Multiple sequence alignment - TraesCS7A01G056700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G056700 chr7A 100.000 5218 0 0 1 5218 27292807 27287590 0.000000e+00 9636.0
1 TraesCS7A01G056700 chr7A 84.483 3596 393 90 1001 4505 27282559 27279038 0.000000e+00 3397.0
2 TraesCS7A01G056700 chr7A 86.527 334 42 3 3314 3645 27244046 27243714 1.070000e-96 364.0
3 TraesCS7A01G056700 chr7A 83.099 355 37 12 2006 2351 27251141 27250801 8.490000e-78 302.0
4 TraesCS7A01G056700 chr7A 90.533 169 16 0 3703 3871 27243685 27243517 1.890000e-54 224.0
5 TraesCS7A01G056700 chr7A 89.941 169 16 1 3703 3871 27233168 27233001 3.160000e-52 217.0
6 TraesCS7A01G056700 chr7A 83.417 199 22 7 2003 2195 27233635 27233442 1.930000e-39 174.0
7 TraesCS7A01G056700 chr7A 86.538 156 18 2 1 153 583643304 583643459 8.990000e-38 169.0
8 TraesCS7A01G056700 chr7A 94.495 109 4 2 4821 4929 27287879 27287773 3.230000e-37 167.0
9 TraesCS7A01G056700 chr7A 94.495 109 4 2 4929 5035 27287987 27287879 3.230000e-37 167.0
10 TraesCS7A01G056700 chr7A 79.498 239 32 11 3962 4200 295099722 295099943 2.520000e-33 154.0
11 TraesCS7A01G056700 chr7A 76.527 311 46 16 1003 1313 27233959 27233676 1.510000e-30 145.0
12 TraesCS7A01G056700 chr7A 92.157 102 7 1 83 183 539483579 539483478 5.450000e-30 143.0
13 TraesCS7A01G056700 chr7A 88.136 118 12 1 4060 4175 27241173 27241056 7.050000e-29 139.0
14 TraesCS7A01G056700 chr7D 93.134 2971 151 24 1557 4496 27096222 27093274 0.000000e+00 4307.0
15 TraesCS7A01G056700 chr7D 83.627 2040 234 50 962 2965 27050435 27048460 0.000000e+00 1825.0
16 TraesCS7A01G056700 chr7D 84.798 1684 175 40 2865 4505 26819625 26817980 0.000000e+00 1616.0
17 TraesCS7A01G056700 chr7D 81.269 1970 226 60 962 2870 26821607 26819720 0.000000e+00 1461.0
18 TraesCS7A01G056700 chr7D 86.015 1187 113 27 2771 3926 27048583 27047419 0.000000e+00 1223.0
19 TraesCS7A01G056700 chr7D 92.374 695 40 9 920 1607 27096911 27096223 0.000000e+00 977.0
20 TraesCS7A01G056700 chr7D 83.061 673 81 21 3868 4515 26833930 26833266 9.740000e-162 580.0
21 TraesCS7A01G056700 chr7D 90.847 437 12 9 4805 5217 27056612 27056180 1.270000e-155 560.0
22 TraesCS7A01G056700 chr7D 80.743 592 70 24 3942 4515 27047370 27046805 6.250000e-114 422.0
23 TraesCS7A01G056700 chr7D 85.273 421 46 12 2871 3278 26834996 26834579 2.250000e-113 420.0
24 TraesCS7A01G056700 chr7D 96.414 251 7 2 4514 4764 27056857 27056609 3.760000e-111 412.0
25 TraesCS7A01G056700 chr7D 87.500 352 39 4 3295 3645 26982394 26982047 8.140000e-108 401.0
26 TraesCS7A01G056700 chr7D 86.932 352 41 4 3295 3645 27012250 27011903 1.760000e-104 390.0
27 TraesCS7A01G056700 chr7D 84.680 359 44 7 3295 3645 26834527 26834172 1.080000e-91 348.0
28 TraesCS7A01G056700 chr7D 84.789 355 37 12 2006 2351 26983140 26982794 1.800000e-89 340.0
29 TraesCS7A01G056700 chr7D 83.476 351 40 13 2006 2347 27037336 27036995 1.410000e-80 311.0
30 TraesCS7A01G056700 chr7D 92.308 169 12 1 3703 3871 26791592 26791425 6.750000e-59 239.0
31 TraesCS7A01G056700 chr7D 87.097 217 19 4 3663 3871 26834191 26833976 2.430000e-58 237.0
32 TraesCS7A01G056700 chr7D 93.243 148 10 0 3703 3850 26982018 26981871 8.800000e-53 219.0
33 TraesCS7A01G056700 chr7D 88.824 170 14 2 3703 3871 27011874 27011709 2.460000e-48 204.0
34 TraesCS7A01G056700 chr7D 76.982 391 67 15 3431 3808 268835170 268835550 8.860000e-48 202.0
35 TraesCS7A01G056700 chr7D 85.052 194 21 5 2009 2195 26792058 26791866 1.920000e-44 191.0
36 TraesCS7A01G056700 chr7D 78.750 240 43 6 3962 4200 268835845 268836077 2.520000e-33 154.0
37 TraesCS7A01G056700 chr7D 91.667 108 6 2 4929 5035 27056596 27056491 4.210000e-31 147.0
38 TraesCS7A01G056700 chr7D 97.143 70 2 0 3576 3645 26791690 26791621 9.180000e-23 119.0
39 TraesCS7A01G056700 chr7D 87.654 81 3 2 4849 4929 27056434 27056361 2.590000e-13 87.9
40 TraesCS7A01G056700 chr7D 100.000 43 0 0 4821 4863 27056491 27056449 4.330000e-11 80.5
41 TraesCS7A01G056700 chr4A 84.865 3079 322 66 1508 4505 704647593 704644578 0.000000e+00 2972.0
42 TraesCS7A01G056700 chr4A 84.136 851 92 22 3675 4505 704629332 704628505 0.000000e+00 784.0
43 TraesCS7A01G056700 chr4A 83.790 839 92 22 3683 4501 704598247 704597433 0.000000e+00 756.0
44 TraesCS7A01G056700 chr4A 83.353 829 99 22 3702 4515 704578358 704577554 0.000000e+00 730.0
45 TraesCS7A01G056700 chr4A 81.353 665 98 16 3871 4513 710852049 710851389 7.750000e-143 518.0
46 TraesCS7A01G056700 chr4A 87.437 398 40 7 965 1358 704648132 704647741 2.870000e-122 449.0
47 TraesCS7A01G056700 chr4A 84.521 407 48 12 2854 3247 710852968 710852564 6.340000e-104 388.0
48 TraesCS7A01G056700 chr4A 87.279 283 27 9 962 1242 704657003 704656728 1.090000e-81 315.0
49 TraesCS7A01G056700 chr4A 95.000 120 6 0 1 120 59422905 59422786 6.900000e-44 189.0
50 TraesCS7A01G056700 chrUn 94.352 602 28 4 1862 2458 296087788 296088388 0.000000e+00 918.0
51 TraesCS7A01G056700 chrUn 94.352 602 28 4 1862 2458 296092890 296093490 0.000000e+00 918.0
52 TraesCS7A01G056700 chrUn 94.352 602 28 4 1862 2458 352685284 352685884 0.000000e+00 918.0
53 TraesCS7A01G056700 chr1B 91.573 534 44 1 298 831 143086741 143086209 0.000000e+00 736.0
54 TraesCS7A01G056700 chr1B 91.557 533 44 1 297 828 685735319 685735851 0.000000e+00 734.0
55 TraesCS7A01G056700 chr2A 91.698 530 43 1 300 828 11777886 11778415 0.000000e+00 734.0
56 TraesCS7A01G056700 chr5D 91.525 531 45 0 301 831 36488060 36487530 0.000000e+00 732.0
57 TraesCS7A01G056700 chr5D 90.217 184 16 2 1 183 287908162 287907980 6.750000e-59 239.0
58 TraesCS7A01G056700 chr3B 91.541 532 44 1 297 828 537418235 537418765 0.000000e+00 732.0
59 TraesCS7A01G056700 chr3B 100.000 29 0 0 4756 4784 30405937 30405965 3.000000e-03 54.7
60 TraesCS7A01G056700 chr3B 100.000 28 0 0 4755 4782 578319655 578319682 9.000000e-03 52.8
61 TraesCS7A01G056700 chr2B 91.402 535 44 2 296 828 8493903 8494437 0.000000e+00 732.0
62 TraesCS7A01G056700 chr2B 91.525 531 44 1 299 828 131602970 131603500 0.000000e+00 730.0
63 TraesCS7A01G056700 chr2B 91.386 534 45 1 299 831 212573041 212572508 0.000000e+00 730.0
64 TraesCS7A01G056700 chr2B 96.000 50 1 1 4760 4808 172679903 172679952 4.330000e-11 80.5
65 TraesCS7A01G056700 chr2B 100.000 30 0 0 4755 4784 283568828 283568799 7.300000e-04 56.5
66 TraesCS7A01G056700 chr2B 100.000 28 0 0 4757 4784 797734187 797734160 9.000000e-03 52.8
67 TraesCS7A01G056700 chr1D 91.525 531 43 2 299 828 53166083 53166612 0.000000e+00 730.0
68 TraesCS7A01G056700 chr1D 87.821 156 16 2 1 153 309002786 309002631 4.150000e-41 180.0
69 TraesCS7A01G056700 chr3D 90.683 161 15 0 23 183 612121066 612121226 1.140000e-51 215.0
70 TraesCS7A01G056700 chr3D 89.286 112 11 1 73 183 178613499 178613610 7.050000e-29 139.0
71 TraesCS7A01G056700 chr5A 92.366 131 10 0 1 131 309642873 309643003 2.480000e-43 187.0
72 TraesCS7A01G056700 chr4B 94.167 120 7 0 1 120 581785064 581784945 3.210000e-42 183.0
73 TraesCS7A01G056700 chr4B 100.000 28 0 0 4755 4782 602833027 602833054 9.000000e-03 52.8
74 TraesCS7A01G056700 chr1A 94.167 120 7 0 1 120 34718579 34718698 3.210000e-42 183.0
75 TraesCS7A01G056700 chr1A 94.167 120 7 0 1 120 209335070 209335189 3.210000e-42 183.0
76 TraesCS7A01G056700 chr6A 90.991 111 10 0 73 183 124298991 124298881 3.260000e-32 150.0
77 TraesCS7A01G056700 chr7B 78.333 240 45 7 3962 4200 272753052 272752819 1.170000e-31 148.0
78 TraesCS7A01G056700 chr7B 100.000 28 0 0 4755 4782 568249365 568249338 9.000000e-03 52.8
79 TraesCS7A01G056700 chr6D 91.346 104 9 0 80 183 191850432 191850329 5.450000e-30 143.0
80 TraesCS7A01G056700 chr4D 90.000 110 11 0 74 183 501268028 501268137 5.450000e-30 143.0
81 TraesCS7A01G056700 chr3A 90.090 111 10 1 74 183 457095993 457096103 5.450000e-30 143.0
82 TraesCS7A01G056700 chr2D 90.741 108 9 1 77 183 340230120 340230227 5.450000e-30 143.0
83 TraesCS7A01G056700 chr6B 92.683 41 1 2 4780 4818 607133251 607133211 2.030000e-04 58.4
84 TraesCS7A01G056700 chr5B 92.683 41 1 2 4780 4818 531623660 531623620 2.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G056700 chr7A 27287590 27292807 5217 True 9636.000000 9636 100.000000 1 5218 1 chr7A.!!$R3 5217
1 TraesCS7A01G056700 chr7A 27279038 27282559 3521 True 3397.000000 3397 84.483000 1001 4505 1 chr7A.!!$R2 3504
2 TraesCS7A01G056700 chr7A 27241056 27244046 2990 True 242.333333 364 88.398667 3314 4175 3 chr7A.!!$R6 861
3 TraesCS7A01G056700 chr7D 27093274 27096911 3637 True 2642.000000 4307 92.754000 920 4496 2 chr7D.!!$R9 3576
4 TraesCS7A01G056700 chr7D 26817980 26821607 3627 True 1538.500000 1616 83.033500 962 4505 2 chr7D.!!$R3 3543
5 TraesCS7A01G056700 chr7D 27046805 27050435 3630 True 1156.666667 1825 83.461667 962 4515 3 chr7D.!!$R7 3553
6 TraesCS7A01G056700 chr7D 26833266 26834996 1730 True 396.250000 580 85.027750 2871 4515 4 chr7D.!!$R4 1644
7 TraesCS7A01G056700 chr7D 26981871 26983140 1269 True 320.000000 401 88.510667 2006 3850 3 chr7D.!!$R5 1844
8 TraesCS7A01G056700 chr7D 27011709 27012250 541 True 297.000000 390 87.878000 3295 3871 2 chr7D.!!$R6 576
9 TraesCS7A01G056700 chr7D 27056180 27056857 677 True 257.480000 560 93.316400 4514 5217 5 chr7D.!!$R8 703
10 TraesCS7A01G056700 chr4A 704644578 704648132 3554 True 1710.500000 2972 86.151000 965 4505 2 chr4A.!!$R6 3540
11 TraesCS7A01G056700 chr4A 704628505 704629332 827 True 784.000000 784 84.136000 3675 4505 1 chr4A.!!$R4 830
12 TraesCS7A01G056700 chr4A 704597433 704598247 814 True 756.000000 756 83.790000 3683 4501 1 chr4A.!!$R3 818
13 TraesCS7A01G056700 chr4A 704577554 704578358 804 True 730.000000 730 83.353000 3702 4515 1 chr4A.!!$R2 813
14 TraesCS7A01G056700 chr4A 710851389 710852968 1579 True 453.000000 518 82.937000 2854 4513 2 chr4A.!!$R7 1659
15 TraesCS7A01G056700 chrUn 296087788 296088388 600 False 918.000000 918 94.352000 1862 2458 1 chrUn.!!$F1 596
16 TraesCS7A01G056700 chrUn 296092890 296093490 600 False 918.000000 918 94.352000 1862 2458 1 chrUn.!!$F2 596
17 TraesCS7A01G056700 chrUn 352685284 352685884 600 False 918.000000 918 94.352000 1862 2458 1 chrUn.!!$F3 596
18 TraesCS7A01G056700 chr1B 143086209 143086741 532 True 736.000000 736 91.573000 298 831 1 chr1B.!!$R1 533
19 TraesCS7A01G056700 chr1B 685735319 685735851 532 False 734.000000 734 91.557000 297 828 1 chr1B.!!$F1 531
20 TraesCS7A01G056700 chr2A 11777886 11778415 529 False 734.000000 734 91.698000 300 828 1 chr2A.!!$F1 528
21 TraesCS7A01G056700 chr5D 36487530 36488060 530 True 732.000000 732 91.525000 301 831 1 chr5D.!!$R1 530
22 TraesCS7A01G056700 chr3B 537418235 537418765 530 False 732.000000 732 91.541000 297 828 1 chr3B.!!$F2 531
23 TraesCS7A01G056700 chr2B 8493903 8494437 534 False 732.000000 732 91.402000 296 828 1 chr2B.!!$F1 532
24 TraesCS7A01G056700 chr2B 131602970 131603500 530 False 730.000000 730 91.525000 299 828 1 chr2B.!!$F2 529
25 TraesCS7A01G056700 chr2B 212572508 212573041 533 True 730.000000 730 91.386000 299 831 1 chr2B.!!$R1 532
26 TraesCS7A01G056700 chr1D 53166083 53166612 529 False 730.000000 730 91.525000 299 828 1 chr1D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 759 0.036671 CACCAGCATCAGCACAGAGA 60.037 55.000 0.00 0.0 45.49 3.10 F
1372 1388 0.109781 CTGTTTCATTTCGCCCACCG 60.110 55.000 0.00 0.0 38.61 4.94 F
1930 2090 1.977129 TGGGCTTTCTTTCAATTGGGG 59.023 47.619 5.42 0.0 0.00 4.96 F
3438 3845 0.170339 AACTCCGCGGCTTATTTTGC 59.830 50.000 23.51 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2423 1.069978 CGAAATGTTGGCCCCTTTTGT 59.930 47.619 0.0 0.0 0.00 2.83 R
2454 2641 2.243810 TGGATTTTTGGAACGGAAGGG 58.756 47.619 0.0 0.0 0.00 3.95 R
3701 4110 1.053835 TGTGCTGGTCAGGTTCTGGA 61.054 55.000 0.0 0.0 31.51 3.86 R
4758 7410 0.115745 TGGGACGGAGGGAGTACTTT 59.884 55.000 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.337578 TTTCACTTTTGCCACTTTTAGCT 57.662 34.783 0.00 0.00 0.00 3.32
24 25 5.337578 TTCACTTTTGCCACTTTTAGCTT 57.662 34.783 0.00 0.00 0.00 3.74
25 26 5.337578 TCACTTTTGCCACTTTTAGCTTT 57.662 34.783 0.00 0.00 0.00 3.51
26 27 5.729510 TCACTTTTGCCACTTTTAGCTTTT 58.270 33.333 0.00 0.00 0.00 2.27
27 28 5.580297 TCACTTTTGCCACTTTTAGCTTTTG 59.420 36.000 0.00 0.00 0.00 2.44
28 29 5.580297 CACTTTTGCCACTTTTAGCTTTTGA 59.420 36.000 0.00 0.00 0.00 2.69
29 30 5.580691 ACTTTTGCCACTTTTAGCTTTTGAC 59.419 36.000 0.00 0.00 0.00 3.18
30 31 4.727507 TTGCCACTTTTAGCTTTTGACA 57.272 36.364 0.00 0.00 0.00 3.58
31 32 4.727507 TGCCACTTTTAGCTTTTGACAA 57.272 36.364 0.00 0.00 0.00 3.18
32 33 5.275067 TGCCACTTTTAGCTTTTGACAAT 57.725 34.783 0.00 0.00 0.00 2.71
33 34 6.398234 TGCCACTTTTAGCTTTTGACAATA 57.602 33.333 0.00 0.00 0.00 1.90
34 35 6.991938 TGCCACTTTTAGCTTTTGACAATAT 58.008 32.000 0.00 0.00 0.00 1.28
35 36 8.116651 TGCCACTTTTAGCTTTTGACAATATA 57.883 30.769 0.00 0.00 0.00 0.86
36 37 8.748412 TGCCACTTTTAGCTTTTGACAATATAT 58.252 29.630 0.00 0.00 0.00 0.86
37 38 9.237846 GCCACTTTTAGCTTTTGACAATATATC 57.762 33.333 0.00 0.00 0.00 1.63
45 46 8.693542 AGCTTTTGACAATATATCACTTTTGC 57.306 30.769 0.00 0.00 0.00 3.68
46 47 7.761249 AGCTTTTGACAATATATCACTTTTGCC 59.239 33.333 0.00 0.00 0.00 4.52
47 48 7.545265 GCTTTTGACAATATATCACTTTTGCCA 59.455 33.333 0.00 0.00 0.00 4.92
48 49 9.590451 CTTTTGACAATATATCACTTTTGCCAT 57.410 29.630 0.00 0.00 0.00 4.40
49 50 9.941325 TTTTGACAATATATCACTTTTGCCATT 57.059 25.926 0.00 0.00 0.00 3.16
50 51 9.941325 TTTGACAATATATCACTTTTGCCATTT 57.059 25.926 0.00 0.00 0.00 2.32
51 52 9.585099 TTGACAATATATCACTTTTGCCATTTC 57.415 29.630 0.00 0.00 0.00 2.17
52 53 8.747471 TGACAATATATCACTTTTGCCATTTCA 58.253 29.630 0.00 0.00 0.00 2.69
53 54 9.754382 GACAATATATCACTTTTGCCATTTCAT 57.246 29.630 0.00 0.00 0.00 2.57
54 55 9.537192 ACAATATATCACTTTTGCCATTTCATG 57.463 29.630 0.00 0.00 0.00 3.07
66 67 4.832590 CCATTTCATGGCAAAAGCAAAA 57.167 36.364 0.00 0.00 44.70 2.44
67 68 5.184340 CCATTTCATGGCAAAAGCAAAAA 57.816 34.783 0.00 0.00 44.70 1.94
68 69 4.977347 CCATTTCATGGCAAAAGCAAAAAC 59.023 37.500 0.00 0.00 44.70 2.43
69 70 5.221087 CCATTTCATGGCAAAAGCAAAAACT 60.221 36.000 0.00 0.00 44.70 2.66
70 71 5.893897 TTTCATGGCAAAAGCAAAAACTT 57.106 30.435 0.00 0.00 0.00 2.66
71 72 5.893897 TTCATGGCAAAAGCAAAAACTTT 57.106 30.435 0.00 0.00 41.60 2.66
72 73 6.992063 TTCATGGCAAAAGCAAAAACTTTA 57.008 29.167 0.00 0.00 38.92 1.85
73 74 6.601741 TCATGGCAAAAGCAAAAACTTTAG 57.398 33.333 0.00 0.00 38.92 1.85
74 75 6.344500 TCATGGCAAAAGCAAAAACTTTAGA 58.656 32.000 0.00 0.00 38.92 2.10
75 76 6.479660 TCATGGCAAAAGCAAAAACTTTAGAG 59.520 34.615 0.00 0.00 38.92 2.43
76 77 5.729510 TGGCAAAAGCAAAAACTTTAGAGT 58.270 33.333 0.00 0.00 38.92 3.24
77 78 5.580297 TGGCAAAAGCAAAAACTTTAGAGTG 59.420 36.000 0.00 0.00 38.92 3.51
78 79 5.492854 GCAAAAGCAAAAACTTTAGAGTGC 58.507 37.500 0.00 0.00 38.92 4.40
79 80 5.502382 GCAAAAGCAAAAACTTTAGAGTGCC 60.502 40.000 0.00 0.00 38.92 5.01
80 81 5.337578 AAAGCAAAAACTTTAGAGTGCCA 57.662 34.783 0.00 0.00 38.09 4.92
81 82 5.337578 AAGCAAAAACTTTAGAGTGCCAA 57.662 34.783 0.00 0.00 35.91 4.52
82 83 5.535753 AGCAAAAACTTTAGAGTGCCAAT 57.464 34.783 0.00 0.00 35.91 3.16
83 84 5.917462 AGCAAAAACTTTAGAGTGCCAATT 58.083 33.333 0.00 0.00 35.91 2.32
84 85 5.754890 AGCAAAAACTTTAGAGTGCCAATTG 59.245 36.000 0.00 0.00 35.91 2.32
85 86 5.523552 GCAAAAACTTTAGAGTGCCAATTGT 59.476 36.000 4.43 0.00 35.91 2.71
86 87 6.699642 GCAAAAACTTTAGAGTGCCAATTGTA 59.300 34.615 4.43 0.00 35.91 2.41
87 88 7.223777 GCAAAAACTTTAGAGTGCCAATTGTAA 59.776 33.333 4.43 0.00 35.91 2.41
88 89 9.260002 CAAAAACTTTAGAGTGCCAATTGTAAT 57.740 29.630 4.43 0.00 35.91 1.89
90 91 9.908152 AAAACTTTAGAGTGCCAATTGTAATAC 57.092 29.630 4.43 0.00 35.91 1.89
91 92 8.630054 AACTTTAGAGTGCCAATTGTAATACA 57.370 30.769 4.43 0.00 35.91 2.29
92 93 8.807948 ACTTTAGAGTGCCAATTGTAATACAT 57.192 30.769 4.43 0.00 33.99 2.29
93 94 8.677300 ACTTTAGAGTGCCAATTGTAATACATG 58.323 33.333 4.43 0.00 33.99 3.21
94 95 8.574251 TTTAGAGTGCCAATTGTAATACATGT 57.426 30.769 2.69 2.69 0.00 3.21
95 96 6.683974 AGAGTGCCAATTGTAATACATGTC 57.316 37.500 0.00 0.00 0.00 3.06
96 97 6.179756 AGAGTGCCAATTGTAATACATGTCA 58.820 36.000 0.00 0.00 0.00 3.58
97 98 6.658816 AGAGTGCCAATTGTAATACATGTCAA 59.341 34.615 0.00 0.02 0.00 3.18
98 99 7.176515 AGAGTGCCAATTGTAATACATGTCAAA 59.823 33.333 0.00 0.00 0.00 2.69
99 100 7.665690 AGTGCCAATTGTAATACATGTCAAAA 58.334 30.769 0.00 0.00 0.00 2.44
100 101 7.814107 AGTGCCAATTGTAATACATGTCAAAAG 59.186 33.333 0.00 0.00 0.00 2.27
101 102 7.063308 GTGCCAATTGTAATACATGTCAAAAGG 59.937 37.037 0.00 7.98 0.00 3.11
102 103 7.096551 GCCAATTGTAATACATGTCAAAAGGT 58.903 34.615 0.00 0.00 0.00 3.50
103 104 8.247562 GCCAATTGTAATACATGTCAAAAGGTA 58.752 33.333 0.00 0.00 0.00 3.08
108 109 9.787435 TTGTAATACATGTCAAAAGGTAAGAGT 57.213 29.630 0.00 0.00 0.00 3.24
109 110 9.214957 TGTAATACATGTCAAAAGGTAAGAGTG 57.785 33.333 0.00 0.00 0.00 3.51
110 111 7.687941 AATACATGTCAAAAGGTAAGAGTGG 57.312 36.000 0.00 0.00 0.00 4.00
111 112 3.821033 ACATGTCAAAAGGTAAGAGTGGC 59.179 43.478 0.00 0.00 0.00 5.01
112 113 3.569194 TGTCAAAAGGTAAGAGTGGCA 57.431 42.857 0.00 0.00 0.00 4.92
113 114 3.892284 TGTCAAAAGGTAAGAGTGGCAA 58.108 40.909 0.00 0.00 0.00 4.52
114 115 4.274147 TGTCAAAAGGTAAGAGTGGCAAA 58.726 39.130 0.00 0.00 0.00 3.68
115 116 4.707448 TGTCAAAAGGTAAGAGTGGCAAAA 59.293 37.500 0.00 0.00 0.00 2.44
116 117 5.163561 TGTCAAAAGGTAAGAGTGGCAAAAG 60.164 40.000 0.00 0.00 0.00 2.27
117 118 4.953579 TCAAAAGGTAAGAGTGGCAAAAGT 59.046 37.500 0.00 0.00 0.00 2.66
118 119 4.918810 AAAGGTAAGAGTGGCAAAAGTG 57.081 40.909 0.00 0.00 0.00 3.16
119 120 3.857157 AGGTAAGAGTGGCAAAAGTGA 57.143 42.857 0.00 0.00 0.00 3.41
120 121 3.744660 AGGTAAGAGTGGCAAAAGTGAG 58.255 45.455 0.00 0.00 0.00 3.51
121 122 2.814336 GGTAAGAGTGGCAAAAGTGAGG 59.186 50.000 0.00 0.00 0.00 3.86
122 123 2.736670 AAGAGTGGCAAAAGTGAGGT 57.263 45.000 0.00 0.00 0.00 3.85
123 124 1.972872 AGAGTGGCAAAAGTGAGGTG 58.027 50.000 0.00 0.00 0.00 4.00
124 125 1.212935 AGAGTGGCAAAAGTGAGGTGT 59.787 47.619 0.00 0.00 0.00 4.16
125 126 1.604278 GAGTGGCAAAAGTGAGGTGTC 59.396 52.381 0.00 0.00 0.00 3.67
126 127 1.064758 AGTGGCAAAAGTGAGGTGTCA 60.065 47.619 0.00 0.00 0.00 3.58
127 128 1.748493 GTGGCAAAAGTGAGGTGTCAA 59.252 47.619 0.00 0.00 33.27 3.18
128 129 2.165437 GTGGCAAAAGTGAGGTGTCAAA 59.835 45.455 0.00 0.00 33.27 2.69
129 130 3.030291 TGGCAAAAGTGAGGTGTCAAAT 58.970 40.909 0.00 0.00 33.27 2.32
130 131 3.450457 TGGCAAAAGTGAGGTGTCAAATT 59.550 39.130 0.00 0.00 33.27 1.82
131 132 4.051237 GGCAAAAGTGAGGTGTCAAATTC 58.949 43.478 0.00 0.00 33.27 2.17
132 133 4.202151 GGCAAAAGTGAGGTGTCAAATTCT 60.202 41.667 0.00 0.00 33.27 2.40
133 134 5.009610 GGCAAAAGTGAGGTGTCAAATTCTA 59.990 40.000 0.00 0.00 33.27 2.10
134 135 6.145535 GCAAAAGTGAGGTGTCAAATTCTAG 58.854 40.000 0.00 0.00 33.27 2.43
135 136 6.017109 GCAAAAGTGAGGTGTCAAATTCTAGA 60.017 38.462 0.00 0.00 33.27 2.43
136 137 7.579726 CAAAAGTGAGGTGTCAAATTCTAGAG 58.420 38.462 0.00 0.00 33.27 2.43
137 138 6.426646 AAGTGAGGTGTCAAATTCTAGAGT 57.573 37.500 0.00 0.00 33.27 3.24
138 139 5.788450 AGTGAGGTGTCAAATTCTAGAGTG 58.212 41.667 0.00 0.00 33.27 3.51
139 140 4.932200 GTGAGGTGTCAAATTCTAGAGTGG 59.068 45.833 0.00 0.00 33.27 4.00
140 141 3.935828 GAGGTGTCAAATTCTAGAGTGGC 59.064 47.826 0.00 0.00 0.00 5.01
141 142 3.327757 AGGTGTCAAATTCTAGAGTGGCA 59.672 43.478 3.98 3.98 0.00 4.92
142 143 4.018960 AGGTGTCAAATTCTAGAGTGGCAT 60.019 41.667 9.73 0.00 0.00 4.40
143 144 5.189736 AGGTGTCAAATTCTAGAGTGGCATA 59.810 40.000 9.73 0.00 0.00 3.14
144 145 5.880332 GGTGTCAAATTCTAGAGTGGCATAA 59.120 40.000 9.73 0.00 0.00 1.90
145 146 6.037610 GGTGTCAAATTCTAGAGTGGCATAAG 59.962 42.308 9.73 0.00 0.00 1.73
146 147 5.586243 TGTCAAATTCTAGAGTGGCATAAGC 59.414 40.000 3.98 0.00 41.10 3.09
147 148 5.586243 GTCAAATTCTAGAGTGGCATAAGCA 59.414 40.000 0.00 0.00 44.61 3.91
148 149 6.094048 GTCAAATTCTAGAGTGGCATAAGCAA 59.906 38.462 0.00 0.00 44.61 3.91
149 150 6.658816 TCAAATTCTAGAGTGGCATAAGCAAA 59.341 34.615 0.00 0.00 44.61 3.68
150 151 7.176515 TCAAATTCTAGAGTGGCATAAGCAAAA 59.823 33.333 0.00 0.00 44.61 2.44
151 152 7.651027 AATTCTAGAGTGGCATAAGCAAAAT 57.349 32.000 0.00 0.00 44.61 1.82
152 153 6.441093 TTCTAGAGTGGCATAAGCAAAATG 57.559 37.500 0.00 0.00 44.61 2.32
153 154 4.883585 TCTAGAGTGGCATAAGCAAAATGG 59.116 41.667 0.00 0.00 44.61 3.16
154 155 2.762327 AGAGTGGCATAAGCAAAATGGG 59.238 45.455 0.00 0.00 44.61 4.00
155 156 1.207811 AGTGGCATAAGCAAAATGGGC 59.792 47.619 0.00 0.00 44.61 5.36
156 157 1.066286 GTGGCATAAGCAAAATGGGCA 60.066 47.619 0.00 0.00 44.61 5.36
157 158 1.627329 TGGCATAAGCAAAATGGGCAA 59.373 42.857 0.00 0.00 44.61 4.52
158 159 2.039480 TGGCATAAGCAAAATGGGCAAA 59.961 40.909 0.00 0.00 44.61 3.68
159 160 3.080319 GGCATAAGCAAAATGGGCAAAA 58.920 40.909 0.00 0.00 44.61 2.44
160 161 3.505293 GGCATAAGCAAAATGGGCAAAAA 59.495 39.130 0.00 0.00 44.61 1.94
161 162 4.475028 GCATAAGCAAAATGGGCAAAAAC 58.525 39.130 0.00 0.00 41.58 2.43
162 163 4.216042 GCATAAGCAAAATGGGCAAAAACT 59.784 37.500 0.00 0.00 41.58 2.66
163 164 5.691815 CATAAGCAAAATGGGCAAAAACTG 58.308 37.500 0.00 0.00 0.00 3.16
164 165 2.574450 AGCAAAATGGGCAAAAACTGG 58.426 42.857 0.00 0.00 0.00 4.00
165 166 2.172293 AGCAAAATGGGCAAAAACTGGA 59.828 40.909 0.00 0.00 0.00 3.86
166 167 2.549329 GCAAAATGGGCAAAAACTGGAG 59.451 45.455 0.00 0.00 0.00 3.86
167 168 3.807553 CAAAATGGGCAAAAACTGGAGT 58.192 40.909 0.00 0.00 0.00 3.85
168 169 3.473923 AAATGGGCAAAAACTGGAGTG 57.526 42.857 0.00 0.00 0.00 3.51
169 170 1.341080 ATGGGCAAAAACTGGAGTGG 58.659 50.000 0.00 0.00 0.00 4.00
170 171 1.367471 GGGCAAAAACTGGAGTGGC 59.633 57.895 0.00 0.00 35.91 5.01
171 172 1.398958 GGGCAAAAACTGGAGTGGCA 61.399 55.000 0.00 0.00 38.24 4.92
172 173 0.463620 GGCAAAAACTGGAGTGGCAA 59.536 50.000 0.00 0.00 36.61 4.52
173 174 1.134551 GGCAAAAACTGGAGTGGCAAA 60.135 47.619 0.00 0.00 36.61 3.68
174 175 2.626840 GCAAAAACTGGAGTGGCAAAA 58.373 42.857 0.00 0.00 0.00 2.44
175 176 3.006247 GCAAAAACTGGAGTGGCAAAAA 58.994 40.909 0.00 0.00 0.00 1.94
176 177 3.181511 GCAAAAACTGGAGTGGCAAAAAC 60.182 43.478 0.00 0.00 0.00 2.43
177 178 3.971245 AAAACTGGAGTGGCAAAAACA 57.029 38.095 0.00 0.00 0.00 2.83
178 179 3.971245 AAACTGGAGTGGCAAAAACAA 57.029 38.095 0.00 0.00 0.00 2.83
179 180 3.971245 AACTGGAGTGGCAAAAACAAA 57.029 38.095 0.00 0.00 0.00 2.83
180 181 3.525268 ACTGGAGTGGCAAAAACAAAG 57.475 42.857 0.00 0.00 0.00 2.77
181 182 2.831526 ACTGGAGTGGCAAAAACAAAGT 59.168 40.909 0.00 0.00 0.00 2.66
182 183 3.260632 ACTGGAGTGGCAAAAACAAAGTT 59.739 39.130 0.00 0.00 0.00 2.66
183 184 3.594134 TGGAGTGGCAAAAACAAAGTTG 58.406 40.909 0.00 0.00 0.00 3.16
184 185 2.935849 GGAGTGGCAAAAACAAAGTTGG 59.064 45.455 0.00 0.00 0.00 3.77
187 188 0.655208 GGCAAAAACAAAGTTGGCGG 59.345 50.000 0.00 0.00 40.01 6.13
188 189 0.655208 GCAAAAACAAAGTTGGCGGG 59.345 50.000 0.00 0.00 0.00 6.13
189 190 0.655208 CAAAAACAAAGTTGGCGGGC 59.345 50.000 0.00 0.00 0.00 6.13
190 191 0.808060 AAAAACAAAGTTGGCGGGCG 60.808 50.000 0.00 0.00 0.00 6.13
191 192 3.783478 AAACAAAGTTGGCGGGCGC 62.783 57.895 0.00 0.00 41.06 6.53
215 216 2.281414 CCACGTGGGCATGTGTCA 60.281 61.111 27.57 0.00 44.61 3.58
216 217 2.327343 CCACGTGGGCATGTGTCAG 61.327 63.158 27.57 0.00 44.61 3.51
217 218 1.597854 CACGTGGGCATGTGTCAGT 60.598 57.895 7.95 0.00 41.97 3.41
218 219 1.301716 ACGTGGGCATGTGTCAGTC 60.302 57.895 0.00 0.00 0.00 3.51
219 220 2.382746 CGTGGGCATGTGTCAGTCG 61.383 63.158 0.00 0.00 0.00 4.18
220 221 2.034879 GTGGGCATGTGTCAGTCGG 61.035 63.158 0.00 0.00 0.00 4.79
221 222 2.436646 GGGCATGTGTCAGTCGGG 60.437 66.667 0.00 0.00 0.00 5.14
222 223 2.662596 GGCATGTGTCAGTCGGGA 59.337 61.111 0.00 0.00 0.00 5.14
223 224 1.448540 GGCATGTGTCAGTCGGGAG 60.449 63.158 0.00 0.00 0.00 4.30
224 225 1.591703 GCATGTGTCAGTCGGGAGA 59.408 57.895 0.00 0.00 0.00 3.71
225 226 0.459237 GCATGTGTCAGTCGGGAGAG 60.459 60.000 0.00 0.00 41.26 3.20
226 227 0.174389 CATGTGTCAGTCGGGAGAGG 59.826 60.000 0.00 0.00 41.26 3.69
227 228 1.608717 ATGTGTCAGTCGGGAGAGGC 61.609 60.000 0.00 0.00 41.26 4.70
228 229 2.117423 TGTCAGTCGGGAGAGGCA 59.883 61.111 0.00 0.00 41.26 4.75
229 230 1.979155 TGTCAGTCGGGAGAGGCAG 60.979 63.158 0.00 0.00 41.26 4.85
230 231 1.979693 GTCAGTCGGGAGAGGCAGT 60.980 63.158 0.00 0.00 41.26 4.40
231 232 1.228894 TCAGTCGGGAGAGGCAGTT 60.229 57.895 0.00 0.00 41.26 3.16
232 233 1.079543 CAGTCGGGAGAGGCAGTTG 60.080 63.158 0.00 0.00 41.26 3.16
233 234 1.228894 AGTCGGGAGAGGCAGTTGA 60.229 57.895 0.00 0.00 41.26 3.18
234 235 0.616111 AGTCGGGAGAGGCAGTTGAT 60.616 55.000 0.00 0.00 41.26 2.57
235 236 0.460987 GTCGGGAGAGGCAGTTGATG 60.461 60.000 0.00 0.00 41.26 3.07
236 237 0.614697 TCGGGAGAGGCAGTTGATGA 60.615 55.000 0.00 0.00 0.00 2.92
237 238 0.179089 CGGGAGAGGCAGTTGATGAG 60.179 60.000 0.00 0.00 0.00 2.90
238 239 1.198713 GGGAGAGGCAGTTGATGAGA 58.801 55.000 0.00 0.00 0.00 3.27
239 240 1.138661 GGGAGAGGCAGTTGATGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
240 241 2.106566 GGAGAGGCAGTTGATGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
241 242 2.101249 GGAGAGGCAGTTGATGAGAGAG 59.899 54.545 0.00 0.00 0.00 3.20
242 243 3.023119 GAGAGGCAGTTGATGAGAGAGA 58.977 50.000 0.00 0.00 0.00 3.10
243 244 3.025978 AGAGGCAGTTGATGAGAGAGAG 58.974 50.000 0.00 0.00 0.00 3.20
244 245 3.023119 GAGGCAGTTGATGAGAGAGAGA 58.977 50.000 0.00 0.00 0.00 3.10
245 246 3.439154 AGGCAGTTGATGAGAGAGAGAA 58.561 45.455 0.00 0.00 0.00 2.87
246 247 3.448301 AGGCAGTTGATGAGAGAGAGAAG 59.552 47.826 0.00 0.00 0.00 2.85
247 248 3.195396 GGCAGTTGATGAGAGAGAGAAGT 59.805 47.826 0.00 0.00 0.00 3.01
248 249 4.423732 GCAGTTGATGAGAGAGAGAAGTC 58.576 47.826 0.00 0.00 0.00 3.01
249 250 4.661125 CAGTTGATGAGAGAGAGAAGTCG 58.339 47.826 0.00 0.00 0.00 4.18
250 251 3.128589 AGTTGATGAGAGAGAGAAGTCGC 59.871 47.826 0.00 0.00 0.00 5.19
251 252 2.997980 TGATGAGAGAGAGAAGTCGCT 58.002 47.619 0.00 0.00 35.18 4.93
252 253 3.351740 TGATGAGAGAGAGAAGTCGCTT 58.648 45.455 0.00 0.00 32.14 4.68
253 254 3.128415 TGATGAGAGAGAGAAGTCGCTTG 59.872 47.826 0.00 0.00 32.14 4.01
254 255 1.815613 TGAGAGAGAGAAGTCGCTTGG 59.184 52.381 0.00 0.00 32.14 3.61
255 256 1.816224 GAGAGAGAGAAGTCGCTTGGT 59.184 52.381 0.00 0.00 32.14 3.67
256 257 2.230266 GAGAGAGAGAAGTCGCTTGGTT 59.770 50.000 0.00 0.00 32.14 3.67
257 258 2.029470 AGAGAGAGAAGTCGCTTGGTTG 60.029 50.000 0.00 0.00 32.14 3.77
258 259 1.001406 AGAGAGAAGTCGCTTGGTTGG 59.999 52.381 0.00 0.00 26.07 3.77
259 260 0.759346 AGAGAAGTCGCTTGGTTGGT 59.241 50.000 0.00 0.00 0.00 3.67
260 261 1.141053 AGAGAAGTCGCTTGGTTGGTT 59.859 47.619 0.00 0.00 0.00 3.67
261 262 1.947456 GAGAAGTCGCTTGGTTGGTTT 59.053 47.619 0.00 0.00 0.00 3.27
262 263 2.357952 GAGAAGTCGCTTGGTTGGTTTT 59.642 45.455 0.00 0.00 0.00 2.43
263 264 2.758423 AGAAGTCGCTTGGTTGGTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
264 265 2.577449 AGTCGCTTGGTTGGTTTTTG 57.423 45.000 0.00 0.00 0.00 2.44
265 266 2.096248 AGTCGCTTGGTTGGTTTTTGA 58.904 42.857 0.00 0.00 0.00 2.69
266 267 2.159296 AGTCGCTTGGTTGGTTTTTGAC 60.159 45.455 0.00 0.00 0.00 3.18
267 268 1.819288 TCGCTTGGTTGGTTTTTGACA 59.181 42.857 0.00 0.00 0.00 3.58
268 269 2.159310 TCGCTTGGTTGGTTTTTGACAG 60.159 45.455 0.00 0.00 0.00 3.51
269 270 2.159310 CGCTTGGTTGGTTTTTGACAGA 60.159 45.455 0.00 0.00 0.00 3.41
270 271 3.490761 CGCTTGGTTGGTTTTTGACAGAT 60.491 43.478 0.00 0.00 0.00 2.90
271 272 4.441792 GCTTGGTTGGTTTTTGACAGATT 58.558 39.130 0.00 0.00 0.00 2.40
272 273 4.875536 GCTTGGTTGGTTTTTGACAGATTT 59.124 37.500 0.00 0.00 0.00 2.17
273 274 5.220643 GCTTGGTTGGTTTTTGACAGATTTG 60.221 40.000 0.00 0.00 0.00 2.32
274 275 5.413309 TGGTTGGTTTTTGACAGATTTGT 57.587 34.783 0.00 0.00 41.18 2.83
275 276 5.799213 TGGTTGGTTTTTGACAGATTTGTT 58.201 33.333 0.00 0.00 37.76 2.83
276 277 6.234177 TGGTTGGTTTTTGACAGATTTGTTT 58.766 32.000 0.00 0.00 37.76 2.83
277 278 6.712547 TGGTTGGTTTTTGACAGATTTGTTTT 59.287 30.769 0.00 0.00 37.76 2.43
278 279 7.020602 GGTTGGTTTTTGACAGATTTGTTTTG 58.979 34.615 0.00 0.00 37.76 2.44
279 280 7.095017 GGTTGGTTTTTGACAGATTTGTTTTGA 60.095 33.333 0.00 0.00 37.76 2.69
280 281 7.357951 TGGTTTTTGACAGATTTGTTTTGAC 57.642 32.000 0.00 0.00 37.76 3.18
281 282 6.090088 TGGTTTTTGACAGATTTGTTTTGACG 59.910 34.615 0.00 0.00 37.76 4.35
282 283 6.309251 GGTTTTTGACAGATTTGTTTTGACGA 59.691 34.615 0.00 0.00 37.76 4.20
283 284 7.148722 GGTTTTTGACAGATTTGTTTTGACGAA 60.149 33.333 0.00 0.00 37.76 3.85
284 285 7.875316 TTTTGACAGATTTGTTTTGACGAAA 57.125 28.000 0.00 0.00 37.76 3.46
285 286 7.875316 TTTGACAGATTTGTTTTGACGAAAA 57.125 28.000 0.00 0.00 37.76 2.29
343 345 9.586150 CATTTATATCACGAATGAGTACAAAGC 57.414 33.333 0.00 0.00 38.57 3.51
347 349 3.987868 TCACGAATGAGTACAAAGCAGTC 59.012 43.478 0.00 0.00 0.00 3.51
348 350 3.123621 CACGAATGAGTACAAAGCAGTCC 59.876 47.826 0.00 0.00 0.00 3.85
366 368 2.038033 GTCCACCCTTACAAGCACACTA 59.962 50.000 0.00 0.00 0.00 2.74
371 373 4.336993 CACCCTTACAAGCACACTAAAACA 59.663 41.667 0.00 0.00 0.00 2.83
382 384 5.986135 AGCACACTAAAACACAAACACAAAA 59.014 32.000 0.00 0.00 0.00 2.44
420 422 8.117956 TCTAGAGTACCCTAAGACAACCATAAA 58.882 37.037 0.00 0.00 0.00 1.40
450 452 0.107508 CTCCGGAGCCATGTGTCATT 60.108 55.000 20.67 0.00 0.00 2.57
451 453 0.392863 TCCGGAGCCATGTGTCATTG 60.393 55.000 0.00 0.00 0.00 2.82
481 483 1.349026 CTTGAGAGAAGACCCCTGCAA 59.651 52.381 0.00 0.00 0.00 4.08
498 500 2.938451 TGCAATAGAAGGATCTGCAACG 59.062 45.455 1.43 0.00 37.10 4.10
511 514 0.808060 TGCAACGAGTCGCAAACAGA 60.808 50.000 13.59 0.00 34.59 3.41
519 522 3.308053 CGAGTCGCAAACAGATCATCATT 59.692 43.478 0.00 0.00 0.00 2.57
538 541 5.236282 TCATTTTCGACCACGGTACAATTA 58.764 37.500 0.00 0.00 40.21 1.40
541 544 1.820519 TCGACCACGGTACAATTAGCT 59.179 47.619 0.00 0.00 40.21 3.32
545 548 2.504175 ACCACGGTACAATTAGCTCCAT 59.496 45.455 0.00 0.00 0.00 3.41
607 610 2.224670 GGACACCAATCCAACACACCTA 60.225 50.000 0.00 0.00 38.77 3.08
616 619 2.502130 TCCAACACACCTACAACAGTCA 59.498 45.455 0.00 0.00 0.00 3.41
755 759 0.036671 CACCAGCATCAGCACAGAGA 60.037 55.000 0.00 0.00 45.49 3.10
809 814 5.221126 CCAACAAGGAAGAAGAAAGGTCTTG 60.221 44.000 0.00 0.00 41.54 3.02
822 827 0.393537 GGTCTTGGTCTCCCTGCATG 60.394 60.000 0.00 0.00 0.00 4.06
828 833 1.153289 GTCTCCCTGCATGCATCGT 60.153 57.895 22.97 0.00 0.00 3.73
831 836 3.274586 CCCTGCATGCATCGTCCG 61.275 66.667 22.97 8.20 0.00 4.79
832 837 2.202919 CCTGCATGCATCGTCCGA 60.203 61.111 22.97 0.00 0.00 4.55
833 838 2.242572 CCTGCATGCATCGTCCGAG 61.243 63.158 22.97 6.58 0.00 4.63
834 839 2.202919 TGCATGCATCGTCCGAGG 60.203 61.111 18.46 0.00 0.00 4.63
835 840 2.106938 GCATGCATCGTCCGAGGA 59.893 61.111 14.21 0.00 0.00 3.71
836 841 1.521457 GCATGCATCGTCCGAGGAA 60.521 57.895 14.21 0.00 0.00 3.36
837 842 1.089481 GCATGCATCGTCCGAGGAAA 61.089 55.000 14.21 0.00 0.00 3.13
838 843 1.368641 CATGCATCGTCCGAGGAAAA 58.631 50.000 5.44 0.00 0.00 2.29
839 844 1.328680 CATGCATCGTCCGAGGAAAAG 59.671 52.381 5.44 0.00 0.00 2.27
840 845 0.320374 TGCATCGTCCGAGGAAAAGT 59.680 50.000 5.44 0.00 0.00 2.66
841 846 0.721718 GCATCGTCCGAGGAAAAGTG 59.278 55.000 5.44 0.00 0.00 3.16
842 847 1.939838 GCATCGTCCGAGGAAAAGTGT 60.940 52.381 5.44 0.00 0.00 3.55
843 848 2.673043 GCATCGTCCGAGGAAAAGTGTA 60.673 50.000 5.44 0.00 0.00 2.90
844 849 2.712057 TCGTCCGAGGAAAAGTGTAC 57.288 50.000 0.00 0.00 0.00 2.90
845 850 1.955778 TCGTCCGAGGAAAAGTGTACA 59.044 47.619 0.00 0.00 0.00 2.90
846 851 2.056577 CGTCCGAGGAAAAGTGTACAC 58.943 52.381 18.56 18.56 0.00 2.90
847 852 2.544277 CGTCCGAGGAAAAGTGTACACA 60.544 50.000 27.06 0.00 0.00 3.72
848 853 3.660865 GTCCGAGGAAAAGTGTACACAT 58.339 45.455 27.06 13.66 0.00 3.21
849 854 4.616604 CGTCCGAGGAAAAGTGTACACATA 60.617 45.833 27.06 0.00 0.00 2.29
850 855 4.624452 GTCCGAGGAAAAGTGTACACATAC 59.376 45.833 27.06 13.69 0.00 2.39
851 856 4.281435 TCCGAGGAAAAGTGTACACATACA 59.719 41.667 27.06 0.00 39.06 2.29
852 857 5.046878 TCCGAGGAAAAGTGTACACATACAT 60.047 40.000 27.06 12.92 43.21 2.29
853 858 6.153170 TCCGAGGAAAAGTGTACACATACATA 59.847 38.462 27.06 0.89 43.21 2.29
854 859 6.255020 CCGAGGAAAAGTGTACACATACATAC 59.745 42.308 27.06 12.32 43.21 2.39
855 860 6.809689 CGAGGAAAAGTGTACACATACATACA 59.190 38.462 27.06 0.00 43.21 2.29
856 861 7.491372 CGAGGAAAAGTGTACACATACATACAT 59.509 37.037 27.06 9.51 43.21 2.29
857 862 9.811995 GAGGAAAAGTGTACACATACATACATA 57.188 33.333 27.06 0.00 43.21 2.29
858 863 9.595823 AGGAAAAGTGTACACATACATACATAC 57.404 33.333 27.06 4.37 43.21 2.39
859 864 9.373603 GGAAAAGTGTACACATACATACATACA 57.626 33.333 27.06 0.00 43.21 2.29
909 914 6.541111 AAAAGTATAATAAGCTGGCTACGC 57.459 37.500 0.00 0.00 0.00 4.42
910 915 4.866508 AGTATAATAAGCTGGCTACGCA 57.133 40.909 0.00 0.00 0.00 5.24
911 916 4.810790 AGTATAATAAGCTGGCTACGCAG 58.189 43.478 0.00 0.00 0.00 5.18
913 918 1.656652 AATAAGCTGGCTACGCAGTG 58.343 50.000 0.00 0.00 45.73 3.66
914 919 0.824109 ATAAGCTGGCTACGCAGTGA 59.176 50.000 0.00 0.00 45.73 3.41
915 920 0.173481 TAAGCTGGCTACGCAGTGAG 59.827 55.000 0.00 0.00 45.73 3.51
916 921 3.191539 GCTGGCTACGCAGTGAGC 61.192 66.667 0.00 0.00 45.73 4.26
917 922 2.575993 CTGGCTACGCAGTGAGCT 59.424 61.111 0.00 0.00 45.73 4.09
918 923 1.079543 CTGGCTACGCAGTGAGCTT 60.080 57.895 0.00 0.00 45.73 3.74
946 953 2.412323 CGCGCCACCTACCTACTCA 61.412 63.158 0.00 0.00 0.00 3.41
951 958 2.599677 GCCACCTACCTACTCAGCTAT 58.400 52.381 0.00 0.00 0.00 2.97
952 959 3.764218 GCCACCTACCTACTCAGCTATA 58.236 50.000 0.00 0.00 0.00 1.31
953 960 3.506844 GCCACCTACCTACTCAGCTATAC 59.493 52.174 0.00 0.00 0.00 1.47
961 968 6.125589 ACCTACTCAGCTATACCTACCTAC 57.874 45.833 0.00 0.00 0.00 3.18
962 969 5.014018 ACCTACTCAGCTATACCTACCTACC 59.986 48.000 0.00 0.00 0.00 3.18
967 974 2.713167 AGCTATACCTACCTACCGTCCA 59.287 50.000 0.00 0.00 0.00 4.02
1062 1070 4.323477 GCCACGCCTACCACCACA 62.323 66.667 0.00 0.00 0.00 4.17
1156 1164 2.122729 CCTCCACCTCCACCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
1160 1168 2.347490 CACCTCCACCTCCAACGG 59.653 66.667 0.00 0.00 0.00 4.44
1203 1211 4.324991 GGGTTCACGCCTCCGGTT 62.325 66.667 0.00 0.00 39.22 4.44
1328 1344 2.316067 TCTCCTCCAATCCTTCTCCAGA 59.684 50.000 0.00 0.00 0.00 3.86
1337 1353 0.179936 CCTTCTCCAGATGGGACTGC 59.820 60.000 0.00 0.00 42.15 4.40
1347 1363 2.575279 AGATGGGACTGCTCACAAGATT 59.425 45.455 0.00 0.00 31.91 2.40
1360 1376 6.039605 TGCTCACAAGATTCAAATCTGTTTCA 59.960 34.615 6.03 0.00 44.67 2.69
1372 1388 0.109781 CTGTTTCATTTCGCCCACCG 60.110 55.000 0.00 0.00 38.61 4.94
1552 1617 4.592942 AGAAAATTAGCTCAGCACCATCA 58.407 39.130 0.00 0.00 0.00 3.07
1666 1809 6.460781 CAGATACTCGGTATCACTAGTCTCT 58.539 44.000 19.59 3.72 45.03 3.10
1696 1839 2.519377 TACCCGCAGACCAATATTCG 57.481 50.000 0.00 0.00 0.00 3.34
1743 1886 4.476628 AATTCCCCATTTTTGCTAGCTG 57.523 40.909 17.23 5.04 0.00 4.24
1930 2090 1.977129 TGGGCTTTCTTTCAATTGGGG 59.023 47.619 5.42 0.00 0.00 4.96
1949 2109 6.549433 TGGGGTTCGTAACTTTACTATGAT 57.451 37.500 0.00 0.00 0.00 2.45
1976 2137 6.889301 ATTGATGGTCCTGCATATTTACAG 57.111 37.500 0.00 0.00 0.00 2.74
2056 2222 6.215121 TCTTTGCTTCAATTGTTGGTGTATG 58.785 36.000 5.13 0.00 0.00 2.39
2239 2423 8.657387 TTGATGTTTTATTTTATCCCTGTCCA 57.343 30.769 0.00 0.00 0.00 4.02
2382 2568 6.183360 GCTACAAGTTCCAGTTTTACGTATCC 60.183 42.308 0.00 0.00 0.00 2.59
2454 2641 8.616076 GCAGCAGAATCACCATTATATAATACC 58.384 37.037 7.65 0.00 0.00 2.73
2457 2644 8.275040 GCAGAATCACCATTATATAATACCCCT 58.725 37.037 7.65 0.00 0.00 4.79
2469 2664 3.529216 AATACCCCTTCCGTTCCAAAA 57.471 42.857 0.00 0.00 0.00 2.44
2470 2665 3.529216 ATACCCCTTCCGTTCCAAAAA 57.471 42.857 0.00 0.00 0.00 1.94
2471 2666 2.391926 ACCCCTTCCGTTCCAAAAAT 57.608 45.000 0.00 0.00 0.00 1.82
2472 2667 2.244695 ACCCCTTCCGTTCCAAAAATC 58.755 47.619 0.00 0.00 0.00 2.17
2473 2668 1.548719 CCCCTTCCGTTCCAAAAATCC 59.451 52.381 0.00 0.00 0.00 3.01
2474 2669 2.243810 CCCTTCCGTTCCAAAAATCCA 58.756 47.619 0.00 0.00 0.00 3.41
2475 2670 2.630580 CCCTTCCGTTCCAAAAATCCAA 59.369 45.455 0.00 0.00 0.00 3.53
2476 2671 3.260632 CCCTTCCGTTCCAAAAATCCAAT 59.739 43.478 0.00 0.00 0.00 3.16
2544 2739 3.568007 TGACCAAGTTTATGGACAAGTGC 59.432 43.478 0.00 0.00 43.54 4.40
2550 2745 6.238897 CCAAGTTTATGGACAAGTGCACTAAA 60.239 38.462 22.01 12.10 43.54 1.85
2641 2844 6.292150 TGGTGATGTACTGTTGTGAATGTTA 58.708 36.000 0.00 0.00 0.00 2.41
2692 2895 6.496571 ACTTAATGAAGATCGACTTAGGACG 58.503 40.000 0.00 0.00 39.13 4.79
2723 2926 6.424207 AGAACGTCTTAGATTTTGGAACAGAC 59.576 38.462 0.00 0.00 42.39 3.51
2742 2945 8.848474 AACAGACGGGATATTAATATTTCTGG 57.152 34.615 23.93 14.91 0.00 3.86
2768 2971 0.899717 TGTTTCCTGGCAAGATGGGC 60.900 55.000 0.00 0.00 0.00 5.36
2775 2980 1.345415 CTGGCAAGATGGGCTTTTGTT 59.655 47.619 0.00 0.00 33.60 2.83
2787 2992 5.858381 TGGGCTTTTGTTATATTGTTGCAA 58.142 33.333 0.00 0.00 0.00 4.08
2799 3004 2.547913 TGTTGCAATCTTATGCTGCG 57.452 45.000 0.59 0.00 46.54 5.18
2824 3029 6.288426 TGCAATGTGTTTTGTCATTCATTG 57.712 33.333 10.15 10.15 42.45 2.82
2917 3250 1.613437 CAGACATGGGGTGTTTTGTCC 59.387 52.381 0.00 0.00 42.36 4.02
2919 3252 1.886542 GACATGGGGTGTTTTGTCCTC 59.113 52.381 0.00 0.00 42.36 3.71
2926 3259 2.758423 GGGTGTTTTGTCCTCTTGTTGT 59.242 45.455 0.00 0.00 0.00 3.32
2942 3277 5.299028 TCTTGTTGTATTCTTCTGCTGCAAA 59.701 36.000 3.02 0.00 0.00 3.68
2945 3280 5.149977 GTTGTATTCTTCTGCTGCAAAGTC 58.850 41.667 17.71 11.05 0.00 3.01
2946 3281 3.433274 TGTATTCTTCTGCTGCAAAGTCG 59.567 43.478 17.71 2.85 0.00 4.18
3211 3558 3.093057 TCCTGTTAGCTCCTTCTCTGTC 58.907 50.000 0.00 0.00 0.00 3.51
3235 3582 6.831353 TCTTTGTTTTTCAGGTGATGGAACTA 59.169 34.615 0.00 0.00 0.00 2.24
3304 3704 9.482627 CTAAAAGTATAGGCTATGTTCAGAAGG 57.517 37.037 17.24 0.00 0.00 3.46
3438 3845 0.170339 AACTCCGCGGCTTATTTTGC 59.830 50.000 23.51 0.00 0.00 3.68
3582 3990 3.689161 CGTATTGTTTGCAGGGATCTTCA 59.311 43.478 0.00 0.00 0.00 3.02
3701 4110 3.482436 TGCCTTTTGTTCTCGTATGGTT 58.518 40.909 0.00 0.00 0.00 3.67
3813 4229 6.040247 CACTTGCTACACAGGTATTCGATAA 58.960 40.000 0.00 0.00 36.23 1.75
3912 4383 6.701841 CCATAAGCGTAGTATCTTGTTGACAT 59.298 38.462 0.00 0.00 0.00 3.06
3955 4463 9.696917 ATCAAACAACATTGGAATTAACTTCTC 57.303 29.630 0.00 0.00 34.08 2.87
4019 4527 6.972328 CGACAGGAAATTTTCAAGAAACTTGA 59.028 34.615 11.09 9.67 0.00 3.02
4066 6686 7.205992 TGTGATTTATGTTGTTGCTGCTAAAA 58.794 30.769 0.00 0.00 0.00 1.52
4069 6689 7.381948 TGATTTATGTTGTTGCTGCTAAAACTG 59.618 33.333 16.09 0.00 0.00 3.16
4094 6714 1.227263 CGCATGGCCTAGTAGCGTT 60.227 57.895 3.32 0.00 43.08 4.84
4167 6789 2.296190 GGGGTCAAAATGTTCGAAAGCT 59.704 45.455 0.00 0.00 0.00 3.74
4189 6811 5.759273 GCTCTGAGATCGTAGAGTACCTAAA 59.241 44.000 22.18 0.00 43.63 1.85
4241 6865 0.671251 GTCGCCCGAGATCTCTGAAT 59.329 55.000 20.26 0.00 0.00 2.57
4405 7041 2.340577 GTGTATTGTCGAAGTTCCGTCG 59.659 50.000 0.00 0.00 39.88 5.12
4423 7061 3.549423 CGTCGATTATCGCCCTTCAAGTA 60.549 47.826 10.02 0.00 40.21 2.24
4537 7189 2.290896 TGTCTTTGTTGGATAGCCTGGG 60.291 50.000 0.00 0.00 34.31 4.45
4585 7237 6.312399 TGCAAATAAGGTAGTGTGTGAAAG 57.688 37.500 0.00 0.00 0.00 2.62
4603 7255 6.017109 TGTGAAAGCAGAAATACTTGGAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
4651 7303 8.991243 AACAATGTCAAATGTCTATTGGAATG 57.009 30.769 0.00 0.00 34.07 2.67
4665 7317 4.906747 TTGGAATGGGGGAAATGAAAAG 57.093 40.909 0.00 0.00 0.00 2.27
4758 7410 4.397103 GGCATGACTTCACATTCTGATCAA 59.603 41.667 0.00 0.00 0.00 2.57
4760 7412 6.384224 GCATGACTTCACATTCTGATCAAAA 58.616 36.000 0.00 0.00 0.00 2.44
4761 7413 6.527023 GCATGACTTCACATTCTGATCAAAAG 59.473 38.462 0.00 0.00 0.00 2.27
4762 7414 7.591165 CATGACTTCACATTCTGATCAAAAGT 58.409 34.615 0.00 0.00 0.00 2.66
4763 7415 8.724229 CATGACTTCACATTCTGATCAAAAGTA 58.276 33.333 0.00 0.00 0.00 2.24
4764 7416 8.087982 TGACTTCACATTCTGATCAAAAGTAC 57.912 34.615 0.00 0.00 0.00 2.73
4765 7417 7.933577 TGACTTCACATTCTGATCAAAAGTACT 59.066 33.333 0.00 0.00 0.00 2.73
4766 7418 8.316640 ACTTCACATTCTGATCAAAAGTACTC 57.683 34.615 0.00 0.00 0.00 2.59
4767 7419 7.389053 ACTTCACATTCTGATCAAAAGTACTCC 59.611 37.037 0.00 0.00 0.00 3.85
4768 7420 6.173339 TCACATTCTGATCAAAAGTACTCCC 58.827 40.000 0.00 0.00 0.00 4.30
4769 7421 6.013379 TCACATTCTGATCAAAAGTACTCCCT 60.013 38.462 0.00 0.00 0.00 4.20
4770 7422 6.314896 CACATTCTGATCAAAAGTACTCCCTC 59.685 42.308 0.00 0.00 0.00 4.30
4771 7423 5.422214 TTCTGATCAAAAGTACTCCCTCC 57.578 43.478 0.00 0.00 0.00 4.30
4772 7424 3.447586 TCTGATCAAAAGTACTCCCTCCG 59.552 47.826 0.00 0.00 0.00 4.63
4773 7425 3.170717 TGATCAAAAGTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
4774 7426 3.194968 TGATCAAAAGTACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
4775 7427 1.897802 TCAAAAGTACTCCCTCCGTCC 59.102 52.381 0.00 0.00 0.00 4.79
4776 7428 1.066358 CAAAAGTACTCCCTCCGTCCC 60.066 57.143 0.00 0.00 0.00 4.46
4777 7429 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4778 7430 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4779 7431 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4780 7432 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4781 7433 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4782 7434 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4783 7435 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4784 7436 1.344763 CTCCCTCCGTCCCATAATGTC 59.655 57.143 0.00 0.00 0.00 3.06
4785 7437 1.062428 TCCCTCCGTCCCATAATGTCT 60.062 52.381 0.00 0.00 0.00 3.41
4786 7438 1.768870 CCCTCCGTCCCATAATGTCTT 59.231 52.381 0.00 0.00 0.00 3.01
4787 7439 2.969950 CCCTCCGTCCCATAATGTCTTA 59.030 50.000 0.00 0.00 0.00 2.10
4788 7440 3.244112 CCCTCCGTCCCATAATGTCTTAC 60.244 52.174 0.00 0.00 0.00 2.34
4789 7441 3.386726 CCTCCGTCCCATAATGTCTTACA 59.613 47.826 0.00 0.00 0.00 2.41
4790 7442 4.040461 CCTCCGTCCCATAATGTCTTACAT 59.960 45.833 0.00 0.00 41.31 2.29
4791 7443 5.245301 CCTCCGTCCCATAATGTCTTACATA 59.755 44.000 0.00 0.00 37.97 2.29
4792 7444 6.070767 CCTCCGTCCCATAATGTCTTACATAT 60.071 42.308 0.00 0.00 37.97 1.78
4793 7445 6.697395 TCCGTCCCATAATGTCTTACATATG 58.303 40.000 0.00 0.00 37.97 1.78
4794 7446 5.874810 CCGTCCCATAATGTCTTACATATGG 59.125 44.000 7.80 14.82 37.97 2.74
4795 7447 5.874810 CGTCCCATAATGTCTTACATATGGG 59.125 44.000 24.11 24.11 46.80 4.00
4798 7450 6.968131 CCATAATGTCTTACATATGGGACG 57.032 41.667 7.80 0.00 37.97 4.79
4799 7451 5.874810 CCATAATGTCTTACATATGGGACGG 59.125 44.000 7.80 5.31 37.97 4.79
4800 7452 6.295632 CCATAATGTCTTACATATGGGACGGA 60.296 42.308 7.80 3.05 37.97 4.69
4801 7453 4.873746 ATGTCTTACATATGGGACGGAG 57.126 45.455 7.80 0.00 36.99 4.63
4802 7454 2.963101 TGTCTTACATATGGGACGGAGG 59.037 50.000 7.80 0.00 0.00 4.30
4803 7455 2.299297 GTCTTACATATGGGACGGAGGG 59.701 54.545 7.80 0.00 0.00 4.30
4949 7601 5.858581 GTGAAATGTCAAGTGCCAAATACTC 59.141 40.000 0.00 0.00 34.87 2.59
5072 7753 0.951040 ACTAACTTGTGCGCCAGAGC 60.951 55.000 4.18 0.00 37.71 4.09
5167 7848 1.153449 GGCGTGAATCGGATGGTGA 60.153 57.895 0.00 0.00 40.26 4.02
5184 7865 1.405821 GTGAGGAGACTACATCCGGTG 59.594 57.143 0.00 1.37 44.43 4.94
5217 7898 0.530650 GCATCTCCCGATTCGAGCAA 60.531 55.000 7.83 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.917462 AGCTAAAAGTGGCAAAAGTGAAAT 58.083 33.333 0.00 0.00 32.62 2.17
4 5 5.580297 TCAAAAGCTAAAAGTGGCAAAAGTG 59.420 36.000 0.00 0.00 32.62 3.16
5 6 5.580691 GTCAAAAGCTAAAAGTGGCAAAAGT 59.419 36.000 0.00 0.00 32.62 2.66
6 7 5.580297 TGTCAAAAGCTAAAAGTGGCAAAAG 59.420 36.000 0.00 0.00 32.62 2.27
8 9 5.078411 TGTCAAAAGCTAAAAGTGGCAAA 57.922 34.783 0.00 0.00 32.62 3.68
9 10 4.727507 TGTCAAAAGCTAAAAGTGGCAA 57.272 36.364 0.00 0.00 32.62 4.52
10 11 4.727507 TTGTCAAAAGCTAAAAGTGGCA 57.272 36.364 0.00 0.00 32.62 4.92
11 12 9.237846 GATATATTGTCAAAAGCTAAAAGTGGC 57.762 33.333 0.00 0.00 0.00 5.01
19 20 9.787532 GCAAAAGTGATATATTGTCAAAAGCTA 57.212 29.630 0.00 0.00 0.00 3.32
20 21 7.761249 GGCAAAAGTGATATATTGTCAAAAGCT 59.239 33.333 0.00 0.00 0.00 3.74
21 22 7.545265 TGGCAAAAGTGATATATTGTCAAAAGC 59.455 33.333 0.00 0.00 34.74 3.51
22 23 8.984891 TGGCAAAAGTGATATATTGTCAAAAG 57.015 30.769 0.00 0.00 34.74 2.27
23 24 9.941325 AATGGCAAAAGTGATATATTGTCAAAA 57.059 25.926 0.00 0.00 40.35 2.44
24 25 9.941325 AAATGGCAAAAGTGATATATTGTCAAA 57.059 25.926 0.00 0.00 40.35 2.69
25 26 9.585099 GAAATGGCAAAAGTGATATATTGTCAA 57.415 29.630 0.00 0.00 40.35 3.18
26 27 8.747471 TGAAATGGCAAAAGTGATATATTGTCA 58.253 29.630 0.00 0.00 41.11 3.58
27 28 9.754382 ATGAAATGGCAAAAGTGATATATTGTC 57.246 29.630 0.00 0.00 0.00 3.18
28 29 9.537192 CATGAAATGGCAAAAGTGATATATTGT 57.463 29.630 0.00 0.00 41.79 2.71
46 47 5.823353 AGTTTTTGCTTTTGCCATGAAATG 58.177 33.333 0.00 0.00 46.87 2.32
47 48 6.453926 AAGTTTTTGCTTTTGCCATGAAAT 57.546 29.167 0.00 0.00 46.87 2.17
48 49 5.893897 AAGTTTTTGCTTTTGCCATGAAA 57.106 30.435 0.00 0.00 46.87 2.69
49 50 5.893897 AAAGTTTTTGCTTTTGCCATGAA 57.106 30.435 0.00 0.00 46.87 2.57
50 51 6.344500 TCTAAAGTTTTTGCTTTTGCCATGA 58.656 32.000 0.00 0.00 46.87 3.07
51 52 6.258507 ACTCTAAAGTTTTTGCTTTTGCCATG 59.741 34.615 0.00 0.00 37.19 3.66
52 53 6.258507 CACTCTAAAGTTTTTGCTTTTGCCAT 59.741 34.615 0.00 0.00 38.04 4.40
53 54 5.580297 CACTCTAAAGTTTTTGCTTTTGCCA 59.420 36.000 0.00 0.00 38.04 4.92
54 55 5.502382 GCACTCTAAAGTTTTTGCTTTTGCC 60.502 40.000 0.00 0.00 38.04 4.52
55 56 5.492854 GCACTCTAAAGTTTTTGCTTTTGC 58.507 37.500 0.00 0.00 39.22 3.68
56 57 5.580297 TGGCACTCTAAAGTTTTTGCTTTTG 59.420 36.000 0.00 0.00 39.22 2.44
57 58 5.729510 TGGCACTCTAAAGTTTTTGCTTTT 58.270 33.333 0.00 0.00 39.22 2.27
58 59 5.337578 TGGCACTCTAAAGTTTTTGCTTT 57.662 34.783 0.00 0.00 41.13 3.51
59 60 5.337578 TTGGCACTCTAAAGTTTTTGCTT 57.662 34.783 0.00 0.00 31.71 3.91
60 61 5.535753 ATTGGCACTCTAAAGTTTTTGCT 57.464 34.783 0.00 0.00 31.71 3.91
61 62 5.523552 ACAATTGGCACTCTAAAGTTTTTGC 59.476 36.000 10.83 0.00 31.71 3.68
62 63 8.641499 TTACAATTGGCACTCTAAAGTTTTTG 57.359 30.769 10.83 0.00 31.71 2.44
64 65 9.908152 GTATTACAATTGGCACTCTAAAGTTTT 57.092 29.630 10.83 0.00 31.71 2.43
65 66 9.073475 TGTATTACAATTGGCACTCTAAAGTTT 57.927 29.630 10.83 0.00 31.71 2.66
66 67 8.630054 TGTATTACAATTGGCACTCTAAAGTT 57.370 30.769 10.83 0.00 31.71 2.66
67 68 8.677300 CATGTATTACAATTGGCACTCTAAAGT 58.323 33.333 10.83 0.00 35.60 2.66
68 69 8.677300 ACATGTATTACAATTGGCACTCTAAAG 58.323 33.333 10.83 0.00 0.00 1.85
69 70 8.574251 ACATGTATTACAATTGGCACTCTAAA 57.426 30.769 10.83 0.00 0.00 1.85
70 71 7.826744 TGACATGTATTACAATTGGCACTCTAA 59.173 33.333 10.83 0.00 0.00 2.10
71 72 7.334858 TGACATGTATTACAATTGGCACTCTA 58.665 34.615 10.83 0.00 0.00 2.43
72 73 6.179756 TGACATGTATTACAATTGGCACTCT 58.820 36.000 10.83 0.00 0.00 3.24
73 74 6.435430 TGACATGTATTACAATTGGCACTC 57.565 37.500 10.83 0.00 0.00 3.51
74 75 6.832520 TTGACATGTATTACAATTGGCACT 57.167 33.333 10.83 0.00 26.77 4.40
75 76 7.063308 CCTTTTGACATGTATTACAATTGGCAC 59.937 37.037 10.83 2.54 26.77 5.01
76 77 7.095910 CCTTTTGACATGTATTACAATTGGCA 58.904 34.615 10.83 1.26 25.12 4.92
77 78 7.096551 ACCTTTTGACATGTATTACAATTGGC 58.903 34.615 10.83 0.00 0.00 4.52
82 83 9.787435 ACTCTTACCTTTTGACATGTATTACAA 57.213 29.630 0.00 0.00 0.00 2.41
83 84 9.214957 CACTCTTACCTTTTGACATGTATTACA 57.785 33.333 0.00 0.00 0.00 2.41
84 85 8.665685 CCACTCTTACCTTTTGACATGTATTAC 58.334 37.037 0.00 0.00 0.00 1.89
85 86 7.335924 GCCACTCTTACCTTTTGACATGTATTA 59.664 37.037 0.00 0.00 0.00 0.98
86 87 6.151144 GCCACTCTTACCTTTTGACATGTATT 59.849 38.462 0.00 0.00 0.00 1.89
87 88 5.648092 GCCACTCTTACCTTTTGACATGTAT 59.352 40.000 0.00 0.00 0.00 2.29
88 89 5.001232 GCCACTCTTACCTTTTGACATGTA 58.999 41.667 0.00 0.00 0.00 2.29
89 90 3.821033 GCCACTCTTACCTTTTGACATGT 59.179 43.478 0.00 0.00 0.00 3.21
90 91 3.820467 TGCCACTCTTACCTTTTGACATG 59.180 43.478 0.00 0.00 0.00 3.21
91 92 4.098914 TGCCACTCTTACCTTTTGACAT 57.901 40.909 0.00 0.00 0.00 3.06
92 93 3.569194 TGCCACTCTTACCTTTTGACA 57.431 42.857 0.00 0.00 0.00 3.58
93 94 4.911514 TTTGCCACTCTTACCTTTTGAC 57.088 40.909 0.00 0.00 0.00 3.18
94 95 4.953579 ACTTTTGCCACTCTTACCTTTTGA 59.046 37.500 0.00 0.00 0.00 2.69
95 96 5.043248 CACTTTTGCCACTCTTACCTTTTG 58.957 41.667 0.00 0.00 0.00 2.44
96 97 4.953579 TCACTTTTGCCACTCTTACCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
97 98 4.532834 TCACTTTTGCCACTCTTACCTTT 58.467 39.130 0.00 0.00 0.00 3.11
98 99 4.137543 CTCACTTTTGCCACTCTTACCTT 58.862 43.478 0.00 0.00 0.00 3.50
99 100 3.496870 CCTCACTTTTGCCACTCTTACCT 60.497 47.826 0.00 0.00 0.00 3.08
100 101 2.814336 CCTCACTTTTGCCACTCTTACC 59.186 50.000 0.00 0.00 0.00 2.85
101 102 3.251004 CACCTCACTTTTGCCACTCTTAC 59.749 47.826 0.00 0.00 0.00 2.34
102 103 3.118038 ACACCTCACTTTTGCCACTCTTA 60.118 43.478 0.00 0.00 0.00 2.10
103 104 2.301346 CACCTCACTTTTGCCACTCTT 58.699 47.619 0.00 0.00 0.00 2.85
104 105 1.212935 ACACCTCACTTTTGCCACTCT 59.787 47.619 0.00 0.00 0.00 3.24
105 106 1.604278 GACACCTCACTTTTGCCACTC 59.396 52.381 0.00 0.00 0.00 3.51
106 107 1.064758 TGACACCTCACTTTTGCCACT 60.065 47.619 0.00 0.00 0.00 4.00
107 108 1.388547 TGACACCTCACTTTTGCCAC 58.611 50.000 0.00 0.00 0.00 5.01
108 109 2.136298 TTGACACCTCACTTTTGCCA 57.864 45.000 0.00 0.00 0.00 4.92
109 110 3.733443 ATTTGACACCTCACTTTTGCC 57.267 42.857 0.00 0.00 0.00 4.52
110 111 4.936891 AGAATTTGACACCTCACTTTTGC 58.063 39.130 0.00 0.00 0.00 3.68
111 112 7.227512 ACTCTAGAATTTGACACCTCACTTTTG 59.772 37.037 0.00 0.00 0.00 2.44
112 113 7.227512 CACTCTAGAATTTGACACCTCACTTTT 59.772 37.037 0.00 0.00 0.00 2.27
113 114 6.708054 CACTCTAGAATTTGACACCTCACTTT 59.292 38.462 0.00 0.00 0.00 2.66
114 115 6.226787 CACTCTAGAATTTGACACCTCACTT 58.773 40.000 0.00 0.00 0.00 3.16
115 116 5.279708 CCACTCTAGAATTTGACACCTCACT 60.280 44.000 0.00 0.00 0.00 3.41
116 117 4.932200 CCACTCTAGAATTTGACACCTCAC 59.068 45.833 0.00 0.00 0.00 3.51
117 118 4.563580 GCCACTCTAGAATTTGACACCTCA 60.564 45.833 0.00 0.00 0.00 3.86
118 119 3.935828 GCCACTCTAGAATTTGACACCTC 59.064 47.826 0.00 0.00 0.00 3.85
119 120 3.327757 TGCCACTCTAGAATTTGACACCT 59.672 43.478 0.00 0.00 0.00 4.00
120 121 3.674997 TGCCACTCTAGAATTTGACACC 58.325 45.455 0.00 0.00 0.00 4.16
121 122 6.457528 GCTTATGCCACTCTAGAATTTGACAC 60.458 42.308 0.00 0.00 0.00 3.67
122 123 5.586243 GCTTATGCCACTCTAGAATTTGACA 59.414 40.000 0.00 0.00 0.00 3.58
123 124 5.586243 TGCTTATGCCACTCTAGAATTTGAC 59.414 40.000 0.00 0.00 38.71 3.18
124 125 5.744171 TGCTTATGCCACTCTAGAATTTGA 58.256 37.500 0.00 0.00 38.71 2.69
125 126 6.441093 TTGCTTATGCCACTCTAGAATTTG 57.559 37.500 0.00 0.00 38.71 2.32
126 127 7.466746 TTTTGCTTATGCCACTCTAGAATTT 57.533 32.000 0.00 0.00 38.71 1.82
127 128 7.417116 CCATTTTGCTTATGCCACTCTAGAATT 60.417 37.037 0.00 0.00 38.71 2.17
128 129 6.040166 CCATTTTGCTTATGCCACTCTAGAAT 59.960 38.462 0.00 0.00 38.71 2.40
129 130 5.357878 CCATTTTGCTTATGCCACTCTAGAA 59.642 40.000 0.00 0.00 38.71 2.10
130 131 4.883585 CCATTTTGCTTATGCCACTCTAGA 59.116 41.667 0.00 0.00 38.71 2.43
131 132 4.037208 CCCATTTTGCTTATGCCACTCTAG 59.963 45.833 0.00 0.00 38.71 2.43
132 133 3.953612 CCCATTTTGCTTATGCCACTCTA 59.046 43.478 0.00 0.00 38.71 2.43
133 134 2.762327 CCCATTTTGCTTATGCCACTCT 59.238 45.455 0.00 0.00 38.71 3.24
134 135 2.739609 GCCCATTTTGCTTATGCCACTC 60.740 50.000 0.00 0.00 38.71 3.51
135 136 1.207811 GCCCATTTTGCTTATGCCACT 59.792 47.619 0.00 0.00 38.71 4.00
136 137 1.066286 TGCCCATTTTGCTTATGCCAC 60.066 47.619 0.00 0.00 38.71 5.01
137 138 1.273759 TGCCCATTTTGCTTATGCCA 58.726 45.000 0.00 0.00 38.71 4.92
138 139 2.399916 TTGCCCATTTTGCTTATGCC 57.600 45.000 0.00 0.00 38.71 4.40
139 140 4.216042 AGTTTTTGCCCATTTTGCTTATGC 59.784 37.500 0.00 0.00 40.20 3.14
140 141 5.335035 CCAGTTTTTGCCCATTTTGCTTATG 60.335 40.000 0.00 0.00 0.00 1.90
141 142 4.761227 CCAGTTTTTGCCCATTTTGCTTAT 59.239 37.500 0.00 0.00 0.00 1.73
142 143 4.133078 CCAGTTTTTGCCCATTTTGCTTA 58.867 39.130 0.00 0.00 0.00 3.09
143 144 2.950975 CCAGTTTTTGCCCATTTTGCTT 59.049 40.909 0.00 0.00 0.00 3.91
144 145 2.172293 TCCAGTTTTTGCCCATTTTGCT 59.828 40.909 0.00 0.00 0.00 3.91
145 146 2.549329 CTCCAGTTTTTGCCCATTTTGC 59.451 45.455 0.00 0.00 0.00 3.68
146 147 3.560896 CACTCCAGTTTTTGCCCATTTTG 59.439 43.478 0.00 0.00 0.00 2.44
147 148 3.433456 CCACTCCAGTTTTTGCCCATTTT 60.433 43.478 0.00 0.00 0.00 1.82
148 149 2.104622 CCACTCCAGTTTTTGCCCATTT 59.895 45.455 0.00 0.00 0.00 2.32
149 150 1.693606 CCACTCCAGTTTTTGCCCATT 59.306 47.619 0.00 0.00 0.00 3.16
150 151 1.341080 CCACTCCAGTTTTTGCCCAT 58.659 50.000 0.00 0.00 0.00 4.00
151 152 1.398958 GCCACTCCAGTTTTTGCCCA 61.399 55.000 0.00 0.00 0.00 5.36
152 153 1.367471 GCCACTCCAGTTTTTGCCC 59.633 57.895 0.00 0.00 0.00 5.36
153 154 0.463620 TTGCCACTCCAGTTTTTGCC 59.536 50.000 0.00 0.00 0.00 4.52
154 155 2.307934 TTTGCCACTCCAGTTTTTGC 57.692 45.000 0.00 0.00 0.00 3.68
155 156 3.999663 TGTTTTTGCCACTCCAGTTTTTG 59.000 39.130 0.00 0.00 0.00 2.44
156 157 4.278975 TGTTTTTGCCACTCCAGTTTTT 57.721 36.364 0.00 0.00 0.00 1.94
157 158 3.971245 TGTTTTTGCCACTCCAGTTTT 57.029 38.095 0.00 0.00 0.00 2.43
158 159 3.971245 TTGTTTTTGCCACTCCAGTTT 57.029 38.095 0.00 0.00 0.00 2.66
159 160 3.260632 ACTTTGTTTTTGCCACTCCAGTT 59.739 39.130 0.00 0.00 0.00 3.16
160 161 2.831526 ACTTTGTTTTTGCCACTCCAGT 59.168 40.909 0.00 0.00 0.00 4.00
161 162 3.525268 ACTTTGTTTTTGCCACTCCAG 57.475 42.857 0.00 0.00 0.00 3.86
162 163 3.594134 CAACTTTGTTTTTGCCACTCCA 58.406 40.909 0.00 0.00 0.00 3.86
163 164 2.935849 CCAACTTTGTTTTTGCCACTCC 59.064 45.455 0.00 0.00 0.00 3.85
164 165 2.351418 GCCAACTTTGTTTTTGCCACTC 59.649 45.455 0.00 0.00 0.00 3.51
165 166 2.355197 GCCAACTTTGTTTTTGCCACT 58.645 42.857 0.00 0.00 0.00 4.00
166 167 1.061857 CGCCAACTTTGTTTTTGCCAC 59.938 47.619 0.00 0.00 0.00 5.01
167 168 1.363744 CGCCAACTTTGTTTTTGCCA 58.636 45.000 0.00 0.00 0.00 4.92
168 169 0.655208 CCGCCAACTTTGTTTTTGCC 59.345 50.000 0.00 0.00 0.00 4.52
169 170 0.655208 CCCGCCAACTTTGTTTTTGC 59.345 50.000 0.00 0.00 0.00 3.68
170 171 0.655208 GCCCGCCAACTTTGTTTTTG 59.345 50.000 0.00 0.00 0.00 2.44
171 172 0.808060 CGCCCGCCAACTTTGTTTTT 60.808 50.000 0.00 0.00 0.00 1.94
172 173 1.227118 CGCCCGCCAACTTTGTTTT 60.227 52.632 0.00 0.00 0.00 2.43
173 174 2.415426 CGCCCGCCAACTTTGTTT 59.585 55.556 0.00 0.00 0.00 2.83
174 175 4.279043 GCGCCCGCCAACTTTGTT 62.279 61.111 0.00 0.00 34.56 2.83
198 199 2.281414 TGACACATGCCCACGTGG 60.281 61.111 28.26 28.26 37.45 4.94
199 200 1.568612 GACTGACACATGCCCACGTG 61.569 60.000 9.08 9.08 39.10 4.49
200 201 1.301716 GACTGACACATGCCCACGT 60.302 57.895 0.00 0.00 0.00 4.49
201 202 2.382746 CGACTGACACATGCCCACG 61.383 63.158 0.00 0.00 0.00 4.94
202 203 2.034879 CCGACTGACACATGCCCAC 61.035 63.158 0.00 0.00 0.00 4.61
203 204 2.347114 CCGACTGACACATGCCCA 59.653 61.111 0.00 0.00 0.00 5.36
204 205 2.436646 CCCGACTGACACATGCCC 60.437 66.667 0.00 0.00 0.00 5.36
205 206 1.448540 CTCCCGACTGACACATGCC 60.449 63.158 0.00 0.00 0.00 4.40
206 207 0.459237 CTCTCCCGACTGACACATGC 60.459 60.000 0.00 0.00 0.00 4.06
207 208 0.174389 CCTCTCCCGACTGACACATG 59.826 60.000 0.00 0.00 0.00 3.21
208 209 1.608717 GCCTCTCCCGACTGACACAT 61.609 60.000 0.00 0.00 0.00 3.21
209 210 2.276116 GCCTCTCCCGACTGACACA 61.276 63.158 0.00 0.00 0.00 3.72
210 211 2.219325 CTGCCTCTCCCGACTGACAC 62.219 65.000 0.00 0.00 0.00 3.67
211 212 1.979155 CTGCCTCTCCCGACTGACA 60.979 63.158 0.00 0.00 0.00 3.58
212 213 1.536943 AACTGCCTCTCCCGACTGAC 61.537 60.000 0.00 0.00 0.00 3.51
213 214 1.228894 AACTGCCTCTCCCGACTGA 60.229 57.895 0.00 0.00 0.00 3.41
214 215 1.079543 CAACTGCCTCTCCCGACTG 60.080 63.158 0.00 0.00 0.00 3.51
215 216 0.616111 ATCAACTGCCTCTCCCGACT 60.616 55.000 0.00 0.00 0.00 4.18
216 217 0.460987 CATCAACTGCCTCTCCCGAC 60.461 60.000 0.00 0.00 0.00 4.79
217 218 0.614697 TCATCAACTGCCTCTCCCGA 60.615 55.000 0.00 0.00 0.00 5.14
218 219 0.179089 CTCATCAACTGCCTCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
219 220 1.138661 CTCTCATCAACTGCCTCTCCC 59.861 57.143 0.00 0.00 0.00 4.30
220 221 2.101249 CTCTCTCATCAACTGCCTCTCC 59.899 54.545 0.00 0.00 0.00 3.71
221 222 3.023119 TCTCTCTCATCAACTGCCTCTC 58.977 50.000 0.00 0.00 0.00 3.20
222 223 3.025978 CTCTCTCTCATCAACTGCCTCT 58.974 50.000 0.00 0.00 0.00 3.69
223 224 3.023119 TCTCTCTCTCATCAACTGCCTC 58.977 50.000 0.00 0.00 0.00 4.70
224 225 3.098774 TCTCTCTCTCATCAACTGCCT 57.901 47.619 0.00 0.00 0.00 4.75
225 226 3.195396 ACTTCTCTCTCTCATCAACTGCC 59.805 47.826 0.00 0.00 0.00 4.85
226 227 4.423732 GACTTCTCTCTCTCATCAACTGC 58.576 47.826 0.00 0.00 0.00 4.40
227 228 4.661125 CGACTTCTCTCTCTCATCAACTG 58.339 47.826 0.00 0.00 0.00 3.16
228 229 3.128589 GCGACTTCTCTCTCTCATCAACT 59.871 47.826 0.00 0.00 0.00 3.16
229 230 3.128589 AGCGACTTCTCTCTCTCATCAAC 59.871 47.826 0.00 0.00 0.00 3.18
230 231 3.351740 AGCGACTTCTCTCTCTCATCAA 58.648 45.455 0.00 0.00 0.00 2.57
231 232 2.997980 AGCGACTTCTCTCTCTCATCA 58.002 47.619 0.00 0.00 0.00 3.07
232 233 3.489059 CCAAGCGACTTCTCTCTCTCATC 60.489 52.174 0.00 0.00 0.00 2.92
233 234 2.426738 CCAAGCGACTTCTCTCTCTCAT 59.573 50.000 0.00 0.00 0.00 2.90
234 235 1.815613 CCAAGCGACTTCTCTCTCTCA 59.184 52.381 0.00 0.00 0.00 3.27
235 236 1.816224 ACCAAGCGACTTCTCTCTCTC 59.184 52.381 0.00 0.00 0.00 3.20
236 237 1.917872 ACCAAGCGACTTCTCTCTCT 58.082 50.000 0.00 0.00 0.00 3.10
237 238 2.333014 CAACCAAGCGACTTCTCTCTC 58.667 52.381 0.00 0.00 0.00 3.20
238 239 1.001406 CCAACCAAGCGACTTCTCTCT 59.999 52.381 0.00 0.00 0.00 3.10
239 240 1.270358 ACCAACCAAGCGACTTCTCTC 60.270 52.381 0.00 0.00 0.00 3.20
240 241 0.759346 ACCAACCAAGCGACTTCTCT 59.241 50.000 0.00 0.00 0.00 3.10
241 242 1.594331 AACCAACCAAGCGACTTCTC 58.406 50.000 0.00 0.00 0.00 2.87
242 243 2.052782 AAACCAACCAAGCGACTTCT 57.947 45.000 0.00 0.00 0.00 2.85
243 244 2.857748 CAAAAACCAACCAAGCGACTTC 59.142 45.455 0.00 0.00 0.00 3.01
244 245 2.494073 TCAAAAACCAACCAAGCGACTT 59.506 40.909 0.00 0.00 0.00 3.01
245 246 2.096248 TCAAAAACCAACCAAGCGACT 58.904 42.857 0.00 0.00 0.00 4.18
246 247 2.190161 GTCAAAAACCAACCAAGCGAC 58.810 47.619 0.00 0.00 0.00 5.19
247 248 1.819288 TGTCAAAAACCAACCAAGCGA 59.181 42.857 0.00 0.00 0.00 4.93
248 249 2.159310 TCTGTCAAAAACCAACCAAGCG 60.159 45.455 0.00 0.00 0.00 4.68
249 250 3.518634 TCTGTCAAAAACCAACCAAGC 57.481 42.857 0.00 0.00 0.00 4.01
250 251 5.874261 ACAAATCTGTCAAAAACCAACCAAG 59.126 36.000 0.00 0.00 0.00 3.61
251 252 5.799213 ACAAATCTGTCAAAAACCAACCAA 58.201 33.333 0.00 0.00 0.00 3.67
252 253 5.413309 ACAAATCTGTCAAAAACCAACCA 57.587 34.783 0.00 0.00 0.00 3.67
253 254 6.735678 AAACAAATCTGTCAAAAACCAACC 57.264 33.333 0.00 0.00 33.45 3.77
254 255 7.744276 GTCAAAACAAATCTGTCAAAAACCAAC 59.256 33.333 0.00 0.00 33.45 3.77
255 256 7.359598 CGTCAAAACAAATCTGTCAAAAACCAA 60.360 33.333 0.00 0.00 33.45 3.67
256 257 6.090088 CGTCAAAACAAATCTGTCAAAAACCA 59.910 34.615 0.00 0.00 33.45 3.67
257 258 6.309251 TCGTCAAAACAAATCTGTCAAAAACC 59.691 34.615 0.00 0.00 33.45 3.27
258 259 7.271936 TCGTCAAAACAAATCTGTCAAAAAC 57.728 32.000 0.00 0.00 33.45 2.43
259 260 7.875316 TTCGTCAAAACAAATCTGTCAAAAA 57.125 28.000 0.00 0.00 33.45 1.94
260 261 7.875316 TTTCGTCAAAACAAATCTGTCAAAA 57.125 28.000 0.00 0.00 33.45 2.44
261 262 7.875316 TTTTCGTCAAAACAAATCTGTCAAA 57.125 28.000 0.00 0.00 33.45 2.69
321 323 7.489160 ACTGCTTTGTACTCATTCGTGATATA 58.511 34.615 0.00 0.00 0.00 0.86
333 335 1.348036 AGGGTGGACTGCTTTGTACTC 59.652 52.381 0.00 0.00 0.00 2.59
343 345 1.202758 TGTGCTTGTAAGGGTGGACTG 60.203 52.381 0.00 0.00 0.00 3.51
347 349 2.851263 TAGTGTGCTTGTAAGGGTGG 57.149 50.000 0.00 0.00 0.00 4.61
348 350 4.336993 TGTTTTAGTGTGCTTGTAAGGGTG 59.663 41.667 0.00 0.00 0.00 4.61
366 368 6.226787 TCATGGTCTTTTGTGTTTGTGTTTT 58.773 32.000 0.00 0.00 0.00 2.43
371 373 5.398603 TGTTCATGGTCTTTTGTGTTTGT 57.601 34.783 0.00 0.00 0.00 2.83
382 384 4.896482 GGGTACTCTAGATGTTCATGGTCT 59.104 45.833 0.00 0.00 0.00 3.85
420 422 1.208293 GGCTCCGGAGATCTTCTTGTT 59.792 52.381 35.69 0.00 0.00 2.83
450 452 4.221703 GTCTTCTCTCAAGATTCAGGGACA 59.778 45.833 0.00 0.00 0.00 4.02
451 453 4.382577 GGTCTTCTCTCAAGATTCAGGGAC 60.383 50.000 0.00 0.00 0.00 4.46
481 483 3.243234 CGACTCGTTGCAGATCCTTCTAT 60.243 47.826 0.00 0.00 0.00 1.98
498 500 4.871993 AATGATGATCTGTTTGCGACTC 57.128 40.909 0.00 0.00 0.00 3.36
511 514 2.985896 ACCGTGGTCGAAAATGATGAT 58.014 42.857 0.00 0.00 39.71 2.45
519 522 2.995258 GCTAATTGTACCGTGGTCGAAA 59.005 45.455 0.00 0.00 39.71 3.46
545 548 1.774254 TCAAGAAAGGAGGAACCAGCA 59.226 47.619 0.00 0.00 42.04 4.41
550 553 3.142174 CTGGTGTCAAGAAAGGAGGAAC 58.858 50.000 0.00 0.00 0.00 3.62
607 610 2.479566 AAGATGGCGATGACTGTTGT 57.520 45.000 0.00 0.00 0.00 3.32
755 759 2.620585 GTTGCTGCTGTTCTTCTCCTTT 59.379 45.455 0.00 0.00 0.00 3.11
822 827 0.721718 CACTTTTCCTCGGACGATGC 59.278 55.000 0.00 0.00 0.00 3.91
828 833 4.281435 TGTATGTGTACACTTTTCCTCGGA 59.719 41.667 25.60 2.74 35.94 4.55
831 836 8.718102 ATGTATGTATGTGTACACTTTTCCTC 57.282 34.615 25.60 12.33 43.21 3.71
832 837 9.595823 GTATGTATGTATGTGTACACTTTTCCT 57.404 33.333 25.60 11.73 43.21 3.36
833 838 9.373603 TGTATGTATGTATGTGTACACTTTTCC 57.626 33.333 25.60 11.78 43.21 3.13
901 906 3.944551 GTGAAGCTCACTGCGTAGCCA 62.945 57.143 0.00 0.00 46.17 4.75
902 907 1.355066 GTGAAGCTCACTGCGTAGCC 61.355 60.000 0.00 0.00 46.17 3.93
903 908 2.074124 GTGAAGCTCACTGCGTAGC 58.926 57.895 0.00 0.00 46.66 3.58
912 917 2.650116 GCGAGGGGAGTGAAGCTCA 61.650 63.158 0.00 0.00 45.88 4.26
913 918 2.185608 GCGAGGGGAGTGAAGCTC 59.814 66.667 0.00 0.00 43.39 4.09
914 919 3.764466 CGCGAGGGGAGTGAAGCT 61.764 66.667 0.00 0.00 0.00 3.74
916 921 4.821589 GGCGCGAGGGGAGTGAAG 62.822 72.222 12.10 0.00 0.00 3.02
935 942 5.251237 AGGTAGGTATAGCTGAGTAGGTAGG 59.749 48.000 14.72 0.00 39.98 3.18
946 953 2.713167 TGGACGGTAGGTAGGTATAGCT 59.287 50.000 9.78 9.78 42.34 3.32
951 958 0.921896 AGCTGGACGGTAGGTAGGTA 59.078 55.000 0.00 0.00 0.00 3.08
952 959 0.395448 GAGCTGGACGGTAGGTAGGT 60.395 60.000 0.00 0.00 0.00 3.08
953 960 0.106619 AGAGCTGGACGGTAGGTAGG 60.107 60.000 0.00 0.00 0.00 3.18
961 968 4.504916 CGGAGCAGAGCTGGACGG 62.505 72.222 0.00 0.00 39.88 4.79
1042 1050 3.762247 GGTGGTAGGCGTGGCGTA 61.762 66.667 0.00 0.00 0.00 4.42
1203 1211 3.089874 ATAGCCAAGCGCCTGGGA 61.090 61.111 25.91 0.42 38.78 4.37
1328 1344 2.306805 TGAATCTTGTGAGCAGTCCCAT 59.693 45.455 0.00 0.00 0.00 4.00
1337 1353 9.472361 AAATGAAACAGATTTGAATCTTGTGAG 57.528 29.630 3.54 0.00 42.96 3.51
1347 1363 3.571828 TGGGCGAAATGAAACAGATTTGA 59.428 39.130 0.00 0.00 0.00 2.69
1360 1376 2.188912 CCAATTCGGTGGGCGAAAT 58.811 52.632 0.00 0.00 34.77 2.17
1372 1388 0.038166 TCCACTCTGGTGCCCAATTC 59.962 55.000 0.00 0.00 41.75 2.17
1378 1394 3.165606 CAGATTCCACTCTGGTGCC 57.834 57.895 0.00 0.00 41.75 5.01
1385 1401 4.487714 TGAATACACCCAGATTCCACTC 57.512 45.455 0.00 0.00 32.13 3.51
1552 1617 3.848272 ACATGAATTTCCAATTCGCGT 57.152 38.095 5.77 2.37 0.00 6.01
1666 1809 1.164411 CTGCGGGTATTTTGTCAGCA 58.836 50.000 0.00 0.00 0.00 4.41
1696 1839 6.601217 AGAGAAATTCACCTAGAAATTCCAGC 59.399 38.462 0.00 0.00 43.90 4.85
1789 1932 8.767944 CAAATGTATTTGCGTAATACTCCTTC 57.232 34.615 17.35 0.00 45.82 3.46
1949 2109 9.194972 TGTAAATATGCAGGACCATCAATTTTA 57.805 29.630 0.00 0.00 0.00 1.52
2239 2423 1.069978 CGAAATGTTGGCCCCTTTTGT 59.930 47.619 0.00 0.00 0.00 2.83
2454 2641 2.243810 TGGATTTTTGGAACGGAAGGG 58.756 47.619 0.00 0.00 0.00 3.95
2457 2644 6.597832 ACATATTGGATTTTTGGAACGGAA 57.402 33.333 0.00 0.00 0.00 4.30
2469 2664 9.533831 AACCAAGAACTTCTTACATATTGGATT 57.466 29.630 3.64 0.00 38.55 3.01
2470 2665 9.533831 AAACCAAGAACTTCTTACATATTGGAT 57.466 29.630 3.64 0.00 38.55 3.41
2471 2666 8.792633 CAAACCAAGAACTTCTTACATATTGGA 58.207 33.333 3.64 0.00 38.55 3.53
2472 2667 8.576442 ACAAACCAAGAACTTCTTACATATTGG 58.424 33.333 3.64 3.25 41.33 3.16
2473 2668 9.398170 CACAAACCAAGAACTTCTTACATATTG 57.602 33.333 3.64 7.93 33.78 1.90
2474 2669 8.082242 GCACAAACCAAGAACTTCTTACATATT 58.918 33.333 3.64 0.00 33.78 1.28
2475 2670 7.448469 AGCACAAACCAAGAACTTCTTACATAT 59.552 33.333 3.64 0.00 33.78 1.78
2476 2671 6.770785 AGCACAAACCAAGAACTTCTTACATA 59.229 34.615 3.64 0.00 33.78 2.29
2544 2739 8.141268 ACTAATTTGGTGTTGTGGATTTTAGTG 58.859 33.333 0.00 0.00 0.00 2.74
2550 2745 7.589958 TTACACTAATTTGGTGTTGTGGATT 57.410 32.000 21.41 0.00 44.25 3.01
2656 2859 8.717821 CGATCTTCATTAAGTTTGACCAAAGTA 58.282 33.333 3.54 0.00 33.87 2.24
2672 2875 5.578005 TTCGTCCTAAGTCGATCTTCATT 57.422 39.130 3.94 0.00 37.56 2.57
2692 2895 6.812160 TCCAAAATCTAAGACGTTCTAGCTTC 59.188 38.462 0.00 0.00 0.00 3.86
2723 2926 9.726438 AAGAAGTCCAGAAATATTAATATCCCG 57.274 33.333 8.42 0.00 0.00 5.14
2742 2945 3.214328 TCTTGCCAGGAAACAAGAAGTC 58.786 45.455 5.71 0.00 46.89 3.01
2775 2980 6.204495 TCGCAGCATAAGATTGCAACAATATA 59.796 34.615 0.00 0.00 45.23 0.86
2787 2992 2.882761 ACATTGCATCGCAGCATAAGAT 59.117 40.909 2.48 0.00 45.19 2.40
2799 3004 6.715344 ATGAATGACAAAACACATTGCATC 57.285 33.333 0.00 0.00 36.94 3.91
2845 3050 4.757149 GCAGAAAACTGTAACAGAGGACAT 59.243 41.667 0.00 0.00 35.18 3.06
2850 3055 3.561310 TGCAGCAGAAAACTGTAACAGAG 59.439 43.478 0.00 0.00 37.47 3.35
2917 3250 4.453478 TGCAGCAGAAGAATACAACAAGAG 59.547 41.667 0.00 0.00 0.00 2.85
2919 3252 4.754372 TGCAGCAGAAGAATACAACAAG 57.246 40.909 0.00 0.00 0.00 3.16
2926 3259 3.664107 ACGACTTTGCAGCAGAAGAATA 58.336 40.909 18.55 0.00 0.00 1.75
2942 3277 6.649141 TGTCTTACTAATGAATGCAAACGACT 59.351 34.615 0.00 0.00 0.00 4.18
2945 3280 8.064222 CCTATGTCTTACTAATGAATGCAAACG 58.936 37.037 0.00 0.00 0.00 3.60
2946 3281 9.109393 TCCTATGTCTTACTAATGAATGCAAAC 57.891 33.333 0.00 0.00 0.00 2.93
3211 3558 5.906073 AGTTCCATCACCTGAAAAACAAAG 58.094 37.500 0.00 0.00 0.00 2.77
3304 3704 9.262358 GATCACCTATAAGTCAAAGGTAATGTC 57.738 37.037 0.00 0.00 41.75 3.06
3438 3845 2.119801 AGCCCTGCTGTTATTGTCTG 57.880 50.000 0.00 0.00 37.57 3.51
3561 3968 5.841957 ATGAAGATCCCTGCAAACAATAC 57.158 39.130 0.00 0.00 30.17 1.89
3582 3990 4.278419 GGTGGAAGCTTTGAAACAGTGTAT 59.722 41.667 0.00 0.00 0.00 2.29
3701 4110 1.053835 TGTGCTGGTCAGGTTCTGGA 61.054 55.000 0.00 0.00 31.51 3.86
3813 4229 4.036734 ACAGATGCGTTGTGAAGTTTTCAT 59.963 37.500 0.00 0.00 42.47 2.57
4167 6789 6.289834 CCTTTAGGTACTCTACGATCTCAGA 58.710 44.000 0.00 0.00 41.75 3.27
4189 6811 5.604231 TGAGGATAGAGTGAATATGTTGCCT 59.396 40.000 0.00 0.00 0.00 4.75
4405 7041 5.758296 TCACAATACTTGAAGGGCGATAATC 59.242 40.000 0.00 0.00 0.00 1.75
4409 7045 3.627395 TCACAATACTTGAAGGGCGAT 57.373 42.857 0.00 0.00 0.00 4.58
4423 7061 4.717877 TCATCTCCACACAGTTTCACAAT 58.282 39.130 0.00 0.00 0.00 2.71
4498 7150 8.097038 ACAAAGACACATGATAACAGACAGTAT 58.903 33.333 0.00 0.00 0.00 2.12
4501 7153 6.791887 ACAAAGACACATGATAACAGACAG 57.208 37.500 0.00 0.00 0.00 3.51
4505 7157 6.558771 TCCAACAAAGACACATGATAACAG 57.441 37.500 0.00 0.00 0.00 3.16
4585 7237 4.666237 GCATGTCTTCCAAGTATTTCTGC 58.334 43.478 0.00 0.00 0.00 4.26
4603 7255 7.540400 TGTTCTTTGTAATTTATGAACCGCATG 59.460 33.333 0.00 0.00 37.87 4.06
4651 7303 5.654603 ACGTTTATCTTTTCATTTCCCCC 57.345 39.130 0.00 0.00 0.00 5.40
4758 7410 0.115745 TGGGACGGAGGGAGTACTTT 59.884 55.000 0.00 0.00 0.00 2.66
4760 7412 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
4761 7413 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
4762 7414 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4763 7415 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
4764 7416 1.344763 GACATTATGGGACGGAGGGAG 59.655 57.143 0.00 0.00 0.00 4.30
4765 7417 1.062428 AGACATTATGGGACGGAGGGA 60.062 52.381 0.00 0.00 0.00 4.20
4766 7418 1.424638 AGACATTATGGGACGGAGGG 58.575 55.000 0.00 0.00 0.00 4.30
4767 7419 3.386726 TGTAAGACATTATGGGACGGAGG 59.613 47.826 0.00 0.00 0.00 4.30
4768 7420 4.665833 TGTAAGACATTATGGGACGGAG 57.334 45.455 0.00 0.00 0.00 4.63
4769 7421 6.295632 CCATATGTAAGACATTATGGGACGGA 60.296 42.308 1.24 0.00 39.88 4.69
4770 7422 5.874810 CCATATGTAAGACATTATGGGACGG 59.125 44.000 1.24 0.00 39.88 4.79
4771 7423 6.968131 CCATATGTAAGACATTATGGGACG 57.032 41.667 1.24 0.00 39.88 4.79
4774 7426 5.874810 CGTCCCATATGTAAGACATTATGGG 59.125 44.000 24.00 24.00 46.80 4.00
4775 7427 5.874810 CCGTCCCATATGTAAGACATTATGG 59.125 44.000 14.52 14.64 39.88 2.74
4776 7428 6.697395 TCCGTCCCATATGTAAGACATTATG 58.303 40.000 14.52 0.00 39.88 1.90
4777 7429 6.070767 CCTCCGTCCCATATGTAAGACATTAT 60.071 42.308 14.52 0.00 39.88 1.28
4778 7430 5.245301 CCTCCGTCCCATATGTAAGACATTA 59.755 44.000 14.52 2.99 39.88 1.90
4779 7431 4.040461 CCTCCGTCCCATATGTAAGACATT 59.960 45.833 14.52 0.00 39.88 2.71
4780 7432 3.578716 CCTCCGTCCCATATGTAAGACAT 59.421 47.826 14.52 0.00 42.35 3.06
4781 7433 2.963101 CCTCCGTCCCATATGTAAGACA 59.037 50.000 14.52 0.00 0.00 3.41
4782 7434 2.299297 CCCTCCGTCCCATATGTAAGAC 59.701 54.545 1.24 5.03 0.00 3.01
4783 7435 2.178325 TCCCTCCGTCCCATATGTAAGA 59.822 50.000 1.24 0.00 0.00 2.10
4784 7436 2.563179 CTCCCTCCGTCCCATATGTAAG 59.437 54.545 1.24 0.00 0.00 2.34
4785 7437 2.090943 ACTCCCTCCGTCCCATATGTAA 60.091 50.000 1.24 0.00 0.00 2.41
4786 7438 1.502039 ACTCCCTCCGTCCCATATGTA 59.498 52.381 1.24 0.00 0.00 2.29
4787 7439 0.264955 ACTCCCTCCGTCCCATATGT 59.735 55.000 1.24 0.00 0.00 2.29
4788 7440 2.304221 TACTCCCTCCGTCCCATATG 57.696 55.000 0.00 0.00 0.00 1.78
4789 7441 3.562108 AATACTCCCTCCGTCCCATAT 57.438 47.619 0.00 0.00 0.00 1.78
4790 7442 2.969950 CAAATACTCCCTCCGTCCCATA 59.030 50.000 0.00 0.00 0.00 2.74
4791 7443 1.768870 CAAATACTCCCTCCGTCCCAT 59.231 52.381 0.00 0.00 0.00 4.00
4792 7444 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
4793 7445 0.468648 CCAAATACTCCCTCCGTCCC 59.531 60.000 0.00 0.00 0.00 4.46
4794 7446 0.179054 GCCAAATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
4795 7447 0.539986 TGCCAAATACTCCCTCCGTC 59.460 55.000 0.00 0.00 0.00 4.79
4796 7448 0.988832 TTGCCAAATACTCCCTCCGT 59.011 50.000 0.00 0.00 0.00 4.69
4797 7449 1.743394 GTTTGCCAAATACTCCCTCCG 59.257 52.381 0.00 0.00 0.00 4.63
4798 7450 2.802719 TGTTTGCCAAATACTCCCTCC 58.197 47.619 0.00 0.00 0.00 4.30
4799 7451 4.864704 TTTGTTTGCCAAATACTCCCTC 57.135 40.909 0.00 0.00 38.12 4.30
4800 7452 5.622346 TTTTTGTTTGCCAAATACTCCCT 57.378 34.783 0.00 0.00 42.45 4.20
4801 7453 5.762711 ACATTTTTGTTTGCCAAATACTCCC 59.237 36.000 0.00 0.00 42.45 4.30
4802 7454 6.481644 TGACATTTTTGTTTGCCAAATACTCC 59.518 34.615 0.00 0.00 42.45 3.85
4803 7455 7.475771 TGACATTTTTGTTTGCCAAATACTC 57.524 32.000 0.00 0.00 42.45 2.59
4825 7477 9.823647 TTTTAATCAAAAGTATTTGGCACTTGA 57.176 25.926 0.00 0.00 44.88 3.02
4923 7575 1.674359 TGGCACTTGACATTTCACGT 58.326 45.000 0.00 0.00 34.63 4.49
4995 7676 4.727507 TGTGCCTCAAAAGTAGCAAAAA 57.272 36.364 0.00 0.00 36.91 1.94
4996 7677 4.727507 TTGTGCCTCAAAAGTAGCAAAA 57.272 36.364 0.00 0.00 36.91 2.44
4997 7678 4.727507 TTTGTGCCTCAAAAGTAGCAAA 57.272 36.364 2.40 0.00 42.18 3.68
5072 7753 6.263168 AGACTACTTCATTTTCAGGGTGTTTG 59.737 38.462 0.00 0.00 0.00 2.93
5167 7848 0.397254 CCCACCGGATGTAGTCTCCT 60.397 60.000 9.46 0.00 0.00 3.69
5184 7865 2.093235 GGAGATGCTATGATGGTAGCCC 60.093 54.545 3.72 0.00 45.07 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.