 4804 1.531149 CCACAGCACGTTACTGGAAAG 59.469 52.381 17.27 6.41 39.55 2.62
1986 4805 2.210116 CACAGCACGTTACTGGAAAGT 58.790 47.619 17.27 0.00 39.55 2.66
1987 4806 2.032894 CACAGCACGTTACTGGAAAGTG 60.033 50.000 13.44 13.44 46.64 3.16
1988 4807 1.531149 CAGCACGTTACTGGAAAGTGG 59.469 52.381 18.22 1.50 44.79 4.00
2029 4848 1.172180 TGCTGCCCCAAGAAGAAACG 61.172 55.000 0.00 0.00 0.00 3.60
2043 4862 0.031994 GAAACGCCATTGCTTGTGGT 59.968 50.000 4.86 0.00 39.01 4.16
2097 4916 4.571176 GTCTATTTAGGGAAGAAACGCTGG 59.429 45.833 0.00 0.00 34.93 4.85
2181 5000 5.069648 TCAGATCGTGCTAGAAAATCTGGAT 59.930 40.000 18.21 0.82 42.22 3.41
2202 5021 5.537674 GGATGGGTTCAGATCATGCTAAAAT 59.462 40.000 0.00 0.00 0.00 1.82
2255 5074 4.932200 GCCTATCTTCTCAACCAATATCCG 59.068 45.833 0.00 0.00 0.00 4.18
2273 5092 9.051679 CAATATCCGAATCCAGTACATTAAACA 57.948 33.333 0.00 0.00 0.00 2.83
2414 5233 3.213506 CCAATATCCGAATCCAGCACAA 58.786 45.455 0.00 0.00 0.00 3.33
2430 5249 1.135803 CACAATAAACGGACGGCTTGG 60.136 52.381 0.00 0.00 0.00 3.61
2443 5262 1.557269 GGCTTGGGAGAGGCAGAGAA 61.557 60.000 0.00 0.00 41.49 2.87
2447 5266 0.178921 TGGGAGAGGCAGAGAACACT 60.179 55.000 0.00 0.00 0.00 3.55
2464 5283 7.482169 AGAACACTGTCTCTAATTATGTGGA 57.518 36.000 0.00 0.00 0.00 4.02
2496 5315 6.840780 AACTATGAATGTTCTGGGAAAAGG 57.159 37.500 0.00 0.00 0.00 3.11
2497 5316 5.892348 ACTATGAATGTTCTGGGAAAAGGT 58.108 37.500 0.00 0.00 0.00 3.50
2573 5392 0.842030 ATGGACCTGGTGCTCCTGAA 60.842 55.000 19.43 0.00 35.11 3.02
2579 5398 0.323178 CTGGTGCTCCTGAAATGGCT 60.323 55.000 6.34 0.00 35.11 4.75
2681 5500 4.700700 GTTTTCTGCGTACTGGGGTATAT 58.299 43.478 0.00 0.00 0.00 0.86
2710 5529 9.362539 CATCCTTTTTCCTGATTACTCATTTTG 57.637 33.333 0.00 0.00 0.00 2.44
2967 5787 1.348064 TCCCTCCTGATTGTGAACGT 58.652 50.000 0.00 0.00 0.00 3.99
3033 5853 1.528586 CTCTGCACTTGTTGTCCTTCG 59.471 52.381 0.00 0.00 0.00 3.79
3044 5866 4.839121 TGTTGTCCTTCGTAATATGCCTT 58.161 39.130 0.00 0.00 0.00 4.35
3048 5870 5.680619 TGTCCTTCGTAATATGCCTTCATT 58.319 37.500 0.00 0.00 34.22 2.57
3119 5941 2.230660 GTTGGTTTTCAGGAGGTGAGG 58.769 52.381 0.00 0.00 36.21 3.86
3155 5977 5.246203 AGAACCAAGACATGTAAGTGAGCTA 59.754 40.000 0.00 0.00 0.00 3.32
3230 6052 1.174712 TTTGCTTCTGACAGCCTGGC 61.175 55.000 11.65 11.65 39.25 4.85
3317 6139 1.701704 CTTTGCAAGGTGAAATCGGC 58.298 50.000 0.00 0.00 0.00 5.54
3341 6163 5.985530 CGAACTTGGCATGAATAGATACTCA 59.014 40.000 7.45 0.00 0.00 3.41
3342 6164 6.648310 CGAACTTGGCATGAATAGATACTCAT 59.352 38.462 7.45 0.00 32.40 2.90
3346 6168 7.994911 ACTTGGCATGAATAGATACTCATCAAA 59.005 33.333 7.45 0.00 33.21 2.69
3350 6172 9.494271 GGCATGAATAGATACTCATCAAACTAA 57.506 33.333 0.00 0.00 33.21 2.24
3398 6236 8.846423 ACTCCCTCTAAAGAAATCTAAGATCA 57.154 34.615 0.00 0.00 0.00 2.92
3592 6446 2.931969 GCCAAAAGCCAATATTGTCAGC 59.068 45.455 14.25 10.35 34.35 4.26
3600 6454 3.922240 GCCAATATTGTCAGCTTGTGTTG 59.078 43.478 14.25 0.00 0.00 3.33
3671 6525 4.485163 GTGTGAAGTAATTGCCCAACATC 58.515 43.478 0.00 0.00 0.00 3.06
3737 6593 4.835284 TGGTGATTATGCTACTTGGTGA 57.165 40.909 0.00 0.00 0.00 4.02
3759 6615 8.099537 GGTGATAGATGATGTTCAGGTGATAAT 58.900 37.037 0.00 0.00 0.00 1.28
3762 6618 5.068636 AGATGATGTTCAGGTGATAATGCC 58.931 41.667 0.00 0.00 0.00 4.40
3870 6733 8.879759 CCGTCTATTGTTAATACAAGATTGTGT 58.120 33.333 8.46 0.00 46.71 3.72
3883 6746 0.311790 ATTGTGTTGTGCCTTGCTCG 59.688 50.000 0.00 0.00 0.00 5.03
3889 6752 0.679505 TTGTGCCTTGCTCGTACTCT 59.320 50.000 0.00 0.00 0.00 3.24
3926 6789 4.021544 GTCTGTCATTTTGCCACCCATTTA 60.022 41.667 0.00 0.00 0.00 1.40
3927 6790 4.220382 TCTGTCATTTTGCCACCCATTTAG 59.780 41.667 0.00 0.00 0.00 1.85
3928 6791 3.261580 GTCATTTTGCCACCCATTTAGC 58.738 45.455 0.00 0.00 0.00 3.09
3929 6792 2.902486 TCATTTTGCCACCCATTTAGCA 59.098 40.909 0.00 0.00 0.00 3.49
3931 6794 3.399440 TTTTGCCACCCATTTAGCAAG 57.601 42.857 0.00 0.00 45.18 4.01
3940 6806 6.663523 GCCACCCATTTAGCAAGGTATATTAT 59.336 38.462 0.00 0.00 0.00 1.28
3953 6819 7.775093 GCAAGGTATATTATGCCCTGATATGAA 59.225 37.037 12.16 0.00 35.38 2.57
3960 7246 3.838244 TGCCCTGATATGAACACTACC 57.162 47.619 0.00 0.00 0.00 3.18
3962 7248 2.438021 GCCCTGATATGAACACTACCCA 59.562 50.000 0.00 0.00 0.00 4.51
3988 7274 0.661552 ATGCTTGCTGCGCTATTCTG 59.338 50.000 9.73 0.00 46.63 3.02
3993 7279 3.803886 CTGCGCTATTCTGCTGCA 58.196 55.556 9.73 0.88 38.99 4.41
3997 7283 0.247974 GCGCTATTCTGCTGCACTTG 60.248 55.000 0.00 0.00 34.48 3.16
3999 7285 1.061711 CGCTATTCTGCTGCACTTGTC 59.938 52.381 0.00 0.00 0.00 3.18
4009 7295 0.681733 TGCACTTGTCCCAGAGAGAC 59.318 55.000 0.00 0.00 34.72 3.36
4019 7305 0.038159 CCAGAGAGACGGTTGGTGAC 60.038 60.000 0.00 0.00 0.00 3.67
4042 7328 5.122396 ACCAGTCGCTCATTGTTAATTTCTC 59.878 40.000 0.00 0.00 0.00 2.87
4081 7367 3.455910 AGCTAGTCAAGGGCAATGTATGA 59.544 43.478 0.00 0.00 0.00 2.15
4085 7371 3.440173 AGTCAAGGGCAATGTATGAAACG 59.560 43.478 0.00 0.00 0.00 3.60
4086 7372 2.163412 TCAAGGGCAATGTATGAAACGC 59.837 45.455 0.00 0.00 0.00 4.84
4094 7380 4.437255 GCAATGTATGAAACGCACTCATGA 60.437 41.667 0.00 0.00 35.21 3.07
4097 7383 5.681337 TGTATGAAACGCACTCATGAAAA 57.319 34.783 0.00 0.00 35.21 2.29
4176 7462 7.090173 TCAATGAACAGCAAACTAATTTAGGC 58.910 34.615 8.26 2.35 0.00 3.93
4177 7463 6.588719 ATGAACAGCAAACTAATTTAGGCA 57.411 33.333 8.26 0.00 0.00 4.75
4178 7464 6.588719 TGAACAGCAAACTAATTTAGGCAT 57.411 33.333 8.26 0.00 0.00 4.40
4179 7465 7.695480 TGAACAGCAAACTAATTTAGGCATA 57.305 32.000 8.26 0.00 0.00 3.14
4180 7466 7.535139 TGAACAGCAAACTAATTTAGGCATAC 58.465 34.615 8.26 0.00 0.00 2.39
4195 7489 3.976654 AGGCATACCATGATCTAGTGGTT 59.023 43.478 18.60 8.09 46.22 3.67
4202 7496 5.615289 ACCATGATCTAGTGGTTATTCTGC 58.385 41.667 10.86 0.00 46.22 4.26
4261 7555 5.951204 TGGTTAGGCATATCATGAATGGAA 58.049 37.500 0.00 0.00 0.00 3.53
4299 7596 5.391312 AGCTGAAACACTTGTTCTGTTTT 57.609 34.783 0.00 0.00 41.01 2.43
4301 7598 4.201618 GCTGAAACACTTGTTCTGTTTTGC 60.202 41.667 0.00 0.00 41.01 3.68
4437 7738 0.396435 ATGACCGCAGTTCACCTCAA 59.604 50.000 0.00 0.00 0.00 3.02
4614 7918 2.429930 CTCTTGGCGGGGTGACAA 59.570 61.111 0.00 0.00 45.67 3.18
4672 7977 1.803334 TAATGTGTGGAAGTGCGACC 58.197 50.000 0.00 0.00 0.00 4.79
4765 8074 6.338146 CCTCTACCGTTCTGAAATCATTACA 58.662 40.000 0.00 0.00 0.00 2.41
4771 8101 6.264518 ACCGTTCTGAAATCATTACAACCTTT 59.735 34.615 0.00 0.00 0.00 3.11
4774 8104 8.023128 CGTTCTGAAATCATTACAACCTTTGAT 58.977 33.333 0.00 0.00 0.00 2.57
4816 8146 2.356673 GAGGAAAACGACCGCGGT 60.357 61.111 34.89 34.89 43.17 5.68
4851 8187 5.632244 TGTCTGAATCATGTGGAATTGTG 57.368 39.130 0.00 0.00 0.00 3.33
4877 8213 4.189639 ACAAACGGTTTTGCTGGTTAAA 57.810 36.364 2.79 0.00 45.32 1.52
4904 8240 4.162131 TGTTGCTCCACATAATCTGCTCTA 59.838 41.667 0.00 0.00 0.00 2.43
4920 8264 2.474359 GCTCTAGTGTGCTGCATTATCG 59.526 50.000 5.27 0.00 0.00 2.92
4978 8322 8.749499 CAGTTTCTGCTGTTATTTCTTCTTTTG 58.251 33.333 0.00 0.00 0.00 2.44
4985 8329 6.084326 TGTTATTTCTTCTTTTGAGGTGGC 57.916 37.500 0.00 0.00 0.00 5.01
5015 8359 0.958091 GTTTGCACTATGGGCACACA 59.042 50.000 6.25 0.00 40.64 3.72
5028 8372 6.849085 ATGGGCACACAGTTTTATTCATTA 57.151 33.333 0.00 0.00 0.00 1.90
5040 8384 8.885722 CAGTTTTATTCATTATTGGCAGCATTT 58.114 29.630 0.00 0.00 0.00 2.32
5052 8396 6.482898 TTGGCAGCATTTATCCATTATGTT 57.517 33.333 0.00 0.00 0.00 2.71
5057 8401 6.580041 GCAGCATTTATCCATTATGTTTCGAG 59.420 38.462 0.00 0.00 0.00 4.04
5067 8411 7.109501 TCCATTATGTTTCGAGGATCAAAGAA 58.890 34.615 0.00 0.00 33.17 2.52
5079 8423 9.189156 TCGAGGATCAAAGAATTGGAAAAATAT 57.811 29.630 0.00 0.00 37.15 1.28
5144 8489 2.489971 TCTTGCTGTTCGGTAAACCAG 58.510 47.619 0.00 0.00 37.03 4.00
5145 8490 0.948678 TTGCTGTTCGGTAAACCAGC 59.051 50.000 3.65 3.65 39.95 4.85
5148 8493 0.511221 CTGTTCGGTAAACCAGCACG 59.489 55.000 0.00 0.00 37.03 5.34
5185 8530 5.068460 TGTGTTCTGTTATTTTTCACCAGGG 59.932 40.000 0.00 0.00 0.00 4.45
5208 8553 4.021925 GCGGTGACTGCCCTCCTT 62.022 66.667 4.74 0.00 0.00 3.36
5216 8561 0.111253 ACTGCCCTCCTTTGTTCCAG 59.889 55.000 0.00 0.00 0.00 3.86
5418 11689 7.307751 CCTTTTTGAGCAATAGTCGACAAGTAA 60.308 37.037 19.50 0.00 0.00 2.24
5453 11724 3.650950 GACAGGGCAGAGGGGCAA 61.651 66.667 0.00 0.00 45.66 4.52
5467 11738 4.228210 AGAGGGGCAAATTGTCTTCATCTA 59.772 41.667 0.00 0.00 0.00 1.98
5519 11790 1.079336 GTTCAGGCTACCCGGTGAC 60.079 63.158 0.00 0.00 35.76 3.67
5540 11812 2.476619 CGAGACGAATTACATCCATGCC 59.523 50.000 0.00 0.00 0.00 4.40
5542 11814 4.558697 CGAGACGAATTACATCCATGCCTA 60.559 45.833 0.00 0.00 0.00 3.93
5659 11931 1.661498 TTTGCAGCTGCGTGGTTGAA 61.661 50.000 32.11 17.00 45.83 2.69
5672 11944 4.084223 GCGTGGTTGAAAGTCGAAATCTTA 60.084 41.667 0.00 0.00 0.00 2.10
5689 11961 8.740369 CGAAATCTTATGAAATCTGCAACATTC 58.260 33.333 0.00 0.00 0.00 2.67
5696 11968 3.837213 AATCTGCAACATTCCGACAAG 57.163 42.857 0.00 0.00 0.00 3.16
5711 11983 3.483869 AAGCGGGGAGAGGATGGC 61.484 66.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.948145 CCTCCAATGCAATGAAAATCAAAAATA 58.052 29.630 2.50 0.00 0.00 1.40
6 7 7.449086 ACCTCCAATGCAATGAAAATCAAAAAT 59.551 29.630 2.50 0.00 0.00 1.82
7 8 6.771749 ACCTCCAATGCAATGAAAATCAAAAA 59.228 30.769 2.50 0.00 0.00 1.94
8 9 6.297582 ACCTCCAATGCAATGAAAATCAAAA 58.702 32.000 2.50 0.00 0.00 2.44
9 10 5.867330 ACCTCCAATGCAATGAAAATCAAA 58.133 33.333 2.50 0.00 0.00 2.69
10 11 5.246656 AGACCTCCAATGCAATGAAAATCAA 59.753 36.000 2.50 0.00 0.00 2.57
11 12 4.773674 AGACCTCCAATGCAATGAAAATCA 59.226 37.500 2.50 0.00 0.00 2.57
12 13 5.334724 AGACCTCCAATGCAATGAAAATC 57.665 39.130 2.50 0.00 0.00 2.17
13 14 5.750352 AAGACCTCCAATGCAATGAAAAT 57.250 34.783 2.50 0.00 0.00 1.82
14 15 5.511202 GGAAAGACCTCCAATGCAATGAAAA 60.511 40.000 2.50 0.00 35.36 2.29
15 16 4.021192 GGAAAGACCTCCAATGCAATGAAA 60.021 41.667 2.50 0.00 35.36 2.69
16 17 3.511146 GGAAAGACCTCCAATGCAATGAA 59.489 43.478 2.50 0.00 35.36 2.57
17 18 3.091545 GGAAAGACCTCCAATGCAATGA 58.908 45.455 2.50 0.00 35.36 2.57
18 19 2.827322 TGGAAAGACCTCCAATGCAATG 59.173 45.455 0.00 0.00 42.69 2.82
19 20 3.173953 TGGAAAGACCTCCAATGCAAT 57.826 42.857 0.00 0.00 42.69 3.56
20 21 2.673775 TGGAAAGACCTCCAATGCAA 57.326 45.000 0.00 0.00 42.69 4.08
30 31 1.645710 TGAGGAGAGGTGGAAAGACC 58.354 55.000 0.00 0.00 39.54 3.85
31 32 3.604582 CAATGAGGAGAGGTGGAAAGAC 58.395 50.000 0.00 0.00 0.00 3.01
32 33 2.026822 GCAATGAGGAGAGGTGGAAAGA 60.027 50.000 0.00 0.00 0.00 2.52
33 34 2.290514 TGCAATGAGGAGAGGTGGAAAG 60.291 50.000 0.00 0.00 0.00 2.62
34 35 1.704628 TGCAATGAGGAGAGGTGGAAA 59.295 47.619 0.00 0.00 0.00 3.13
35 36 1.361204 TGCAATGAGGAGAGGTGGAA 58.639 50.000 0.00 0.00 0.00 3.53
36 37 1.361204 TTGCAATGAGGAGAGGTGGA 58.639 50.000 0.00 0.00 0.00 4.02
37 38 2.205022 TTTGCAATGAGGAGAGGTGG 57.795 50.000 0.00 0.00 0.00 4.61
38 39 3.618351 AGATTTGCAATGAGGAGAGGTG 58.382 45.455 0.00 0.00 0.00 4.00
39 40 3.371380 GGAGATTTGCAATGAGGAGAGGT 60.371 47.826 0.00 0.00 0.00 3.85
40 41 3.212685 GGAGATTTGCAATGAGGAGAGG 58.787 50.000 0.00 0.00 0.00 3.69
41 42 3.882444 TGGAGATTTGCAATGAGGAGAG 58.118 45.455 0.00 0.00 0.00 3.20
42 43 4.458397 GATGGAGATTTGCAATGAGGAGA 58.542 43.478 0.00 0.00 0.00 3.71
43 44 3.568853 GGATGGAGATTTGCAATGAGGAG 59.431 47.826 0.00 0.00 0.00 3.69
44 45 3.053470 TGGATGGAGATTTGCAATGAGGA 60.053 43.478 0.00 0.00 0.00 3.71
45 46 3.293337 TGGATGGAGATTTGCAATGAGG 58.707 45.455 0.00 0.00 0.00 3.86
46 47 4.158949 TGTTGGATGGAGATTTGCAATGAG 59.841 41.667 0.00 0.00 0.00 2.90
47 48 4.087907 TGTTGGATGGAGATTTGCAATGA 58.912 39.130 0.00 0.00 0.00 2.57
48 49 4.459390 TGTTGGATGGAGATTTGCAATG 57.541 40.909 0.00 0.00 0.00 2.82
49 50 5.424757 CATTGTTGGATGGAGATTTGCAAT 58.575 37.500 0.00 0.00 0.00 3.56
50 51 4.823157 CATTGTTGGATGGAGATTTGCAA 58.177 39.130 0.00 0.00 0.00 4.08
51 52 4.459390 CATTGTTGGATGGAGATTTGCA 57.541 40.909 0.00 0.00 0.00 4.08
61 62 2.415776 GGTTTGCACCATTGTTGGATG 58.584 47.619 0.00 0.00 46.92 3.51
62 63 2.837532 GGTTTGCACCATTGTTGGAT 57.162 45.000 0.00 0.00 46.92 3.41
72 73 2.607180 GACAACACATTTGGTTTGCACC 59.393 45.455 0.00 0.00 44.56 5.01
73 74 3.520569 AGACAACACATTTGGTTTGCAC 58.479 40.909 0.00 0.00 0.00 4.57
74 75 3.883830 AGACAACACATTTGGTTTGCA 57.116 38.095 0.00 0.00 0.00 4.08
75 76 4.033932 GGAAAGACAACACATTTGGTTTGC 59.966 41.667 0.00 0.00 0.00 3.68
76 77 4.570369 GGGAAAGACAACACATTTGGTTTG 59.430 41.667 0.00 0.00 0.00 2.93
77 78 4.469586 AGGGAAAGACAACACATTTGGTTT 59.530 37.500 0.00 0.00 0.00 3.27
78 79 4.030216 AGGGAAAGACAACACATTTGGTT 58.970 39.130 0.00 0.00 0.00 3.67
79 80 3.636764 GAGGGAAAGACAACACATTTGGT 59.363 43.478 0.00 0.00 0.00 3.67
80 81 3.005791 GGAGGGAAAGACAACACATTTGG 59.994 47.826 0.00 0.00 0.00 3.28
81 82 3.636300 TGGAGGGAAAGACAACACATTTG 59.364 43.478 0.00 0.00 0.00 2.32
82 83 3.636764 GTGGAGGGAAAGACAACACATTT 59.363 43.478 0.00 0.00 0.00 2.32
83 84 3.222603 GTGGAGGGAAAGACAACACATT 58.777 45.455 0.00 0.00 0.00 2.71
84 85 2.489073 GGTGGAGGGAAAGACAACACAT 60.489 50.000 0.00 0.00 0.00 3.21
85 86 1.133915 GGTGGAGGGAAAGACAACACA 60.134 52.381 0.00 0.00 0.00 3.72
86 87 1.605753 GGTGGAGGGAAAGACAACAC 58.394 55.000 0.00 0.00 0.00 3.32
87 88 0.476771 GGGTGGAGGGAAAGACAACA 59.523 55.000 0.00 0.00 0.00 3.33
88 89 0.771755 AGGGTGGAGGGAAAGACAAC 59.228 55.000 0.00 0.00 0.00 3.32
89 90 1.423921 GAAGGGTGGAGGGAAAGACAA 59.576 52.381 0.00 0.00 0.00 3.18
90 91 1.064825 GAAGGGTGGAGGGAAAGACA 58.935 55.000 0.00 0.00 0.00 3.41
91 92 1.363246 AGAAGGGTGGAGGGAAAGAC 58.637 55.000 0.00 0.00 0.00 3.01
92 93 1.985895 GAAGAAGGGTGGAGGGAAAGA 59.014 52.381 0.00 0.00 0.00 2.52
93 94 1.988846 AGAAGAAGGGTGGAGGGAAAG 59.011 52.381 0.00 0.00 0.00 2.62
94 95 2.133858 AGAAGAAGGGTGGAGGGAAA 57.866 50.000 0.00 0.00 0.00 3.13
95 96 2.133858 AAGAAGAAGGGTGGAGGGAA 57.866 50.000 0.00 0.00 0.00 3.97
96 97 1.985895 GAAAGAAGAAGGGTGGAGGGA 59.014 52.381 0.00 0.00 0.00 4.20
97 98 1.004862 GGAAAGAAGAAGGGTGGAGGG 59.995 57.143 0.00 0.00 0.00 4.30
98 99 1.988846 AGGAAAGAAGAAGGGTGGAGG 59.011 52.381 0.00 0.00 0.00 4.30
99 100 3.797559 AAGGAAAGAAGAAGGGTGGAG 57.202 47.619 0.00 0.00 0.00 3.86
100 101 3.832527 CAAAGGAAAGAAGAAGGGTGGA 58.167 45.455 0.00 0.00 0.00 4.02
101 102 2.297315 GCAAAGGAAAGAAGAAGGGTGG 59.703 50.000 0.00 0.00 0.00 4.61
102 103 2.297315 GGCAAAGGAAAGAAGAAGGGTG 59.703 50.000 0.00 0.00 0.00 4.61
103 104 2.598565 GGCAAAGGAAAGAAGAAGGGT 58.401 47.619 0.00 0.00 0.00 4.34
104 105 1.895798 GGGCAAAGGAAAGAAGAAGGG 59.104 52.381 0.00 0.00 0.00 3.95
105 106 2.881734 AGGGCAAAGGAAAGAAGAAGG 58.118 47.619 0.00 0.00 0.00 3.46
106 107 6.405278 TTTAAGGGCAAAGGAAAGAAGAAG 57.595 37.500 0.00 0.00 0.00 2.85
107 108 6.800072 TTTTAAGGGCAAAGGAAAGAAGAA 57.200 33.333 0.00 0.00 0.00 2.52
108 109 6.800072 TTTTTAAGGGCAAAGGAAAGAAGA 57.200 33.333 0.00 0.00 0.00 2.87
109 110 7.933577 AGAATTTTTAAGGGCAAAGGAAAGAAG 59.066 33.333 0.00 0.00 0.00 2.85
110 111 7.801104 AGAATTTTTAAGGGCAAAGGAAAGAA 58.199 30.769 0.00 0.00 0.00 2.52
111 112 7.373617 AGAATTTTTAAGGGCAAAGGAAAGA 57.626 32.000 0.00 0.00 0.00 2.52
112 113 6.366061 CGAGAATTTTTAAGGGCAAAGGAAAG 59.634 38.462 0.00 0.00 0.00 2.62
113 114 6.041069 TCGAGAATTTTTAAGGGCAAAGGAAA 59.959 34.615 0.00 0.00 0.00 3.13
114 115 5.536916 TCGAGAATTTTTAAGGGCAAAGGAA 59.463 36.000 0.00 0.00 0.00 3.36
115 116 5.074115 TCGAGAATTTTTAAGGGCAAAGGA 58.926 37.500 0.00 0.00 0.00 3.36
116 117 5.385509 TCGAGAATTTTTAAGGGCAAAGG 57.614 39.130 0.00 0.00 0.00 3.11
117 118 4.859245 GCTCGAGAATTTTTAAGGGCAAAG 59.141 41.667 18.75 0.00 0.00 2.77
118 119 4.279671 TGCTCGAGAATTTTTAAGGGCAAA 59.720 37.500 18.75 0.00 0.00 3.68
119 120 3.823873 TGCTCGAGAATTTTTAAGGGCAA 59.176 39.130 18.75 0.00 0.00 4.52
120 121 3.417101 TGCTCGAGAATTTTTAAGGGCA 58.583 40.909 18.75 0.00 0.00 5.36
121 122 4.434713 TTGCTCGAGAATTTTTAAGGGC 57.565 40.909 18.75 0.00 0.00 5.19
122 123 4.800471 GCATTGCTCGAGAATTTTTAAGGG 59.200 41.667 18.75 0.78 0.00 3.95
123 124 4.496895 CGCATTGCTCGAGAATTTTTAAGG 59.503 41.667 18.75 0.00 0.00 2.69
124 125 5.088739 ACGCATTGCTCGAGAATTTTTAAG 58.911 37.500 18.75 0.75 0.00 1.85
125 126 5.041951 ACGCATTGCTCGAGAATTTTTAA 57.958 34.783 18.75 0.00 0.00 1.52
126 127 4.153296 TGACGCATTGCTCGAGAATTTTTA 59.847 37.500 18.75 0.00 0.00 1.52
127 128 3.058293 TGACGCATTGCTCGAGAATTTTT 60.058 39.130 18.75 0.00 0.00 1.94
128 129 2.483877 TGACGCATTGCTCGAGAATTTT 59.516 40.909 18.75 0.22 0.00 1.82
129 130 2.076100 TGACGCATTGCTCGAGAATTT 58.924 42.857 18.75 0.00 0.00 1.82
130 131 1.394917 GTGACGCATTGCTCGAGAATT 59.605 47.619 18.75 0.00 0.00 2.17
131 132 1.002366 GTGACGCATTGCTCGAGAAT 58.998 50.000 18.75 10.24 0.00 2.40
132 133 0.319469 TGTGACGCATTGCTCGAGAA 60.319 50.000 18.75 1.15 0.00 2.87
133 134 1.008875 GTGTGACGCATTGCTCGAGA 61.009 55.000 18.75 0.00 0.00 4.04
134 135 1.284297 TGTGTGACGCATTGCTCGAG 61.284 55.000 8.45 8.45 0.00 4.04
135 136 0.878086 TTGTGTGACGCATTGCTCGA 60.878 50.000 7.12 0.00 0.00 4.04
136 137 0.722469 GTTGTGTGACGCATTGCTCG 60.722 55.000 7.12 0.00 0.00 5.03
137 138 0.307453 TGTTGTGTGACGCATTGCTC 59.693 50.000 7.12 4.34 0.00 4.26
138 139 0.953727 ATGTTGTGTGACGCATTGCT 59.046 45.000 7.12 0.00 0.00 3.91
139 140 1.069022 AGATGTTGTGTGACGCATTGC 60.069 47.619 0.00 0.00 0.00 3.56
178 179 4.074627 TGTTGTTCCAACTCAATACGGA 57.925 40.909 8.41 0.00 0.00 4.69
225 257 7.828712 TCAACAATGTGCATCATAAGATCAAA 58.171 30.769 0.00 0.00 35.48 2.69
246 278 5.163581 CCATCACAAGATTTCCCATCTCAAC 60.164 44.000 0.00 0.00 30.20 3.18
308 340 6.752168 TGATGTATGTAGTGTGGATGATGAG 58.248 40.000 0.00 0.00 0.00 2.90
447 481 2.579201 CACCGCTAGGACCACCAG 59.421 66.667 0.00 0.00 41.02 4.00
488 522 0.752054 TACCGTTGTCGTCCAAGGTT 59.248 50.000 12.67 3.03 37.25 3.50
568 603 0.246635 AAGGCGTCGACTGCACTAAT 59.753 50.000 25.67 10.09 0.00 1.73
570 605 1.211969 GAAGGCGTCGACTGCACTA 59.788 57.895 25.67 0.00 0.00 2.74
573 608 0.944311 GAAAGAAGGCGTCGACTGCA 60.944 55.000 25.67 0.00 0.00 4.41
578 613 0.386858 CGTGAGAAAGAAGGCGTCGA 60.387 55.000 0.00 0.00 0.00 4.20
609 644 0.729116 CGCAAGATGCATCGGTCTTT 59.271 50.000 20.67 6.68 45.36 2.52
611 646 1.522355 CCGCAAGATGCATCGGTCT 60.522 57.895 20.67 0.82 45.36 3.85
620 655 1.197721 GAAAGTGGTCACCGCAAGATG 59.802 52.381 10.81 0.00 43.02 2.90
624 659 1.890041 CGGAAAGTGGTCACCGCAA 60.890 57.895 10.81 0.00 38.98 4.85
625 660 2.280524 CGGAAAGTGGTCACCGCA 60.281 61.111 10.81 0.00 38.98 5.69
639 674 2.358247 GCAAAGAAGCCCGTCGGA 60.358 61.111 14.39 0.00 0.00 4.55
670 705 0.168788 AACAATGAACATCGCGCCAG 59.831 50.000 0.00 0.00 0.00 4.85
735 774 6.536941 GGTATCACAAAACTTTGCCTCAAAAA 59.463 34.615 2.07 0.00 41.79 1.94
759 799 2.188524 CGTTCGACATGAGTGATGAGG 58.811 52.381 0.00 0.00 35.80 3.86
978 3694 1.687493 GGAGGGAGAGAGTGGTGGG 60.687 68.421 0.00 0.00 0.00 4.61
1224 3970 0.605083 AAGGAACGGTTCGGGTAGAC 59.395 55.000 14.23 0.00 0.00 2.59
1225 3971 0.890683 GAAGGAACGGTTCGGGTAGA 59.109 55.000 14.23 0.00 0.00 2.59
1227 3973 0.890683 GAGAAGGAACGGTTCGGGTA 59.109 55.000 14.23 0.00 0.00 3.69
1228 3974 1.670015 GAGAAGGAACGGTTCGGGT 59.330 57.895 14.23 2.38 0.00 5.28
1231 3977 1.445582 CGGGAGAAGGAACGGTTCG 60.446 63.158 14.23 0.00 0.00 3.95
1234 3980 3.703127 GGCGGGAGAAGGAACGGT 61.703 66.667 0.00 0.00 0.00 4.83
1266 4012 1.078001 GGCGCTAAAACCCTAGGCA 60.078 57.895 7.64 0.00 0.00 4.75
1268 4014 2.178235 GCGGCGCTAAAACCCTAGG 61.178 63.158 26.86 0.06 0.00 3.02
1383 4138 1.004440 AGAGCTCAGGCAACCGAAC 60.004 57.895 17.77 0.00 41.70 3.95
1384 4139 1.004560 CAGAGCTCAGGCAACCGAA 60.005 57.895 17.77 0.00 41.70 4.30
1385 4140 2.659016 CAGAGCTCAGGCAACCGA 59.341 61.111 17.77 0.00 41.70 4.69
1386 4141 3.123620 GCAGAGCTCAGGCAACCG 61.124 66.667 21.31 0.10 41.70 4.44
1387 4142 3.123620 CGCAGAGCTCAGGCAACC 61.124 66.667 24.34 1.70 41.70 3.77
1388 4143 3.797546 GCGCAGAGCTCAGGCAAC 61.798 66.667 24.34 14.86 44.04 4.17
1406 4161 4.700365 TCGCGGCAGTGACAGTCG 62.700 66.667 6.13 0.00 37.12 4.18
1440 4195 0.461135 CCCTGGATGCAAAATTCCCG 59.539 55.000 1.64 0.00 0.00 5.14
1444 4199 0.904394 ACGCCCCTGGATGCAAAATT 60.904 50.000 0.00 0.00 0.00 1.82
1446 4201 0.679640 CTACGCCCCTGGATGCAAAA 60.680 55.000 0.00 0.00 0.00 2.44
1475 4230 0.243636 CGCTTTTTCAAGGGCCGAAT 59.756 50.000 0.00 0.00 36.27 3.34
1484 4239 3.491267 CGCAAATTTACCCGCTTTTTCAA 59.509 39.130 0.00 0.00 0.00 2.69
1490 4245 1.154112 CGCGCAAATTTACCCGCTT 60.154 52.632 20.36 0.00 43.84 4.68
1491 4246 1.373590 ATCGCGCAAATTTACCCGCT 61.374 50.000 20.36 7.04 43.84 5.52
1493 4248 0.655733 AGATCGCGCAAATTTACCCG 59.344 50.000 8.75 0.00 0.00 5.28
1494 4249 1.940613 AGAGATCGCGCAAATTTACCC 59.059 47.619 8.75 0.00 0.00 3.69
1557 4321 3.436924 TCGACGAGGCTTAGCGCA 61.437 61.111 11.47 0.00 41.67 6.09
1624 4394 5.447279 CCCAACTTCATCCTAAATCGAAACG 60.447 44.000 0.00 0.00 0.00 3.60
1644 4415 4.081198 ACAAAATCTGCACTTTTCACCCAA 60.081 37.500 0.36 0.00 0.00 4.12
1648 4419 5.576384 TCACAACAAAATCTGCACTTTTCAC 59.424 36.000 0.36 0.00 0.00 3.18
1669 4440 6.258507 ACCAAGCAATCAAATCAAAAGTTCAC 59.741 34.615 0.00 0.00 0.00 3.18
1704 4475 4.570930 TGCCGTCATCACAGTAATAAACA 58.429 39.130 0.00 0.00 0.00 2.83
1711 4482 0.608130 AGCTTGCCGTCATCACAGTA 59.392 50.000 0.00 0.00 0.00 2.74
1713 4484 0.952497 ACAGCTTGCCGTCATCACAG 60.952 55.000 0.00 0.00 0.00 3.66
1715 4486 0.721718 GTACAGCTTGCCGTCATCAC 59.278 55.000 0.00 0.00 0.00 3.06
1716 4487 0.608130 AGTACAGCTTGCCGTCATCA 59.392 50.000 0.00 0.00 0.00 3.07
1718 4489 0.321671 ACAGTACAGCTTGCCGTCAT 59.678 50.000 0.00 0.00 0.00 3.06
1719 4490 0.599991 CACAGTACAGCTTGCCGTCA 60.600 55.000 0.00 0.00 0.00 4.35
1733 4504 1.210478 ACAGAAGTGTTGGCTCACAGT 59.790 47.619 13.66 4.49 40.37 3.55
1750 4521 4.095483 GGCATGGACAACTCTAATCAACAG 59.905 45.833 0.00 0.00 0.00 3.16
1751 4522 4.009675 GGCATGGACAACTCTAATCAACA 58.990 43.478 0.00 0.00 0.00 3.33
1760 4531 0.877071 CAGTGTGGCATGGACAACTC 59.123 55.000 0.00 0.00 0.00 3.01
1765 4536 0.598065 GAAACCAGTGTGGCATGGAC 59.402 55.000 12.41 0.00 42.67 4.02
1805 4576 2.426738 CTGGCAAGGTCAAAACAGTGAA 59.573 45.455 0.00 0.00 0.00 3.18
1834 4605 1.069049 GGAAGCCACAGCATTTTGTGT 59.931 47.619 5.54 0.00 45.44 3.72
1835 4606 1.068895 TGGAAGCCACAGCATTTTGTG 59.931 47.619 0.00 0.00 46.24 3.33
1893 4711 3.423154 GACCAGGCCAGAAACGCG 61.423 66.667 5.01 3.53 0.00 6.01
1961 4780 2.102757 TCCAGTAACGTGCTGTGGTTTA 59.897 45.455 16.07 0.00 32.41 2.01
1972 4791 2.867975 CGTTTCCACTTTCCAGTAACGT 59.132 45.455 0.00 0.00 37.57 3.99
1982 4801 2.841160 GCCACGGCGTTTCCACTTT 61.841 57.895 11.19 0.00 34.01 2.66
1983 4802 3.284449 GCCACGGCGTTTCCACTT 61.284 61.111 11.19 0.00 34.01 3.16
1988 4807 4.025401 CACAGGCCACGGCGTTTC 62.025 66.667 11.19 4.53 43.06 2.78
2007 4826 1.259609 TTCTTCTTGGGGCAGCAATG 58.740 50.000 0.00 0.00 0.00 2.82
2008 4827 1.620323 GTTTCTTCTTGGGGCAGCAAT 59.380 47.619 0.00 0.00 0.00 3.56
2029 4848 1.501169 GAAACACCACAAGCAATGGC 58.499 50.000 1.08 0.00 41.31 4.40
2063 4882 3.308117 CCCTAAATAGACAAGTGGCCACA 60.308 47.826 36.39 16.34 0.00 4.17
2097 4916 0.953960 CCTAGACACACCAAACCGGC 60.954 60.000 0.00 0.00 39.03 6.13
2181 5000 6.716628 GGATATTTTAGCATGATCTGAACCCA 59.283 38.462 0.00 0.00 0.00 4.51
2202 5021 7.252612 TCACTATTTTGACCTTGTCAGGATA 57.747 36.000 0.00 0.77 44.19 2.59
2255 5074 5.220605 GCCGTCTGTTTAATGTACTGGATTC 60.221 44.000 0.00 0.00 0.00 2.52
2273 5092 1.603236 CTGCCTCTCTCAAGCCGTCT 61.603 60.000 0.00 0.00 0.00 4.18
2414 5233 0.107848 CTCCCAAGCCGTCCGTTTAT 60.108 55.000 0.00 0.00 0.00 1.40
2430 5249 0.972883 ACAGTGTTCTCTGCCTCTCC 59.027 55.000 0.00 0.00 38.84 3.71
2443 5262 6.051717 GCATCCACATAATTAGAGACAGTGT 58.948 40.000 0.00 0.00 0.00 3.55
2458 5277 9.578576 ACATTCATAGTTTTATAGCATCCACAT 57.421 29.630 0.00 0.00 0.00 3.21
2460 5279 9.884465 GAACATTCATAGTTTTATAGCATCCAC 57.116 33.333 0.00 0.00 0.00 4.02
2464 5283 9.071276 CCCAGAACATTCATAGTTTTATAGCAT 57.929 33.333 0.00 0.00 0.00 3.79
2479 5298 3.057245 GCAGACCTTTTCCCAGAACATTC 60.057 47.826 0.00 0.00 0.00 2.67
2496 5315 5.858581 GGTCACAAGACATATTTTTGCAGAC 59.141 40.000 0.00 0.00 46.80 3.51
2497 5316 5.769662 AGGTCACAAGACATATTTTTGCAGA 59.230 36.000 0.00 0.00 46.80 4.26
2573 5392 1.072331 CGAGGGTAATAGCCAGCCATT 59.928 52.381 11.41 0.00 38.48 3.16
2579 5398 2.673258 TCATCACGAGGGTAATAGCCA 58.327 47.619 11.41 0.00 38.48 4.75
2681 5500 6.778821 TGAGTAATCAGGAAAAAGGATGACA 58.221 36.000 0.00 0.00 0.00 3.58
2731 5550 9.467258 CTGAATTTGCTGAAGATAAGAAAACAA 57.533 29.630 0.00 0.00 0.00 2.83
2732 5551 8.632679 ACTGAATTTGCTGAAGATAAGAAAACA 58.367 29.630 0.00 0.00 0.00 2.83
2733 5552 9.122613 GACTGAATTTGCTGAAGATAAGAAAAC 57.877 33.333 0.00 0.00 0.00 2.43
2937 5757 2.775418 TCAGGAGGGATGCCTTCAATA 58.225 47.619 14.99 0.00 32.12 1.90
3048 5870 3.117663 AGTGAAGGACCCACAGCTAAAAA 60.118 43.478 4.02 0.00 37.01 1.94
3059 5881 1.617322 GGTGGAAAAGTGAAGGACCC 58.383 55.000 0.00 0.00 0.00 4.46
3119 5941 5.646606 TGTCTTGGTTCTTTGTTTACAAGC 58.353 37.500 0.00 0.00 37.15 4.01
3155 5977 0.110486 AGACCTGACAAACGCCCAAT 59.890 50.000 0.00 0.00 0.00 3.16
3213 6035 2.033141 GCCAGGCTGTCAGAAGCA 59.967 61.111 14.43 0.00 45.43 3.91
3236 6058 3.485463 ACAAAACAGAGGACGATTGGA 57.515 42.857 0.00 0.00 0.00 3.53
3317 6139 5.985530 TGAGTATCTATTCATGCCAAGTTCG 59.014 40.000 0.00 0.00 34.92 3.95
3346 6168 9.780186 ACTAGTTAAGAGCAAACAGAATTTAGT 57.220 29.630 0.00 0.00 0.00 2.24
3350 6172 9.425577 GAGTACTAGTTAAGAGCAAACAGAATT 57.574 33.333 0.00 0.00 0.00 2.17
3361 6197 9.683870 TTCTTTAGAGGGAGTACTAGTTAAGAG 57.316 37.037 0.00 0.00 0.00 2.85
3488 6342 9.130661 TGGGACATGAATTATTCGAATTTATGT 57.869 29.630 17.19 16.43 44.33 2.29
3517 6371 6.072175 ACAATGTTACAAACACCTATGCGAAT 60.072 34.615 0.00 0.00 45.50 3.34
3592 6446 6.618287 TGAGTTTGATTCTACCAACACAAG 57.382 37.500 0.00 0.00 0.00 3.16
3737 6593 6.883217 GGCATTATCACCTGAACATCATCTAT 59.117 38.462 0.00 0.00 0.00 1.98
3771 6627 7.764901 CCTAGTCTCAAGTCCAGGTTATAAAAC 59.235 40.741 0.00 0.00 34.66 2.43
3781 6637 2.564947 ACAAGCCTAGTCTCAAGTCCAG 59.435 50.000 0.00 0.00 0.00 3.86
3852 6715 6.264292 AGGCACAACACAATCTTGTATTAACA 59.736 34.615 0.00 0.00 39.91 2.41
3858 6721 3.243367 GCAAGGCACAACACAATCTTGTA 60.243 43.478 0.00 0.00 39.91 2.41
3870 6733 0.679505 AGAGTACGAGCAAGGCACAA 59.320 50.000 0.00 0.00 0.00 3.33
3871 6734 0.679505 AAGAGTACGAGCAAGGCACA 59.320 50.000 0.00 0.00 0.00 4.57
3872 6735 1.071605 CAAGAGTACGAGCAAGGCAC 58.928 55.000 0.00 0.00 0.00 5.01
3873 6736 0.037326 CCAAGAGTACGAGCAAGGCA 60.037 55.000 0.00 0.00 0.00 4.75
3874 6737 0.246635 TCCAAGAGTACGAGCAAGGC 59.753 55.000 0.00 0.00 0.00 4.35
3926 6789 5.786121 ATCAGGGCATAATATACCTTGCT 57.214 39.130 0.00 0.00 35.46 3.91
3927 6790 7.282585 TCATATCAGGGCATAATATACCTTGC 58.717 38.462 0.00 0.00 31.01 4.01
3928 6791 9.113838 GTTCATATCAGGGCATAATATACCTTG 57.886 37.037 0.00 0.00 32.12 3.61
3929 6792 8.835734 TGTTCATATCAGGGCATAATATACCTT 58.164 33.333 0.00 0.00 0.00 3.50
3931 6794 8.267894 AGTGTTCATATCAGGGCATAATATACC 58.732 37.037 0.00 0.00 0.00 2.73
3940 6806 2.438021 GGGTAGTGTTCATATCAGGGCA 59.562 50.000 0.00 0.00 0.00 5.36
3960 7246 1.268386 CGCAGCAAGCATCACTAATGG 60.268 52.381 0.00 0.00 46.13 3.16
3988 7274 0.673022 CTCTCTGGGACAAGTGCAGC 60.673 60.000 0.00 0.00 38.70 5.25
3993 7279 0.178958 ACCGTCTCTCTGGGACAAGT 60.179 55.000 0.00 0.00 38.70 3.16
3997 7283 1.186267 ACCAACCGTCTCTCTGGGAC 61.186 60.000 0.00 0.00 32.94 4.46
3999 7285 1.185618 TCACCAACCGTCTCTCTGGG 61.186 60.000 0.00 0.00 32.94 4.45
4019 7305 5.447818 GGAGAAATTAACAATGAGCGACTGG 60.448 44.000 0.00 0.00 0.00 4.00
4025 7311 3.378427 AGCCGGAGAAATTAACAATGAGC 59.622 43.478 5.05 0.00 0.00 4.26
4081 7367 4.900635 AACTCTTTTCATGAGTGCGTTT 57.099 36.364 0.00 0.00 43.16 3.60
4085 7371 3.979495 CAGCAAACTCTTTTCATGAGTGC 59.021 43.478 0.00 0.00 43.16 4.40
4086 7372 5.210715 GTCAGCAAACTCTTTTCATGAGTG 58.789 41.667 0.00 0.00 43.16 3.51
4138 7424 5.464389 GCTGTTCATTGAAAATGCTTTCTGT 59.536 36.000 0.00 0.00 41.41 3.41
4180 7466 4.687948 CGCAGAATAACCACTAGATCATGG 59.312 45.833 0.00 8.67 42.13 3.66
4195 7489 1.164411 CAACACCTTGCCGCAGAATA 58.836 50.000 0.00 0.00 0.00 1.75
4202 7496 0.602638 TAGCAGACAACACCTTGCCG 60.603 55.000 0.00 0.00 0.00 5.69
4268 7562 9.066892 AGAACAAGTGTTTCAGCTAATAAATGA 57.933 29.630 0.00 0.00 38.56 2.57
4274 7568 6.699575 AACAGAACAAGTGTTTCAGCTAAT 57.300 33.333 0.00 0.00 38.56 1.73
4286 7580 4.152223 GCAAAACAGCAAAACAGAACAAGT 59.848 37.500 0.00 0.00 0.00 3.16
4287 7581 4.389687 AGCAAAACAGCAAAACAGAACAAG 59.610 37.500 0.00 0.00 36.85 3.16
4299 7596 2.485426 GCATCTAGACAGCAAAACAGCA 59.515 45.455 12.75 0.00 36.85 4.41
4301 7598 5.447010 GCTAAGCATCTAGACAGCAAAACAG 60.447 44.000 18.20 9.80 0.00 3.16
4362 7663 7.093814 ACAAAACAGATTAGCCTCATATTTGCA 60.094 33.333 0.00 0.00 0.00 4.08
4565 7869 1.538276 CGAATTCAGCAAACATCGCC 58.462 50.000 6.22 0.00 0.00 5.54
4614 7918 7.255139 GGTGATAAGAAATAAATTAGCTGGCGT 60.255 37.037 0.00 0.00 0.00 5.68
4656 7961 0.884259 CATGGTCGCACTTCCACACA 60.884 55.000 0.00 0.00 36.50 3.72
4710 8015 5.773575 AGCTATCAATACACTATGTGGACG 58.226 41.667 2.72 0.00 37.94 4.79
4715 8020 7.227512 GGAGCAAAAGCTATCAATACACTATGT 59.772 37.037 0.00 0.00 0.00 2.29
4765 8074 9.883142 TTTAAACAGTTCATTTCATCAAAGGTT 57.117 25.926 0.00 0.00 0.00 3.50
4771 8101 8.637099 TCCACATTTAAACAGTTCATTTCATCA 58.363 29.630 0.00 0.00 0.00 3.07
4774 8104 8.690884 TCTTCCACATTTAAACAGTTCATTTCA 58.309 29.630 0.00 0.00 0.00 2.69
4816 8146 4.962362 TGATTCAGACATAGCCTGAGGTTA 59.038 41.667 0.00 0.00 41.16 2.85
4851 8187 2.855370 CCAGCAAAACCGTTTGTACAAC 59.145 45.455 8.07 3.09 45.06 3.32
4904 8240 1.097547 GGGCGATAATGCAGCACACT 61.098 55.000 0.00 0.00 36.28 3.55
4920 8264 2.562738 ACAAGGAAATTAACAGCTGGGC 59.437 45.455 19.93 0.00 0.00 5.36
4978 8322 1.190643 ACTAGAGAAGCTGCCACCTC 58.809 55.000 0.00 0.59 0.00 3.85
4985 8329 4.569966 CCATAGTGCAAACTAGAGAAGCTG 59.430 45.833 0.00 0.00 0.00 4.24
5028 8372 6.675413 ACATAATGGATAAATGCTGCCAAT 57.325 33.333 0.00 0.00 33.51 3.16
5040 8384 8.428852 TCTTTGATCCTCGAAACATAATGGATA 58.571 33.333 0.00 0.00 34.82 2.59
5052 8396 6.892658 TTTTCCAATTCTTTGATCCTCGAA 57.107 33.333 0.00 0.00 34.60 3.71
5079 8423 7.283580 TCATCTCATTGCATACACATTCAATGA 59.716 33.333 3.79 13.61 46.07 2.57
5135 8480 0.676782 ATGAGGCGTGCTGGTTTACC 60.677 55.000 0.00 0.00 0.00 2.85
5144 8489 1.812922 CAGGACTGATGAGGCGTGC 60.813 63.158 0.00 0.00 36.33 5.34
5145 8490 0.738762 CACAGGACTGATGAGGCGTG 60.739 60.000 6.15 6.15 46.84 5.34
5148 8493 1.277557 AGAACACAGGACTGATGAGGC 59.722 52.381 6.29 0.00 0.00 4.70
5197 8542 0.111253 CTGGAACAAAGGAGGGCAGT 59.889 55.000 0.00 0.00 38.70 4.40
5207 8552 2.872245 CTCGAGAGCAAACTGGAACAAA 59.128 45.455 6.58 0.00 38.70 2.83
5208 8553 2.483876 CTCGAGAGCAAACTGGAACAA 58.516 47.619 6.58 0.00 38.70 2.83
5418 11689 2.574369 TGTCATGTAAATCCCCCTCGTT 59.426 45.455 0.00 0.00 0.00 3.85
5467 11738 5.585047 GCCTCGTCTGATGGTTTAATAAAGT 59.415 40.000 0.00 0.00 0.00 2.66
5519 11790 2.476619 GGCATGGATGTAATTCGTCTCG 59.523 50.000 0.00 0.00 33.00 4.04
5560 11832 2.332654 AATTCAAGCGGCACCGACC 61.333 57.895 14.43 0.00 42.83 4.79
5561 11833 1.154225 CAATTCAAGCGGCACCGAC 60.154 57.895 14.43 4.28 42.83 4.79
5659 11931 7.615582 TGCAGATTTCATAAGATTTCGACTT 57.384 32.000 0.00 0.00 0.00 3.01
5672 11944 3.758023 TGTCGGAATGTTGCAGATTTCAT 59.242 39.130 6.84 0.00 0.00 2.57
5711 11983 2.840651 AGAAACTGGTAGGAGATGTGGG 59.159 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.