Multiple sequence alignment - TraesCS7A01G057000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G057000 chr7A 100.000 2862 0 0 1 2862 27450241 27447380 0.000000e+00 5286
1 TraesCS7A01G057000 chr7A 96.914 972 12 5 1900 2862 696188503 696187541 0.000000e+00 1613
2 TraesCS7A01G057000 chr7A 95.851 964 18 4 1901 2862 112356971 112357914 0.000000e+00 1539
3 TraesCS7A01G057000 chr7A 85.883 1098 111 24 679 1747 27360019 27358937 0.000000e+00 1129
4 TraesCS7A01G057000 chr7A 83.284 341 27 18 339 666 27360425 27360102 1.300000e-73 287
5 TraesCS7A01G057000 chr7A 85.000 140 17 2 12 151 441978269 441978404 3.850000e-29 139
6 TraesCS7A01G057000 chr7A 93.939 66 2 2 1773 1836 27411646 27411581 6.530000e-17 99
7 TraesCS7A01G057000 chrUn 97.086 961 17 2 1902 2862 357010672 357009723 0.000000e+00 1609
8 TraesCS7A01G057000 chrUn 83.995 856 71 26 927 1752 50303123 50303942 0.000000e+00 761
9 TraesCS7A01G057000 chrUn 82.203 590 56 22 679 1243 288174375 288173810 2.010000e-126 462
10 TraesCS7A01G057000 chrUn 82.203 590 56 22 679 1243 291710227 291709662 2.010000e-126 462
11 TraesCS7A01G057000 chrUn 92.991 214 13 2 734 945 50297519 50297732 7.700000e-81 311
12 TraesCS7A01G057000 chrUn 95.270 148 7 0 1292 1439 288173799 288173652 4.770000e-58 235
13 TraesCS7A01G057000 chrUn 95.270 148 7 0 1292 1439 291709651 291709504 4.770000e-58 235
14 TraesCS7A01G057000 chrUn 91.304 115 10 0 315 429 50297344 50297458 1.060000e-34 158
15 TraesCS7A01G057000 chr3A 97.086 961 17 2 1902 2862 37207824 37206875 0.000000e+00 1609
16 TraesCS7A01G057000 chr6B 96.262 963 13 6 1902 2862 679570672 679571613 0.000000e+00 1557
17 TraesCS7A01G057000 chr6B 96.046 961 14 14 1902 2862 52388645 52387709 0.000000e+00 1543
18 TraesCS7A01G057000 chr6B 96.925 813 17 3 1902 2707 552761167 552760356 0.000000e+00 1356
19 TraesCS7A01G057000 chr6B 81.437 167 24 6 1 165 184355834 184355995 2.310000e-26 130
20 TraesCS7A01G057000 chr4A 98.123 746 10 3 1902 2646 648582599 648581857 0.000000e+00 1297
21 TraesCS7A01G057000 chr4A 84.184 980 86 42 1902 2862 726376821 726375892 0.000000e+00 887
22 TraesCS7A01G057000 chr4A 85.868 743 77 11 1026 1752 704526373 704527103 0.000000e+00 765
23 TraesCS7A01G057000 chr4A 82.203 590 56 22 679 1243 703462447 703461882 2.010000e-126 462
24 TraesCS7A01G057000 chr4A 88.424 311 31 4 679 986 704526062 704526370 1.250000e-98 370
25 TraesCS7A01G057000 chr4A 95.270 148 7 0 1292 1439 703461871 703461724 4.770000e-58 235
26 TraesCS7A01G057000 chr4A 87.879 165 17 2 1 165 464699630 464699469 1.050000e-44 191
27 TraesCS7A01G057000 chr7B 96.134 776 9 4 1902 2677 640170091 640169337 0.000000e+00 1247
28 TraesCS7A01G057000 chr6A 96.793 686 9 2 1902 2586 560373793 560373120 0.000000e+00 1133
29 TraesCS7A01G057000 chr3B 85.773 970 110 20 1904 2862 94453043 94453995 0.000000e+00 1002
30 TraesCS7A01G057000 chr7D 85.557 907 78 22 858 1752 27219754 27218889 0.000000e+00 900
31 TraesCS7A01G057000 chr1B 84.195 987 91 34 1902 2862 25228616 25229563 0.000000e+00 898
32 TraesCS7A01G057000 chr1B 90.293 546 31 10 2334 2862 659665537 659666077 0.000000e+00 695
33 TraesCS7A01G057000 chr1B 84.713 157 20 2 6 162 644280539 644280387 1.370000e-33 154
34 TraesCS7A01G057000 chr4D 90.741 162 13 1 1 162 420967030 420966871 6.210000e-52 215
35 TraesCS7A01G057000 chr2A 89.375 160 13 2 1 160 659632519 659632364 6.250000e-47 198
36 TraesCS7A01G057000 chr5D 84.024 169 18 6 1 165 69326037 69326200 1.370000e-33 154
37 TraesCS7A01G057000 chr5D 83.735 166 23 3 1 164 542720746 542720583 1.370000e-33 154
38 TraesCS7A01G057000 chr1D 80.838 167 29 3 1 165 73315065 73315230 8.320000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G057000 chr7A 27447380 27450241 2861 True 5286.0 5286 100.0000 1 2862 1 chr7A.!!$R2 2861
1 TraesCS7A01G057000 chr7A 696187541 696188503 962 True 1613.0 1613 96.9140 1900 2862 1 chr7A.!!$R3 962
2 TraesCS7A01G057000 chr7A 112356971 112357914 943 False 1539.0 1539 95.8510 1901 2862 1 chr7A.!!$F1 961
3 TraesCS7A01G057000 chr7A 27358937 27360425 1488 True 708.0 1129 84.5835 339 1747 2 chr7A.!!$R4 1408
4 TraesCS7A01G057000 chrUn 357009723 357010672 949 True 1609.0 1609 97.0860 1902 2862 1 chrUn.!!$R1 960
5 TraesCS7A01G057000 chrUn 50303123 50303942 819 False 761.0 761 83.9950 927 1752 1 chrUn.!!$F1 825
6 TraesCS7A01G057000 chrUn 288173652 288174375 723 True 348.5 462 88.7365 679 1439 2 chrUn.!!$R2 760
7 TraesCS7A01G057000 chrUn 291709504 291710227 723 True 348.5 462 88.7365 679 1439 2 chrUn.!!$R3 760
8 TraesCS7A01G057000 chr3A 37206875 37207824 949 True 1609.0 1609 97.0860 1902 2862 1 chr3A.!!$R1 960
9 TraesCS7A01G057000 chr6B 679570672 679571613 941 False 1557.0 1557 96.2620 1902 2862 1 chr6B.!!$F2 960
10 TraesCS7A01G057000 chr6B 52387709 52388645 936 True 1543.0 1543 96.0460 1902 2862 1 chr6B.!!$R1 960
11 TraesCS7A01G057000 chr6B 552760356 552761167 811 True 1356.0 1356 96.9250 1902 2707 1 chr6B.!!$R2 805
12 TraesCS7A01G057000 chr4A 648581857 648582599 742 True 1297.0 1297 98.1230 1902 2646 1 chr4A.!!$R2 744
13 TraesCS7A01G057000 chr4A 726375892 726376821 929 True 887.0 887 84.1840 1902 2862 1 chr4A.!!$R3 960
14 TraesCS7A01G057000 chr4A 704526062 704527103 1041 False 567.5 765 87.1460 679 1752 2 chr4A.!!$F1 1073
15 TraesCS7A01G057000 chr4A 703461724 703462447 723 True 348.5 462 88.7365 679 1439 2 chr4A.!!$R4 760
16 TraesCS7A01G057000 chr7B 640169337 640170091 754 True 1247.0 1247 96.1340 1902 2677 1 chr7B.!!$R1 775
17 TraesCS7A01G057000 chr6A 560373120 560373793 673 True 1133.0 1133 96.7930 1902 2586 1 chr6A.!!$R1 684
18 TraesCS7A01G057000 chr3B 94453043 94453995 952 False 1002.0 1002 85.7730 1904 2862 1 chr3B.!!$F1 958
19 TraesCS7A01G057000 chr7D 27218889 27219754 865 True 900.0 900 85.5570 858 1752 1 chr7D.!!$R1 894
20 TraesCS7A01G057000 chr1B 25228616 25229563 947 False 898.0 898 84.1950 1902 2862 1 chr1B.!!$F1 960
21 TraesCS7A01G057000 chr1B 659665537 659666077 540 False 695.0 695 90.2930 2334 2862 1 chr1B.!!$F2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.031994 AGCGCCGCAAACTGATTTTT 59.968 45.0 13.36 0.0 0.0 1.94 F
171 172 0.095589 CGTGCCGCGCTGTATTTTAA 59.904 50.0 5.56 0.0 0.0 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 1316 0.250513 CCACTCAGTAACCAGCTCCC 59.749 60.0 0.00 0.0 0.0 4.30 R
1890 2073 0.322322 CCGGTAGTGTTTGTGGCCTA 59.678 55.0 3.32 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.981254 AGCGCATATGTTGTTTGTGC 58.019 45.000 11.47 0.00 44.94 4.57
23 24 3.469899 GCATATGTTGTTTGTGCGAGA 57.530 42.857 4.29 0.00 0.00 4.04
24 25 3.419915 GCATATGTTGTTTGTGCGAGAG 58.580 45.455 4.29 0.00 0.00 3.20
25 26 3.120199 GCATATGTTGTTTGTGCGAGAGT 60.120 43.478 4.29 0.00 0.00 3.24
26 27 4.397382 CATATGTTGTTTGTGCGAGAGTG 58.603 43.478 0.00 0.00 0.00 3.51
27 28 0.376852 TGTTGTTTGTGCGAGAGTGC 59.623 50.000 0.00 0.00 0.00 4.40
28 29 0.654472 GTTGTTTGTGCGAGAGTGCG 60.654 55.000 0.00 0.00 37.81 5.34
39 40 4.741781 GAGTGCGCGCGTTGCATT 62.742 61.111 32.35 22.96 46.97 3.56
40 41 4.326766 AGTGCGCGCGTTGCATTT 62.327 55.556 32.35 16.90 46.97 2.32
41 42 3.394062 GTGCGCGCGTTGCATTTT 61.394 55.556 32.35 0.00 46.97 1.82
42 43 2.077769 GTGCGCGCGTTGCATTTTA 61.078 52.632 32.35 0.47 46.97 1.52
43 44 1.795569 TGCGCGCGTTGCATTTTAG 60.796 52.632 32.35 0.00 46.97 1.85
44 45 2.979036 CGCGCGTTGCATTTTAGC 59.021 55.556 24.19 0.00 46.97 3.09
46 47 4.433102 CGCGTTGCATTTTAGCGT 57.567 50.000 0.00 0.00 44.96 5.07
47 48 1.972801 CGCGTTGCATTTTAGCGTG 59.027 52.632 0.00 3.19 44.96 5.34
48 49 1.696083 GCGTTGCATTTTAGCGTGC 59.304 52.632 0.00 0.00 41.61 5.34
49 50 1.673700 GCGTTGCATTTTAGCGTGCC 61.674 55.000 0.00 0.00 40.56 5.01
50 51 0.109781 CGTTGCATTTTAGCGTGCCT 60.110 50.000 0.00 0.00 40.56 4.75
51 52 1.339711 GTTGCATTTTAGCGTGCCTG 58.660 50.000 0.00 0.00 40.56 4.85
52 53 1.068610 GTTGCATTTTAGCGTGCCTGA 60.069 47.619 0.00 0.00 40.56 3.86
53 54 1.462616 TGCATTTTAGCGTGCCTGAT 58.537 45.000 0.00 0.00 40.56 2.90
54 55 1.132834 TGCATTTTAGCGTGCCTGATG 59.867 47.619 0.00 0.00 40.56 3.07
55 56 1.534595 GCATTTTAGCGTGCCTGATGG 60.535 52.381 0.00 0.00 35.35 3.51
56 57 2.016318 CATTTTAGCGTGCCTGATGGA 58.984 47.619 0.00 0.00 34.57 3.41
57 58 1.737838 TTTTAGCGTGCCTGATGGAG 58.262 50.000 0.00 0.00 34.57 3.86
58 59 0.744414 TTTAGCGTGCCTGATGGAGC 60.744 55.000 0.00 0.00 34.57 4.70
59 60 1.898330 TTAGCGTGCCTGATGGAGCA 61.898 55.000 0.00 0.00 36.44 4.26
60 61 1.898330 TAGCGTGCCTGATGGAGCAA 61.898 55.000 0.00 0.00 41.48 3.91
61 62 3.044059 GCGTGCCTGATGGAGCAAC 62.044 63.158 0.00 0.00 41.48 4.17
62 63 1.672030 CGTGCCTGATGGAGCAACA 60.672 57.895 0.00 0.00 41.48 3.33
63 64 1.878775 GTGCCTGATGGAGCAACAC 59.121 57.895 0.00 0.00 41.48 3.32
64 65 1.672030 TGCCTGATGGAGCAACACG 60.672 57.895 0.00 0.00 35.69 4.49
65 66 3.044059 GCCTGATGGAGCAACACGC 62.044 63.158 0.00 0.00 42.91 5.34
80 81 4.489683 CGCGCGCGCTAAATTTAT 57.510 50.000 45.97 0.00 39.32 1.40
81 82 2.316958 CGCGCGCGCTAAATTTATC 58.683 52.632 45.97 19.00 39.32 1.75
82 83 1.371238 CGCGCGCGCTAAATTTATCG 61.371 55.000 45.97 26.31 39.32 2.92
83 84 1.644226 GCGCGCGCTAAATTTATCGC 61.644 55.000 44.38 27.83 42.75 4.58
86 87 2.696290 GCGCTAAATTTATCGCGGC 58.304 52.632 25.11 16.13 45.17 6.53
87 88 0.724785 GCGCTAAATTTATCGCGGCC 60.725 55.000 25.11 10.74 45.17 6.13
88 89 0.450482 CGCTAAATTTATCGCGGCCG 60.450 55.000 24.05 24.05 41.72 6.13
89 90 0.724785 GCTAAATTTATCGCGGCCGC 60.725 55.000 39.82 39.82 37.85 6.53
90 91 0.865769 CTAAATTTATCGCGGCCGCT 59.134 50.000 43.60 30.70 39.32 5.52
91 92 0.584396 TAAATTTATCGCGGCCGCTG 59.416 50.000 43.60 35.25 39.32 5.18
92 93 2.058829 AAATTTATCGCGGCCGCTGG 62.059 55.000 43.60 30.97 39.32 4.85
93 94 2.933878 AATTTATCGCGGCCGCTGGA 62.934 55.000 43.60 34.79 39.32 3.86
94 95 4.585526 TTATCGCGGCCGCTGGAG 62.586 66.667 43.60 29.86 39.32 3.86
118 119 3.121030 CTCCTCGCCACGCCAAAG 61.121 66.667 0.00 0.00 0.00 2.77
121 122 4.093952 CTCGCCACGCCAAAGCAG 62.094 66.667 0.00 0.00 39.83 4.24
129 130 3.880846 GCCAAAGCAGGCGATCGG 61.881 66.667 18.30 0.83 46.12 4.18
130 131 2.125147 CCAAAGCAGGCGATCGGA 60.125 61.111 18.30 0.00 0.00 4.55
131 132 2.176273 CCAAAGCAGGCGATCGGAG 61.176 63.158 18.30 0.00 0.00 4.63
132 133 2.512515 AAAGCAGGCGATCGGAGC 60.513 61.111 18.30 0.00 0.00 4.70
133 134 4.880537 AAGCAGGCGATCGGAGCG 62.881 66.667 18.30 11.86 35.00 5.03
145 146 3.127533 GGAGCGCCGCAAACTGAT 61.128 61.111 13.36 0.00 0.00 2.90
146 147 2.690778 GGAGCGCCGCAAACTGATT 61.691 57.895 13.36 0.00 0.00 2.57
147 148 1.210155 GAGCGCCGCAAACTGATTT 59.790 52.632 13.36 0.00 0.00 2.17
148 149 0.387239 GAGCGCCGCAAACTGATTTT 60.387 50.000 13.36 0.00 0.00 1.82
149 150 0.031994 AGCGCCGCAAACTGATTTTT 59.968 45.000 13.36 0.00 0.00 1.94
150 151 1.268352 AGCGCCGCAAACTGATTTTTA 59.732 42.857 13.36 0.00 0.00 1.52
151 152 1.648681 GCGCCGCAAACTGATTTTTAG 59.351 47.619 3.15 0.00 0.00 1.85
152 153 1.648681 CGCCGCAAACTGATTTTTAGC 59.351 47.619 0.00 0.00 0.00 3.09
153 154 1.648681 GCCGCAAACTGATTTTTAGCG 59.351 47.619 0.00 0.00 36.56 4.26
154 155 2.920647 GCCGCAAACTGATTTTTAGCGT 60.921 45.455 0.00 0.00 35.80 5.07
155 156 2.656422 CCGCAAACTGATTTTTAGCGTG 59.344 45.455 0.00 0.00 35.80 5.34
156 157 2.088969 CGCAAACTGATTTTTAGCGTGC 59.911 45.455 0.00 0.00 34.34 5.34
157 158 2.408368 GCAAACTGATTTTTAGCGTGCC 59.592 45.455 0.00 0.00 0.00 5.01
158 159 2.611974 AACTGATTTTTAGCGTGCCG 57.388 45.000 0.00 0.00 0.00 5.69
169 170 2.478746 CGTGCCGCGCTGTATTTT 59.521 55.556 5.56 0.00 0.00 1.82
170 171 1.710919 CGTGCCGCGCTGTATTTTA 59.289 52.632 5.56 0.00 0.00 1.52
171 172 0.095589 CGTGCCGCGCTGTATTTTAA 59.904 50.000 5.56 0.00 0.00 1.52
172 173 1.530856 GTGCCGCGCTGTATTTTAAC 58.469 50.000 5.56 0.00 0.00 2.01
173 174 0.095589 TGCCGCGCTGTATTTTAACG 59.904 50.000 5.56 0.00 0.00 3.18
174 175 1.191823 GCCGCGCTGTATTTTAACGC 61.192 55.000 5.56 0.00 45.72 4.84
177 178 3.869866 CGCTGTATTTTAACGCGCT 57.130 47.368 5.73 0.00 36.31 5.92
178 179 2.153680 CGCTGTATTTTAACGCGCTT 57.846 45.000 5.73 2.14 36.31 4.68
179 180 1.831812 CGCTGTATTTTAACGCGCTTG 59.168 47.619 5.73 0.00 36.31 4.01
180 181 1.577578 GCTGTATTTTAACGCGCTTGC 59.422 47.619 5.73 0.00 0.00 4.01
181 182 2.727916 GCTGTATTTTAACGCGCTTGCT 60.728 45.455 5.73 0.00 36.08 3.91
182 183 2.840176 CTGTATTTTAACGCGCTTGCTG 59.160 45.455 5.73 0.00 36.08 4.41
183 184 2.173964 GTATTTTAACGCGCTTGCTGG 58.826 47.619 5.73 0.00 36.08 4.85
184 185 0.878416 ATTTTAACGCGCTTGCTGGA 59.122 45.000 5.73 0.00 36.08 3.86
185 186 0.237235 TTTTAACGCGCTTGCTGGAG 59.763 50.000 5.73 0.00 36.08 3.86
186 187 2.182614 TTTAACGCGCTTGCTGGAGC 62.183 55.000 5.73 0.00 42.50 4.70
202 203 2.698616 GCAATACGCGTGCGCTAA 59.301 55.556 24.59 0.00 44.19 3.09
203 204 1.059681 GCAATACGCGTGCGCTAAA 59.940 52.632 24.59 0.00 44.19 1.85
204 205 0.315869 GCAATACGCGTGCGCTAAAT 60.316 50.000 24.59 1.49 44.19 1.40
205 206 1.854434 GCAATACGCGTGCGCTAAATT 60.854 47.619 24.59 8.81 44.19 1.82
206 207 2.436670 CAATACGCGTGCGCTAAATTT 58.563 42.857 24.59 0.00 44.19 1.82
207 208 3.599338 CAATACGCGTGCGCTAAATTTA 58.401 40.909 24.59 0.00 44.19 1.40
208 209 4.208355 CAATACGCGTGCGCTAAATTTAT 58.792 39.130 24.59 0.00 44.19 1.40
209 210 2.817538 ACGCGTGCGCTAAATTTATT 57.182 40.000 12.93 0.00 44.19 1.40
210 211 2.436670 ACGCGTGCGCTAAATTTATTG 58.563 42.857 12.93 0.00 44.19 1.90
211 212 1.184908 CGCGTGCGCTAAATTTATTGC 59.815 47.619 9.73 12.49 39.32 3.56
216 217 1.394697 CGCTAAATTTATTGCGGCCG 58.605 50.000 24.05 24.05 43.97 6.13
217 218 1.268335 CGCTAAATTTATTGCGGCCGT 60.268 47.619 28.70 9.89 43.97 5.68
218 219 2.793237 CGCTAAATTTATTGCGGCCGTT 60.793 45.455 28.70 14.65 43.97 4.44
219 220 2.533942 GCTAAATTTATTGCGGCCGTTG 59.466 45.455 28.70 5.31 0.00 4.10
220 221 2.003196 AAATTTATTGCGGCCGTTGG 57.997 45.000 28.70 0.00 0.00 3.77
221 222 1.178276 AATTTATTGCGGCCGTTGGA 58.822 45.000 28.70 10.71 0.00 3.53
222 223 0.738389 ATTTATTGCGGCCGTTGGAG 59.262 50.000 28.70 0.00 0.00 3.86
223 224 1.928706 TTTATTGCGGCCGTTGGAGC 61.929 55.000 28.70 9.31 0.00 4.70
257 258 3.277133 GCCAAAGCAGGCGATCAA 58.723 55.556 0.00 0.00 46.12 2.57
258 259 1.138247 GCCAAAGCAGGCGATCAAG 59.862 57.895 0.00 0.00 46.12 3.02
259 260 1.308069 GCCAAAGCAGGCGATCAAGA 61.308 55.000 0.00 0.00 46.12 3.02
260 261 0.449388 CCAAAGCAGGCGATCAAGAC 59.551 55.000 0.00 0.00 0.00 3.01
261 262 0.095935 CAAAGCAGGCGATCAAGACG 59.904 55.000 0.00 0.00 0.00 4.18
269 270 3.280532 CGATCAAGACGCTGCAAAC 57.719 52.632 0.00 0.00 0.00 2.93
270 271 0.792640 CGATCAAGACGCTGCAAACT 59.207 50.000 0.00 0.00 0.00 2.66
271 272 1.463034 CGATCAAGACGCTGCAAACTG 60.463 52.381 0.00 0.00 0.00 3.16
272 273 1.800586 GATCAAGACGCTGCAAACTGA 59.199 47.619 0.00 0.00 0.00 3.41
273 274 1.882912 TCAAGACGCTGCAAACTGAT 58.117 45.000 0.00 0.00 0.00 2.90
274 275 2.221169 TCAAGACGCTGCAAACTGATT 58.779 42.857 0.00 0.00 0.00 2.57
275 276 2.618241 TCAAGACGCTGCAAACTGATTT 59.382 40.909 0.00 0.00 0.00 2.17
276 277 3.066621 TCAAGACGCTGCAAACTGATTTT 59.933 39.130 0.00 0.00 0.00 1.82
277 278 3.715628 AGACGCTGCAAACTGATTTTT 57.284 38.095 0.00 0.00 0.00 1.94
278 279 4.829064 AGACGCTGCAAACTGATTTTTA 57.171 36.364 0.00 0.00 0.00 1.52
279 280 5.181690 AGACGCTGCAAACTGATTTTTAA 57.818 34.783 0.00 0.00 0.00 1.52
280 281 4.976116 AGACGCTGCAAACTGATTTTTAAC 59.024 37.500 0.00 0.00 0.00 2.01
281 282 4.677584 ACGCTGCAAACTGATTTTTAACA 58.322 34.783 0.00 0.00 0.00 2.41
282 283 4.502645 ACGCTGCAAACTGATTTTTAACAC 59.497 37.500 0.00 0.00 0.00 3.32
283 284 4.373914 CGCTGCAAACTGATTTTTAACACG 60.374 41.667 0.00 0.00 0.00 4.49
284 285 4.606012 GCTGCAAACTGATTTTTAACACGC 60.606 41.667 0.00 0.00 0.00 5.34
285 286 3.799420 TGCAAACTGATTTTTAACACGCC 59.201 39.130 0.00 0.00 0.00 5.68
286 287 3.799420 GCAAACTGATTTTTAACACGCCA 59.201 39.130 0.00 0.00 0.00 5.69
287 288 4.317769 GCAAACTGATTTTTAACACGCCAC 60.318 41.667 0.00 0.00 0.00 5.01
288 289 3.262135 ACTGATTTTTAACACGCCACG 57.738 42.857 0.00 0.00 0.00 4.94
289 290 1.976045 CTGATTTTTAACACGCCACGC 59.024 47.619 0.00 0.00 0.00 5.34
305 306 3.053291 GCGTTGGGCGGTCATTGA 61.053 61.111 0.00 0.00 41.69 2.57
306 307 2.622011 GCGTTGGGCGGTCATTGAA 61.622 57.895 0.00 0.00 41.69 2.69
307 308 1.953017 CGTTGGGCGGTCATTGAAA 59.047 52.632 0.00 0.00 36.85 2.69
308 309 0.312416 CGTTGGGCGGTCATTGAAAA 59.688 50.000 0.00 0.00 36.85 2.29
309 310 1.067915 CGTTGGGCGGTCATTGAAAAT 60.068 47.619 0.00 0.00 36.85 1.82
310 311 2.336667 GTTGGGCGGTCATTGAAAATG 58.663 47.619 0.00 0.00 0.00 2.32
311 312 0.246086 TGGGCGGTCATTGAAAATGC 59.754 50.000 0.00 0.00 0.00 3.56
312 313 0.532115 GGGCGGTCATTGAAAATGCT 59.468 50.000 0.00 0.00 0.00 3.79
313 314 1.469767 GGGCGGTCATTGAAAATGCTC 60.470 52.381 0.00 0.00 0.00 4.26
314 315 1.474077 GGCGGTCATTGAAAATGCTCT 59.526 47.619 0.00 0.00 0.00 4.09
315 316 2.094545 GGCGGTCATTGAAAATGCTCTT 60.095 45.455 0.00 0.00 0.00 2.85
316 317 3.128589 GGCGGTCATTGAAAATGCTCTTA 59.871 43.478 0.00 0.00 0.00 2.10
317 318 4.098416 GCGGTCATTGAAAATGCTCTTAC 58.902 43.478 0.00 0.00 0.00 2.34
318 319 4.662145 CGGTCATTGAAAATGCTCTTACC 58.338 43.478 0.00 0.00 0.00 2.85
319 320 4.155826 CGGTCATTGAAAATGCTCTTACCA 59.844 41.667 7.93 0.00 0.00 3.25
320 321 5.644644 GGTCATTGAAAATGCTCTTACCAG 58.355 41.667 0.00 0.00 0.00 4.00
321 322 5.098211 GTCATTGAAAATGCTCTTACCAGC 58.902 41.667 0.00 0.00 40.13 4.85
336 337 1.901591 CCAGCATTGGTGAGTTGACT 58.098 50.000 17.13 0.00 39.79 3.41
337 338 2.233271 CCAGCATTGGTGAGTTGACTT 58.767 47.619 17.13 0.00 39.79 3.01
342 343 3.066621 GCATTGGTGAGTTGACTTGTCAA 59.933 43.478 11.62 11.62 0.00 3.18
359 360 3.518552 AACGTCCTCCTCCCCACGA 62.519 63.158 0.00 0.00 36.14 4.35
420 426 4.473520 CCACCTGTAGCCTGCCCG 62.474 72.222 0.00 0.00 0.00 6.13
440 446 1.213013 CTCCGTTCGTCCACCTCTG 59.787 63.158 0.00 0.00 0.00 3.35
443 449 1.524863 CCGTTCGTCCACCTCTGTCT 61.525 60.000 0.00 0.00 0.00 3.41
449 455 1.201181 CGTCCACCTCTGTCTTCTCTG 59.799 57.143 0.00 0.00 0.00 3.35
450 456 1.067213 GTCCACCTCTGTCTTCTCTGC 60.067 57.143 0.00 0.00 0.00 4.26
451 457 0.108898 CCACCTCTGTCTTCTCTGCG 60.109 60.000 0.00 0.00 0.00 5.18
452 458 0.884514 CACCTCTGTCTTCTCTGCGA 59.115 55.000 0.00 0.00 0.00 5.10
453 459 1.135431 CACCTCTGTCTTCTCTGCGAG 60.135 57.143 0.00 0.00 0.00 5.03
454 460 1.271652 ACCTCTGTCTTCTCTGCGAGA 60.272 52.381 4.47 4.47 36.86 4.04
455 461 1.401552 CCTCTGTCTTCTCTGCGAGAG 59.598 57.143 8.01 7.40 43.64 3.20
456 462 1.401552 CTCTGTCTTCTCTGCGAGAGG 59.598 57.143 11.63 10.86 42.54 3.69
457 463 0.179140 CTGTCTTCTCTGCGAGAGGC 60.179 60.000 11.63 8.34 42.54 4.70
458 464 1.140804 GTCTTCTCTGCGAGAGGCC 59.859 63.158 0.00 0.00 42.54 5.19
459 465 2.103934 CTTCTCTGCGAGAGGCCG 59.896 66.667 0.00 0.00 42.54 6.13
460 466 3.423162 CTTCTCTGCGAGAGGCCGG 62.423 68.421 0.00 0.00 42.54 6.13
508 514 1.446272 GCGTTCTCGGTTCTCCCTG 60.446 63.158 0.00 0.00 37.56 4.45
510 516 1.671742 GTTCTCGGTTCTCCCTGCA 59.328 57.895 0.00 0.00 0.00 4.41
539 549 4.228567 GCCGAGCTAGTGGGAGGC 62.229 72.222 0.00 0.00 37.61 4.70
559 569 1.729838 GTGTGAGTGAGACGGCGTC 60.730 63.158 31.33 31.33 0.00 5.19
641 654 3.956317 GGCGACGGCGTTTGGTTT 61.956 61.111 16.19 0.00 41.24 3.27
642 655 2.426261 GCGACGGCGTTTGGTTTC 60.426 61.111 16.19 0.00 40.36 2.78
644 657 2.587679 CGACGGCGTTTGGTTTCGA 61.588 57.895 16.19 0.00 0.00 3.71
645 658 1.864176 GACGGCGTTTGGTTTCGAT 59.136 52.632 16.19 0.00 0.00 3.59
749 832 1.593787 CTCAGTCATGGGCTCGTGT 59.406 57.895 5.52 0.00 0.00 4.49
752 835 1.913262 AGTCATGGGCTCGTGTGGA 60.913 57.895 5.52 0.00 0.00 4.02
754 837 1.913262 TCATGGGCTCGTGTGGACT 60.913 57.895 5.52 0.00 0.00 3.85
757 840 2.357517 GGGCTCGTGTGGACTGTG 60.358 66.667 0.00 0.00 0.00 3.66
758 841 2.357517 GGCTCGTGTGGACTGTGG 60.358 66.667 0.00 0.00 0.00 4.17
759 842 2.734591 GCTCGTGTGGACTGTGGA 59.265 61.111 0.00 0.00 0.00 4.02
760 843 1.373497 GCTCGTGTGGACTGTGGAG 60.373 63.158 0.00 0.00 0.00 3.86
761 844 2.041976 CTCGTGTGGACTGTGGAGT 58.958 57.895 0.00 0.00 33.98 3.85
762 845 0.319040 CTCGTGTGGACTGTGGAGTG 60.319 60.000 0.00 0.00 30.16 3.51
763 846 1.300931 CGTGTGGACTGTGGAGTGG 60.301 63.158 0.00 0.00 30.16 4.00
764 847 1.830145 GTGTGGACTGTGGAGTGGT 59.170 57.895 0.00 0.00 30.16 4.16
766 849 0.398522 TGTGGACTGTGGAGTGGTCT 60.399 55.000 0.00 0.00 30.16 3.85
797 884 6.460953 GGCCGATATTCAGGATTATCTCTCTC 60.461 46.154 0.00 0.00 0.00 3.20
798 885 6.321181 GCCGATATTCAGGATTATCTCTCTCT 59.679 42.308 8.65 0.00 0.00 3.10
812 944 0.614415 CTCTCTGTGGACTGGCCTCT 60.614 60.000 3.32 0.00 37.63 3.69
813 945 0.178921 TCTCTGTGGACTGGCCTCTT 60.179 55.000 3.32 0.00 37.63 2.85
816 948 1.461268 TGTGGACTGGCCTCTTCCA 60.461 57.895 14.51 14.51 37.07 3.53
1046 1194 1.427753 TCAGAGTCCAGTCACCACCTA 59.572 52.381 0.00 0.00 0.00 3.08
1110 1258 6.588204 TGTACAACTTCTCAACCACATAGTT 58.412 36.000 0.00 0.00 0.00 2.24
1153 1306 0.965439 ACTCGCTGCTCAGAGAAGTT 59.035 50.000 7.32 0.00 36.83 2.66
1163 1316 6.214191 TGCTCAGAGAAGTTCTAAGGTATG 57.786 41.667 5.09 0.00 33.83 2.39
1182 1335 0.250513 GGGAGCTGGTTACTGAGTGG 59.749 60.000 0.00 0.00 0.00 4.00
1211 1367 0.314302 ACACACTCCGGTCTTCTTCG 59.686 55.000 0.00 0.00 0.00 3.79
1212 1368 0.314302 CACACTCCGGTCTTCTTCGT 59.686 55.000 0.00 0.00 0.00 3.85
1215 1371 1.000607 CACTCCGGTCTTCTTCGTCAA 60.001 52.381 0.00 0.00 0.00 3.18
1262 1423 1.569030 ATGGCATGAGTCAGGTGGCT 61.569 55.000 18.02 4.75 38.99 4.75
1287 1448 4.954970 CACAGCTTGCCGGGGTGT 62.955 66.667 2.18 5.82 44.64 4.16
1299 1460 2.107546 GGGTGTACGCGTATGGGG 59.892 66.667 23.56 0.00 0.00 4.96
1327 1488 1.739466 GATGATCGTGGAAGCTGCAAA 59.261 47.619 1.02 0.00 0.00 3.68
1334 1495 1.265365 GTGGAAGCTGCAAAGACAGTC 59.735 52.381 1.02 0.00 39.96 3.51
1347 1508 0.966920 GACAGTCAGAAGGAACCGGA 59.033 55.000 9.46 0.00 0.00 5.14
1536 1703 3.981071 ACCTGTACAGCTGCTTTATGA 57.019 42.857 17.86 0.00 0.00 2.15
1538 1705 3.261897 ACCTGTACAGCTGCTTTATGAGT 59.738 43.478 17.86 2.40 0.00 3.41
1583 1750 0.529337 CGGTGCAGAATGAGATCGCT 60.529 55.000 0.00 0.00 39.69 4.93
1598 1765 1.267121 TCGCTTTCTACCTCCAGCTT 58.733 50.000 0.00 0.00 0.00 3.74
1599 1766 2.453521 TCGCTTTCTACCTCCAGCTTA 58.546 47.619 0.00 0.00 0.00 3.09
1604 1773 3.414759 TTCTACCTCCAGCTTATCCCA 57.585 47.619 0.00 0.00 0.00 4.37
1627 1796 1.127951 CGTTGGCTTTGTCGATACCAC 59.872 52.381 0.00 0.00 0.00 4.16
1637 1806 0.253894 TCGATACCACTCGGACCTGA 59.746 55.000 0.00 0.00 39.13 3.86
1641 1810 0.324368 TACCACTCGGACCTGAGCAT 60.324 55.000 11.70 2.98 39.68 3.79
1692 1875 6.090088 CGGTACAGATTCTTCTCACTTTTCTG 59.910 42.308 0.00 0.00 36.17 3.02
1695 1878 6.595682 ACAGATTCTTCTCACTTTTCTGGAA 58.404 36.000 0.00 0.00 34.78 3.53
1711 1894 1.066430 TGGAAGTGAATGGTACGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
1713 1896 2.354805 GGAAGTGAATGGTACGGCTCTT 60.355 50.000 0.00 0.00 0.00 2.85
1717 1900 2.544267 GTGAATGGTACGGCTCTTATGC 59.456 50.000 0.00 0.00 0.00 3.14
1724 1907 1.154205 ACGGCTCTTATGCGCATGAC 61.154 55.000 32.48 17.02 0.00 3.06
1734 1917 2.202388 CGCATGACTTTGCCAGCG 60.202 61.111 0.00 0.00 39.52 5.18
1752 1935 5.559035 GCCAGCGCAGATTTAGTTAGTTATG 60.559 44.000 11.47 0.00 34.03 1.90
1753 1936 5.753438 CCAGCGCAGATTTAGTTAGTTATGA 59.247 40.000 11.47 0.00 0.00 2.15
1754 1937 6.257849 CCAGCGCAGATTTAGTTAGTTATGAA 59.742 38.462 11.47 0.00 0.00 2.57
1755 1938 7.119997 CAGCGCAGATTTAGTTAGTTATGAAC 58.880 38.462 11.47 0.00 0.00 3.18
1756 1939 6.816640 AGCGCAGATTTAGTTAGTTATGAACA 59.183 34.615 11.47 0.00 0.00 3.18
1757 1940 6.900299 GCGCAGATTTAGTTAGTTATGAACAC 59.100 38.462 0.30 0.00 0.00 3.32
1758 1941 7.201530 GCGCAGATTTAGTTAGTTATGAACACT 60.202 37.037 0.30 0.00 0.00 3.55
1759 1942 8.656849 CGCAGATTTAGTTAGTTATGAACACTT 58.343 33.333 0.00 0.00 0.00 3.16
1804 1987 5.467902 GAACTCAGTTCTCAAGATCATGC 57.532 43.478 10.55 0.00 39.23 4.06
1805 1988 4.822685 ACTCAGTTCTCAAGATCATGCT 57.177 40.909 0.00 0.00 0.00 3.79
1806 1989 4.505808 ACTCAGTTCTCAAGATCATGCTG 58.494 43.478 0.00 0.00 0.00 4.41
1807 1990 3.268330 TCAGTTCTCAAGATCATGCTGC 58.732 45.455 0.00 0.00 0.00 5.25
1808 1991 3.007635 CAGTTCTCAAGATCATGCTGCA 58.992 45.455 4.13 4.13 0.00 4.41
1809 1992 3.628032 CAGTTCTCAAGATCATGCTGCAT 59.372 43.478 9.81 9.81 0.00 3.96
1810 1993 3.878103 AGTTCTCAAGATCATGCTGCATC 59.122 43.478 13.10 2.55 0.00 3.91
1811 1994 3.840124 TCTCAAGATCATGCTGCATCT 57.160 42.857 13.10 5.20 0.00 2.90
1812 1995 3.467803 TCTCAAGATCATGCTGCATCTG 58.532 45.455 13.10 4.35 29.40 2.90
1813 1996 3.134081 TCTCAAGATCATGCTGCATCTGA 59.866 43.478 13.10 10.38 29.40 3.27
1814 1997 3.877508 CTCAAGATCATGCTGCATCTGAA 59.122 43.478 13.10 0.00 29.40 3.02
1815 1998 3.626217 TCAAGATCATGCTGCATCTGAAC 59.374 43.478 13.10 8.68 29.40 3.18
1816 1999 3.562343 AGATCATGCTGCATCTGAACT 57.438 42.857 13.10 10.88 0.00 3.01
1817 2000 3.468770 AGATCATGCTGCATCTGAACTC 58.531 45.455 13.10 5.55 0.00 3.01
1818 2001 2.773993 TCATGCTGCATCTGAACTCA 57.226 45.000 13.10 0.00 0.00 3.41
1819 2002 3.062122 TCATGCTGCATCTGAACTCAA 57.938 42.857 13.10 0.00 0.00 3.02
1820 2003 3.007635 TCATGCTGCATCTGAACTCAAG 58.992 45.455 13.10 0.00 0.00 3.02
1821 2004 2.845363 TGCTGCATCTGAACTCAAGA 57.155 45.000 0.00 0.00 0.00 3.02
1822 2005 2.696506 TGCTGCATCTGAACTCAAGAG 58.303 47.619 0.00 0.00 0.00 2.85
1823 2006 2.301009 TGCTGCATCTGAACTCAAGAGA 59.699 45.455 0.00 0.00 0.00 3.10
1824 2007 3.055312 TGCTGCATCTGAACTCAAGAGAT 60.055 43.478 0.00 0.00 0.00 2.75
1825 2008 3.310227 GCTGCATCTGAACTCAAGAGATG 59.690 47.826 3.73 0.00 44.01 2.90
1831 2014 7.179927 CATCTGAACTCAAGAGATGCTAATG 57.820 40.000 3.73 0.00 37.40 1.90
1832 2015 6.535963 TCTGAACTCAAGAGATGCTAATGA 57.464 37.500 3.73 0.00 0.00 2.57
1833 2016 6.939622 TCTGAACTCAAGAGATGCTAATGAA 58.060 36.000 3.73 0.00 0.00 2.57
1834 2017 7.389232 TCTGAACTCAAGAGATGCTAATGAAA 58.611 34.615 3.73 0.00 0.00 2.69
1835 2018 8.045507 TCTGAACTCAAGAGATGCTAATGAAAT 58.954 33.333 3.73 0.00 0.00 2.17
1836 2019 8.206325 TGAACTCAAGAGATGCTAATGAAATC 57.794 34.615 3.73 0.00 0.00 2.17
1837 2020 8.045507 TGAACTCAAGAGATGCTAATGAAATCT 58.954 33.333 3.73 0.00 33.36 2.40
1838 2021 8.804912 AACTCAAGAGATGCTAATGAAATCTT 57.195 30.769 3.73 0.00 30.83 2.40
1839 2022 8.436046 ACTCAAGAGATGCTAATGAAATCTTC 57.564 34.615 3.73 0.00 30.83 2.87
1840 2023 8.266473 ACTCAAGAGATGCTAATGAAATCTTCT 58.734 33.333 3.73 0.00 30.83 2.85
1841 2024 9.761504 CTCAAGAGATGCTAATGAAATCTTCTA 57.238 33.333 0.00 0.00 30.83 2.10
1893 2076 6.769134 ACGGGACAAAATTAGGAAAATAGG 57.231 37.500 0.00 0.00 0.00 2.57
1894 2077 5.126545 ACGGGACAAAATTAGGAAAATAGGC 59.873 40.000 0.00 0.00 0.00 3.93
1895 2078 5.451381 CGGGACAAAATTAGGAAAATAGGCC 60.451 44.000 0.00 0.00 0.00 5.19
1896 2079 5.423931 GGGACAAAATTAGGAAAATAGGCCA 59.576 40.000 5.01 0.00 0.00 5.36
1897 2080 6.338146 GGACAAAATTAGGAAAATAGGCCAC 58.662 40.000 5.01 0.00 0.00 5.01
1898 2081 6.071051 GGACAAAATTAGGAAAATAGGCCACA 60.071 38.462 5.01 0.00 0.00 4.17
2838 3102 1.608336 CCGGGTGTAGAGGTCCACA 60.608 63.158 0.00 0.00 33.19 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.981254 GCACAAACAACATATGCGCT 58.019 45.000 9.73 0.00 0.00 5.92
3 4 3.120199 ACTCTCGCACAAACAACATATGC 60.120 43.478 1.58 0.00 0.00 3.14
4 5 4.397382 CACTCTCGCACAAACAACATATG 58.603 43.478 0.00 0.00 0.00 1.78
5 6 3.120199 GCACTCTCGCACAAACAACATAT 60.120 43.478 0.00 0.00 0.00 1.78
7 8 1.002468 GCACTCTCGCACAAACAACAT 60.002 47.619 0.00 0.00 0.00 2.71
8 9 0.376852 GCACTCTCGCACAAACAACA 59.623 50.000 0.00 0.00 0.00 3.33
9 10 0.654472 CGCACTCTCGCACAAACAAC 60.654 55.000 0.00 0.00 0.00 3.32
10 11 1.641140 CGCACTCTCGCACAAACAA 59.359 52.632 0.00 0.00 0.00 2.83
11 12 3.318875 CGCACTCTCGCACAAACA 58.681 55.556 0.00 0.00 0.00 2.83
22 23 4.741781 AATGCAACGCGCGCACTC 62.742 61.111 32.58 17.02 46.97 3.51
23 24 2.450960 TAAAATGCAACGCGCGCACT 62.451 50.000 32.58 14.67 46.97 4.40
24 25 1.986521 CTAAAATGCAACGCGCGCAC 61.987 55.000 32.58 20.08 46.97 5.34
25 26 1.795569 CTAAAATGCAACGCGCGCA 60.796 52.632 32.58 23.74 46.97 6.09
26 27 2.979036 CTAAAATGCAACGCGCGC 59.021 55.556 32.58 23.91 46.97 6.86
27 28 2.823894 CGCTAAAATGCAACGCGCG 61.824 57.895 30.96 30.96 46.97 6.86
28 29 1.795962 ACGCTAAAATGCAACGCGC 60.796 52.632 5.73 0.00 46.91 6.86
30 31 1.673700 GGCACGCTAAAATGCAACGC 61.674 55.000 0.00 0.00 43.93 4.84
31 32 0.109781 AGGCACGCTAAAATGCAACG 60.110 50.000 0.00 0.00 43.93 4.10
32 33 1.068610 TCAGGCACGCTAAAATGCAAC 60.069 47.619 0.00 0.00 43.93 4.17
33 34 1.242989 TCAGGCACGCTAAAATGCAA 58.757 45.000 0.00 0.00 43.93 4.08
34 35 1.132834 CATCAGGCACGCTAAAATGCA 59.867 47.619 0.00 0.00 43.93 3.96
35 36 1.534595 CCATCAGGCACGCTAAAATGC 60.535 52.381 0.00 0.00 41.29 3.56
36 37 2.016318 TCCATCAGGCACGCTAAAATG 58.984 47.619 0.00 0.00 33.74 2.32
37 38 2.292267 CTCCATCAGGCACGCTAAAAT 58.708 47.619 0.00 0.00 33.74 1.82
38 39 1.737838 CTCCATCAGGCACGCTAAAA 58.262 50.000 0.00 0.00 33.74 1.52
39 40 0.744414 GCTCCATCAGGCACGCTAAA 60.744 55.000 0.00 0.00 33.74 1.85
40 41 1.153369 GCTCCATCAGGCACGCTAA 60.153 57.895 0.00 0.00 33.74 3.09
41 42 1.898330 TTGCTCCATCAGGCACGCTA 61.898 55.000 0.00 0.00 38.23 4.26
42 43 3.258228 TTGCTCCATCAGGCACGCT 62.258 57.895 0.00 0.00 38.23 5.07
43 44 2.747460 TTGCTCCATCAGGCACGC 60.747 61.111 0.00 0.00 38.23 5.34
44 45 1.672030 TGTTGCTCCATCAGGCACG 60.672 57.895 0.00 0.00 38.23 5.34
45 46 1.878775 GTGTTGCTCCATCAGGCAC 59.121 57.895 0.00 0.00 38.23 5.01
46 47 1.672030 CGTGTTGCTCCATCAGGCA 60.672 57.895 0.00 0.00 36.62 4.75
47 48 3.044059 GCGTGTTGCTCCATCAGGC 62.044 63.158 5.55 5.55 41.73 4.85
48 49 2.743752 CGCGTGTTGCTCCATCAGG 61.744 63.158 0.00 0.00 43.27 3.86
49 50 2.780643 CGCGTGTTGCTCCATCAG 59.219 61.111 0.00 0.00 43.27 2.90
50 51 3.422303 GCGCGTGTTGCTCCATCA 61.422 61.111 8.43 0.00 43.27 3.07
51 52 4.505217 CGCGCGTGTTGCTCCATC 62.505 66.667 24.19 0.00 43.27 3.51
64 65 2.316958 CGATAAATTTAGCGCGCGC 58.683 52.632 45.10 45.10 35.71 6.86
70 71 0.724785 GCGGCCGCGATAAATTTAGC 60.725 55.000 37.24 4.16 0.00 3.09
71 72 3.361443 GCGGCCGCGATAAATTTAG 57.639 52.632 37.24 0.00 0.00 1.85
101 102 3.121030 CTTTGGCGTGGCGAGGAG 61.121 66.667 0.00 0.00 0.00 3.69
104 105 4.093952 CTGCTTTGGCGTGGCGAG 62.094 66.667 0.00 0.00 42.25 5.03
113 114 2.125147 TCCGATCGCCTGCTTTGG 60.125 61.111 10.32 0.00 0.00 3.28
114 115 2.817423 GCTCCGATCGCCTGCTTTG 61.817 63.158 10.32 0.00 0.00 2.77
115 116 2.512515 GCTCCGATCGCCTGCTTT 60.513 61.111 10.32 0.00 0.00 3.51
116 117 4.880537 CGCTCCGATCGCCTGCTT 62.881 66.667 10.32 0.00 0.00 3.91
128 129 2.200170 AAATCAGTTTGCGGCGCTCC 62.200 55.000 33.26 19.47 0.00 4.70
129 130 0.387239 AAAATCAGTTTGCGGCGCTC 60.387 50.000 33.26 21.59 0.00 5.03
130 131 0.031994 AAAAATCAGTTTGCGGCGCT 59.968 45.000 33.26 9.91 0.00 5.92
131 132 1.648681 CTAAAAATCAGTTTGCGGCGC 59.351 47.619 27.44 27.44 0.00 6.53
132 133 1.648681 GCTAAAAATCAGTTTGCGGCG 59.351 47.619 0.51 0.51 0.00 6.46
133 134 1.648681 CGCTAAAAATCAGTTTGCGGC 59.351 47.619 5.32 0.00 35.89 6.53
134 135 2.656422 CACGCTAAAAATCAGTTTGCGG 59.344 45.455 15.16 3.56 39.79 5.69
135 136 2.088969 GCACGCTAAAAATCAGTTTGCG 59.911 45.455 10.53 10.53 40.53 4.85
136 137 2.408368 GGCACGCTAAAAATCAGTTTGC 59.592 45.455 0.00 0.00 0.00 3.68
153 154 1.530856 GTTAAAATACAGCGCGGCAC 58.469 50.000 8.83 0.00 0.00 5.01
154 155 0.095589 CGTTAAAATACAGCGCGGCA 59.904 50.000 8.83 0.00 0.00 5.69
155 156 1.191823 GCGTTAAAATACAGCGCGGC 61.192 55.000 8.83 0.00 38.75 6.53
156 157 2.836511 GCGTTAAAATACAGCGCGG 58.163 52.632 8.83 5.83 38.75 6.46
160 161 1.577578 GCAAGCGCGTTAAAATACAGC 59.422 47.619 8.43 0.00 0.00 4.40
161 162 2.840176 CAGCAAGCGCGTTAAAATACAG 59.160 45.455 8.43 0.00 45.49 2.74
162 163 2.413502 CCAGCAAGCGCGTTAAAATACA 60.414 45.455 8.43 0.00 45.49 2.29
163 164 2.159626 TCCAGCAAGCGCGTTAAAATAC 60.160 45.455 8.43 0.00 45.49 1.89
164 165 2.077627 TCCAGCAAGCGCGTTAAAATA 58.922 42.857 8.43 0.00 45.49 1.40
165 166 0.878416 TCCAGCAAGCGCGTTAAAAT 59.122 45.000 8.43 0.00 45.49 1.82
166 167 0.237235 CTCCAGCAAGCGCGTTAAAA 59.763 50.000 8.43 0.00 45.49 1.52
167 168 1.866237 CTCCAGCAAGCGCGTTAAA 59.134 52.632 8.43 0.00 45.49 1.52
168 169 2.677003 GCTCCAGCAAGCGCGTTAA 61.677 57.895 8.43 0.00 45.49 2.01
169 170 3.118454 GCTCCAGCAAGCGCGTTA 61.118 61.111 8.43 0.00 45.49 3.18
179 180 2.703409 CACGCGTATTGCTCCAGC 59.297 61.111 13.44 0.00 43.27 4.85
180 181 2.703409 GCACGCGTATTGCTCCAG 59.297 61.111 13.44 0.00 43.27 3.86
181 182 3.185365 CGCACGCGTATTGCTCCA 61.185 61.111 13.44 0.00 43.27 3.86
182 183 4.575245 GCGCACGCGTATTGCTCC 62.575 66.667 13.44 1.57 43.27 4.70
192 193 1.184908 CGCAATAAATTTAGCGCACGC 59.815 47.619 11.47 6.99 43.80 5.34
198 199 2.485266 ACGGCCGCAATAAATTTAGC 57.515 45.000 28.58 2.03 0.00 3.09
199 200 3.112580 CCAACGGCCGCAATAAATTTAG 58.887 45.455 28.58 0.00 0.00 1.85
200 201 2.753452 TCCAACGGCCGCAATAAATTTA 59.247 40.909 28.58 0.00 0.00 1.40
201 202 1.546476 TCCAACGGCCGCAATAAATTT 59.454 42.857 28.58 6.25 0.00 1.82
202 203 1.134175 CTCCAACGGCCGCAATAAATT 59.866 47.619 28.58 7.15 0.00 1.82
203 204 0.738389 CTCCAACGGCCGCAATAAAT 59.262 50.000 28.58 0.00 0.00 1.40
204 205 1.928706 GCTCCAACGGCCGCAATAAA 61.929 55.000 28.58 5.11 0.00 1.40
205 206 2.403378 GCTCCAACGGCCGCAATAA 61.403 57.895 28.58 6.34 0.00 1.40
206 207 2.822255 GCTCCAACGGCCGCAATA 60.822 61.111 28.58 7.98 0.00 1.90
241 242 0.449388 GTCTTGATCGCCTGCTTTGG 59.551 55.000 0.00 0.00 0.00 3.28
242 243 0.095935 CGTCTTGATCGCCTGCTTTG 59.904 55.000 0.00 0.00 0.00 2.77
243 244 1.639298 GCGTCTTGATCGCCTGCTTT 61.639 55.000 0.00 0.00 46.61 3.51
244 245 2.103042 GCGTCTTGATCGCCTGCTT 61.103 57.895 0.00 0.00 46.61 3.91
245 246 2.510238 GCGTCTTGATCGCCTGCT 60.510 61.111 0.00 0.00 46.61 4.24
251 252 0.792640 AGTTTGCAGCGTCTTGATCG 59.207 50.000 0.00 0.00 0.00 3.69
252 253 1.800586 TCAGTTTGCAGCGTCTTGATC 59.199 47.619 0.00 0.00 0.00 2.92
253 254 1.882912 TCAGTTTGCAGCGTCTTGAT 58.117 45.000 0.00 0.00 0.00 2.57
254 255 1.882912 ATCAGTTTGCAGCGTCTTGA 58.117 45.000 0.00 0.00 0.00 3.02
255 256 2.693797 AATCAGTTTGCAGCGTCTTG 57.306 45.000 0.00 0.00 0.00 3.02
256 257 3.715628 AAAATCAGTTTGCAGCGTCTT 57.284 38.095 0.00 0.00 0.00 3.01
257 258 3.715628 AAAAATCAGTTTGCAGCGTCT 57.284 38.095 0.00 0.00 0.00 4.18
258 259 4.737765 TGTTAAAAATCAGTTTGCAGCGTC 59.262 37.500 0.00 0.00 0.00 5.19
259 260 4.502645 GTGTTAAAAATCAGTTTGCAGCGT 59.497 37.500 0.00 0.00 0.00 5.07
260 261 4.373914 CGTGTTAAAAATCAGTTTGCAGCG 60.374 41.667 0.00 0.00 0.00 5.18
261 262 4.606012 GCGTGTTAAAAATCAGTTTGCAGC 60.606 41.667 0.00 0.00 0.00 5.25
262 263 4.085107 GGCGTGTTAAAAATCAGTTTGCAG 60.085 41.667 0.00 0.00 0.00 4.41
263 264 3.799420 GGCGTGTTAAAAATCAGTTTGCA 59.201 39.130 0.00 0.00 0.00 4.08
264 265 3.799420 TGGCGTGTTAAAAATCAGTTTGC 59.201 39.130 0.00 0.00 0.00 3.68
265 266 4.085822 CGTGGCGTGTTAAAAATCAGTTTG 60.086 41.667 0.00 0.00 0.00 2.93
266 267 4.039032 CGTGGCGTGTTAAAAATCAGTTT 58.961 39.130 0.00 0.00 0.00 2.66
267 268 3.623863 CGTGGCGTGTTAAAAATCAGTT 58.376 40.909 0.00 0.00 0.00 3.16
268 269 2.603652 GCGTGGCGTGTTAAAAATCAGT 60.604 45.455 0.00 0.00 0.00 3.41
269 270 1.976045 GCGTGGCGTGTTAAAAATCAG 59.024 47.619 0.00 0.00 0.00 2.90
270 271 2.039327 GCGTGGCGTGTTAAAAATCA 57.961 45.000 0.00 0.00 0.00 2.57
288 289 2.136196 TTTCAATGACCGCCCAACGC 62.136 55.000 0.00 0.00 41.76 4.84
289 290 0.312416 TTTTCAATGACCGCCCAACG 59.688 50.000 0.00 0.00 43.15 4.10
290 291 2.336667 CATTTTCAATGACCGCCCAAC 58.663 47.619 0.00 0.00 0.00 3.77
291 292 1.337635 GCATTTTCAATGACCGCCCAA 60.338 47.619 0.49 0.00 0.00 4.12
292 293 0.246086 GCATTTTCAATGACCGCCCA 59.754 50.000 0.49 0.00 0.00 5.36
293 294 0.532115 AGCATTTTCAATGACCGCCC 59.468 50.000 0.49 0.00 0.00 6.13
294 295 1.474077 AGAGCATTTTCAATGACCGCC 59.526 47.619 0.49 0.00 0.00 6.13
295 296 2.927553 AGAGCATTTTCAATGACCGC 57.072 45.000 0.49 0.00 0.00 5.68
296 297 4.155826 TGGTAAGAGCATTTTCAATGACCG 59.844 41.667 0.49 0.00 0.00 4.79
297 298 5.643379 TGGTAAGAGCATTTTCAATGACC 57.357 39.130 0.49 0.04 0.00 4.02
298 299 5.098211 GCTGGTAAGAGCATTTTCAATGAC 58.902 41.667 0.49 0.00 38.95 3.06
299 300 4.766373 TGCTGGTAAGAGCATTTTCAATGA 59.234 37.500 0.49 0.00 44.16 2.57
300 301 5.063180 TGCTGGTAAGAGCATTTTCAATG 57.937 39.130 0.00 0.00 44.16 2.82
318 319 2.620115 ACAAGTCAACTCACCAATGCTG 59.380 45.455 0.00 0.00 0.00 4.41
319 320 2.880890 GACAAGTCAACTCACCAATGCT 59.119 45.455 0.00 0.00 0.00 3.79
320 321 2.618241 TGACAAGTCAACTCACCAATGC 59.382 45.455 0.00 0.00 36.53 3.56
321 322 4.898829 TTGACAAGTCAACTCACCAATG 57.101 40.909 11.34 0.00 43.90 2.82
331 332 1.760613 AGGAGGACGTTGACAAGTCAA 59.239 47.619 11.34 11.34 46.27 3.18
332 333 1.340248 GAGGAGGACGTTGACAAGTCA 59.660 52.381 15.21 0.00 39.01 3.41
333 334 1.336980 GGAGGAGGACGTTGACAAGTC 60.337 57.143 0.00 8.44 36.70 3.01
334 335 0.680061 GGAGGAGGACGTTGACAAGT 59.320 55.000 0.00 0.00 0.00 3.16
335 336 0.037232 GGGAGGAGGACGTTGACAAG 60.037 60.000 0.00 0.00 0.00 3.16
336 337 1.477685 GGGGAGGAGGACGTTGACAA 61.478 60.000 0.00 0.00 0.00 3.18
337 338 1.911766 GGGGAGGAGGACGTTGACA 60.912 63.158 0.00 0.00 0.00 3.58
342 343 3.975591 TCGTGGGGAGGAGGACGT 61.976 66.667 0.00 0.00 33.56 4.34
359 360 2.356780 GGGAGGATTCGACCGTGGT 61.357 63.158 0.00 0.00 34.73 4.16
370 371 3.090219 GCGGCGTTGTAGGGAGGAT 62.090 63.158 9.37 0.00 0.00 3.24
399 405 4.473520 CAGGCTACAGGTGGCGGG 62.474 72.222 1.62 0.00 38.00 6.13
420 426 1.212229 GAGGTGGACGAACGGAGAC 59.788 63.158 0.00 0.00 0.00 3.36
428 434 1.074084 AGAGAAGACAGAGGTGGACGA 59.926 52.381 0.00 0.00 0.00 4.20
488 494 2.257676 GGAGAACCGAGAACGCGT 59.742 61.111 5.58 5.58 38.29 6.01
519 525 2.361992 TCCCACTAGCTCGGCGAA 60.362 61.111 12.13 0.00 0.00 4.70
525 531 2.760385 ACCGCCTCCCACTAGCTC 60.760 66.667 0.00 0.00 0.00 4.09
539 549 2.430921 GCCGTCTCACTCACACCG 60.431 66.667 0.00 0.00 0.00 4.94
559 569 1.151777 ACTGTTCTGCCACGAACACG 61.152 55.000 8.65 8.09 45.92 4.49
568 578 2.358737 CCCGACCACTGTTCTGCC 60.359 66.667 0.00 0.00 0.00 4.85
576 586 3.374402 CACGAGCTCCCGACCACT 61.374 66.667 8.47 0.00 0.00 4.00
577 587 4.436998 CCACGAGCTCCCGACCAC 62.437 72.222 8.47 0.00 0.00 4.16
624 634 3.867226 GAAACCAAACGCCGTCGCC 62.867 63.158 0.00 0.00 39.84 5.54
642 655 3.114616 GGCATCCATCGCCGATCG 61.115 66.667 8.51 8.51 40.35 3.69
749 832 2.746697 GAGACCACTCCACAGTCCA 58.253 57.895 0.00 0.00 37.19 4.02
763 846 3.222354 AATATCGGCCGGCGGAGAC 62.222 63.158 35.42 17.81 0.00 3.36
764 847 2.915659 AATATCGGCCGGCGGAGA 60.916 61.111 35.42 32.77 0.00 3.71
766 849 3.220999 CTGAATATCGGCCGGCGGA 62.221 63.158 34.99 34.99 0.00 5.54
768 851 2.507110 ATCCTGAATATCGGCCGGCG 62.507 60.000 27.83 16.23 0.00 6.46
769 852 0.321653 AATCCTGAATATCGGCCGGC 60.322 55.000 27.83 21.18 0.00 6.13
770 853 3.133003 AGATAATCCTGAATATCGGCCGG 59.867 47.826 27.83 6.84 34.45 6.13
771 854 4.098654 AGAGATAATCCTGAATATCGGCCG 59.901 45.833 22.12 22.12 34.45 6.13
772 855 5.362430 AGAGAGATAATCCTGAATATCGGCC 59.638 44.000 0.00 0.00 34.45 6.13
775 858 8.183536 CACAGAGAGAGATAATCCTGAATATCG 58.816 40.741 0.00 0.00 34.45 2.92
779 862 6.267471 GTCCACAGAGAGAGATAATCCTGAAT 59.733 42.308 0.00 0.00 0.00 2.57
797 884 1.298014 GGAAGAGGCCAGTCCACAG 59.702 63.158 5.01 0.00 37.29 3.66
798 885 1.461268 TGGAAGAGGCCAGTCCACA 60.461 57.895 15.95 0.43 36.51 4.17
830 962 1.665735 CCTGCGGAATTTCCACAAACG 60.666 52.381 15.58 1.65 35.91 3.60
1046 1194 1.786937 TGGCCACATCCAAACTGTTT 58.213 45.000 0.00 0.00 32.18 2.83
1153 1306 2.868964 ACCAGCTCCCATACCTTAGA 57.131 50.000 0.00 0.00 0.00 2.10
1163 1316 0.250513 CCACTCAGTAACCAGCTCCC 59.749 60.000 0.00 0.00 0.00 4.30
1211 1367 6.620303 GCATCATCTTCTCTCAGTTTGTTGAC 60.620 42.308 0.00 0.00 0.00 3.18
1212 1368 5.410746 GCATCATCTTCTCTCAGTTTGTTGA 59.589 40.000 0.00 0.00 0.00 3.18
1215 1371 5.046448 AGAGCATCATCTTCTCTCAGTTTGT 60.046 40.000 0.00 0.00 37.82 2.83
1271 1432 3.246112 TACACCCCGGCAAGCTGT 61.246 61.111 0.00 0.00 0.00 4.40
1280 1441 2.278989 CCATACGCGTACACCCCG 60.279 66.667 23.19 5.93 0.00 5.73
1287 1448 0.386476 GTGATGACCCCATACGCGTA 59.614 55.000 22.94 22.94 32.09 4.42
1319 1480 2.492012 CTTCTGACTGTCTTTGCAGCT 58.508 47.619 9.51 0.00 39.96 4.24
1327 1488 0.969894 CCGGTTCCTTCTGACTGTCT 59.030 55.000 9.51 0.00 0.00 3.41
1334 1495 1.880027 CAGGTTTTCCGGTTCCTTCTG 59.120 52.381 0.00 0.18 46.35 3.02
1347 1508 2.205152 CCAGCAGCTGGCAGGTTTT 61.205 57.895 28.85 5.11 45.13 2.43
1372 1533 4.916041 AGGTCTCCAATCATCTTCACAA 57.084 40.909 0.00 0.00 0.00 3.33
1536 1703 1.073897 GGTCAGCTTGCTTCCCACT 59.926 57.895 0.00 0.00 0.00 4.00
1538 1705 1.073722 CTGGTCAGCTTGCTTCCCA 59.926 57.895 8.96 8.96 0.00 4.37
1564 1731 0.529337 AGCGATCTCATTCTGCACCG 60.529 55.000 0.00 0.00 0.00 4.94
1583 1750 3.454812 GTGGGATAAGCTGGAGGTAGAAA 59.545 47.826 0.00 0.00 0.00 2.52
1604 1773 2.334838 GTATCGACAAAGCCAACGAGT 58.665 47.619 0.00 0.00 38.12 4.18
1627 1796 0.392193 AAGCAATGCTCAGGTCCGAG 60.392 55.000 8.71 6.42 38.25 4.63
1692 1875 1.207329 AGAGCCGTACCATTCACTTCC 59.793 52.381 0.00 0.00 0.00 3.46
1695 1878 3.741388 GCATAAGAGCCGTACCATTCACT 60.741 47.826 0.00 0.00 0.00 3.41
1780 1963 8.484453 CAGCATGATCTTGAGAACTGAGTTCTT 61.484 40.741 26.79 12.30 46.06 2.52
1782 1965 5.063691 CAGCATGATCTTGAGAACTGAGTTC 59.936 44.000 17.22 17.22 39.86 3.01
1783 1966 4.936411 CAGCATGATCTTGAGAACTGAGTT 59.064 41.667 12.54 0.00 39.69 3.01
1784 1967 4.505808 CAGCATGATCTTGAGAACTGAGT 58.494 43.478 12.54 0.00 39.69 3.41
1785 1968 3.310227 GCAGCATGATCTTGAGAACTGAG 59.690 47.826 12.54 0.00 39.69 3.35
1786 1969 3.268330 GCAGCATGATCTTGAGAACTGA 58.732 45.455 12.54 0.00 39.69 3.41
1787 1970 3.007635 TGCAGCATGATCTTGAGAACTG 58.992 45.455 12.54 10.23 39.69 3.16
1788 1971 3.345508 TGCAGCATGATCTTGAGAACT 57.654 42.857 12.54 0.00 39.69 3.01
1789 1972 3.878103 AGATGCAGCATGATCTTGAGAAC 59.122 43.478 14.22 0.00 39.69 3.01
1790 1973 3.877508 CAGATGCAGCATGATCTTGAGAA 59.122 43.478 14.22 0.00 39.69 2.87
1791 1974 3.134081 TCAGATGCAGCATGATCTTGAGA 59.866 43.478 14.22 0.00 39.69 3.27
1792 1975 3.467803 TCAGATGCAGCATGATCTTGAG 58.532 45.455 14.22 5.19 39.69 3.02
1793 1976 3.553828 TCAGATGCAGCATGATCTTGA 57.446 42.857 14.22 5.89 39.69 3.02
1794 1977 3.628032 AGTTCAGATGCAGCATGATCTTG 59.372 43.478 14.22 4.25 39.69 3.02
1795 1978 3.878103 GAGTTCAGATGCAGCATGATCTT 59.122 43.478 14.22 0.00 39.69 2.40
1796 1979 3.118371 TGAGTTCAGATGCAGCATGATCT 60.118 43.478 14.22 10.78 39.69 2.75
1797 1980 3.203716 TGAGTTCAGATGCAGCATGATC 58.796 45.455 14.22 5.80 39.69 2.92
1798 1981 3.277142 TGAGTTCAGATGCAGCATGAT 57.723 42.857 14.22 0.00 39.69 2.45
1799 1982 2.773993 TGAGTTCAGATGCAGCATGA 57.226 45.000 14.22 3.12 39.69 3.07
1800 1983 3.007635 TCTTGAGTTCAGATGCAGCATG 58.992 45.455 14.22 0.08 40.87 4.06
1801 1984 3.055312 TCTCTTGAGTTCAGATGCAGCAT 60.055 43.478 7.91 7.91 0.00 3.79
1802 1985 2.301009 TCTCTTGAGTTCAGATGCAGCA 59.699 45.455 4.07 0.00 0.00 4.41
1803 1986 2.969990 TCTCTTGAGTTCAGATGCAGC 58.030 47.619 0.00 0.00 0.00 5.25
1807 1990 6.985059 TCATTAGCATCTCTTGAGTTCAGATG 59.015 38.462 4.14 4.14 39.29 2.90
1808 1991 7.122138 TCATTAGCATCTCTTGAGTTCAGAT 57.878 36.000 0.00 0.00 0.00 2.90
1809 1992 6.535963 TCATTAGCATCTCTTGAGTTCAGA 57.464 37.500 0.00 0.00 0.00 3.27
1810 1993 7.606858 TTTCATTAGCATCTCTTGAGTTCAG 57.393 36.000 0.00 0.00 0.00 3.02
1811 1994 8.045507 AGATTTCATTAGCATCTCTTGAGTTCA 58.954 33.333 0.00 0.00 0.00 3.18
1812 1995 8.436046 AGATTTCATTAGCATCTCTTGAGTTC 57.564 34.615 0.00 0.00 0.00 3.01
1813 1996 8.804912 AAGATTTCATTAGCATCTCTTGAGTT 57.195 30.769 0.00 0.00 0.00 3.01
1814 1997 8.266473 AGAAGATTTCATTAGCATCTCTTGAGT 58.734 33.333 0.00 0.00 0.00 3.41
1815 1998 8.665643 AGAAGATTTCATTAGCATCTCTTGAG 57.334 34.615 0.00 0.00 0.00 3.02
1867 2050 8.909923 CCTATTTTCCTAATTTTGTCCCGTATT 58.090 33.333 0.00 0.00 0.00 1.89
1868 2051 7.013942 GCCTATTTTCCTAATTTTGTCCCGTAT 59.986 37.037 0.00 0.00 0.00 3.06
1869 2052 6.319405 GCCTATTTTCCTAATTTTGTCCCGTA 59.681 38.462 0.00 0.00 0.00 4.02
1870 2053 5.126545 GCCTATTTTCCTAATTTTGTCCCGT 59.873 40.000 0.00 0.00 0.00 5.28
1871 2054 5.451381 GGCCTATTTTCCTAATTTTGTCCCG 60.451 44.000 0.00 0.00 0.00 5.14
1872 2055 5.423931 TGGCCTATTTTCCTAATTTTGTCCC 59.576 40.000 3.32 0.00 0.00 4.46
1873 2056 6.071051 TGTGGCCTATTTTCCTAATTTTGTCC 60.071 38.462 3.32 0.00 0.00 4.02
1874 2057 6.930731 TGTGGCCTATTTTCCTAATTTTGTC 58.069 36.000 3.32 0.00 0.00 3.18
1875 2058 6.926630 TGTGGCCTATTTTCCTAATTTTGT 57.073 33.333 3.32 0.00 0.00 2.83
1876 2059 7.659390 TGTTTGTGGCCTATTTTCCTAATTTTG 59.341 33.333 3.32 0.00 0.00 2.44
1877 2060 7.659799 GTGTTTGTGGCCTATTTTCCTAATTTT 59.340 33.333 3.32 0.00 0.00 1.82
1878 2061 7.016170 AGTGTTTGTGGCCTATTTTCCTAATTT 59.984 33.333 3.32 0.00 0.00 1.82
1879 2062 6.496911 AGTGTTTGTGGCCTATTTTCCTAATT 59.503 34.615 3.32 0.00 0.00 1.40
1880 2063 6.016555 AGTGTTTGTGGCCTATTTTCCTAAT 58.983 36.000 3.32 0.00 0.00 1.73
1881 2064 5.390387 AGTGTTTGTGGCCTATTTTCCTAA 58.610 37.500 3.32 0.00 0.00 2.69
1882 2065 4.993028 AGTGTTTGTGGCCTATTTTCCTA 58.007 39.130 3.32 0.00 0.00 2.94
1883 2066 3.844640 AGTGTTTGTGGCCTATTTTCCT 58.155 40.909 3.32 0.00 0.00 3.36
1884 2067 4.082408 GGTAGTGTTTGTGGCCTATTTTCC 60.082 45.833 3.32 0.00 0.00 3.13
1885 2068 4.379082 CGGTAGTGTTTGTGGCCTATTTTC 60.379 45.833 3.32 0.00 0.00 2.29
1886 2069 3.504520 CGGTAGTGTTTGTGGCCTATTTT 59.495 43.478 3.32 0.00 0.00 1.82
1887 2070 3.078837 CGGTAGTGTTTGTGGCCTATTT 58.921 45.455 3.32 0.00 0.00 1.40
1888 2071 2.617021 CCGGTAGTGTTTGTGGCCTATT 60.617 50.000 3.32 0.00 0.00 1.73
1889 2072 1.065709 CCGGTAGTGTTTGTGGCCTAT 60.066 52.381 3.32 0.00 0.00 2.57
1890 2073 0.322322 CCGGTAGTGTTTGTGGCCTA 59.678 55.000 3.32 0.00 0.00 3.93
1891 2074 1.072505 CCGGTAGTGTTTGTGGCCT 59.927 57.895 3.32 0.00 0.00 5.19
1892 2075 0.535553 TTCCGGTAGTGTTTGTGGCC 60.536 55.000 0.00 0.00 0.00 5.36
1893 2076 1.002142 GTTTCCGGTAGTGTTTGTGGC 60.002 52.381 0.00 0.00 0.00 5.01
1894 2077 2.289547 CAGTTTCCGGTAGTGTTTGTGG 59.710 50.000 0.00 0.00 0.00 4.17
1895 2078 2.289547 CCAGTTTCCGGTAGTGTTTGTG 59.710 50.000 0.00 0.00 0.00 3.33
1896 2079 2.567985 CCAGTTTCCGGTAGTGTTTGT 58.432 47.619 0.00 0.00 0.00 2.83
1897 2080 1.265905 GCCAGTTTCCGGTAGTGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
1898 2081 1.601166 GCCAGTTTCCGGTAGTGTTT 58.399 50.000 0.00 0.00 0.00 2.83
2521 2768 8.067784 CGTGCTCGAAAAATACAAACCATATAT 58.932 33.333 1.00 0.00 39.71 0.86
2522 2769 7.064847 ACGTGCTCGAAAAATACAAACCATATA 59.935 33.333 16.04 0.00 40.62 0.86
2523 2770 6.128117 ACGTGCTCGAAAAATACAAACCATAT 60.128 34.615 16.04 0.00 40.62 1.78
2524 2771 5.179742 ACGTGCTCGAAAAATACAAACCATA 59.820 36.000 16.04 0.00 40.62 2.74
2525 2772 4.023536 ACGTGCTCGAAAAATACAAACCAT 60.024 37.500 16.04 0.00 40.62 3.55
2526 2773 3.312973 ACGTGCTCGAAAAATACAAACCA 59.687 39.130 16.04 0.00 40.62 3.67
2838 3102 1.002134 CACGGATGGGCTTTGACCT 60.002 57.895 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.