Multiple sequence alignment - TraesCS7A01G057100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G057100 chr7A 100.000 3068 0 0 1 3068 27461062 27464129 0.000000e+00 5666.0
1 TraesCS7A01G057100 chr7A 96.667 90 3 0 2176 2265 510382232 510382143 1.910000e-32 150.0
2 TraesCS7A01G057100 chr7A 80.508 118 23 0 1837 1954 581137430 581137547 1.170000e-14 91.6
3 TraesCS7A01G057100 chr7A 100.000 37 0 0 2262 2298 27463192 27463228 5.490000e-08 69.4
4 TraesCS7A01G057100 chr7A 100.000 37 0 0 2131 2167 27463323 27463359 5.490000e-08 69.4
5 TraesCS7A01G057100 chrUn 97.094 1101 29 1 1067 2167 50428731 50429828 0.000000e+00 1853.0
6 TraesCS7A01G057100 chrUn 91.502 659 35 5 162 812 50295129 50294484 0.000000e+00 887.0
7 TraesCS7A01G057100 chrUn 93.561 264 14 3 2797 3059 263185003 263184742 1.030000e-104 390.0
8 TraesCS7A01G057100 chrUn 93.182 264 15 3 2797 3059 50438628 50438889 4.800000e-103 385.0
9 TraesCS7A01G057100 chrUn 94.690 226 12 0 844 1069 50294163 50293938 4.870000e-93 351.0
10 TraesCS7A01G057100 chrUn 96.552 203 7 0 2262 2464 50429792 50429994 1.360000e-88 337.0
11 TraesCS7A01G057100 chrUn 88.426 216 11 3 2501 2716 50438339 50438540 6.570000e-62 248.0
12 TraesCS7A01G057100 chrUn 88.426 216 11 3 2501 2716 263185292 263185091 6.570000e-62 248.0
13 TraesCS7A01G057100 chrUn 95.270 148 6 1 30 176 480113078 480112931 1.840000e-57 233.0
14 TraesCS7A01G057100 chrUn 100.000 39 0 0 2462 2500 50437423 50437461 4.240000e-09 73.1
15 TraesCS7A01G057100 chrUn 100.000 39 0 0 2462 2500 263186208 263186170 4.240000e-09 73.1
16 TraesCS7A01G057100 chrUn 100.000 39 0 0 2462 2500 345495456 345495494 4.240000e-09 73.1
17 TraesCS7A01G057100 chr4A 97.094 1101 29 1 1067 2167 703441572 703442669 0.000000e+00 1853.0
18 TraesCS7A01G057100 chr4A 96.552 203 7 0 2262 2464 703442633 703442835 1.360000e-88 337.0
19 TraesCS7A01G057100 chr4A 93.814 97 4 2 2179 2275 541364328 541364234 8.870000e-31 145.0
20 TraesCS7A01G057100 chr4A 100.000 39 0 0 2462 2500 703450262 703450300 4.240000e-09 73.1
21 TraesCS7A01G057100 chr7B 75.477 1048 198 42 990 2011 639379695 639378681 1.000000e-124 457.0
22 TraesCS7A01G057100 chr7B 80.352 341 56 9 1375 1708 639395561 639395897 6.570000e-62 248.0
23 TraesCS7A01G057100 chr7B 76.074 163 31 7 1556 1714 623757375 623757533 9.120000e-11 78.7
24 TraesCS7A01G057100 chr7B 88.333 60 5 2 1853 1911 640864828 640864770 1.530000e-08 71.3
25 TraesCS7A01G057100 chr7D 79.598 647 112 15 1375 2011 576747576 576748212 2.170000e-121 446.0
26 TraesCS7A01G057100 chr7D 96.629 89 3 0 2176 2264 634072863 634072951 6.850000e-32 148.0
27 TraesCS7A01G057100 chr7D 85.333 75 11 0 1837 1911 510339916 510339990 9.120000e-11 78.7
28 TraesCS7A01G057100 chr7D 86.667 60 6 2 1853 1911 577510891 577510833 7.100000e-07 65.8
29 TraesCS7A01G057100 chr7D 86.667 60 6 2 1853 1911 577537552 577537494 7.100000e-07 65.8
30 TraesCS7A01G057100 chr6B 96.629 89 3 0 2176 2264 438623367 438623455 6.850000e-32 148.0
31 TraesCS7A01G057100 chr3A 95.604 91 4 0 2180 2270 10694081 10694171 2.470000e-31 147.0
32 TraesCS7A01G057100 chr5A 96.552 87 2 1 2179 2265 115018721 115018636 3.190000e-30 143.0
33 TraesCS7A01G057100 chr1D 96.512 86 3 0 2179 2264 47497174 47497089 3.190000e-30 143.0
34 TraesCS7A01G057100 chr2B 93.684 95 5 1 2179 2273 594838135 594838042 1.150000e-29 141.0
35 TraesCS7A01G057100 chr1A 94.382 89 5 0 2176 2264 25815842 25815930 1.480000e-28 137.0
36 TraesCS7A01G057100 chr3D 100.000 29 0 0 27 55 333003798 333003770 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G057100 chr7A 27461062 27464129 3067 False 1934.933333 5666 100.000000 1 3068 3 chr7A.!!$F2 3067
1 TraesCS7A01G057100 chrUn 50428731 50429994 1263 False 1095.000000 1853 96.823000 1067 2464 2 chrUn.!!$F2 1397
2 TraesCS7A01G057100 chrUn 50293938 50295129 1191 True 619.000000 887 93.096000 162 1069 2 chrUn.!!$R2 907
3 TraesCS7A01G057100 chrUn 263184742 263186208 1466 True 237.033333 390 93.995667 2462 3059 3 chrUn.!!$R3 597
4 TraesCS7A01G057100 chrUn 50437423 50438889 1466 False 235.366667 385 93.869333 2462 3059 3 chrUn.!!$F3 597
5 TraesCS7A01G057100 chr4A 703441572 703442835 1263 False 1095.000000 1853 96.823000 1067 2464 2 chr4A.!!$F2 1397
6 TraesCS7A01G057100 chr7B 639378681 639379695 1014 True 457.000000 457 75.477000 990 2011 1 chr7B.!!$R1 1021
7 TraesCS7A01G057100 chr7D 576747576 576748212 636 False 446.000000 446 79.598000 1375 2011 1 chr7D.!!$F2 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 619 0.031721 CCCGGCGGTCTAGATTGTAC 59.968 60.0 26.32 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2560 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.978343 TCGACAAAACTCTAACATTATGGG 57.022 37.500 0.00 0.00 0.00 4.00
33 34 6.469410 TCGACAAAACTCTAACATTATGGGT 58.531 36.000 0.00 0.00 0.00 4.51
34 35 6.592607 TCGACAAAACTCTAACATTATGGGTC 59.407 38.462 0.00 0.00 0.00 4.46
35 36 6.370442 CGACAAAACTCTAACATTATGGGTCA 59.630 38.462 0.00 0.00 0.00 4.02
36 37 7.094975 CGACAAAACTCTAACATTATGGGTCAA 60.095 37.037 0.00 0.00 0.00 3.18
37 38 7.882179 ACAAAACTCTAACATTATGGGTCAAC 58.118 34.615 0.00 0.00 0.00 3.18
38 39 7.504238 ACAAAACTCTAACATTATGGGTCAACA 59.496 33.333 0.00 0.00 0.00 3.33
39 40 8.522830 CAAAACTCTAACATTATGGGTCAACAT 58.477 33.333 0.00 0.00 34.90 2.71
40 41 8.650143 AAACTCTAACATTATGGGTCAACATT 57.350 30.769 0.00 0.00 32.39 2.71
41 42 7.630242 ACTCTAACATTATGGGTCAACATTG 57.370 36.000 0.00 0.00 32.39 2.82
42 43 7.402054 ACTCTAACATTATGGGTCAACATTGA 58.598 34.615 0.00 0.00 34.20 2.57
43 44 7.888021 ACTCTAACATTATGGGTCAACATTGAA 59.112 33.333 0.00 0.00 39.21 2.69
44 45 8.279970 TCTAACATTATGGGTCAACATTGAAG 57.720 34.615 0.00 0.00 39.21 3.02
45 46 8.106462 TCTAACATTATGGGTCAACATTGAAGA 58.894 33.333 0.00 0.00 39.21 2.87
46 47 7.722949 AACATTATGGGTCAACATTGAAGAT 57.277 32.000 0.00 0.00 39.21 2.40
47 48 7.104043 ACATTATGGGTCAACATTGAAGATG 57.896 36.000 0.00 0.00 39.21 2.90
48 49 5.581126 TTATGGGTCAACATTGAAGATGC 57.419 39.130 0.00 0.00 39.21 3.91
49 50 2.170166 TGGGTCAACATTGAAGATGCC 58.830 47.619 0.00 0.00 39.21 4.40
50 51 1.478105 GGGTCAACATTGAAGATGCCC 59.522 52.381 0.00 0.00 39.21 5.36
51 52 2.450476 GGTCAACATTGAAGATGCCCT 58.550 47.619 0.00 0.00 39.21 5.19
52 53 2.827921 GGTCAACATTGAAGATGCCCTT 59.172 45.455 0.00 0.00 39.21 3.95
53 54 4.016444 GGTCAACATTGAAGATGCCCTTA 58.984 43.478 0.00 0.00 39.21 2.69
54 55 4.462483 GGTCAACATTGAAGATGCCCTTAA 59.538 41.667 0.00 0.00 39.21 1.85
55 56 5.127682 GGTCAACATTGAAGATGCCCTTAAT 59.872 40.000 0.00 0.00 39.21 1.40
56 57 6.351286 GGTCAACATTGAAGATGCCCTTAATT 60.351 38.462 0.00 0.00 39.21 1.40
57 58 7.099120 GTCAACATTGAAGATGCCCTTAATTT 58.901 34.615 0.00 0.00 39.21 1.82
58 59 7.063780 GTCAACATTGAAGATGCCCTTAATTTG 59.936 37.037 0.00 0.00 39.21 2.32
59 60 5.981174 ACATTGAAGATGCCCTTAATTTGG 58.019 37.500 0.00 0.00 34.68 3.28
61 62 4.059773 TGAAGATGCCCTTAATTTGGGT 57.940 40.909 15.05 0.09 46.22 4.51
62 63 5.199982 TGAAGATGCCCTTAATTTGGGTA 57.800 39.130 15.05 12.08 46.22 3.69
63 64 5.200483 TGAAGATGCCCTTAATTTGGGTAG 58.800 41.667 15.05 0.00 46.22 3.18
64 65 5.044476 TGAAGATGCCCTTAATTTGGGTAGA 60.044 40.000 15.05 3.74 46.22 2.59
65 66 4.793201 AGATGCCCTTAATTTGGGTAGAC 58.207 43.478 15.05 10.24 46.22 2.59
66 67 4.229582 AGATGCCCTTAATTTGGGTAGACA 59.770 41.667 15.05 7.17 46.22 3.41
67 68 4.390129 TGCCCTTAATTTGGGTAGACAA 57.610 40.909 15.05 0.00 46.22 3.18
68 69 4.340617 TGCCCTTAATTTGGGTAGACAAG 58.659 43.478 15.05 0.00 46.22 3.16
69 70 4.043561 TGCCCTTAATTTGGGTAGACAAGA 59.956 41.667 15.05 0.00 46.22 3.02
70 71 4.398358 GCCCTTAATTTGGGTAGACAAGAC 59.602 45.833 15.05 0.00 46.22 3.01
71 72 5.566469 CCCTTAATTTGGGTAGACAAGACA 58.434 41.667 7.77 0.00 39.82 3.41
72 73 6.187682 CCCTTAATTTGGGTAGACAAGACAT 58.812 40.000 7.77 0.00 39.82 3.06
73 74 6.663523 CCCTTAATTTGGGTAGACAAGACATT 59.336 38.462 7.77 0.00 39.82 2.71
74 75 7.832187 CCCTTAATTTGGGTAGACAAGACATTA 59.168 37.037 7.77 0.00 39.82 1.90
75 76 9.238368 CCTTAATTTGGGTAGACAAGACATTAA 57.762 33.333 0.00 0.00 0.00 1.40
78 79 6.569179 TTTGGGTAGACAAGACATTAAAGC 57.431 37.500 0.00 0.00 0.00 3.51
79 80 5.499004 TGGGTAGACAAGACATTAAAGCT 57.501 39.130 0.00 0.00 0.00 3.74
80 81 5.245531 TGGGTAGACAAGACATTAAAGCTG 58.754 41.667 0.00 0.00 0.00 4.24
81 82 4.636206 GGGTAGACAAGACATTAAAGCTGG 59.364 45.833 0.00 0.00 0.00 4.85
82 83 5.246307 GGTAGACAAGACATTAAAGCTGGT 58.754 41.667 0.00 0.00 0.00 4.00
83 84 5.705905 GGTAGACAAGACATTAAAGCTGGTT 59.294 40.000 0.00 0.00 0.00 3.67
84 85 6.877322 GGTAGACAAGACATTAAAGCTGGTTA 59.123 38.462 0.00 0.00 0.00 2.85
85 86 7.064728 GGTAGACAAGACATTAAAGCTGGTTAG 59.935 40.741 0.00 0.00 0.00 2.34
86 87 6.534634 AGACAAGACATTAAAGCTGGTTAGT 58.465 36.000 0.00 0.00 0.00 2.24
87 88 7.676947 AGACAAGACATTAAAGCTGGTTAGTA 58.323 34.615 0.00 0.00 0.00 1.82
88 89 7.603024 AGACAAGACATTAAAGCTGGTTAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
89 90 7.450903 ACAAGACATTAAAGCTGGTTAGTACT 58.549 34.615 0.00 0.00 0.00 2.73
90 91 8.591072 ACAAGACATTAAAGCTGGTTAGTACTA 58.409 33.333 0.00 0.00 0.00 1.82
91 92 9.601217 CAAGACATTAAAGCTGGTTAGTACTAT 57.399 33.333 2.79 0.00 0.00 2.12
92 93 9.601217 AAGACATTAAAGCTGGTTAGTACTATG 57.399 33.333 2.79 0.00 0.00 2.23
93 94 8.978472 AGACATTAAAGCTGGTTAGTACTATGA 58.022 33.333 2.79 0.00 0.00 2.15
94 95 9.765795 GACATTAAAGCTGGTTAGTACTATGAT 57.234 33.333 2.79 0.00 0.00 2.45
99 100 8.723942 AAAGCTGGTTAGTACTATGATTGAAG 57.276 34.615 2.79 0.00 0.00 3.02
100 101 6.284459 AGCTGGTTAGTACTATGATTGAAGC 58.716 40.000 2.79 6.75 0.00 3.86
101 102 6.098982 AGCTGGTTAGTACTATGATTGAAGCT 59.901 38.462 2.79 8.69 0.00 3.74
102 103 7.287927 AGCTGGTTAGTACTATGATTGAAGCTA 59.712 37.037 2.79 0.00 33.28 3.32
103 104 7.596995 GCTGGTTAGTACTATGATTGAAGCTAG 59.403 40.741 2.79 1.31 0.00 3.42
104 105 7.434492 TGGTTAGTACTATGATTGAAGCTAGC 58.566 38.462 6.62 6.62 0.00 3.42
105 106 6.583050 GGTTAGTACTATGATTGAAGCTAGCG 59.417 42.308 9.55 0.00 0.00 4.26
106 107 5.776173 AGTACTATGATTGAAGCTAGCGT 57.224 39.130 9.55 5.81 0.00 5.07
107 108 6.879276 AGTACTATGATTGAAGCTAGCGTA 57.121 37.500 9.55 0.00 0.00 4.42
108 109 7.455641 AGTACTATGATTGAAGCTAGCGTAT 57.544 36.000 9.55 0.00 0.00 3.06
109 110 7.309177 AGTACTATGATTGAAGCTAGCGTATG 58.691 38.462 9.55 0.00 0.00 2.39
110 111 6.090483 ACTATGATTGAAGCTAGCGTATGT 57.910 37.500 9.55 0.00 0.00 2.29
111 112 6.516718 ACTATGATTGAAGCTAGCGTATGTT 58.483 36.000 9.55 0.00 0.00 2.71
112 113 6.986817 ACTATGATTGAAGCTAGCGTATGTTT 59.013 34.615 9.55 0.00 0.00 2.83
113 114 5.469373 TGATTGAAGCTAGCGTATGTTTG 57.531 39.130 9.55 0.00 0.00 2.93
114 115 5.175127 TGATTGAAGCTAGCGTATGTTTGA 58.825 37.500 9.55 0.00 0.00 2.69
115 116 5.641636 TGATTGAAGCTAGCGTATGTTTGAA 59.358 36.000 9.55 0.00 0.00 2.69
116 117 5.530519 TTGAAGCTAGCGTATGTTTGAAG 57.469 39.130 9.55 0.00 0.00 3.02
117 118 3.370978 TGAAGCTAGCGTATGTTTGAAGC 59.629 43.478 9.55 0.00 0.00 3.86
118 119 3.252974 AGCTAGCGTATGTTTGAAGCT 57.747 42.857 9.55 0.00 41.45 3.74
119 120 4.386867 AGCTAGCGTATGTTTGAAGCTA 57.613 40.909 9.55 0.00 37.08 3.32
121 122 4.700596 CTAGCGTATGTTTGAAGCTAGC 57.299 45.455 6.62 6.62 46.84 3.42
122 123 1.927174 AGCGTATGTTTGAAGCTAGCG 59.073 47.619 9.55 0.00 36.28 4.26
123 124 1.592350 GCGTATGTTTGAAGCTAGCGC 60.592 52.381 9.55 0.00 35.77 5.92
124 125 1.331161 CGTATGTTTGAAGCTAGCGCG 60.331 52.381 9.55 0.00 42.32 6.86
125 126 1.659098 GTATGTTTGAAGCTAGCGCGT 59.341 47.619 9.55 0.00 42.32 6.01
126 127 0.443869 ATGTTTGAAGCTAGCGCGTG 59.556 50.000 9.55 0.00 42.32 5.34
127 128 0.598942 TGTTTGAAGCTAGCGCGTGA 60.599 50.000 9.55 0.00 42.32 4.35
128 129 0.093705 GTTTGAAGCTAGCGCGTGAG 59.906 55.000 9.55 6.50 42.32 3.51
129 130 0.319555 TTTGAAGCTAGCGCGTGAGT 60.320 50.000 9.55 0.00 42.32 3.41
130 131 0.319555 TTGAAGCTAGCGCGTGAGTT 60.320 50.000 9.55 0.00 42.32 3.01
131 132 0.319555 TGAAGCTAGCGCGTGAGTTT 60.320 50.000 9.55 9.61 42.32 2.66
132 133 1.068125 TGAAGCTAGCGCGTGAGTTTA 60.068 47.619 9.55 0.00 42.32 2.01
133 134 1.990563 GAAGCTAGCGCGTGAGTTTAA 59.009 47.619 9.55 0.00 42.32 1.52
134 135 2.295253 AGCTAGCGCGTGAGTTTAAT 57.705 45.000 9.55 0.00 42.32 1.40
135 136 2.618053 AGCTAGCGCGTGAGTTTAATT 58.382 42.857 9.55 0.00 42.32 1.40
136 137 2.348666 AGCTAGCGCGTGAGTTTAATTG 59.651 45.455 9.55 0.00 42.32 2.32
137 138 2.093783 GCTAGCGCGTGAGTTTAATTGT 59.906 45.455 8.43 0.00 0.00 2.71
138 139 2.594529 AGCGCGTGAGTTTAATTGTG 57.405 45.000 8.43 0.00 0.00 3.33
139 140 2.139917 AGCGCGTGAGTTTAATTGTGA 58.860 42.857 8.43 0.00 0.00 3.58
140 141 2.546368 AGCGCGTGAGTTTAATTGTGAA 59.454 40.909 8.43 0.00 0.00 3.18
141 142 2.650297 GCGCGTGAGTTTAATTGTGAAC 59.350 45.455 8.43 0.00 0.00 3.18
142 143 3.846744 GCGCGTGAGTTTAATTGTGAACA 60.847 43.478 8.43 0.00 0.00 3.18
143 144 3.900116 CGCGTGAGTTTAATTGTGAACAG 59.100 43.478 0.00 0.00 0.00 3.16
144 145 4.219033 GCGTGAGTTTAATTGTGAACAGG 58.781 43.478 0.00 0.00 0.00 4.00
145 146 4.024387 GCGTGAGTTTAATTGTGAACAGGA 60.024 41.667 0.00 0.00 0.00 3.86
146 147 5.679906 CGTGAGTTTAATTGTGAACAGGAG 58.320 41.667 0.00 0.00 0.00 3.69
147 148 5.465390 CGTGAGTTTAATTGTGAACAGGAGA 59.535 40.000 0.00 0.00 0.00 3.71
148 149 6.564125 CGTGAGTTTAATTGTGAACAGGAGAC 60.564 42.308 0.00 0.00 0.00 3.36
149 150 5.465390 TGAGTTTAATTGTGAACAGGAGACG 59.535 40.000 0.00 0.00 0.00 4.18
150 151 5.365619 AGTTTAATTGTGAACAGGAGACGT 58.634 37.500 0.00 0.00 0.00 4.34
151 152 5.465724 AGTTTAATTGTGAACAGGAGACGTC 59.534 40.000 7.70 7.70 0.00 4.34
152 153 2.457366 ATTGTGAACAGGAGACGTCC 57.543 50.000 13.01 3.55 44.33 4.79
211 212 2.357517 CGGTTTCCTCACGCTGCT 60.358 61.111 0.00 0.00 0.00 4.24
217 218 2.492449 TTCCTCACGCTGCTCTTCCG 62.492 60.000 0.00 0.00 0.00 4.30
249 250 5.186996 ACGAAAACTCGGTAAACACTCTA 57.813 39.130 0.00 0.00 37.45 2.43
336 337 1.320344 ATCTCACGCTAGGAACGCCA 61.320 55.000 0.00 0.00 36.29 5.69
339 340 1.805945 CACGCTAGGAACGCCACTC 60.806 63.158 0.00 0.00 36.29 3.51
343 344 0.530870 GCTAGGAACGCCACTCATCC 60.531 60.000 0.00 0.00 36.29 3.51
344 345 0.249073 CTAGGAACGCCACTCATCCG 60.249 60.000 0.00 0.00 37.05 4.18
427 428 4.963318 TTTCATATTGATCCGCCTCTCT 57.037 40.909 0.00 0.00 0.00 3.10
533 534 1.081175 GTGCTTCGCTTCCTTTGGC 60.081 57.895 0.00 0.00 0.00 4.52
610 619 0.031721 CCCGGCGGTCTAGATTGTAC 59.968 60.000 26.32 0.00 0.00 2.90
611 620 1.030457 CCGGCGGTCTAGATTGTACT 58.970 55.000 19.97 0.00 0.00 2.73
612 621 2.224606 CCGGCGGTCTAGATTGTACTA 58.775 52.381 19.97 0.00 0.00 1.82
663 672 6.594788 ATGATGGTGCTTAAATTTGTCACT 57.405 33.333 0.00 0.00 0.00 3.41
664 673 5.771469 TGATGGTGCTTAAATTTGTCACTG 58.229 37.500 0.00 0.00 0.00 3.66
665 674 5.534278 TGATGGTGCTTAAATTTGTCACTGA 59.466 36.000 0.00 0.00 0.00 3.41
667 676 5.771469 TGGTGCTTAAATTTGTCACTGATG 58.229 37.500 0.00 0.00 0.00 3.07
668 677 5.301551 TGGTGCTTAAATTTGTCACTGATGT 59.698 36.000 0.00 0.00 0.00 3.06
669 678 6.183360 TGGTGCTTAAATTTGTCACTGATGTT 60.183 34.615 0.00 0.00 0.00 2.71
670 679 6.701400 GGTGCTTAAATTTGTCACTGATGTTT 59.299 34.615 0.00 0.00 0.00 2.83
671 680 7.306749 GGTGCTTAAATTTGTCACTGATGTTTG 60.307 37.037 0.00 0.00 0.00 2.93
672 681 6.200665 TGCTTAAATTTGTCACTGATGTTTGC 59.799 34.615 0.00 0.00 0.00 3.68
673 682 6.421801 GCTTAAATTTGTCACTGATGTTTGCT 59.578 34.615 0.00 0.00 0.00 3.91
674 683 7.042523 GCTTAAATTTGTCACTGATGTTTGCTT 60.043 33.333 0.00 0.00 0.00 3.91
675 684 8.715191 TTAAATTTGTCACTGATGTTTGCTTT 57.285 26.923 0.00 0.00 0.00 3.51
676 685 7.614124 AAATTTGTCACTGATGTTTGCTTTT 57.386 28.000 0.00 0.00 0.00 2.27
677 686 8.715191 AAATTTGTCACTGATGTTTGCTTTTA 57.285 26.923 0.00 0.00 0.00 1.52
703 712 6.415573 AGTGTTTAAACTTGAAAAATACGCCG 59.584 34.615 18.72 0.00 31.78 6.46
712 721 5.927954 TGAAAAATACGCCGAACTAGTTT 57.072 34.783 10.02 0.00 0.00 2.66
730 739 4.737054 AGTTTTAGAATTTGGCATGAGCG 58.263 39.130 0.00 0.00 43.41 5.03
739 748 0.451383 TGGCATGAGCGTGCAATTAC 59.549 50.000 15.72 0.00 46.81 1.89
771 780 5.001874 TCTCATCCGTAGACGTATAATGCT 58.998 41.667 0.85 0.00 37.74 3.79
784 793 2.785540 TAATGCTCTGATGTGGCACA 57.214 45.000 24.36 24.36 38.83 4.57
792 801 0.036105 TGATGTGGCACAGTGGCTAG 60.036 55.000 26.04 0.00 44.10 3.42
812 821 0.796927 GGCAGCCTGTTTTCTACGTC 59.203 55.000 3.29 0.00 0.00 4.34
813 822 1.608283 GGCAGCCTGTTTTCTACGTCT 60.608 52.381 3.29 0.00 0.00 4.18
814 823 2.353406 GGCAGCCTGTTTTCTACGTCTA 60.353 50.000 3.29 0.00 0.00 2.59
815 824 2.666994 GCAGCCTGTTTTCTACGTCTAC 59.333 50.000 0.00 0.00 0.00 2.59
816 825 2.915463 CAGCCTGTTTTCTACGTCTACG 59.085 50.000 0.00 0.04 46.33 3.51
817 826 2.094854 AGCCTGTTTTCTACGTCTACGG 60.095 50.000 7.50 0.00 44.95 4.02
818 827 2.095059 GCCTGTTTTCTACGTCTACGGA 60.095 50.000 7.50 0.00 44.95 4.69
820 829 4.103357 CCTGTTTTCTACGTCTACGGATG 58.897 47.826 7.50 0.00 44.95 3.51
821 830 4.100707 TGTTTTCTACGTCTACGGATGG 57.899 45.455 7.50 0.00 44.95 3.51
823 832 4.400251 TGTTTTCTACGTCTACGGATGGAT 59.600 41.667 7.50 0.00 44.95 3.41
824 833 5.105635 TGTTTTCTACGTCTACGGATGGATT 60.106 40.000 7.50 0.00 44.95 3.01
826 835 6.889301 TTTCTACGTCTACGGATGGATTAT 57.111 37.500 7.50 0.00 44.95 1.28
827 836 6.889301 TTCTACGTCTACGGATGGATTATT 57.111 37.500 7.50 0.00 44.95 1.40
828 837 7.984422 TTCTACGTCTACGGATGGATTATTA 57.016 36.000 7.50 0.00 44.95 0.98
829 838 7.369803 TCTACGTCTACGGATGGATTATTAC 57.630 40.000 7.50 0.00 44.95 1.89
838 847 5.864986 CGGATGGATTATTACCGTATTTGC 58.135 41.667 0.00 0.00 38.97 3.68
839 848 5.410132 CGGATGGATTATTACCGTATTTGCA 59.590 40.000 0.00 0.00 38.97 4.08
840 849 6.608610 GGATGGATTATTACCGTATTTGCAC 58.391 40.000 0.00 0.00 0.00 4.57
841 850 5.660629 TGGATTATTACCGTATTTGCACG 57.339 39.130 0.00 0.00 41.59 5.34
842 851 4.024725 TGGATTATTACCGTATTTGCACGC 60.025 41.667 0.00 0.00 40.59 5.34
850 1148 2.596575 CCGTATTTGCACGCTCGTTATG 60.597 50.000 0.00 0.00 40.59 1.90
860 1158 1.199097 CGCTCGTTATGGCTTTTGGTT 59.801 47.619 0.00 0.00 0.00 3.67
864 1162 2.227865 TCGTTATGGCTTTTGGTTGAGC 59.772 45.455 0.00 0.00 38.17 4.26
869 1167 2.255252 CTTTTGGTTGAGCCGCCG 59.745 61.111 0.00 0.00 41.21 6.46
888 1186 1.508632 GCTAAATCGCATAGCCCGAA 58.491 50.000 3.45 0.00 39.87 4.30
954 1252 0.526524 CCCAACGCAGAAACGCAAAA 60.527 50.000 0.00 0.00 36.19 2.44
974 1272 0.761187 AAGGACTTCAGCTGTGAGCA 59.239 50.000 14.67 0.00 45.56 4.26
1008 1306 0.462789 CAGCCTTGGCCATGGAAATC 59.537 55.000 35.67 20.29 0.00 2.17
1018 1316 0.099968 CATGGAAATCGCCTGCACAG 59.900 55.000 0.00 0.00 0.00 3.66
1044 1342 1.741401 CCATGTCTTGCGCTCGGAA 60.741 57.895 9.73 0.00 0.00 4.30
1101 1399 3.978193 ATGCCGGGCAGGGACAAA 61.978 61.111 27.62 0.11 45.60 2.83
1267 1568 2.561037 GGTTGCTTGGTTGACCCGG 61.561 63.158 0.00 0.00 35.15 5.73
1290 1591 1.630148 GAGTTCGTGAACCATCCGAG 58.370 55.000 9.03 0.00 42.06 4.63
1301 1602 3.433306 ACCATCCGAGGAAATTTGTCA 57.567 42.857 0.00 0.00 0.00 3.58
1365 1666 3.077359 GCTTCTCATGCCATGGTATACC 58.923 50.000 15.61 15.50 0.00 2.73
1590 1903 2.182825 CACAAGTACATACTCGCGGTC 58.817 52.381 6.13 0.00 34.99 4.79
1739 2052 2.233676 TGCTAGAATTCGAACAGCAGGA 59.766 45.455 16.94 5.46 37.32 3.86
1787 2106 1.375396 TGCCAGAATCCGGACAACG 60.375 57.895 6.12 0.00 43.80 4.10
1936 2255 1.560860 GGACACAGCAGCGACAACTC 61.561 60.000 0.00 0.00 0.00 3.01
2011 2330 7.327214 TGATTTCATTACCAAAACTTATGCCC 58.673 34.615 0.00 0.00 0.00 5.36
2015 2334 2.296073 ACCAAAACTTATGCCCGGAA 57.704 45.000 0.73 0.00 0.00 4.30
2103 2422 1.001887 GTGGGATAACAACGGGGCA 60.002 57.895 0.00 0.00 0.00 5.36
2105 2424 1.134037 GTGGGATAACAACGGGGCATA 60.134 52.381 0.00 0.00 0.00 3.14
2106 2425 1.777878 TGGGATAACAACGGGGCATAT 59.222 47.619 0.00 0.00 0.00 1.78
2136 2455 9.958180 TTATGGTCCATGGTATTATTGTATCTG 57.042 33.333 15.10 0.00 0.00 2.90
2137 2456 7.387265 TGGTCCATGGTATTATTGTATCTGT 57.613 36.000 12.58 0.00 0.00 3.41
2138 2457 7.811282 TGGTCCATGGTATTATTGTATCTGTT 58.189 34.615 12.58 0.00 0.00 3.16
2139 2458 8.278639 TGGTCCATGGTATTATTGTATCTGTTT 58.721 33.333 12.58 0.00 0.00 2.83
2140 2459 8.567948 GGTCCATGGTATTATTGTATCTGTTTG 58.432 37.037 12.58 0.00 0.00 2.93
2141 2460 9.337396 GTCCATGGTATTATTGTATCTGTTTGA 57.663 33.333 12.58 0.00 0.00 2.69
2142 2461 9.559732 TCCATGGTATTATTGTATCTGTTTGAG 57.440 33.333 12.58 0.00 0.00 3.02
2143 2462 8.292448 CCATGGTATTATTGTATCTGTTTGAGC 58.708 37.037 2.57 0.00 0.00 4.26
2144 2463 9.060347 CATGGTATTATTGTATCTGTTTGAGCT 57.940 33.333 0.00 0.00 0.00 4.09
2145 2464 9.632638 ATGGTATTATTGTATCTGTTTGAGCTT 57.367 29.630 0.00 0.00 0.00 3.74
2146 2465 8.892723 TGGTATTATTGTATCTGTTTGAGCTTG 58.107 33.333 0.00 0.00 0.00 4.01
2147 2466 7.857885 GGTATTATTGTATCTGTTTGAGCTTGC 59.142 37.037 0.00 0.00 0.00 4.01
2148 2467 4.708726 ATTGTATCTGTTTGAGCTTGCC 57.291 40.909 0.00 0.00 0.00 4.52
2149 2468 2.076100 TGTATCTGTTTGAGCTTGCCG 58.924 47.619 0.00 0.00 0.00 5.69
2150 2469 1.398390 GTATCTGTTTGAGCTTGCCGG 59.602 52.381 0.00 0.00 0.00 6.13
2151 2470 0.962356 ATCTGTTTGAGCTTGCCGGG 60.962 55.000 2.18 0.00 0.00 5.73
2152 2471 3.273080 CTGTTTGAGCTTGCCGGGC 62.273 63.158 13.32 13.32 0.00 6.13
2153 2472 3.294493 GTTTGAGCTTGCCGGGCA 61.294 61.111 19.77 19.77 36.47 5.36
2154 2473 2.283101 TTTGAGCTTGCCGGGCAT 60.283 55.556 24.49 8.15 38.76 4.40
2155 2474 2.638354 TTTGAGCTTGCCGGGCATG 61.638 57.895 24.49 25.28 38.76 4.06
2160 2479 3.376078 CTTGCCGGGCATGCTTGT 61.376 61.111 24.49 0.00 38.76 3.16
2161 2480 3.346631 CTTGCCGGGCATGCTTGTC 62.347 63.158 24.49 5.67 38.76 3.18
2162 2481 3.866379 TTGCCGGGCATGCTTGTCT 62.866 57.895 24.49 0.00 38.76 3.41
2163 2482 2.124736 GCCGGGCATGCTTGTCTA 60.125 61.111 18.92 0.00 0.00 2.59
2164 2483 2.472909 GCCGGGCATGCTTGTCTAC 61.473 63.158 18.92 0.00 0.00 2.59
2165 2484 1.221840 CCGGGCATGCTTGTCTACT 59.778 57.895 18.92 0.00 0.00 2.57
2166 2485 0.464036 CCGGGCATGCTTGTCTACTA 59.536 55.000 18.92 0.00 0.00 1.82
2167 2486 1.070758 CCGGGCATGCTTGTCTACTAT 59.929 52.381 18.92 0.00 0.00 2.12
2168 2487 2.138320 CGGGCATGCTTGTCTACTATG 58.862 52.381 18.92 0.00 0.00 2.23
2169 2488 2.483714 CGGGCATGCTTGTCTACTATGT 60.484 50.000 18.92 0.00 0.00 2.29
2170 2489 2.874701 GGGCATGCTTGTCTACTATGTG 59.125 50.000 18.92 0.00 0.00 3.21
2171 2490 2.289002 GGCATGCTTGTCTACTATGTGC 59.711 50.000 18.92 0.00 0.00 4.57
2172 2491 3.201290 GCATGCTTGTCTACTATGTGCT 58.799 45.455 11.37 0.00 0.00 4.40
2173 2492 3.002042 GCATGCTTGTCTACTATGTGCTG 59.998 47.826 11.37 0.00 0.00 4.41
2174 2493 4.436332 CATGCTTGTCTACTATGTGCTGA 58.564 43.478 0.00 0.00 0.00 4.26
2175 2494 4.743057 TGCTTGTCTACTATGTGCTGAT 57.257 40.909 0.00 0.00 0.00 2.90
2176 2495 5.852282 TGCTTGTCTACTATGTGCTGATA 57.148 39.130 0.00 0.00 0.00 2.15
2177 2496 6.220726 TGCTTGTCTACTATGTGCTGATAA 57.779 37.500 0.00 0.00 0.00 1.75
2178 2497 6.639563 TGCTTGTCTACTATGTGCTGATAAA 58.360 36.000 0.00 0.00 0.00 1.40
2179 2498 7.102993 TGCTTGTCTACTATGTGCTGATAAAA 58.897 34.615 0.00 0.00 0.00 1.52
2180 2499 7.606073 TGCTTGTCTACTATGTGCTGATAAAAA 59.394 33.333 0.00 0.00 0.00 1.94
2181 2500 8.616076 GCTTGTCTACTATGTGCTGATAAAAAT 58.384 33.333 0.00 0.00 0.00 1.82
2182 2501 9.926751 CTTGTCTACTATGTGCTGATAAAAATG 57.073 33.333 0.00 0.00 0.00 2.32
2183 2502 8.437360 TGTCTACTATGTGCTGATAAAAATGG 57.563 34.615 0.00 0.00 0.00 3.16
2184 2503 8.046708 TGTCTACTATGTGCTGATAAAAATGGT 58.953 33.333 0.00 0.00 0.00 3.55
2185 2504 8.893727 GTCTACTATGTGCTGATAAAAATGGTT 58.106 33.333 0.00 0.00 0.00 3.67
2186 2505 8.892723 TCTACTATGTGCTGATAAAAATGGTTG 58.107 33.333 0.00 0.00 0.00 3.77
2187 2506 7.466746 ACTATGTGCTGATAAAAATGGTTGT 57.533 32.000 0.00 0.00 0.00 3.32
2188 2507 8.574251 ACTATGTGCTGATAAAAATGGTTGTA 57.426 30.769 0.00 0.00 0.00 2.41
2189 2508 9.189156 ACTATGTGCTGATAAAAATGGTTGTAT 57.811 29.630 0.00 0.00 0.00 2.29
2190 2509 9.669353 CTATGTGCTGATAAAAATGGTTGTATC 57.331 33.333 0.00 0.00 35.31 2.24
2191 2510 7.701539 TGTGCTGATAAAAATGGTTGTATCT 57.298 32.000 0.00 0.00 35.64 1.98
2192 2511 8.800370 TGTGCTGATAAAAATGGTTGTATCTA 57.200 30.769 0.00 0.00 35.64 1.98
2193 2512 8.892723 TGTGCTGATAAAAATGGTTGTATCTAG 58.107 33.333 0.00 0.00 35.64 2.43
2194 2513 9.109393 GTGCTGATAAAAATGGTTGTATCTAGA 57.891 33.333 0.00 0.00 35.64 2.43
2195 2514 9.109393 TGCTGATAAAAATGGTTGTATCTAGAC 57.891 33.333 0.00 0.00 35.64 2.59
2196 2515 9.331282 GCTGATAAAAATGGTTGTATCTAGACT 57.669 33.333 0.00 0.00 35.64 3.24
2229 2548 9.747898 AGTTATAGACACATCCATTTTTAACCA 57.252 29.630 0.00 0.00 0.00 3.67
2234 2553 8.193953 AGACACATCCATTTTTAACCATTTCT 57.806 30.769 0.00 0.00 0.00 2.52
2235 2554 9.308000 AGACACATCCATTTTTAACCATTTCTA 57.692 29.630 0.00 0.00 0.00 2.10
2236 2555 9.573133 GACACATCCATTTTTAACCATTTCTAG 57.427 33.333 0.00 0.00 0.00 2.43
2237 2556 8.531146 ACACATCCATTTTTAACCATTTCTAGG 58.469 33.333 0.00 0.00 0.00 3.02
2238 2557 8.748412 CACATCCATTTTTAACCATTTCTAGGA 58.252 33.333 0.00 0.00 0.00 2.94
2239 2558 8.749354 ACATCCATTTTTAACCATTTCTAGGAC 58.251 33.333 0.00 0.00 0.00 3.85
2240 2559 8.748412 CATCCATTTTTAACCATTTCTAGGACA 58.252 33.333 0.00 0.00 0.00 4.02
2241 2560 8.713708 TCCATTTTTAACCATTTCTAGGACAA 57.286 30.769 0.00 0.00 0.00 3.18
2242 2561 8.802267 TCCATTTTTAACCATTTCTAGGACAAG 58.198 33.333 0.00 0.00 0.00 3.16
2243 2562 8.585018 CCATTTTTAACCATTTCTAGGACAAGT 58.415 33.333 0.00 0.00 0.00 3.16
2249 2568 7.939784 AACCATTTCTAGGACAAGTATTTCC 57.060 36.000 0.00 0.00 0.00 3.13
2250 2569 6.113411 ACCATTTCTAGGACAAGTATTTCCG 58.887 40.000 0.00 0.00 36.95 4.30
2251 2570 5.527582 CCATTTCTAGGACAAGTATTTCCGG 59.472 44.000 0.00 0.00 36.95 5.14
2252 2571 6.346096 CATTTCTAGGACAAGTATTTCCGGA 58.654 40.000 0.00 0.00 36.95 5.14
2253 2572 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
2254 2573 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
2255 2574 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2256 2575 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2257 2576 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2258 2577 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2259 2578 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2260 2579 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2311 2630 6.679884 GCTTGTCTACTACGTACTTTATGCCT 60.680 42.308 0.00 0.00 0.00 4.75
2377 2696 7.918562 TCTGCTTTTAATTTTGCTTTAAGTCGT 59.081 29.630 0.00 0.00 0.00 4.34
2388 2707 2.759538 TTAAGTCGTTTTTGTGGCCG 57.240 45.000 0.00 0.00 0.00 6.13
2403 2722 2.431771 CCGTCGGATGTGCACGAA 60.432 61.111 13.13 0.00 41.17 3.85
2408 2727 1.061131 GTCGGATGTGCACGAATCTTG 59.939 52.381 13.13 7.76 41.17 3.02
2457 2776 1.729586 TTGGGGCTTCAGTAGTCTGT 58.270 50.000 0.00 0.00 41.91 3.41
2509 3705 1.002544 GTGTTGGTCAGGAGAAGGGAG 59.997 57.143 0.00 0.00 0.00 4.30
2527 3723 4.650085 GGGGGAGGATAGGTGGAG 57.350 66.667 0.00 0.00 0.00 3.86
2529 3725 1.632740 GGGGAGGATAGGTGGAGGT 59.367 63.158 0.00 0.00 0.00 3.85
2543 3739 1.539124 GAGGTGGTGGAGGGGAGTT 60.539 63.158 0.00 0.00 0.00 3.01
2550 3746 3.082619 TGGAGGGGAGTTACCACAG 57.917 57.895 0.00 0.00 46.31 3.66
2551 3747 0.192566 TGGAGGGGAGTTACCACAGT 59.807 55.000 0.00 0.00 46.31 3.55
2552 3748 0.903236 GGAGGGGAGTTACCACAGTC 59.097 60.000 0.00 0.00 46.31 3.51
2553 3749 0.903236 GAGGGGAGTTACCACAGTCC 59.097 60.000 0.00 0.00 46.31 3.85
2554 3750 0.903454 AGGGGAGTTACCACAGTCCG 60.903 60.000 0.00 0.00 46.31 4.79
2555 3751 1.079336 GGGAGTTACCACAGTCCGC 60.079 63.158 0.00 0.00 41.20 5.54
2596 3792 1.749033 GGAGGTAATGGAGAGCGGG 59.251 63.158 0.00 0.00 0.00 6.13
2598 3794 0.389757 GAGGTAATGGAGAGCGGGAC 59.610 60.000 0.00 0.00 0.00 4.46
2631 3827 3.415087 CCCTGGGGCCTGGAAGAG 61.415 72.222 15.80 0.00 37.23 2.85
2632 3828 3.415087 CCTGGGGCCTGGAAGAGG 61.415 72.222 0.84 0.00 46.13 3.69
2653 3849 3.006756 GCCTAGCTGTCGTGGAGCA 62.007 63.158 0.00 0.00 39.05 4.26
2672 3868 1.006813 AGCAGGAGGAAGGAGAGAGA 58.993 55.000 0.00 0.00 0.00 3.10
2681 3877 2.291670 GGAAGGAGAGAGAGTGGTACCA 60.292 54.545 11.60 11.60 0.00 3.25
2716 3912 4.821589 CTTCTCCGCCAGTCCCGC 62.822 72.222 0.00 0.00 0.00 6.13
2731 3927 2.048597 CGCCACGAGCAGGTGTTA 60.049 61.111 6.44 0.00 44.04 2.41
2732 3928 2.094659 CGCCACGAGCAGGTGTTAG 61.095 63.158 6.44 0.00 44.04 2.34
2733 3929 2.391389 GCCACGAGCAGGTGTTAGC 61.391 63.158 6.44 0.14 42.97 3.09
2735 3931 1.016130 CCACGAGCAGGTGTTAGCTG 61.016 60.000 0.00 3.80 45.86 4.24
2736 3932 1.016130 CACGAGCAGGTGTTAGCTGG 61.016 60.000 9.71 0.00 43.49 4.85
2740 3936 2.846371 GCAGGTGTTAGCTGGTGAG 58.154 57.895 9.71 0.00 43.49 3.51
2741 3937 0.674895 GCAGGTGTTAGCTGGTGAGG 60.675 60.000 9.71 0.00 43.49 3.86
2742 3938 0.687354 CAGGTGTTAGCTGGTGAGGT 59.313 55.000 0.00 0.00 39.87 3.85
2743 3939 0.977395 AGGTGTTAGCTGGTGAGGTC 59.023 55.000 0.00 0.00 0.00 3.85
2745 3941 0.389948 GTGTTAGCTGGTGAGGTCGG 60.390 60.000 0.00 0.00 0.00 4.79
2746 3942 0.541063 TGTTAGCTGGTGAGGTCGGA 60.541 55.000 0.00 0.00 0.00 4.55
2747 3943 0.606604 GTTAGCTGGTGAGGTCGGAA 59.393 55.000 0.00 0.00 0.00 4.30
2748 3944 0.606604 TTAGCTGGTGAGGTCGGAAC 59.393 55.000 0.00 0.00 0.00 3.62
2749 3945 1.255667 TAGCTGGTGAGGTCGGAACC 61.256 60.000 0.00 0.00 46.87 3.62
2784 3980 0.391661 ATGTCGTTGCCGCTTCTCAT 60.392 50.000 0.00 0.00 0.00 2.90
2789 3985 1.005037 TTGCCGCTTCTCATGTCGT 60.005 52.632 0.00 0.00 0.00 4.34
2790 3986 1.014044 TTGCCGCTTCTCATGTCGTC 61.014 55.000 0.00 0.00 0.00 4.20
2791 3987 1.153745 GCCGCTTCTCATGTCGTCT 60.154 57.895 0.00 0.00 0.00 4.18
2793 3989 0.109086 CCGCTTCTCATGTCGTCTGT 60.109 55.000 0.00 0.00 0.00 3.41
2795 3991 1.667177 CGCTTCTCATGTCGTCTGTGT 60.667 52.381 0.00 0.00 0.00 3.72
2816 4036 4.218200 TGTGCTTACACCAATTTCATGAGG 59.782 41.667 0.00 0.00 46.86 3.86
2848 4068 5.154932 ACAACGTCTCGATTCTTAGTTCAG 58.845 41.667 0.00 0.00 0.00 3.02
2860 4080 0.685097 TAGTTCAGTGGACCTGTGGC 59.315 55.000 0.00 0.00 42.19 5.01
2863 4083 2.357517 CAGTGGACCTGTGGCGTC 60.358 66.667 0.00 0.00 36.37 5.19
2873 4093 1.955529 CTGTGGCGTCCGATGTTTCG 61.956 60.000 0.00 0.00 45.08 3.46
2886 4106 3.364621 CGATGTTTCGCCCAAGAATTTTG 59.635 43.478 0.00 0.00 38.75 2.44
2897 4117 1.079888 GAATTTTGGGGGCTGTGCG 60.080 57.895 0.00 0.00 0.00 5.34
2938 4158 5.536161 CCTTCAGATTATGTTTATGTGGGGG 59.464 44.000 0.00 0.00 0.00 5.40
2992 4212 3.774066 TGTCTGTCGATCAGTATTGCAG 58.226 45.455 12.62 2.12 43.97 4.41
3013 4233 9.772973 TTGCAGTTCAGATTAGTTAGTCTTTTA 57.227 29.630 0.00 0.00 0.00 1.52
3014 4234 9.772973 TGCAGTTCAGATTAGTTAGTCTTTTAA 57.227 29.630 0.00 0.00 0.00 1.52
3046 4267 4.461431 TCAGATTAGTTAGCCTGTCGTGAA 59.539 41.667 0.00 0.00 0.00 3.18
3053 4274 1.981256 AGCCTGTCGTGAATTTTGGT 58.019 45.000 0.00 0.00 0.00 3.67
3059 4280 3.879427 TGTCGTGAATTTTGGTTTAGCG 58.121 40.909 0.00 0.00 0.00 4.26
3060 4281 3.312973 TGTCGTGAATTTTGGTTTAGCGT 59.687 39.130 0.00 0.00 0.00 5.07
3061 4282 4.201930 TGTCGTGAATTTTGGTTTAGCGTT 60.202 37.500 0.00 0.00 0.00 4.84
3062 4283 4.736307 GTCGTGAATTTTGGTTTAGCGTTT 59.264 37.500 0.00 0.00 0.00 3.60
3063 4284 5.230516 GTCGTGAATTTTGGTTTAGCGTTTT 59.769 36.000 0.00 0.00 0.00 2.43
3064 4285 5.805994 TCGTGAATTTTGGTTTAGCGTTTTT 59.194 32.000 0.00 0.00 0.00 1.94
3065 4286 6.020520 TCGTGAATTTTGGTTTAGCGTTTTTC 60.021 34.615 0.00 0.00 0.00 2.29
3066 4287 6.117542 GTGAATTTTGGTTTAGCGTTTTTCG 58.882 36.000 0.00 0.00 43.12 3.46
3067 4288 5.805994 TGAATTTTGGTTTAGCGTTTTTCGT 59.194 32.000 0.00 0.00 42.13 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.104965 CCCATAATGTTAGAGTTTTGTCGAATA 57.895 33.333 0.00 0.00 0.00 1.75
7 8 7.610305 ACCCATAATGTTAGAGTTTTGTCGAAT 59.390 33.333 0.00 0.00 0.00 3.34
8 9 6.938030 ACCCATAATGTTAGAGTTTTGTCGAA 59.062 34.615 0.00 0.00 0.00 3.71
9 10 6.469410 ACCCATAATGTTAGAGTTTTGTCGA 58.531 36.000 0.00 0.00 0.00 4.20
10 11 6.370442 TGACCCATAATGTTAGAGTTTTGTCG 59.630 38.462 0.00 0.00 0.00 4.35
11 12 7.681939 TGACCCATAATGTTAGAGTTTTGTC 57.318 36.000 0.00 0.00 0.00 3.18
12 13 7.504238 TGTTGACCCATAATGTTAGAGTTTTGT 59.496 33.333 0.00 0.00 0.00 2.83
13 14 7.881142 TGTTGACCCATAATGTTAGAGTTTTG 58.119 34.615 0.00 0.00 0.00 2.44
14 15 8.650143 ATGTTGACCCATAATGTTAGAGTTTT 57.350 30.769 0.00 0.00 0.00 2.43
15 16 8.522830 CAATGTTGACCCATAATGTTAGAGTTT 58.477 33.333 0.00 0.00 0.00 2.66
16 17 7.888021 TCAATGTTGACCCATAATGTTAGAGTT 59.112 33.333 0.00 0.00 31.01 3.01
17 18 7.402054 TCAATGTTGACCCATAATGTTAGAGT 58.598 34.615 0.00 0.00 31.01 3.24
18 19 7.864108 TCAATGTTGACCCATAATGTTAGAG 57.136 36.000 0.00 0.00 31.01 2.43
19 20 8.106462 TCTTCAATGTTGACCCATAATGTTAGA 58.894 33.333 0.00 0.00 36.83 2.10
20 21 8.279970 TCTTCAATGTTGACCCATAATGTTAG 57.720 34.615 0.00 0.00 36.83 2.34
21 22 8.685427 CATCTTCAATGTTGACCCATAATGTTA 58.315 33.333 0.00 0.00 36.83 2.41
22 23 7.549839 CATCTTCAATGTTGACCCATAATGTT 58.450 34.615 0.00 0.00 36.83 2.71
23 24 6.406177 GCATCTTCAATGTTGACCCATAATGT 60.406 38.462 0.00 0.00 36.83 2.71
24 25 5.981315 GCATCTTCAATGTTGACCCATAATG 59.019 40.000 0.00 0.00 36.83 1.90
25 26 5.069516 GGCATCTTCAATGTTGACCCATAAT 59.930 40.000 0.00 0.00 36.83 1.28
26 27 4.402155 GGCATCTTCAATGTTGACCCATAA 59.598 41.667 0.00 0.00 36.83 1.90
27 28 3.953612 GGCATCTTCAATGTTGACCCATA 59.046 43.478 0.00 0.00 36.83 2.74
28 29 2.762327 GGCATCTTCAATGTTGACCCAT 59.238 45.455 0.00 0.00 36.83 4.00
29 30 2.170166 GGCATCTTCAATGTTGACCCA 58.830 47.619 0.00 0.00 36.83 4.51
30 31 1.478105 GGGCATCTTCAATGTTGACCC 59.522 52.381 0.00 0.00 36.83 4.46
31 32 2.450476 AGGGCATCTTCAATGTTGACC 58.550 47.619 0.00 0.00 36.83 4.02
32 33 5.643379 TTAAGGGCATCTTCAATGTTGAC 57.357 39.130 0.00 0.00 36.83 3.18
33 34 6.855763 AATTAAGGGCATCTTCAATGTTGA 57.144 33.333 0.00 0.00 36.93 3.18
34 35 6.314400 CCAAATTAAGGGCATCTTCAATGTTG 59.686 38.462 0.00 0.00 36.93 3.33
35 36 6.408869 CCAAATTAAGGGCATCTTCAATGTT 58.591 36.000 0.00 0.00 36.93 2.71
36 37 5.104817 CCCAAATTAAGGGCATCTTCAATGT 60.105 40.000 3.15 0.00 39.96 2.71
37 38 5.362263 CCCAAATTAAGGGCATCTTCAATG 58.638 41.667 3.15 0.00 39.96 2.82
38 39 5.619132 CCCAAATTAAGGGCATCTTCAAT 57.381 39.130 3.15 0.00 39.96 2.57
49 50 7.703058 AATGTCTTGTCTACCCAAATTAAGG 57.297 36.000 0.00 0.00 0.00 2.69
52 53 8.736244 GCTTTAATGTCTTGTCTACCCAAATTA 58.264 33.333 0.00 0.00 0.00 1.40
53 54 7.451566 AGCTTTAATGTCTTGTCTACCCAAATT 59.548 33.333 0.00 0.00 0.00 1.82
54 55 6.948309 AGCTTTAATGTCTTGTCTACCCAAAT 59.052 34.615 0.00 0.00 0.00 2.32
55 56 6.206634 CAGCTTTAATGTCTTGTCTACCCAAA 59.793 38.462 0.00 0.00 0.00 3.28
56 57 5.705441 CAGCTTTAATGTCTTGTCTACCCAA 59.295 40.000 0.00 0.00 0.00 4.12
57 58 5.245531 CAGCTTTAATGTCTTGTCTACCCA 58.754 41.667 0.00 0.00 0.00 4.51
58 59 4.636206 CCAGCTTTAATGTCTTGTCTACCC 59.364 45.833 0.00 0.00 0.00 3.69
59 60 5.246307 ACCAGCTTTAATGTCTTGTCTACC 58.754 41.667 0.00 0.00 0.00 3.18
60 61 6.803154 AACCAGCTTTAATGTCTTGTCTAC 57.197 37.500 0.00 0.00 0.00 2.59
61 62 7.676947 ACTAACCAGCTTTAATGTCTTGTCTA 58.323 34.615 0.00 0.00 0.00 2.59
62 63 6.534634 ACTAACCAGCTTTAATGTCTTGTCT 58.465 36.000 0.00 0.00 0.00 3.41
63 64 6.803154 ACTAACCAGCTTTAATGTCTTGTC 57.197 37.500 0.00 0.00 0.00 3.18
64 65 7.450903 AGTACTAACCAGCTTTAATGTCTTGT 58.549 34.615 0.00 0.00 0.00 3.16
65 66 7.907214 AGTACTAACCAGCTTTAATGTCTTG 57.093 36.000 0.00 0.00 0.00 3.02
66 67 9.601217 CATAGTACTAACCAGCTTTAATGTCTT 57.399 33.333 6.70 0.00 0.00 3.01
67 68 8.978472 TCATAGTACTAACCAGCTTTAATGTCT 58.022 33.333 6.70 0.00 0.00 3.41
68 69 9.765795 ATCATAGTACTAACCAGCTTTAATGTC 57.234 33.333 6.70 0.00 0.00 3.06
73 74 9.817809 CTTCAATCATAGTACTAACCAGCTTTA 57.182 33.333 6.70 0.00 0.00 1.85
74 75 7.281100 GCTTCAATCATAGTACTAACCAGCTTT 59.719 37.037 6.70 0.00 0.00 3.51
75 76 6.763610 GCTTCAATCATAGTACTAACCAGCTT 59.236 38.462 6.70 0.00 0.00 3.74
76 77 6.098982 AGCTTCAATCATAGTACTAACCAGCT 59.901 38.462 6.70 9.76 0.00 4.24
77 78 6.284459 AGCTTCAATCATAGTACTAACCAGC 58.716 40.000 6.70 7.83 0.00 4.85
78 79 7.596995 GCTAGCTTCAATCATAGTACTAACCAG 59.403 40.741 7.70 0.00 0.00 4.00
79 80 7.434492 GCTAGCTTCAATCATAGTACTAACCA 58.566 38.462 7.70 0.00 0.00 3.67
80 81 6.583050 CGCTAGCTTCAATCATAGTACTAACC 59.417 42.308 13.93 0.00 0.00 2.85
81 82 7.140048 ACGCTAGCTTCAATCATAGTACTAAC 58.860 38.462 13.93 0.00 0.00 2.34
82 83 7.273320 ACGCTAGCTTCAATCATAGTACTAA 57.727 36.000 13.93 0.00 0.00 2.24
83 84 6.879276 ACGCTAGCTTCAATCATAGTACTA 57.121 37.500 13.93 4.77 0.00 1.82
84 85 5.776173 ACGCTAGCTTCAATCATAGTACT 57.224 39.130 13.93 0.00 0.00 2.73
85 86 7.085116 ACATACGCTAGCTTCAATCATAGTAC 58.915 38.462 13.93 0.00 0.00 2.73
86 87 7.215719 ACATACGCTAGCTTCAATCATAGTA 57.784 36.000 13.93 3.80 0.00 1.82
87 88 6.090483 ACATACGCTAGCTTCAATCATAGT 57.910 37.500 13.93 1.46 0.00 2.12
88 89 7.169813 TCAAACATACGCTAGCTTCAATCATAG 59.830 37.037 13.93 0.00 0.00 2.23
89 90 6.983890 TCAAACATACGCTAGCTTCAATCATA 59.016 34.615 13.93 0.00 0.00 2.15
90 91 5.817296 TCAAACATACGCTAGCTTCAATCAT 59.183 36.000 13.93 0.00 0.00 2.45
91 92 5.175127 TCAAACATACGCTAGCTTCAATCA 58.825 37.500 13.93 0.00 0.00 2.57
92 93 5.718649 TCAAACATACGCTAGCTTCAATC 57.281 39.130 13.93 0.00 0.00 2.67
93 94 5.447818 GCTTCAAACATACGCTAGCTTCAAT 60.448 40.000 13.93 0.00 0.00 2.57
94 95 4.142902 GCTTCAAACATACGCTAGCTTCAA 60.143 41.667 13.93 0.00 0.00 2.69
95 96 3.370978 GCTTCAAACATACGCTAGCTTCA 59.629 43.478 13.93 0.00 0.00 3.02
96 97 3.619038 AGCTTCAAACATACGCTAGCTTC 59.381 43.478 13.93 0.00 34.05 3.86
97 98 3.600388 AGCTTCAAACATACGCTAGCTT 58.400 40.909 13.93 5.97 34.05 3.74
98 99 3.252974 AGCTTCAAACATACGCTAGCT 57.747 42.857 13.93 2.46 33.00 3.32
99 100 4.700596 CTAGCTTCAAACATACGCTAGC 57.299 45.455 4.06 4.06 42.27 3.42
101 102 3.113322 CGCTAGCTTCAAACATACGCTA 58.887 45.455 13.93 0.00 32.49 4.26
102 103 1.927174 CGCTAGCTTCAAACATACGCT 59.073 47.619 13.93 0.00 34.88 5.07
103 104 1.592350 GCGCTAGCTTCAAACATACGC 60.592 52.381 13.93 0.00 41.01 4.42
104 105 1.331161 CGCGCTAGCTTCAAACATACG 60.331 52.381 13.93 0.00 42.32 3.06
105 106 1.659098 ACGCGCTAGCTTCAAACATAC 59.341 47.619 13.93 0.00 42.32 2.39
106 107 1.658596 CACGCGCTAGCTTCAAACATA 59.341 47.619 13.93 0.00 42.32 2.29
107 108 0.443869 CACGCGCTAGCTTCAAACAT 59.556 50.000 13.93 0.00 42.32 2.71
108 109 0.598942 TCACGCGCTAGCTTCAAACA 60.599 50.000 13.93 0.00 42.32 2.83
109 110 0.093705 CTCACGCGCTAGCTTCAAAC 59.906 55.000 13.93 0.00 42.32 2.93
110 111 0.319555 ACTCACGCGCTAGCTTCAAA 60.320 50.000 13.93 0.00 42.32 2.69
111 112 0.319555 AACTCACGCGCTAGCTTCAA 60.320 50.000 13.93 0.00 42.32 2.69
112 113 0.319555 AAACTCACGCGCTAGCTTCA 60.320 50.000 13.93 0.00 42.32 3.02
113 114 1.625616 TAAACTCACGCGCTAGCTTC 58.374 50.000 13.93 3.42 42.32 3.86
114 115 2.074547 TTAAACTCACGCGCTAGCTT 57.925 45.000 13.93 3.95 42.32 3.74
115 116 2.295253 ATTAAACTCACGCGCTAGCT 57.705 45.000 13.93 0.00 42.32 3.32
116 117 2.093783 ACAATTAAACTCACGCGCTAGC 59.906 45.455 5.73 4.06 40.74 3.42
117 118 3.366724 TCACAATTAAACTCACGCGCTAG 59.633 43.478 5.73 6.35 0.00 3.42
118 119 3.318886 TCACAATTAAACTCACGCGCTA 58.681 40.909 5.73 0.00 0.00 4.26
119 120 2.139917 TCACAATTAAACTCACGCGCT 58.860 42.857 5.73 0.00 0.00 5.92
120 121 2.587612 TCACAATTAAACTCACGCGC 57.412 45.000 5.73 0.00 0.00 6.86
121 122 3.867665 TGTTCACAATTAAACTCACGCG 58.132 40.909 3.53 3.53 0.00 6.01
122 123 4.024387 TCCTGTTCACAATTAAACTCACGC 60.024 41.667 0.00 0.00 0.00 5.34
123 124 5.465390 TCTCCTGTTCACAATTAAACTCACG 59.535 40.000 0.00 0.00 0.00 4.35
124 125 6.564125 CGTCTCCTGTTCACAATTAAACTCAC 60.564 42.308 0.00 0.00 0.00 3.51
125 126 5.465390 CGTCTCCTGTTCACAATTAAACTCA 59.535 40.000 0.00 0.00 0.00 3.41
126 127 5.465724 ACGTCTCCTGTTCACAATTAAACTC 59.534 40.000 0.00 0.00 0.00 3.01
127 128 5.365619 ACGTCTCCTGTTCACAATTAAACT 58.634 37.500 0.00 0.00 0.00 2.66
128 129 5.333875 GGACGTCTCCTGTTCACAATTAAAC 60.334 44.000 16.46 0.00 33.07 2.01
129 130 4.753107 GGACGTCTCCTGTTCACAATTAAA 59.247 41.667 16.46 0.00 33.07 1.52
130 131 4.039973 AGGACGTCTCCTGTTCACAATTAA 59.960 41.667 16.46 0.00 46.24 1.40
131 132 3.576982 AGGACGTCTCCTGTTCACAATTA 59.423 43.478 16.46 0.00 46.24 1.40
132 133 2.368875 AGGACGTCTCCTGTTCACAATT 59.631 45.455 16.46 0.00 46.24 2.32
133 134 1.971357 AGGACGTCTCCTGTTCACAAT 59.029 47.619 16.46 0.00 46.24 2.71
134 135 1.410004 AGGACGTCTCCTGTTCACAA 58.590 50.000 16.46 0.00 46.24 3.33
135 136 3.015077 AAGAGGACGTCTCCTGTTCACA 61.015 50.000 16.46 0.00 45.16 3.58
136 137 1.614413 AAGAGGACGTCTCCTGTTCAC 59.386 52.381 16.46 0.00 45.16 3.18
137 138 1.996798 AAGAGGACGTCTCCTGTTCA 58.003 50.000 16.46 0.00 45.16 3.18
143 144 2.438411 TCTGAAGAAGAGGACGTCTCC 58.562 52.381 16.46 7.54 43.44 3.71
153 154 6.156775 TCATCTCTCTCTCTCTCTGAAGAAGA 59.843 42.308 0.00 0.00 0.00 2.87
154 155 6.351711 TCATCTCTCTCTCTCTCTGAAGAAG 58.648 44.000 0.00 0.00 0.00 2.85
155 156 6.312141 TCATCTCTCTCTCTCTCTGAAGAA 57.688 41.667 0.00 0.00 0.00 2.52
156 157 5.955961 TCATCTCTCTCTCTCTCTGAAGA 57.044 43.478 0.00 0.00 0.00 2.87
157 158 6.877855 CCTATCATCTCTCTCTCTCTCTGAAG 59.122 46.154 0.00 0.00 0.00 3.02
158 159 6.329986 ACCTATCATCTCTCTCTCTCTCTGAA 59.670 42.308 0.00 0.00 0.00 3.02
159 160 5.846164 ACCTATCATCTCTCTCTCTCTCTGA 59.154 44.000 0.00 0.00 0.00 3.27
160 161 5.936372 CACCTATCATCTCTCTCTCTCTCTG 59.064 48.000 0.00 0.00 0.00 3.35
200 201 2.507992 CGGAAGAGCAGCGTGAGG 60.508 66.667 0.00 0.00 0.00 3.86
211 212 2.882876 GTCCAGCTACGCGGAAGA 59.117 61.111 12.47 0.00 34.39 2.87
217 218 0.714439 GAGTTTTCGTCCAGCTACGC 59.286 55.000 4.11 0.00 42.56 4.42
271 272 6.763135 ACGAGATCAATCAAGCAAGCTAATTA 59.237 34.615 0.00 0.00 0.00 1.40
336 337 1.658686 GGAGAGCGTGTCGGATGAGT 61.659 60.000 0.00 0.00 0.00 3.41
339 340 1.517257 GTGGAGAGCGTGTCGGATG 60.517 63.158 0.00 0.00 0.00 3.51
343 344 0.097325 GTCTAGTGGAGAGCGTGTCG 59.903 60.000 0.00 0.00 33.72 4.35
344 345 1.131504 CTGTCTAGTGGAGAGCGTGTC 59.868 57.143 0.00 0.00 33.72 3.67
427 428 2.212794 GAGGAGACGACCAGAGGGGA 62.213 65.000 0.00 0.00 41.15 4.81
481 482 2.665185 GCCACCGAAGCAGAACGT 60.665 61.111 0.00 0.00 0.00 3.99
483 484 2.357034 TCGCCACCGAAGCAGAAC 60.357 61.111 0.00 0.00 41.17 3.01
572 573 3.559171 CGGGTCCTCTCTTCCATTTTTGA 60.559 47.826 0.00 0.00 0.00 2.69
576 577 0.912486 CCGGGTCCTCTCTTCCATTT 59.088 55.000 0.00 0.00 0.00 2.32
642 651 6.012658 TCAGTGACAAATTTAAGCACCATC 57.987 37.500 11.41 0.00 0.00 3.51
643 652 6.015180 ACATCAGTGACAAATTTAAGCACCAT 60.015 34.615 0.00 4.61 0.00 3.55
651 660 8.715191 AAAAGCAAACATCAGTGACAAATTTA 57.285 26.923 0.00 0.00 0.00 1.40
652 661 7.614124 AAAAGCAAACATCAGTGACAAATTT 57.386 28.000 0.00 0.00 0.00 1.82
654 663 7.981225 ACTTAAAAGCAAACATCAGTGACAAAT 59.019 29.630 0.00 0.00 0.00 2.32
655 664 7.275341 CACTTAAAAGCAAACATCAGTGACAAA 59.725 33.333 0.00 0.00 33.64 2.83
656 665 6.751425 CACTTAAAAGCAAACATCAGTGACAA 59.249 34.615 0.00 0.00 33.64 3.18
657 666 6.127758 ACACTTAAAAGCAAACATCAGTGACA 60.128 34.615 0.00 0.00 35.43 3.58
658 667 6.265577 ACACTTAAAAGCAAACATCAGTGAC 58.734 36.000 0.00 0.00 35.43 3.67
659 668 6.449635 ACACTTAAAAGCAAACATCAGTGA 57.550 33.333 0.00 0.00 35.43 3.41
660 669 7.524294 AAACACTTAAAAGCAAACATCAGTG 57.476 32.000 0.00 0.00 37.11 3.66
661 670 9.646427 TTTAAACACTTAAAAGCAAACATCAGT 57.354 25.926 0.00 0.00 34.72 3.41
663 672 9.646427 AGTTTAAACACTTAAAAGCAAACATCA 57.354 25.926 20.06 0.00 38.43 3.07
676 685 9.235537 GGCGTATTTTTCAAGTTTAAACACTTA 57.764 29.630 20.06 0.34 35.10 2.24
677 686 7.043920 CGGCGTATTTTTCAAGTTTAAACACTT 60.044 33.333 20.06 3.95 37.49 3.16
703 712 7.486232 GCTCATGCCAAATTCTAAAACTAGTTC 59.514 37.037 8.95 0.00 0.00 3.01
712 721 2.159393 GCACGCTCATGCCAAATTCTAA 60.159 45.455 0.00 0.00 39.86 2.10
730 739 3.871006 TGAGATCATCACCGTAATTGCAC 59.129 43.478 0.00 0.00 31.12 4.57
757 766 5.564848 GCCACATCAGAGCATTATACGTCTA 60.565 44.000 0.00 0.00 0.00 2.59
771 780 1.302752 GCCACTGTGCCACATCAGA 60.303 57.895 0.00 0.00 35.84 3.27
792 801 0.605589 ACGTAGAAAACAGGCTGCCC 60.606 55.000 16.57 0.00 0.00 5.36
798 807 3.837213 TCCGTAGACGTAGAAAACAGG 57.163 47.619 0.85 0.00 37.74 4.00
815 824 5.410132 TGCAAATACGGTAATAATCCATCCG 59.590 40.000 0.00 0.00 45.53 4.18
816 825 6.608610 GTGCAAATACGGTAATAATCCATCC 58.391 40.000 0.00 0.00 0.00 3.51
817 826 6.304126 CGTGCAAATACGGTAATAATCCATC 58.696 40.000 0.00 0.00 40.22 3.51
818 827 5.334569 GCGTGCAAATACGGTAATAATCCAT 60.335 40.000 0.00 0.00 43.87 3.41
820 829 4.460505 GCGTGCAAATACGGTAATAATCC 58.539 43.478 0.00 0.00 43.87 3.01
829 838 0.993532 TAACGAGCGTGCAAATACGG 59.006 50.000 0.00 0.00 43.87 4.02
833 842 0.098728 GCCATAACGAGCGTGCAAAT 59.901 50.000 0.00 0.00 0.00 2.32
836 845 0.953471 AAAGCCATAACGAGCGTGCA 60.953 50.000 0.00 0.00 0.00 4.57
837 846 0.168128 AAAAGCCATAACGAGCGTGC 59.832 50.000 0.00 0.00 0.00 5.34
838 847 1.465689 CCAAAAGCCATAACGAGCGTG 60.466 52.381 0.00 0.00 0.00 5.34
839 848 0.802494 CCAAAAGCCATAACGAGCGT 59.198 50.000 0.00 0.00 0.00 5.07
840 849 0.802494 ACCAAAAGCCATAACGAGCG 59.198 50.000 0.00 0.00 0.00 5.03
841 850 2.227865 TCAACCAAAAGCCATAACGAGC 59.772 45.455 0.00 0.00 0.00 5.03
842 851 3.670627 GCTCAACCAAAAGCCATAACGAG 60.671 47.826 0.00 0.00 32.22 4.18
864 1162 1.781555 CTATGCGATTTAGCGGCGG 59.218 57.895 9.78 0.00 40.67 6.13
869 1167 1.194772 GTTCGGGCTATGCGATTTAGC 59.805 52.381 0.00 0.00 41.08 3.09
888 1186 8.736244 ACTACAATCCAATGTTTTAAATAGCGT 58.264 29.630 0.00 0.00 34.75 5.07
954 1252 1.141657 TGCTCACAGCTGAAGTCCTTT 59.858 47.619 23.35 0.00 42.97 3.11
974 1272 0.036022 GGCTGAACAGGAGAGCAAGT 59.964 55.000 3.99 0.00 34.20 3.16
1008 1306 2.740055 GTGAGGTCTGTGCAGGCG 60.740 66.667 0.00 0.00 32.85 5.52
1018 1316 1.021390 CGCAAGACATGGGTGAGGTC 61.021 60.000 0.00 0.00 43.02 3.85
1044 1342 1.301165 GGTGTACTTGAACCGCCGT 60.301 57.895 0.00 0.00 0.00 5.68
1101 1399 2.183478 TCCATCTGCGTTTGATGTGT 57.817 45.000 11.37 0.00 39.54 3.72
1267 1568 1.405661 GGATGGTTCACGAACTCCCTC 60.406 57.143 9.63 2.62 40.94 4.30
1290 1591 5.886960 ATGCTACTGACTGACAAATTTCC 57.113 39.130 0.00 0.00 0.00 3.13
1301 1602 3.307762 GGGTTTCCTGAATGCTACTGACT 60.308 47.826 0.00 0.00 0.00 3.41
1365 1666 6.346919 CCTTGAGATAACGCGATTTATTCAGG 60.347 42.308 15.93 12.86 0.00 3.86
1590 1903 1.944430 GCCTTAAAGACACGGGACCTG 60.944 57.143 0.00 0.00 0.00 4.00
1676 1989 1.448985 GAGCAACGCCTTGAATACCA 58.551 50.000 0.00 0.00 0.00 3.25
1739 2052 1.578215 AATCATGGCCTCTGCACCCT 61.578 55.000 3.32 0.00 40.13 4.34
1787 2106 2.976903 GCTCATGCGCCTCATCCC 60.977 66.667 4.18 0.00 31.79 3.85
2127 2446 3.127548 CGGCAAGCTCAAACAGATACAAT 59.872 43.478 0.00 0.00 0.00 2.71
2128 2447 2.483877 CGGCAAGCTCAAACAGATACAA 59.516 45.455 0.00 0.00 0.00 2.41
2129 2448 2.076100 CGGCAAGCTCAAACAGATACA 58.924 47.619 0.00 0.00 0.00 2.29
2130 2449 1.398390 CCGGCAAGCTCAAACAGATAC 59.602 52.381 0.00 0.00 0.00 2.24
2131 2450 1.678728 CCCGGCAAGCTCAAACAGATA 60.679 52.381 0.00 0.00 0.00 1.98
2132 2451 0.962356 CCCGGCAAGCTCAAACAGAT 60.962 55.000 0.00 0.00 0.00 2.90
2133 2452 1.600636 CCCGGCAAGCTCAAACAGA 60.601 57.895 0.00 0.00 0.00 3.41
2134 2453 2.956987 CCCGGCAAGCTCAAACAG 59.043 61.111 0.00 0.00 0.00 3.16
2135 2454 3.294493 GCCCGGCAAGCTCAAACA 61.294 61.111 3.91 0.00 0.00 2.83
2136 2455 2.639327 ATGCCCGGCAAGCTCAAAC 61.639 57.895 18.00 0.00 43.62 2.93
2137 2456 2.283101 ATGCCCGGCAAGCTCAAA 60.283 55.556 18.00 0.00 43.62 2.69
2138 2457 3.063704 CATGCCCGGCAAGCTCAA 61.064 61.111 18.00 0.00 43.62 3.02
2143 2462 3.346631 GACAAGCATGCCCGGCAAG 62.347 63.158 18.00 13.92 43.62 4.01
2144 2463 2.476852 TAGACAAGCATGCCCGGCAA 62.477 55.000 18.00 0.00 43.62 4.52
2145 2464 2.965520 TAGACAAGCATGCCCGGCA 61.966 57.895 16.17 16.17 44.86 5.69
2146 2465 2.124736 TAGACAAGCATGCCCGGC 60.125 61.111 15.66 8.04 0.00 6.13
2147 2466 0.464036 TAGTAGACAAGCATGCCCGG 59.536 55.000 15.66 6.69 0.00 5.73
2148 2467 2.138320 CATAGTAGACAAGCATGCCCG 58.862 52.381 15.66 8.37 0.00 6.13
2149 2468 2.874701 CACATAGTAGACAAGCATGCCC 59.125 50.000 15.66 1.19 0.00 5.36
2150 2469 2.289002 GCACATAGTAGACAAGCATGCC 59.711 50.000 15.66 0.00 0.00 4.40
2151 2470 3.002042 CAGCACATAGTAGACAAGCATGC 59.998 47.826 10.51 10.51 0.00 4.06
2152 2471 4.436332 TCAGCACATAGTAGACAAGCATG 58.564 43.478 0.00 0.00 0.00 4.06
2153 2472 4.743057 TCAGCACATAGTAGACAAGCAT 57.257 40.909 0.00 0.00 0.00 3.79
2154 2473 4.743057 ATCAGCACATAGTAGACAAGCA 57.257 40.909 0.00 0.00 0.00 3.91
2155 2474 7.539712 TTTTATCAGCACATAGTAGACAAGC 57.460 36.000 0.00 0.00 0.00 4.01
2156 2475 9.926751 CATTTTTATCAGCACATAGTAGACAAG 57.073 33.333 0.00 0.00 0.00 3.16
2157 2476 8.892723 CCATTTTTATCAGCACATAGTAGACAA 58.107 33.333 0.00 0.00 0.00 3.18
2158 2477 8.046708 ACCATTTTTATCAGCACATAGTAGACA 58.953 33.333 0.00 0.00 0.00 3.41
2159 2478 8.438676 ACCATTTTTATCAGCACATAGTAGAC 57.561 34.615 0.00 0.00 0.00 2.59
2160 2479 8.892723 CAACCATTTTTATCAGCACATAGTAGA 58.107 33.333 0.00 0.00 0.00 2.59
2161 2480 8.677300 ACAACCATTTTTATCAGCACATAGTAG 58.323 33.333 0.00 0.00 0.00 2.57
2162 2481 8.574251 ACAACCATTTTTATCAGCACATAGTA 57.426 30.769 0.00 0.00 0.00 1.82
2163 2482 7.466746 ACAACCATTTTTATCAGCACATAGT 57.533 32.000 0.00 0.00 0.00 2.12
2164 2483 9.669353 GATACAACCATTTTTATCAGCACATAG 57.331 33.333 0.00 0.00 0.00 2.23
2165 2484 9.407380 AGATACAACCATTTTTATCAGCACATA 57.593 29.630 0.00 0.00 0.00 2.29
2166 2485 8.297470 AGATACAACCATTTTTATCAGCACAT 57.703 30.769 0.00 0.00 0.00 3.21
2167 2486 7.701539 AGATACAACCATTTTTATCAGCACA 57.298 32.000 0.00 0.00 0.00 4.57
2168 2487 9.109393 TCTAGATACAACCATTTTTATCAGCAC 57.891 33.333 0.00 0.00 0.00 4.40
2169 2488 9.109393 GTCTAGATACAACCATTTTTATCAGCA 57.891 33.333 0.00 0.00 0.00 4.41
2170 2489 9.331282 AGTCTAGATACAACCATTTTTATCAGC 57.669 33.333 0.00 0.00 0.00 4.26
2203 2522 9.747898 TGGTTAAAAATGGATGTGTCTATAACT 57.252 29.630 0.00 0.00 0.00 2.24
2208 2527 9.308000 AGAAATGGTTAAAAATGGATGTGTCTA 57.692 29.630 0.00 0.00 0.00 2.59
2209 2528 8.193953 AGAAATGGTTAAAAATGGATGTGTCT 57.806 30.769 0.00 0.00 0.00 3.41
2210 2529 9.573133 CTAGAAATGGTTAAAAATGGATGTGTC 57.427 33.333 0.00 0.00 0.00 3.67
2211 2530 8.531146 CCTAGAAATGGTTAAAAATGGATGTGT 58.469 33.333 0.00 0.00 0.00 3.72
2212 2531 8.748412 TCCTAGAAATGGTTAAAAATGGATGTG 58.252 33.333 0.00 0.00 0.00 3.21
2213 2532 8.749354 GTCCTAGAAATGGTTAAAAATGGATGT 58.251 33.333 0.00 0.00 0.00 3.06
2214 2533 8.748412 TGTCCTAGAAATGGTTAAAAATGGATG 58.252 33.333 0.00 0.00 0.00 3.51
2215 2534 8.893563 TGTCCTAGAAATGGTTAAAAATGGAT 57.106 30.769 0.00 0.00 0.00 3.41
2216 2535 8.713708 TTGTCCTAGAAATGGTTAAAAATGGA 57.286 30.769 0.00 0.00 0.00 3.41
2217 2536 8.585018 ACTTGTCCTAGAAATGGTTAAAAATGG 58.415 33.333 0.00 0.00 0.00 3.16
2223 2542 9.457436 GGAAATACTTGTCCTAGAAATGGTTAA 57.543 33.333 0.00 0.00 0.00 2.01
2224 2543 7.767198 CGGAAATACTTGTCCTAGAAATGGTTA 59.233 37.037 0.00 0.00 0.00 2.85
2225 2544 6.598064 CGGAAATACTTGTCCTAGAAATGGTT 59.402 38.462 0.00 0.00 0.00 3.67
2226 2545 6.113411 CGGAAATACTTGTCCTAGAAATGGT 58.887 40.000 0.00 0.00 0.00 3.55
2227 2546 5.527582 CCGGAAATACTTGTCCTAGAAATGG 59.472 44.000 0.00 0.00 0.00 3.16
2228 2547 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
2229 2548 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
2230 2549 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
2231 2550 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
2232 2551 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
2233 2552 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
2234 2553 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
2235 2554 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2236 2555 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2237 2556 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2238 2557 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2239 2558 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2240 2559 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2241 2560 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2242 2561 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2243 2562 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2244 2563 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2245 2564 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2246 2565 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
2247 2566 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
2248 2567 1.150992 AGATACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
2249 2568 0.465824 ACAGATACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
2250 2569 1.777941 AACAGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2251 2570 2.758979 TCAAACAGATACTCCCTCCGTC 59.241 50.000 0.00 0.00 0.00 4.79
2252 2571 2.761208 CTCAAACAGATACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
2253 2572 2.482142 GCTCAAACAGATACTCCCTCCG 60.482 54.545 0.00 0.00 0.00 4.63
2254 2573 2.769095 AGCTCAAACAGATACTCCCTCC 59.231 50.000 0.00 0.00 0.00 4.30
2255 2574 4.187694 CAAGCTCAAACAGATACTCCCTC 58.812 47.826 0.00 0.00 0.00 4.30
2256 2575 3.620966 GCAAGCTCAAACAGATACTCCCT 60.621 47.826 0.00 0.00 0.00 4.20
2257 2576 2.680339 GCAAGCTCAAACAGATACTCCC 59.320 50.000 0.00 0.00 0.00 4.30
2258 2577 2.680339 GGCAAGCTCAAACAGATACTCC 59.320 50.000 0.00 0.00 0.00 3.85
2259 2578 2.349886 CGGCAAGCTCAAACAGATACTC 59.650 50.000 0.00 0.00 0.00 2.59
2260 2579 2.350522 CGGCAAGCTCAAACAGATACT 58.649 47.619 0.00 0.00 0.00 2.12
2377 2696 0.820074 ACATCCGACGGCCACAAAAA 60.820 50.000 9.66 0.00 0.00 1.94
2388 2707 1.061131 CAAGATTCGTGCACATCCGAC 59.939 52.381 18.64 2.79 31.95 4.79
2401 2720 2.705826 CGAGCAGCGCCAAGATTC 59.294 61.111 2.29 0.00 0.00 2.52
2519 3715 1.080354 CCTCCACCACCTCCACCTA 59.920 63.158 0.00 0.00 0.00 3.08
2527 3723 1.559965 GGTAACTCCCCTCCACCACC 61.560 65.000 0.00 0.00 0.00 4.61
2529 3725 0.838987 GTGGTAACTCCCCTCCACCA 60.839 60.000 0.00 0.00 42.90 4.17
2543 3739 2.986979 TGCTCGCGGACTGTGGTA 60.987 61.111 6.13 0.00 0.00 3.25
2555 3751 2.271607 TAGTTCCTCGCTGCTGCTCG 62.272 60.000 14.03 4.86 36.97 5.03
2574 3770 1.403687 GCTCTCCATTACCTCCCGCT 61.404 60.000 0.00 0.00 0.00 5.52
2620 3816 2.898472 TAGGCTCCCTCTTCCAGGCC 62.898 65.000 0.00 0.00 41.80 5.19
2621 3817 1.383248 TAGGCTCCCTCTTCCAGGC 60.383 63.158 0.00 0.00 41.80 4.85
2622 3818 1.406860 GCTAGGCTCCCTCTTCCAGG 61.407 65.000 0.00 0.00 43.01 4.45
2623 3819 0.398381 AGCTAGGCTCCCTCTTCCAG 60.398 60.000 0.00 0.00 30.62 3.86
2624 3820 0.689080 CAGCTAGGCTCCCTCTTCCA 60.689 60.000 0.00 0.00 36.40 3.53
2625 3821 0.689412 ACAGCTAGGCTCCCTCTTCC 60.689 60.000 0.00 0.00 36.40 3.46
2626 3822 0.750249 GACAGCTAGGCTCCCTCTTC 59.250 60.000 0.00 0.00 36.40 2.87
2627 3823 1.040339 CGACAGCTAGGCTCCCTCTT 61.040 60.000 0.00 0.00 36.40 2.85
2628 3824 1.454847 CGACAGCTAGGCTCCCTCT 60.455 63.158 0.00 0.00 36.40 3.69
2629 3825 1.755008 ACGACAGCTAGGCTCCCTC 60.755 63.158 0.00 0.00 36.40 4.30
2630 3826 2.055042 CACGACAGCTAGGCTCCCT 61.055 63.158 0.00 0.00 36.40 4.20
2631 3827 2.496817 CACGACAGCTAGGCTCCC 59.503 66.667 0.00 0.00 36.40 4.30
2632 3828 2.010582 CTCCACGACAGCTAGGCTCC 62.011 65.000 0.00 0.00 36.40 4.70
2653 3849 1.006813 TCTCTCTCCTTCCTCCTGCT 58.993 55.000 0.00 0.00 0.00 4.24
2672 3868 0.910088 GGCCTCCTCTTGGTACCACT 60.910 60.000 16.04 0.00 34.23 4.00
2716 3912 1.016130 CAGCTAACACCTGCTCGTGG 61.016 60.000 8.33 0.00 37.44 4.94
2717 3913 1.016130 CCAGCTAACACCTGCTCGTG 61.016 60.000 0.00 2.64 37.44 4.35
2718 3914 1.293498 CCAGCTAACACCTGCTCGT 59.707 57.895 0.00 0.00 37.44 4.18
2724 3920 0.977395 GACCTCACCAGCTAACACCT 59.023 55.000 0.00 0.00 0.00 4.00
2725 3921 0.389948 CGACCTCACCAGCTAACACC 60.390 60.000 0.00 0.00 0.00 4.16
2726 3922 0.389948 CCGACCTCACCAGCTAACAC 60.390 60.000 0.00 0.00 0.00 3.32
2728 3924 0.606604 TTCCGACCTCACCAGCTAAC 59.393 55.000 0.00 0.00 0.00 2.34
2731 3927 2.584391 GGTTCCGACCTCACCAGCT 61.584 63.158 0.00 0.00 42.99 4.24
2732 3928 2.047179 GGTTCCGACCTCACCAGC 60.047 66.667 0.00 0.00 42.99 4.85
2733 3929 2.261671 CGGTTCCGACCTCACCAG 59.738 66.667 5.19 0.00 44.20 4.00
2735 3931 4.078516 CCCGGTTCCGACCTCACC 62.079 72.222 13.08 0.00 44.20 4.02
2736 3932 4.754667 GCCCGGTTCCGACCTCAC 62.755 72.222 13.08 0.00 44.20 3.51
2745 3941 4.772687 GTTCCTCCCGCCCGGTTC 62.773 72.222 0.00 0.00 0.00 3.62
2747 3943 3.988050 TATGTTCCTCCCGCCCGGT 62.988 63.158 0.00 0.00 0.00 5.28
2748 3944 2.516888 ATATGTTCCTCCCGCCCGG 61.517 63.158 0.00 0.00 0.00 5.73
2749 3945 1.301716 CATATGTTCCTCCCGCCCG 60.302 63.158 0.00 0.00 0.00 6.13
2750 3946 0.250338 GACATATGTTCCTCCCGCCC 60.250 60.000 10.30 0.00 0.00 6.13
2751 3947 0.600255 CGACATATGTTCCTCCCGCC 60.600 60.000 10.30 0.00 0.00 6.13
2752 3948 0.104304 ACGACATATGTTCCTCCCGC 59.896 55.000 10.30 0.00 0.00 6.13
2753 3949 2.201732 CAACGACATATGTTCCTCCCG 58.798 52.381 10.30 10.09 0.00 5.14
2754 3950 1.940613 GCAACGACATATGTTCCTCCC 59.059 52.381 10.30 0.00 0.00 4.30
2755 3951 1.940613 GGCAACGACATATGTTCCTCC 59.059 52.381 10.30 4.79 0.00 4.30
2795 3991 4.406456 ACCTCATGAAATTGGTGTAAGCA 58.594 39.130 3.67 0.00 46.28 3.91
2816 4036 5.345202 AGAATCGAGACGTTGTTGTTGATAC 59.655 40.000 0.00 0.00 0.00 2.24
2860 4080 1.966493 CTTGGGCGAAACATCGGACG 61.966 60.000 0.07 0.00 0.00 4.79
2863 4083 1.094785 ATTCTTGGGCGAAACATCGG 58.905 50.000 0.07 0.00 0.00 4.18
2912 4132 6.364701 CCCACATAAACATAATCTGAAGGGA 58.635 40.000 0.00 0.00 31.74 4.20
2919 4139 6.463897 CGAGTACCCCCACATAAACATAATCT 60.464 42.308 0.00 0.00 0.00 2.40
2928 4148 4.743124 TGATATCGAGTACCCCCACATAA 58.257 43.478 0.00 0.00 0.00 1.90
2938 4158 9.111613 ACTAGGCAATATACTGATATCGAGTAC 57.888 37.037 13.71 0.00 0.00 2.73
3018 4238 7.327275 CACGACAGGCTAACTAATCTGAATATC 59.673 40.741 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.