Multiple sequence alignment - TraesCS7A01G055600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G055600 chr7A 100.000 5779 0 0 1 5779 26785338 26779560 0.000000e+00 10672
1 TraesCS7A01G055600 chr7A 96.120 1959 75 1 787 2744 112939061 112937103 0.000000e+00 3195
2 TraesCS7A01G055600 chr7A 94.986 1775 76 8 3060 4825 112933989 112932219 0.000000e+00 2772
3 TraesCS7A01G055600 chr7A 96.825 252 7 1 2742 2993 112934391 112934141 2.490000e-113 420
4 TraesCS7A01G055600 chr6A 99.392 2137 12 1 608 2744 535151258 535149123 0.000000e+00 3873
5 TraesCS7A01G055600 chr6A 99.085 2077 19 0 2742 4818 535146415 535144339 0.000000e+00 3731
6 TraesCS7A01G055600 chr6A 96.828 725 22 1 4814 5537 535144103 535143379 0.000000e+00 1210
7 TraesCS7A01G055600 chr6A 82.749 684 94 15 4861 5537 74242956 74242290 6.450000e-164 588
8 TraesCS7A01G055600 chr6A 82.749 684 94 15 4861 5537 498538461 498539127 6.450000e-164 588
9 TraesCS7A01G055600 chr6A 98.311 296 3 1 307 602 535152126 535151833 8.580000e-143 518
10 TraesCS7A01G055600 chrUn 96.906 1907 58 1 608 2514 77280404 77278499 0.000000e+00 3193
11 TraesCS7A01G055600 chrUn 94.210 1779 74 13 3061 4818 77277372 77275602 0.000000e+00 2687
12 TraesCS7A01G055600 chrUn 91.282 1950 153 12 787 2731 49645180 49647117 0.000000e+00 2643
13 TraesCS7A01G055600 chrUn 96.959 296 6 2 307 602 77281240 77280948 1.450000e-135 494
14 TraesCS7A01G055600 chrUn 97.590 249 6 0 2742 2990 77277776 77277528 1.490000e-115 427
15 TraesCS7A01G055600 chr4B 96.849 1904 60 0 608 2511 662390093 662391996 0.000000e+00 3184
16 TraesCS7A01G055600 chr4B 94.488 1778 75 12 3061 4818 662393126 662394900 0.000000e+00 2719
17 TraesCS7A01G055600 chr4B 96.690 725 21 2 4814 5537 662395136 662395858 0.000000e+00 1203
18 TraesCS7A01G055600 chr4B 96.246 293 8 2 307 599 662389229 662389518 1.460000e-130 477
19 TraesCS7A01G055600 chr4B 97.992 249 5 0 2742 2990 662392722 662392970 3.200000e-117 433
20 TraesCS7A01G055600 chr3B 94.756 1964 101 2 781 2744 493200031 493201992 0.000000e+00 3055
21 TraesCS7A01G055600 chr3B 94.204 1294 69 5 3060 4351 493204967 493206256 0.000000e+00 1969
22 TraesCS7A01G055600 chr3B 95.096 469 21 2 4350 4818 493271514 493271980 0.000000e+00 737
23 TraesCS7A01G055600 chr3B 93.750 208 13 0 2742 2949 493204722 493204929 4.350000e-81 313
24 TraesCS7A01G055600 chr3B 93.506 77 5 0 4813 4889 493272201 493272277 1.320000e-21 115
25 TraesCS7A01G055600 chr5A 95.174 1844 89 0 779 2622 632599209 632601052 0.000000e+00 2913
26 TraesCS7A01G055600 chr5A 96.063 127 5 0 2618 2744 632601245 632601371 2.110000e-49 207
27 TraesCS7A01G055600 chr4D 95.130 1848 74 11 2984 4818 489788440 489786596 0.000000e+00 2900
28 TraesCS7A01G055600 chr4D 96.483 1251 39 5 608 1858 489875942 489874697 0.000000e+00 2061
29 TraesCS7A01G055600 chr4D 94.766 726 36 2 4814 5537 489786360 489785635 0.000000e+00 1129
30 TraesCS7A01G055600 chr4D 95.968 248 10 0 2742 2989 489788785 489788538 2.510000e-108 403
31 TraesCS7A01G055600 chr7B 95.196 1811 77 6 779 2589 57812957 57814757 0.000000e+00 2854
32 TraesCS7A01G055600 chr7B 93.879 1062 62 2 3060 4120 57839612 57840671 0.000000e+00 1598
33 TraesCS7A01G055600 chr7B 95.462 639 26 2 4180 4818 57840686 57841321 0.000000e+00 1016
34 TraesCS7A01G055600 chr7B 90.909 209 13 2 2741 2949 57839372 57839574 5.700000e-70 276
35 TraesCS7A01G055600 chr7B 94.872 156 8 0 2589 2744 57837086 57837241 1.610000e-60 244
36 TraesCS7A01G055600 chr1B 93.836 1736 85 7 3085 4818 639564697 639566412 0.000000e+00 2593
37 TraesCS7A01G055600 chr1B 93.141 277 19 0 307 583 639560160 639560436 1.940000e-109 407
38 TraesCS7A01G055600 chr1B 96.186 236 9 0 608 843 639561030 639561265 2.530000e-103 387
39 TraesCS7A01G055600 chr1B 96.682 211 7 0 2742 2952 639564393 639564603 9.210000e-93 351
40 TraesCS7A01G055600 chr3D 94.526 1425 62 11 2984 4395 535443712 535445133 0.000000e+00 2185
41 TraesCS7A01G055600 chr3D 94.093 728 38 5 4814 5537 535445727 535446453 0.000000e+00 1101
42 TraesCS7A01G055600 chr3D 95.984 249 10 0 2742 2990 535443367 535443615 6.970000e-109 405
43 TraesCS7A01G055600 chr3A 96.154 1092 41 1 1493 2583 617307517 617306426 0.000000e+00 1783
44 TraesCS7A01G055600 chr3A 86.867 731 86 10 4814 5539 22934504 22933779 0.000000e+00 809
45 TraesCS7A01G055600 chr6B 96.552 725 22 2 4814 5537 91167571 91166849 0.000000e+00 1197
46 TraesCS7A01G055600 chr4A 90.422 877 73 9 3948 4820 661670267 661671136 0.000000e+00 1144
47 TraesCS7A01G055600 chr4A 86.573 715 72 15 4821 5530 661671390 661672085 0.000000e+00 767
48 TraesCS7A01G055600 chr4A 87.500 208 14 5 107 306 710256115 710255912 4.500000e-56 230
49 TraesCS7A01G055600 chr7D 79.032 248 27 10 5539 5766 25851724 25851482 4.670000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G055600 chr7A 26779560 26785338 5778 True 10672.000000 10672 100.000000 1 5779 1 chr7A.!!$R1 5778
1 TraesCS7A01G055600 chr7A 112932219 112939061 6842 True 2129.000000 3195 95.977000 787 4825 3 chr7A.!!$R2 4038
2 TraesCS7A01G055600 chr6A 535143379 535152126 8747 True 2333.000000 3873 98.404000 307 5537 4 chr6A.!!$R2 5230
3 TraesCS7A01G055600 chr6A 74242290 74242956 666 True 588.000000 588 82.749000 4861 5537 1 chr6A.!!$R1 676
4 TraesCS7A01G055600 chr6A 498538461 498539127 666 False 588.000000 588 82.749000 4861 5537 1 chr6A.!!$F1 676
5 TraesCS7A01G055600 chrUn 49645180 49647117 1937 False 2643.000000 2643 91.282000 787 2731 1 chrUn.!!$F1 1944
6 TraesCS7A01G055600 chrUn 77275602 77281240 5638 True 1700.250000 3193 96.416250 307 4818 4 chrUn.!!$R1 4511
7 TraesCS7A01G055600 chr4B 662389229 662395858 6629 False 1603.200000 3184 96.453000 307 5537 5 chr4B.!!$F1 5230
8 TraesCS7A01G055600 chr3B 493200031 493206256 6225 False 1779.000000 3055 94.236667 781 4351 3 chr3B.!!$F1 3570
9 TraesCS7A01G055600 chr3B 493271514 493272277 763 False 426.000000 737 94.301000 4350 4889 2 chr3B.!!$F2 539
10 TraesCS7A01G055600 chr5A 632599209 632601371 2162 False 1560.000000 2913 95.618500 779 2744 2 chr5A.!!$F1 1965
11 TraesCS7A01G055600 chr4D 489874697 489875942 1245 True 2061.000000 2061 96.483000 608 1858 1 chr4D.!!$R1 1250
12 TraesCS7A01G055600 chr4D 489785635 489788785 3150 True 1477.333333 2900 95.288000 2742 5537 3 chr4D.!!$R2 2795
13 TraesCS7A01G055600 chr7B 57812957 57814757 1800 False 2854.000000 2854 95.196000 779 2589 1 chr7B.!!$F1 1810
14 TraesCS7A01G055600 chr7B 57837086 57841321 4235 False 783.500000 1598 93.780500 2589 4818 4 chr7B.!!$F2 2229
15 TraesCS7A01G055600 chr1B 639560160 639566412 6252 False 934.500000 2593 94.961250 307 4818 4 chr1B.!!$F1 4511
16 TraesCS7A01G055600 chr3D 535443367 535446453 3086 False 1230.333333 2185 94.867667 2742 5537 3 chr3D.!!$F1 2795
17 TraesCS7A01G055600 chr3A 617306426 617307517 1091 True 1783.000000 1783 96.154000 1493 2583 1 chr3A.!!$R2 1090
18 TraesCS7A01G055600 chr3A 22933779 22934504 725 True 809.000000 809 86.867000 4814 5539 1 chr3A.!!$R1 725
19 TraesCS7A01G055600 chr6B 91166849 91167571 722 True 1197.000000 1197 96.552000 4814 5537 1 chr6B.!!$R1 723
20 TraesCS7A01G055600 chr4A 661670267 661672085 1818 False 955.500000 1144 88.497500 3948 5530 2 chr4A.!!$F1 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.036765 AAACAAGCATAGGCCGTCGA 60.037 50.000 0.00 0.0 42.56 4.20 F
58 59 0.039617 TTTGCCTGGCGTCGAAAATG 60.040 50.000 14.98 0.0 0.00 2.32 F
143 144 0.104855 ATCTCCATGCATGCGTACGT 59.895 50.000 21.69 0.0 0.00 3.57 F
245 246 0.108424 AGCTGCTCCGATCAGTTGTC 60.108 55.000 0.00 0.0 34.21 3.18 F
246 247 0.390340 GCTGCTCCGATCAGTTGTCA 60.390 55.000 1.41 0.0 34.21 3.58 F
251 252 0.530288 TCCGATCAGTTGTCATCGCA 59.470 50.000 0.00 0.0 40.51 5.10 F
252 253 0.647410 CCGATCAGTTGTCATCGCAC 59.353 55.000 0.00 0.0 40.51 5.34 F
305 306 1.078709 CGATCACTCACGCCACATTT 58.921 50.000 0.00 0.0 0.00 2.32 F
3368 7999 1.704628 TCTTTGATTGGTGAGGAGGCA 59.295 47.619 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 2364 4.706476 CAGCTCCCAATCCAAATCTAACAA 59.294 41.667 0.00 0.0 0.00 2.83 R
2156 2754 5.240183 CCCATATAGCATTTCTTGTGTCCAG 59.760 44.000 0.00 0.0 0.00 3.86 R
2447 4002 4.002906 TGACGCAATAGAAGTGTTTCCT 57.997 40.909 0.00 0.0 33.64 3.36 R
2644 4396 8.494433 ACCATGTGAATCCAAGTAGTATAATGT 58.506 33.333 0.00 0.0 0.00 2.71 R
3368 7999 6.348498 TGATGAATAAAGATCACCATCACGT 58.652 36.000 0.00 0.0 36.48 4.49 R
3400 8031 5.276461 TGGCCTTCCTTTCTTTTCTTTTC 57.724 39.130 3.32 0.0 0.00 2.29 R
3504 8135 0.036732 TGCCGAAGCTCCATGTTCTT 59.963 50.000 0.00 0.0 40.80 2.52 R
4446 9103 8.195165 AGCTATGATAGTACCTTAGAATGCAA 57.805 34.615 0.92 0.0 0.00 4.08 R
5727 10699 0.035317 TCGCATGCAGAGAGTTGGTT 59.965 50.000 19.57 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.865745 CGGTCAGTAGAAACAAGCATAGG 59.134 47.826 0.00 0.00 0.00 2.57
23 24 3.623510 GGTCAGTAGAAACAAGCATAGGC 59.376 47.826 0.00 0.00 41.61 3.93
24 25 3.623510 GTCAGTAGAAACAAGCATAGGCC 59.376 47.826 0.00 0.00 42.56 5.19
25 26 2.609459 CAGTAGAAACAAGCATAGGCCG 59.391 50.000 0.00 0.00 42.56 6.13
26 27 2.236395 AGTAGAAACAAGCATAGGCCGT 59.764 45.455 0.00 0.00 42.56 5.68
27 28 1.739067 AGAAACAAGCATAGGCCGTC 58.261 50.000 0.00 0.00 42.56 4.79
28 29 0.373716 GAAACAAGCATAGGCCGTCG 59.626 55.000 0.00 0.00 42.56 5.12
29 30 0.036765 AAACAAGCATAGGCCGTCGA 60.037 50.000 0.00 0.00 42.56 4.20
30 31 0.460284 AACAAGCATAGGCCGTCGAG 60.460 55.000 0.00 0.00 42.56 4.04
31 32 2.107141 AAGCATAGGCCGTCGAGC 59.893 61.111 0.00 0.00 42.56 5.03
32 33 2.427245 AAGCATAGGCCGTCGAGCT 61.427 57.895 0.00 0.65 42.56 4.09
33 34 2.355244 GCATAGGCCGTCGAGCTC 60.355 66.667 2.73 2.73 0.00 4.09
34 35 2.336809 CATAGGCCGTCGAGCTCC 59.663 66.667 8.47 0.00 0.00 4.70
35 36 2.196229 ATAGGCCGTCGAGCTCCT 59.804 61.111 8.47 0.81 0.00 3.69
36 37 1.455959 ATAGGCCGTCGAGCTCCTT 60.456 57.895 8.47 0.00 0.00 3.36
37 38 1.739338 ATAGGCCGTCGAGCTCCTTG 61.739 60.000 8.47 0.00 0.00 3.61
38 39 4.070552 GGCCGTCGAGCTCCTTGT 62.071 66.667 8.47 0.00 0.00 3.16
39 40 2.048127 GCCGTCGAGCTCCTTGTT 60.048 61.111 8.47 0.00 0.00 2.83
40 41 1.668151 GCCGTCGAGCTCCTTGTTT 60.668 57.895 8.47 0.00 0.00 2.83
41 42 1.228657 GCCGTCGAGCTCCTTGTTTT 61.229 55.000 8.47 0.00 0.00 2.43
42 43 0.512952 CCGTCGAGCTCCTTGTTTTG 59.487 55.000 8.47 0.00 0.00 2.44
43 44 0.110644 CGTCGAGCTCCTTGTTTTGC 60.111 55.000 8.47 0.00 0.00 3.68
44 45 0.238553 GTCGAGCTCCTTGTTTTGCC 59.761 55.000 8.47 0.00 0.00 4.52
45 46 0.108585 TCGAGCTCCTTGTTTTGCCT 59.891 50.000 8.47 0.00 0.00 4.75
46 47 0.239347 CGAGCTCCTTGTTTTGCCTG 59.761 55.000 8.47 0.00 0.00 4.85
47 48 0.600057 GAGCTCCTTGTTTTGCCTGG 59.400 55.000 0.87 0.00 0.00 4.45
48 49 1.005748 GCTCCTTGTTTTGCCTGGC 60.006 57.895 12.87 12.87 0.00 4.85
49 50 1.286880 CTCCTTGTTTTGCCTGGCG 59.713 57.895 14.98 0.00 0.00 5.69
50 51 1.454847 TCCTTGTTTTGCCTGGCGT 60.455 52.632 14.98 0.00 0.00 5.68
51 52 1.007387 CCTTGTTTTGCCTGGCGTC 60.007 57.895 14.98 4.84 0.00 5.19
52 53 1.370414 CTTGTTTTGCCTGGCGTCG 60.370 57.895 14.98 0.00 0.00 5.12
53 54 1.781025 CTTGTTTTGCCTGGCGTCGA 61.781 55.000 14.98 3.42 0.00 4.20
54 55 1.377366 TTGTTTTGCCTGGCGTCGAA 61.377 50.000 14.98 0.00 0.00 3.71
55 56 1.357334 GTTTTGCCTGGCGTCGAAA 59.643 52.632 14.98 5.99 0.00 3.46
56 57 0.248702 GTTTTGCCTGGCGTCGAAAA 60.249 50.000 14.98 11.93 0.00 2.29
57 58 0.671251 TTTTGCCTGGCGTCGAAAAT 59.329 45.000 14.98 0.00 0.00 1.82
58 59 0.039617 TTTGCCTGGCGTCGAAAATG 60.040 50.000 14.98 0.00 0.00 2.32
59 60 1.861542 TTGCCTGGCGTCGAAAATGG 61.862 55.000 14.98 0.00 0.00 3.16
60 61 2.038269 GCCTGGCGTCGAAAATGGA 61.038 57.895 1.35 0.00 0.00 3.41
61 62 1.376609 GCCTGGCGTCGAAAATGGAT 61.377 55.000 1.35 0.00 0.00 3.41
62 63 1.094785 CCTGGCGTCGAAAATGGATT 58.905 50.000 0.00 0.00 0.00 3.01
63 64 1.202177 CCTGGCGTCGAAAATGGATTG 60.202 52.381 0.00 0.00 0.00 2.67
64 65 0.808125 TGGCGTCGAAAATGGATTGG 59.192 50.000 0.00 0.00 0.00 3.16
65 66 0.525455 GGCGTCGAAAATGGATTGGC 60.525 55.000 0.00 0.00 0.00 4.52
66 67 0.451783 GCGTCGAAAATGGATTGGCT 59.548 50.000 0.00 0.00 0.00 4.75
67 68 1.795162 GCGTCGAAAATGGATTGGCTG 60.795 52.381 0.00 0.00 0.00 4.85
68 69 1.468520 CGTCGAAAATGGATTGGCTGT 59.531 47.619 0.00 0.00 0.00 4.40
69 70 2.476185 CGTCGAAAATGGATTGGCTGTC 60.476 50.000 0.00 0.00 0.00 3.51
70 71 2.091541 TCGAAAATGGATTGGCTGTCC 58.908 47.619 2.33 2.33 36.26 4.02
71 72 1.134946 CGAAAATGGATTGGCTGTCCC 59.865 52.381 6.33 0.00 34.76 4.46
72 73 1.482182 GAAAATGGATTGGCTGTCCCC 59.518 52.381 6.33 0.00 34.76 4.81
73 74 0.325577 AAATGGATTGGCTGTCCCCC 60.326 55.000 6.33 0.00 34.76 5.40
74 75 2.572333 AATGGATTGGCTGTCCCCCG 62.572 60.000 6.33 0.00 34.76 5.73
76 77 4.424711 GATTGGCTGTCCCCCGCA 62.425 66.667 0.00 0.00 0.00 5.69
77 78 4.740822 ATTGGCTGTCCCCCGCAC 62.741 66.667 0.00 0.00 0.00 5.34
107 108 2.746277 GGTGCATCGCCGTTTCCT 60.746 61.111 0.00 0.00 0.00 3.36
108 109 2.750888 GGTGCATCGCCGTTTCCTC 61.751 63.158 0.00 0.00 0.00 3.71
109 110 2.435938 TGCATCGCCGTTTCCTCC 60.436 61.111 0.00 0.00 0.00 4.30
110 111 3.202706 GCATCGCCGTTTCCTCCC 61.203 66.667 0.00 0.00 0.00 4.30
111 112 2.890474 CATCGCCGTTTCCTCCCG 60.890 66.667 0.00 0.00 0.00 5.14
112 113 4.157120 ATCGCCGTTTCCTCCCGG 62.157 66.667 0.00 0.00 46.90 5.73
131 132 3.564218 GGCGGGCTCCATCTCCAT 61.564 66.667 0.00 0.00 0.00 3.41
132 133 2.281345 GCGGGCTCCATCTCCATG 60.281 66.667 0.00 0.00 0.00 3.66
133 134 2.281345 CGGGCTCCATCTCCATGC 60.281 66.667 0.00 0.00 0.00 4.06
134 135 2.921435 GGGCTCCATCTCCATGCA 59.079 61.111 0.00 0.00 0.00 3.96
135 136 1.459369 GGGCTCCATCTCCATGCAT 59.541 57.895 0.00 0.00 0.00 3.96
136 137 0.894184 GGGCTCCATCTCCATGCATG 60.894 60.000 20.19 20.19 0.00 4.06
137 138 1.524863 GGCTCCATCTCCATGCATGC 61.525 60.000 21.69 11.82 0.00 4.06
138 139 1.853114 GCTCCATCTCCATGCATGCG 61.853 60.000 21.69 14.24 0.00 4.73
139 140 0.534427 CTCCATCTCCATGCATGCGT 60.534 55.000 21.69 10.53 0.00 5.24
140 141 0.758123 TCCATCTCCATGCATGCGTA 59.242 50.000 21.69 8.28 0.00 4.42
141 142 0.870393 CCATCTCCATGCATGCGTAC 59.130 55.000 21.69 0.00 0.00 3.67
142 143 0.509929 CATCTCCATGCATGCGTACG 59.490 55.000 21.69 11.84 0.00 3.67
143 144 0.104855 ATCTCCATGCATGCGTACGT 59.895 50.000 21.69 0.00 0.00 3.57
144 145 0.805711 TCTCCATGCATGCGTACGTG 60.806 55.000 21.69 9.35 35.78 4.49
168 169 3.710722 CGGCTGGAGCTGGAGGTT 61.711 66.667 0.00 0.00 43.47 3.50
169 170 2.759795 GGCTGGAGCTGGAGGTTT 59.240 61.111 0.00 0.00 41.70 3.27
170 171 1.377856 GGCTGGAGCTGGAGGTTTC 60.378 63.158 0.00 0.00 41.70 2.78
171 172 1.376466 GCTGGAGCTGGAGGTTTCA 59.624 57.895 0.00 0.00 38.21 2.69
172 173 0.676151 GCTGGAGCTGGAGGTTTCAG 60.676 60.000 0.00 0.00 38.21 3.02
178 179 3.305709 CTGGAGGTTTCAGCAACGA 57.694 52.632 0.00 0.00 36.05 3.85
179 180 1.813513 CTGGAGGTTTCAGCAACGAT 58.186 50.000 0.00 0.00 36.05 3.73
180 181 1.466167 CTGGAGGTTTCAGCAACGATG 59.534 52.381 0.00 0.00 36.05 3.84
181 182 1.071542 TGGAGGTTTCAGCAACGATGA 59.928 47.619 0.00 0.00 36.05 2.92
182 183 1.464997 GGAGGTTTCAGCAACGATGAC 59.535 52.381 0.00 0.00 36.05 3.06
183 184 1.464997 GAGGTTTCAGCAACGATGACC 59.535 52.381 0.00 0.00 36.05 4.02
184 185 1.072331 AGGTTTCAGCAACGATGACCT 59.928 47.619 0.00 0.00 36.05 3.85
185 186 1.880027 GGTTTCAGCAACGATGACCTT 59.120 47.619 0.00 0.00 36.05 3.50
186 187 2.095718 GGTTTCAGCAACGATGACCTTC 60.096 50.000 0.00 0.00 36.05 3.46
187 188 2.542020 TTCAGCAACGATGACCTTCA 57.458 45.000 0.00 0.00 0.00 3.02
188 189 2.084610 TCAGCAACGATGACCTTCAG 57.915 50.000 0.00 0.00 0.00 3.02
189 190 0.445436 CAGCAACGATGACCTTCAGC 59.555 55.000 0.00 0.00 0.00 4.26
190 191 0.674895 AGCAACGATGACCTTCAGCC 60.675 55.000 0.00 0.00 26.80 4.85
191 192 0.955428 GCAACGATGACCTTCAGCCA 60.955 55.000 0.00 0.00 26.80 4.75
192 193 0.798776 CAACGATGACCTTCAGCCAC 59.201 55.000 0.00 0.00 26.80 5.01
193 194 0.670546 AACGATGACCTTCAGCCACG 60.671 55.000 0.00 0.00 26.80 4.94
194 195 2.456119 CGATGACCTTCAGCCACGC 61.456 63.158 0.00 0.00 26.80 5.34
195 196 1.375908 GATGACCTTCAGCCACGCA 60.376 57.895 0.00 0.00 0.00 5.24
196 197 0.745845 GATGACCTTCAGCCACGCAT 60.746 55.000 0.00 0.00 0.00 4.73
197 198 0.322816 ATGACCTTCAGCCACGCATT 60.323 50.000 0.00 0.00 0.00 3.56
198 199 1.236616 TGACCTTCAGCCACGCATTG 61.237 55.000 0.00 0.00 0.00 2.82
199 200 2.180017 CCTTCAGCCACGCATTGC 59.820 61.111 0.00 0.00 0.00 3.56
200 201 2.180017 CTTCAGCCACGCATTGCC 59.820 61.111 2.41 0.00 0.00 4.52
201 202 2.596923 TTCAGCCACGCATTGCCA 60.597 55.556 2.41 0.00 0.00 4.92
202 203 2.807631 CTTCAGCCACGCATTGCCAC 62.808 60.000 2.41 0.00 0.00 5.01
203 204 4.764336 CAGCCACGCATTGCCACG 62.764 66.667 2.41 0.00 0.00 4.94
206 207 4.403137 CCACGCATTGCCACGGTG 62.403 66.667 2.41 0.00 0.00 4.94
227 228 3.384532 GGTTGGGTGCCATGCCAG 61.385 66.667 0.00 0.00 31.53 4.85
228 229 4.073200 GTTGGGTGCCATGCCAGC 62.073 66.667 0.00 0.00 31.53 4.85
229 230 4.304413 TTGGGTGCCATGCCAGCT 62.304 61.111 5.79 0.00 31.53 4.24
233 234 3.823330 GTGCCATGCCAGCTGCTC 61.823 66.667 8.66 2.43 42.00 4.26
236 237 4.478371 CCATGCCAGCTGCTCCGA 62.478 66.667 8.66 0.00 42.00 4.55
237 238 2.203167 CATGCCAGCTGCTCCGAT 60.203 61.111 8.66 0.00 42.00 4.18
238 239 2.110627 ATGCCAGCTGCTCCGATC 59.889 61.111 8.66 0.00 42.00 3.69
239 240 2.738938 ATGCCAGCTGCTCCGATCA 61.739 57.895 8.66 0.00 42.00 2.92
240 241 2.588314 GCCAGCTGCTCCGATCAG 60.588 66.667 8.66 0.00 36.87 2.90
241 242 2.898738 CCAGCTGCTCCGATCAGT 59.101 61.111 8.66 0.00 34.21 3.41
242 243 1.220206 CCAGCTGCTCCGATCAGTT 59.780 57.895 8.66 0.00 34.21 3.16
243 244 1.088340 CCAGCTGCTCCGATCAGTTG 61.088 60.000 8.66 8.63 40.82 3.16
244 245 0.390866 CAGCTGCTCCGATCAGTTGT 60.391 55.000 0.00 0.00 37.79 3.32
245 246 0.108424 AGCTGCTCCGATCAGTTGTC 60.108 55.000 0.00 0.00 34.21 3.18
246 247 0.390340 GCTGCTCCGATCAGTTGTCA 60.390 55.000 1.41 0.00 34.21 3.58
247 248 1.741732 GCTGCTCCGATCAGTTGTCAT 60.742 52.381 1.41 0.00 34.21 3.06
248 249 2.200067 CTGCTCCGATCAGTTGTCATC 58.800 52.381 0.00 0.00 0.00 2.92
249 250 1.203928 GCTCCGATCAGTTGTCATCG 58.796 55.000 0.00 0.00 41.34 3.84
250 251 1.203928 CTCCGATCAGTTGTCATCGC 58.796 55.000 0.00 0.00 40.51 4.58
251 252 0.530288 TCCGATCAGTTGTCATCGCA 59.470 50.000 0.00 0.00 40.51 5.10
252 253 0.647410 CCGATCAGTTGTCATCGCAC 59.353 55.000 0.00 0.00 40.51 5.34
253 254 1.633561 CGATCAGTTGTCATCGCACT 58.366 50.000 0.00 0.00 35.84 4.40
254 255 1.585668 CGATCAGTTGTCATCGCACTC 59.414 52.381 0.00 0.00 35.84 3.51
255 256 1.585668 GATCAGTTGTCATCGCACTCG 59.414 52.381 0.00 0.00 0.00 4.18
264 265 4.193334 TCGCACTCGATCGGGCAG 62.193 66.667 16.63 9.45 40.21 4.85
265 266 4.498520 CGCACTCGATCGGGCAGT 62.499 66.667 16.63 8.64 38.10 4.40
266 267 2.887568 GCACTCGATCGGGCAGTG 60.888 66.667 23.79 23.79 40.53 3.66
267 268 2.573869 CACTCGATCGGGCAGTGT 59.426 61.111 16.63 2.18 34.08 3.55
268 269 1.517257 CACTCGATCGGGCAGTGTC 60.517 63.158 16.63 0.00 34.08 3.67
269 270 2.278206 CTCGATCGGGCAGTGTCG 60.278 66.667 16.41 8.29 35.55 4.35
270 271 3.758088 CTCGATCGGGCAGTGTCGG 62.758 68.421 16.41 0.00 35.01 4.79
272 273 4.148825 GATCGGGCAGTGTCGGCT 62.149 66.667 0.00 0.00 0.00 5.52
273 274 4.457496 ATCGGGCAGTGTCGGCTG 62.457 66.667 0.00 0.00 39.37 4.85
289 290 4.408821 TGCTTGCCCTTCCGCGAT 62.409 61.111 8.23 0.00 0.00 4.58
290 291 3.577313 GCTTGCCCTTCCGCGATC 61.577 66.667 8.23 0.00 0.00 3.69
291 292 2.125147 CTTGCCCTTCCGCGATCA 60.125 61.111 8.23 0.00 0.00 2.92
292 293 2.435938 TTGCCCTTCCGCGATCAC 60.436 61.111 8.23 0.00 0.00 3.06
293 294 2.859273 CTTGCCCTTCCGCGATCACT 62.859 60.000 8.23 0.00 0.00 3.41
294 295 2.586357 GCCCTTCCGCGATCACTC 60.586 66.667 8.23 0.00 0.00 3.51
295 296 2.892640 CCCTTCCGCGATCACTCA 59.107 61.111 8.23 0.00 0.00 3.41
296 297 1.519455 CCCTTCCGCGATCACTCAC 60.519 63.158 8.23 0.00 0.00 3.51
297 298 1.874019 CCTTCCGCGATCACTCACG 60.874 63.158 8.23 0.00 0.00 4.35
303 304 4.502263 CGATCACTCACGCCACAT 57.498 55.556 0.00 0.00 0.00 3.21
304 305 2.754648 CGATCACTCACGCCACATT 58.245 52.632 0.00 0.00 0.00 2.71
305 306 1.078709 CGATCACTCACGCCACATTT 58.921 50.000 0.00 0.00 0.00 2.32
434 435 3.509575 ACATGCTTTGAAGGCGGATTTAA 59.490 39.130 0.00 0.00 0.00 1.52
850 1442 2.032528 CAGCAAGGTCTTCCGCCA 59.967 61.111 0.00 0.00 39.05 5.69
1272 1867 3.427233 GCAAAAGATTCTCGAAGCTGCAT 60.427 43.478 1.02 0.00 37.11 3.96
2156 2754 5.703130 AGACATGCTCTCTTTGGTTAAAGAC 59.297 40.000 0.00 0.00 45.46 3.01
2447 4002 3.055167 TGCTTCTTTCAGCTGCCATACTA 60.055 43.478 9.47 0.00 40.79 1.82
2644 4396 4.255510 AGTAAACCATACCTACCTCCGA 57.744 45.455 0.00 0.00 0.00 4.55
3368 7999 1.704628 TCTTTGATTGGTGAGGAGGCA 59.295 47.619 0.00 0.00 0.00 4.75
3400 8031 8.190122 TGGTGATCTTTATTCATCAATTTTCCG 58.810 33.333 0.00 0.00 31.45 4.30
3504 8135 5.562696 GCTGAACTACATGCTGCTAAACAAA 60.563 40.000 0.00 0.00 0.00 2.83
4446 9103 1.609208 AACAGACCGTACTACCGTGT 58.391 50.000 0.00 0.00 0.00 4.49
4577 9234 8.367911 TGTAGTCAGATGTCTTTCAACAATAGT 58.632 33.333 0.00 0.00 31.81 2.12
4791 9448 6.493166 AGGGAAACATGAAAGATGGTCATAA 58.507 36.000 0.00 0.00 33.91 1.90
5040 10004 6.365789 GCAAATTATTGAGCTTGCTGTAACAA 59.634 34.615 0.00 0.00 40.76 2.83
5254 10222 6.127619 GCTACAAATAGTCTTTGGAGGCATTT 60.128 38.462 13.50 0.00 39.99 2.32
5285 10255 2.036346 GCCTTCAATTGAGCTTGTTGGT 59.964 45.455 8.41 0.00 0.00 3.67
5312 10282 4.904241 TGGAAAAATGCCTGGGTTTAATG 58.096 39.130 0.00 0.00 0.00 1.90
5417 10388 7.308435 CGTTCTAGAAAAATGCCTCAAAAGAT 58.692 34.615 6.78 0.00 0.00 2.40
5496 10468 4.555689 TGGCATTATAGGGGCTTTTTGAT 58.444 39.130 0.00 0.00 0.00 2.57
5539 10511 3.768406 TGACGTACGTGTTGTAGTGTTT 58.232 40.909 28.16 0.00 32.51 2.83
5540 10512 3.547068 TGACGTACGTGTTGTAGTGTTTG 59.453 43.478 28.16 0.00 32.51 2.93
5541 10513 2.859538 ACGTACGTGTTGTAGTGTTTGG 59.140 45.455 22.14 0.00 32.51 3.28
5542 10514 2.859538 CGTACGTGTTGTAGTGTTTGGT 59.140 45.455 7.22 0.00 32.51 3.67
5543 10515 3.061006 CGTACGTGTTGTAGTGTTTGGTC 60.061 47.826 7.22 0.00 32.51 4.02
5544 10516 1.928503 ACGTGTTGTAGTGTTTGGTCG 59.071 47.619 0.00 0.00 0.00 4.79
5545 10517 1.332552 CGTGTTGTAGTGTTTGGTCGC 60.333 52.381 0.00 0.00 0.00 5.19
5546 10518 1.003223 GTGTTGTAGTGTTTGGTCGCC 60.003 52.381 0.00 0.00 0.00 5.54
5547 10519 1.301423 GTTGTAGTGTTTGGTCGCCA 58.699 50.000 0.00 0.00 0.00 5.69
5548 10520 1.003223 GTTGTAGTGTTTGGTCGCCAC 60.003 52.381 0.00 0.00 30.78 5.01
5549 10521 0.466543 TGTAGTGTTTGGTCGCCACT 59.533 50.000 0.00 0.00 41.93 4.00
5550 10522 1.687660 TGTAGTGTTTGGTCGCCACTA 59.312 47.619 0.00 0.00 39.90 2.74
5551 10523 2.102757 TGTAGTGTTTGGTCGCCACTAA 59.897 45.455 0.00 0.00 41.79 2.24
5552 10524 1.878953 AGTGTTTGGTCGCCACTAAG 58.121 50.000 0.00 0.00 37.66 2.18
5553 10525 0.237498 GTGTTTGGTCGCCACTAAGC 59.763 55.000 0.00 0.00 30.78 3.09
5554 10526 0.107831 TGTTTGGTCGCCACTAAGCT 59.892 50.000 0.00 0.00 30.78 3.74
5555 10527 0.517316 GTTTGGTCGCCACTAAGCTG 59.483 55.000 0.00 0.00 30.78 4.24
5556 10528 1.234615 TTTGGTCGCCACTAAGCTGC 61.235 55.000 0.00 0.00 30.78 5.25
5557 10529 2.111999 TTGGTCGCCACTAAGCTGCT 62.112 55.000 0.00 0.00 30.78 4.24
5558 10530 2.103042 GGTCGCCACTAAGCTGCTG 61.103 63.158 1.35 0.00 0.00 4.41
5559 10531 2.103042 GTCGCCACTAAGCTGCTGG 61.103 63.158 1.35 1.47 0.00 4.85
5560 10532 2.046892 CGCCACTAAGCTGCTGGT 60.047 61.111 1.35 2.52 0.00 4.00
5561 10533 1.218047 CGCCACTAAGCTGCTGGTA 59.782 57.895 1.35 0.00 0.00 3.25
5562 10534 1.084370 CGCCACTAAGCTGCTGGTAC 61.084 60.000 1.35 1.16 0.00 3.34
5563 10535 1.084370 GCCACTAAGCTGCTGGTACG 61.084 60.000 1.35 1.06 0.00 3.67
5564 10536 0.246635 CCACTAAGCTGCTGGTACGT 59.753 55.000 1.35 0.00 0.00 3.57
5565 10537 1.475280 CCACTAAGCTGCTGGTACGTA 59.525 52.381 1.35 0.00 0.00 3.57
5566 10538 2.527100 CACTAAGCTGCTGGTACGTAC 58.473 52.381 17.56 17.56 0.00 3.67
5567 10539 2.163815 CACTAAGCTGCTGGTACGTACT 59.836 50.000 24.07 5.45 0.00 2.73
5568 10540 3.376234 CACTAAGCTGCTGGTACGTACTA 59.624 47.826 24.07 18.04 0.00 1.82
5569 10541 2.935481 AAGCTGCTGGTACGTACTAC 57.065 50.000 24.07 14.32 0.00 2.73
5570 10542 2.125773 AGCTGCTGGTACGTACTACT 57.874 50.000 24.07 9.58 0.00 2.57
5571 10543 3.272574 AGCTGCTGGTACGTACTACTA 57.727 47.619 24.07 7.83 0.00 1.82
5572 10544 3.204526 AGCTGCTGGTACGTACTACTAG 58.795 50.000 24.07 16.77 37.08 2.57
5577 10549 2.799412 CTGGTACGTACTACTAGCCTCG 59.201 54.545 24.07 1.27 28.09 4.63
5578 10550 2.168521 TGGTACGTACTACTAGCCTCGT 59.831 50.000 24.07 0.00 35.73 4.18
5579 10551 3.198872 GGTACGTACTACTAGCCTCGTT 58.801 50.000 24.07 0.00 33.70 3.85
5580 10552 3.246463 GGTACGTACTACTAGCCTCGTTC 59.754 52.174 24.07 0.00 33.70 3.95
5581 10553 3.258971 ACGTACTACTAGCCTCGTTCT 57.741 47.619 0.00 0.00 0.00 3.01
5582 10554 2.935201 ACGTACTACTAGCCTCGTTCTG 59.065 50.000 0.00 0.00 0.00 3.02
5583 10555 2.286301 CGTACTACTAGCCTCGTTCTGC 60.286 54.545 0.00 0.00 0.00 4.26
5584 10556 1.835494 ACTACTAGCCTCGTTCTGCA 58.165 50.000 0.00 0.00 0.00 4.41
5585 10557 2.168496 ACTACTAGCCTCGTTCTGCAA 58.832 47.619 0.00 0.00 0.00 4.08
5586 10558 2.164624 ACTACTAGCCTCGTTCTGCAAG 59.835 50.000 0.00 0.00 0.00 4.01
5587 10559 0.969894 ACTAGCCTCGTTCTGCAAGT 59.030 50.000 0.00 0.00 33.76 3.16
5588 10560 2.168496 ACTAGCCTCGTTCTGCAAGTA 58.832 47.619 0.00 0.00 33.76 2.24
5589 10561 2.761208 ACTAGCCTCGTTCTGCAAGTAT 59.239 45.455 0.00 0.00 33.76 2.12
5590 10562 2.770164 AGCCTCGTTCTGCAAGTATT 57.230 45.000 0.00 0.00 33.76 1.89
5591 10563 3.059352 AGCCTCGTTCTGCAAGTATTT 57.941 42.857 0.00 0.00 33.76 1.40
5592 10564 2.744202 AGCCTCGTTCTGCAAGTATTTG 59.256 45.455 0.00 0.00 37.36 2.32
5600 10572 3.187058 CAAGTATTTGCGCCGGCT 58.813 55.556 26.68 7.77 40.82 5.52
5601 10573 1.062525 CAAGTATTTGCGCCGGCTC 59.937 57.895 26.68 18.89 40.82 4.70
5602 10574 2.461110 AAGTATTTGCGCCGGCTCG 61.461 57.895 26.68 11.41 40.82 5.03
5620 10592 4.803426 GTCCAGCCGAGACCTGCG 62.803 72.222 0.00 0.00 0.00 5.18
5623 10595 4.363990 CAGCCGAGACCTGCGTGT 62.364 66.667 0.00 0.00 0.00 4.49
5624 10596 4.057428 AGCCGAGACCTGCGTGTC 62.057 66.667 0.00 0.00 35.43 3.67
5633 10605 4.129737 CTGCGTGTCGGTCCGGAT 62.130 66.667 7.81 0.00 0.00 4.18
5634 10606 4.429212 TGCGTGTCGGTCCGGATG 62.429 66.667 7.81 3.39 0.00 3.51
5636 10608 4.429212 CGTGTCGGTCCGGATGCA 62.429 66.667 7.81 1.37 0.00 3.96
5637 10609 2.509336 GTGTCGGTCCGGATGCAG 60.509 66.667 7.81 0.00 0.00 4.41
5638 10610 4.451150 TGTCGGTCCGGATGCAGC 62.451 66.667 7.81 0.00 0.00 5.25
5647 10619 2.672996 GGATGCAGCCACGGTGTT 60.673 61.111 18.08 0.00 33.19 3.32
5648 10620 2.562912 GATGCAGCCACGGTGTTG 59.437 61.111 7.45 6.46 33.19 3.33
5649 10621 3.615536 GATGCAGCCACGGTGTTGC 62.616 63.158 21.09 21.09 37.09 4.17
5650 10622 4.873810 TGCAGCCACGGTGTTGCT 62.874 61.111 25.26 17.35 34.84 3.91
5651 10623 3.595758 GCAGCCACGGTGTTGCTT 61.596 61.111 20.78 2.89 32.12 3.91
5652 10624 3.119193 CAGCCACGGTGTTGCTTT 58.881 55.556 8.85 0.00 32.12 3.51
5653 10625 1.008538 CAGCCACGGTGTTGCTTTC 60.009 57.895 8.85 0.00 32.12 2.62
5654 10626 2.051345 GCCACGGTGTTGCTTTCG 60.051 61.111 7.45 0.00 0.00 3.46
5655 10627 2.051345 CCACGGTGTTGCTTTCGC 60.051 61.111 7.45 0.00 0.00 4.70
5656 10628 2.051345 CACGGTGTTGCTTTCGCC 60.051 61.111 0.00 0.00 34.43 5.54
5659 10631 4.700365 GGTGTTGCTTTCGCCGGC 62.700 66.667 19.07 19.07 34.43 6.13
5692 10664 3.114616 GGGACGACGACGACGAGA 61.115 66.667 25.15 0.00 42.66 4.04
5693 10665 2.095469 GGACGACGACGACGAGAC 59.905 66.667 25.15 14.84 42.66 3.36
5694 10666 2.275081 GACGACGACGACGAGACG 60.275 66.667 25.15 17.07 42.66 4.18
5695 10667 2.710971 GACGACGACGACGAGACGA 61.711 63.158 25.15 0.00 42.66 4.20
5696 10668 2.203140 GACGACGACGACGAGACGAA 62.203 60.000 25.15 0.00 42.66 3.85
5697 10669 1.154782 CGACGACGACGAGACGAAA 60.155 57.895 15.32 0.00 42.66 3.46
5698 10670 0.517946 CGACGACGACGAGACGAAAT 60.518 55.000 15.32 0.00 42.66 2.17
5699 10671 1.599992 GACGACGACGAGACGAAATT 58.400 50.000 15.32 0.00 42.66 1.82
5700 10672 1.572278 GACGACGACGAGACGAAATTC 59.428 52.381 15.32 0.00 42.66 2.17
5701 10673 1.196354 ACGACGACGAGACGAAATTCT 59.804 47.619 15.32 0.00 42.66 2.40
5702 10674 1.832993 CGACGACGAGACGAAATTCTC 59.167 52.381 0.00 0.00 42.66 2.87
5703 10675 2.723923 CGACGACGAGACGAAATTCTCA 60.724 50.000 0.00 0.00 42.03 3.27
5704 10676 3.231965 GACGACGAGACGAAATTCTCAA 58.768 45.455 0.00 0.00 42.03 3.02
5705 10677 2.978489 ACGACGAGACGAAATTCTCAAC 59.022 45.455 0.00 0.00 42.03 3.18
5706 10678 2.341760 CGACGAGACGAAATTCTCAACC 59.658 50.000 0.00 0.00 42.03 3.77
5707 10679 2.325761 ACGAGACGAAATTCTCAACCG 58.674 47.619 0.00 0.00 42.03 4.44
5708 10680 2.030540 ACGAGACGAAATTCTCAACCGA 60.031 45.455 0.00 0.00 42.03 4.69
5709 10681 3.179830 CGAGACGAAATTCTCAACCGAT 58.820 45.455 0.00 0.00 42.03 4.18
5710 10682 3.240861 CGAGACGAAATTCTCAACCGATC 59.759 47.826 0.00 0.00 42.03 3.69
5711 10683 3.522553 AGACGAAATTCTCAACCGATCC 58.477 45.455 0.00 0.00 0.00 3.36
5712 10684 3.056107 AGACGAAATTCTCAACCGATCCA 60.056 43.478 0.00 0.00 0.00 3.41
5713 10685 3.262420 ACGAAATTCTCAACCGATCCAG 58.738 45.455 0.00 0.00 0.00 3.86
5714 10686 3.056107 ACGAAATTCTCAACCGATCCAGA 60.056 43.478 0.00 0.00 0.00 3.86
5715 10687 3.307242 CGAAATTCTCAACCGATCCAGAC 59.693 47.826 0.00 0.00 0.00 3.51
5716 10688 2.586258 ATTCTCAACCGATCCAGACG 57.414 50.000 0.00 0.00 0.00 4.18
5722 10694 4.933064 CCGATCCAGACGGCGAGC 62.933 72.222 16.62 4.95 43.74 5.03
5723 10695 4.193334 CGATCCAGACGGCGAGCA 62.193 66.667 16.62 0.00 0.00 4.26
5724 10696 2.583593 GATCCAGACGGCGAGCAC 60.584 66.667 16.62 1.68 0.00 4.40
5725 10697 4.498520 ATCCAGACGGCGAGCACG 62.499 66.667 16.62 0.00 42.93 5.34
5727 10699 4.111016 CCAGACGGCGAGCACGTA 62.111 66.667 16.62 0.00 45.68 3.57
5728 10700 2.126618 CAGACGGCGAGCACGTAA 60.127 61.111 16.62 0.00 45.68 3.18
5729 10701 2.126580 AGACGGCGAGCACGTAAC 60.127 61.111 16.62 0.00 45.68 2.50
5730 10702 3.177249 GACGGCGAGCACGTAACC 61.177 66.667 16.62 0.00 45.68 2.85
5731 10703 3.902162 GACGGCGAGCACGTAACCA 62.902 63.158 16.62 0.00 45.68 3.67
5732 10704 2.735478 CGGCGAGCACGTAACCAA 60.735 61.111 0.00 0.00 41.98 3.67
5733 10705 2.858158 GGCGAGCACGTAACCAAC 59.142 61.111 5.23 0.00 41.98 3.77
5734 10706 1.666872 GGCGAGCACGTAACCAACT 60.667 57.895 5.23 0.00 41.98 3.16
5735 10707 1.623973 GGCGAGCACGTAACCAACTC 61.624 60.000 5.23 0.00 41.98 3.01
5736 10708 0.666577 GCGAGCACGTAACCAACTCT 60.667 55.000 5.23 0.00 41.98 3.24
5737 10709 1.337821 CGAGCACGTAACCAACTCTC 58.662 55.000 0.00 0.00 34.56 3.20
5738 10710 1.068472 CGAGCACGTAACCAACTCTCT 60.068 52.381 0.00 0.00 34.56 3.10
5739 10711 2.329379 GAGCACGTAACCAACTCTCTG 58.671 52.381 0.00 0.00 0.00 3.35
5740 10712 0.790814 GCACGTAACCAACTCTCTGC 59.209 55.000 0.00 0.00 0.00 4.26
5741 10713 1.872237 GCACGTAACCAACTCTCTGCA 60.872 52.381 0.00 0.00 0.00 4.41
5742 10714 2.688507 CACGTAACCAACTCTCTGCAT 58.311 47.619 0.00 0.00 0.00 3.96
5743 10715 2.413112 CACGTAACCAACTCTCTGCATG 59.587 50.000 0.00 0.00 0.00 4.06
5744 10716 1.394917 CGTAACCAACTCTCTGCATGC 59.605 52.381 11.82 11.82 0.00 4.06
5745 10717 1.394917 GTAACCAACTCTCTGCATGCG 59.605 52.381 14.09 8.20 0.00 4.73
5746 10718 0.035317 AACCAACTCTCTGCATGCGA 59.965 50.000 14.09 12.21 0.00 5.10
5747 10719 0.671781 ACCAACTCTCTGCATGCGAC 60.672 55.000 14.09 0.00 0.00 5.19
5748 10720 1.690283 CCAACTCTCTGCATGCGACG 61.690 60.000 14.09 4.08 0.00 5.12
5749 10721 1.446792 AACTCTCTGCATGCGACGG 60.447 57.895 14.09 8.78 0.00 4.79
5750 10722 2.584418 CTCTCTGCATGCGACGGG 60.584 66.667 14.09 4.00 0.00 5.28
5751 10723 4.819761 TCTCTGCATGCGACGGGC 62.820 66.667 14.09 0.00 43.96 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.865745 CCTATGCTTGTTTCTACTGACCG 59.134 47.826 0.00 0.00 0.00 4.79
1 2 3.623510 GCCTATGCTTGTTTCTACTGACC 59.376 47.826 0.00 0.00 33.53 4.02
2 3 3.623510 GGCCTATGCTTGTTTCTACTGAC 59.376 47.826 0.00 0.00 37.74 3.51
3 4 3.678806 CGGCCTATGCTTGTTTCTACTGA 60.679 47.826 0.00 0.00 37.74 3.41
4 5 2.609459 CGGCCTATGCTTGTTTCTACTG 59.391 50.000 0.00 0.00 37.74 2.74
5 6 2.236395 ACGGCCTATGCTTGTTTCTACT 59.764 45.455 0.00 0.00 37.74 2.57
6 7 2.608090 GACGGCCTATGCTTGTTTCTAC 59.392 50.000 0.00 0.00 37.74 2.59
7 8 2.737359 CGACGGCCTATGCTTGTTTCTA 60.737 50.000 0.00 0.00 37.74 2.10
8 9 1.739067 GACGGCCTATGCTTGTTTCT 58.261 50.000 0.00 0.00 37.74 2.52
9 10 0.373716 CGACGGCCTATGCTTGTTTC 59.626 55.000 0.00 0.00 37.74 2.78
10 11 0.036765 TCGACGGCCTATGCTTGTTT 60.037 50.000 0.00 0.00 37.74 2.83
11 12 0.460284 CTCGACGGCCTATGCTTGTT 60.460 55.000 0.00 0.00 37.74 2.83
12 13 1.141881 CTCGACGGCCTATGCTTGT 59.858 57.895 0.00 0.00 37.74 3.16
13 14 2.240500 GCTCGACGGCCTATGCTTG 61.241 63.158 0.00 0.00 37.74 4.01
14 15 2.107141 GCTCGACGGCCTATGCTT 59.893 61.111 0.00 0.00 37.74 3.91
15 16 2.835431 AGCTCGACGGCCTATGCT 60.835 61.111 0.00 0.04 37.74 3.79
16 17 2.355244 GAGCTCGACGGCCTATGC 60.355 66.667 0.00 0.00 0.00 3.14
17 18 1.739338 AAGGAGCTCGACGGCCTATG 61.739 60.000 7.83 0.00 0.00 2.23
18 19 1.455959 AAGGAGCTCGACGGCCTAT 60.456 57.895 7.83 0.00 0.00 2.57
19 20 2.044252 AAGGAGCTCGACGGCCTA 60.044 61.111 7.83 0.00 0.00 3.93
20 21 3.764466 CAAGGAGCTCGACGGCCT 61.764 66.667 7.83 0.00 0.00 5.19
21 22 3.591254 AACAAGGAGCTCGACGGCC 62.591 63.158 7.83 0.00 0.00 6.13
22 23 1.228657 AAAACAAGGAGCTCGACGGC 61.229 55.000 7.83 0.00 0.00 5.68
23 24 0.512952 CAAAACAAGGAGCTCGACGG 59.487 55.000 7.83 0.00 0.00 4.79
24 25 0.110644 GCAAAACAAGGAGCTCGACG 60.111 55.000 7.83 0.18 0.00 5.12
25 26 0.238553 GGCAAAACAAGGAGCTCGAC 59.761 55.000 7.83 0.00 0.00 4.20
26 27 0.108585 AGGCAAAACAAGGAGCTCGA 59.891 50.000 7.83 0.00 0.00 4.04
27 28 0.239347 CAGGCAAAACAAGGAGCTCG 59.761 55.000 7.83 0.00 0.00 5.03
28 29 0.600057 CCAGGCAAAACAAGGAGCTC 59.400 55.000 4.71 4.71 0.00 4.09
29 30 1.466851 GCCAGGCAAAACAAGGAGCT 61.467 55.000 6.55 0.00 0.00 4.09
30 31 1.005748 GCCAGGCAAAACAAGGAGC 60.006 57.895 6.55 0.00 0.00 4.70
31 32 1.286880 CGCCAGGCAAAACAAGGAG 59.713 57.895 13.30 0.00 0.00 3.69
32 33 1.452145 GACGCCAGGCAAAACAAGGA 61.452 55.000 13.30 0.00 0.00 3.36
33 34 1.007387 GACGCCAGGCAAAACAAGG 60.007 57.895 13.30 0.00 0.00 3.61
34 35 1.370414 CGACGCCAGGCAAAACAAG 60.370 57.895 13.30 0.00 0.00 3.16
35 36 1.377366 TTCGACGCCAGGCAAAACAA 61.377 50.000 13.30 0.00 0.00 2.83
36 37 1.377366 TTTCGACGCCAGGCAAAACA 61.377 50.000 13.30 0.00 0.00 2.83
37 38 0.248702 TTTTCGACGCCAGGCAAAAC 60.249 50.000 13.30 0.00 0.00 2.43
38 39 0.671251 ATTTTCGACGCCAGGCAAAA 59.329 45.000 13.30 10.91 0.00 2.44
39 40 0.039617 CATTTTCGACGCCAGGCAAA 60.040 50.000 13.30 4.14 0.00 3.68
40 41 1.578926 CATTTTCGACGCCAGGCAA 59.421 52.632 13.30 0.00 0.00 4.52
41 42 2.331893 CCATTTTCGACGCCAGGCA 61.332 57.895 13.30 0.00 0.00 4.75
42 43 1.376609 ATCCATTTTCGACGCCAGGC 61.377 55.000 0.00 0.00 0.00 4.85
43 44 1.094785 AATCCATTTTCGACGCCAGG 58.905 50.000 0.00 0.00 0.00 4.45
44 45 1.202177 CCAATCCATTTTCGACGCCAG 60.202 52.381 0.00 0.00 0.00 4.85
45 46 0.808125 CCAATCCATTTTCGACGCCA 59.192 50.000 0.00 0.00 0.00 5.69
46 47 0.525455 GCCAATCCATTTTCGACGCC 60.525 55.000 0.00 0.00 0.00 5.68
47 48 0.451783 AGCCAATCCATTTTCGACGC 59.548 50.000 0.00 0.00 0.00 5.19
48 49 1.468520 ACAGCCAATCCATTTTCGACG 59.531 47.619 0.00 0.00 0.00 5.12
49 50 2.159379 GGACAGCCAATCCATTTTCGAC 60.159 50.000 0.00 0.00 36.15 4.20
50 51 2.091541 GGACAGCCAATCCATTTTCGA 58.908 47.619 0.00 0.00 36.15 3.71
51 52 1.134946 GGGACAGCCAATCCATTTTCG 59.865 52.381 1.31 0.00 38.06 3.46
52 53 1.482182 GGGGACAGCCAATCCATTTTC 59.518 52.381 1.31 0.00 38.06 2.29
53 54 1.571955 GGGGACAGCCAATCCATTTT 58.428 50.000 1.31 0.00 38.06 1.82
54 55 0.325577 GGGGGACAGCCAATCCATTT 60.326 55.000 1.31 0.00 38.06 2.32
55 56 1.311059 GGGGGACAGCCAATCCATT 59.689 57.895 1.31 0.00 38.06 3.16
56 57 3.018901 GGGGGACAGCCAATCCAT 58.981 61.111 1.31 0.00 38.06 3.41
57 58 3.727258 CGGGGGACAGCCAATCCA 61.727 66.667 1.31 0.00 38.06 3.41
90 91 2.746277 AGGAAACGGCGATGCACC 60.746 61.111 16.62 9.47 0.00 5.01
91 92 2.750888 GGAGGAAACGGCGATGCAC 61.751 63.158 16.62 5.86 0.00 4.57
92 93 2.435938 GGAGGAAACGGCGATGCA 60.436 61.111 16.62 0.00 0.00 3.96
93 94 3.202706 GGGAGGAAACGGCGATGC 61.203 66.667 16.62 7.45 0.00 3.91
94 95 2.890474 CGGGAGGAAACGGCGATG 60.890 66.667 16.62 0.00 0.00 3.84
114 115 3.564218 ATGGAGATGGAGCCCGCC 61.564 66.667 0.00 0.00 0.00 6.13
115 116 2.281345 CATGGAGATGGAGCCCGC 60.281 66.667 0.00 0.00 0.00 6.13
116 117 2.281345 GCATGGAGATGGAGCCCG 60.281 66.667 0.00 0.00 0.00 6.13
117 118 0.894184 CATGCATGGAGATGGAGCCC 60.894 60.000 19.40 0.00 32.78 5.19
118 119 1.524863 GCATGCATGGAGATGGAGCC 61.525 60.000 27.34 3.43 32.78 4.70
119 120 1.853114 CGCATGCATGGAGATGGAGC 61.853 60.000 27.34 9.17 32.78 4.70
120 121 0.534427 ACGCATGCATGGAGATGGAG 60.534 55.000 27.34 4.53 32.78 3.86
121 122 0.758123 TACGCATGCATGGAGATGGA 59.242 50.000 27.34 0.00 33.95 3.41
122 123 0.870393 GTACGCATGCATGGAGATGG 59.130 55.000 27.34 0.91 0.00 3.51
123 124 0.509929 CGTACGCATGCATGGAGATG 59.490 55.000 27.34 12.22 0.00 2.90
124 125 0.104855 ACGTACGCATGCATGGAGAT 59.895 50.000 27.34 5.59 0.00 2.75
125 126 0.805711 CACGTACGCATGCATGGAGA 60.806 55.000 27.34 9.04 0.00 3.71
126 127 1.637934 CACGTACGCATGCATGGAG 59.362 57.895 27.34 12.64 0.00 3.86
127 128 2.460275 GCACGTACGCATGCATGGA 61.460 57.895 27.34 0.00 41.65 3.41
128 129 2.023181 GCACGTACGCATGCATGG 59.977 61.111 27.34 19.00 41.65 3.66
129 130 2.023181 GGCACGTACGCATGCATG 59.977 61.111 26.00 22.70 43.93 4.06
130 131 3.202001 GGGCACGTACGCATGCAT 61.202 61.111 26.00 4.54 43.93 3.96
151 152 3.259633 AAACCTCCAGCTCCAGCCG 62.260 63.158 0.00 0.00 43.38 5.52
152 153 1.377856 GAAACCTCCAGCTCCAGCC 60.378 63.158 0.00 0.00 43.38 4.85
153 154 0.676151 CTGAAACCTCCAGCTCCAGC 60.676 60.000 0.00 0.00 42.49 4.85
154 155 3.547567 CTGAAACCTCCAGCTCCAG 57.452 57.895 0.00 0.00 0.00 3.86
160 161 1.466167 CATCGTTGCTGAAACCTCCAG 59.534 52.381 0.00 0.00 35.13 3.86
161 162 1.071542 TCATCGTTGCTGAAACCTCCA 59.928 47.619 0.00 0.00 35.13 3.86
162 163 1.464997 GTCATCGTTGCTGAAACCTCC 59.535 52.381 0.00 0.00 35.13 4.30
163 164 1.464997 GGTCATCGTTGCTGAAACCTC 59.535 52.381 0.00 0.00 35.13 3.85
164 165 1.072331 AGGTCATCGTTGCTGAAACCT 59.928 47.619 0.00 0.00 35.13 3.50
165 166 1.523758 AGGTCATCGTTGCTGAAACC 58.476 50.000 0.00 0.00 35.13 3.27
166 167 2.548057 TGAAGGTCATCGTTGCTGAAAC 59.452 45.455 0.00 0.00 35.25 2.78
167 168 2.807967 CTGAAGGTCATCGTTGCTGAAA 59.192 45.455 0.00 0.00 0.00 2.69
168 169 2.416747 CTGAAGGTCATCGTTGCTGAA 58.583 47.619 0.00 0.00 0.00 3.02
169 170 1.941209 GCTGAAGGTCATCGTTGCTGA 60.941 52.381 0.00 0.00 0.00 4.26
170 171 0.445436 GCTGAAGGTCATCGTTGCTG 59.555 55.000 0.00 0.00 0.00 4.41
171 172 0.674895 GGCTGAAGGTCATCGTTGCT 60.675 55.000 0.00 0.00 0.00 3.91
172 173 0.955428 TGGCTGAAGGTCATCGTTGC 60.955 55.000 0.00 0.00 0.00 4.17
173 174 0.798776 GTGGCTGAAGGTCATCGTTG 59.201 55.000 0.00 0.00 0.00 4.10
174 175 0.670546 CGTGGCTGAAGGTCATCGTT 60.671 55.000 0.00 0.00 0.00 3.85
175 176 1.079819 CGTGGCTGAAGGTCATCGT 60.080 57.895 0.00 0.00 0.00 3.73
176 177 2.456119 GCGTGGCTGAAGGTCATCG 61.456 63.158 0.00 0.00 0.00 3.84
177 178 0.745845 ATGCGTGGCTGAAGGTCATC 60.746 55.000 0.00 0.00 0.00 2.92
178 179 0.322816 AATGCGTGGCTGAAGGTCAT 60.323 50.000 0.00 0.00 0.00 3.06
179 180 1.073025 AATGCGTGGCTGAAGGTCA 59.927 52.632 0.00 0.00 0.00 4.02
180 181 1.503542 CAATGCGTGGCTGAAGGTC 59.496 57.895 0.00 0.00 0.00 3.85
181 182 2.629656 GCAATGCGTGGCTGAAGGT 61.630 57.895 0.00 0.00 0.00 3.50
182 183 2.180017 GCAATGCGTGGCTGAAGG 59.820 61.111 0.00 0.00 0.00 3.46
189 190 4.403137 CACCGTGGCAATGCGTGG 62.403 66.667 0.00 3.19 0.00 4.94
210 211 3.384532 CTGGCATGGCACCCAACC 61.385 66.667 19.43 0.00 36.95 3.77
211 212 4.073200 GCTGGCATGGCACCCAAC 62.073 66.667 19.43 1.88 36.95 3.77
212 213 4.304413 AGCTGGCATGGCACCCAA 62.304 61.111 19.43 0.00 36.95 4.12
223 224 2.588314 CTGATCGGAGCAGCTGGC 60.588 66.667 17.12 7.98 45.30 4.85
224 225 1.088340 CAACTGATCGGAGCAGCTGG 61.088 60.000 22.17 8.82 36.86 4.85
225 226 0.390866 ACAACTGATCGGAGCAGCTG 60.391 55.000 22.17 21.69 36.86 4.24
226 227 0.108424 GACAACTGATCGGAGCAGCT 60.108 55.000 22.17 8.32 36.86 4.24
227 228 0.390340 TGACAACTGATCGGAGCAGC 60.390 55.000 22.17 7.34 36.86 5.25
228 229 2.200067 GATGACAACTGATCGGAGCAG 58.800 52.381 20.81 20.81 39.26 4.24
229 230 1.469767 CGATGACAACTGATCGGAGCA 60.470 52.381 9.00 0.00 38.23 4.26
230 231 1.203928 CGATGACAACTGATCGGAGC 58.796 55.000 9.00 0.00 38.23 4.70
231 232 1.203928 GCGATGACAACTGATCGGAG 58.796 55.000 9.00 2.82 41.44 4.63
232 233 0.530288 TGCGATGACAACTGATCGGA 59.470 50.000 9.00 0.00 41.44 4.55
233 234 0.647410 GTGCGATGACAACTGATCGG 59.353 55.000 0.00 0.00 41.44 4.18
234 235 1.585668 GAGTGCGATGACAACTGATCG 59.414 52.381 0.00 0.00 43.49 3.69
235 236 1.585668 CGAGTGCGATGACAACTGATC 59.414 52.381 0.00 0.00 40.82 2.92
236 237 1.202348 TCGAGTGCGATGACAACTGAT 59.798 47.619 0.00 0.00 42.51 2.90
237 238 0.596082 TCGAGTGCGATGACAACTGA 59.404 50.000 0.00 0.00 42.51 3.41
238 239 3.107017 TCGAGTGCGATGACAACTG 57.893 52.632 0.00 0.00 42.51 3.16
248 249 4.498520 ACTGCCCGATCGAGTGCG 62.499 66.667 18.66 13.70 39.35 5.34
249 250 2.887568 CACTGCCCGATCGAGTGC 60.888 66.667 18.66 16.19 31.31 4.40
250 251 1.517257 GACACTGCCCGATCGAGTG 60.517 63.158 25.42 25.42 42.39 3.51
251 252 2.885861 GACACTGCCCGATCGAGT 59.114 61.111 18.66 9.58 0.00 4.18
252 253 2.278206 CGACACTGCCCGATCGAG 60.278 66.667 18.66 3.84 36.70 4.04
253 254 3.822192 CCGACACTGCCCGATCGA 61.822 66.667 18.66 0.00 36.70 3.59
255 256 4.148825 AGCCGACACTGCCCGATC 62.149 66.667 0.00 0.00 0.00 3.69
256 257 4.457496 CAGCCGACACTGCCCGAT 62.457 66.667 0.00 0.00 0.00 4.18
272 273 4.408821 ATCGCGGAAGGGCAAGCA 62.409 61.111 6.13 0.00 44.70 3.91
273 274 3.577313 GATCGCGGAAGGGCAAGC 61.577 66.667 6.13 0.00 44.70 4.01
274 275 2.125147 TGATCGCGGAAGGGCAAG 60.125 61.111 6.13 0.00 44.70 4.01
275 276 2.435938 GTGATCGCGGAAGGGCAA 60.436 61.111 6.13 0.00 44.70 4.52
276 277 3.371097 GAGTGATCGCGGAAGGGCA 62.371 63.158 6.13 0.00 44.70 5.36
277 278 2.586357 GAGTGATCGCGGAAGGGC 60.586 66.667 6.13 0.00 44.70 5.19
278 279 1.519455 GTGAGTGATCGCGGAAGGG 60.519 63.158 6.13 0.00 46.71 3.95
279 280 1.874019 CGTGAGTGATCGCGGAAGG 60.874 63.158 6.13 0.00 39.62 3.46
280 281 2.508891 GCGTGAGTGATCGCGGAAG 61.509 63.158 6.13 0.00 42.79 3.46
281 282 2.506217 GCGTGAGTGATCGCGGAA 60.506 61.111 6.13 0.00 42.79 4.30
286 287 1.061131 GAAATGTGGCGTGAGTGATCG 59.939 52.381 0.00 0.00 0.00 3.69
287 288 2.076100 TGAAATGTGGCGTGAGTGATC 58.924 47.619 0.00 0.00 0.00 2.92
288 289 1.806542 GTGAAATGTGGCGTGAGTGAT 59.193 47.619 0.00 0.00 0.00 3.06
289 290 1.202639 AGTGAAATGTGGCGTGAGTGA 60.203 47.619 0.00 0.00 0.00 3.41
290 291 1.229428 AGTGAAATGTGGCGTGAGTG 58.771 50.000 0.00 0.00 0.00 3.51
291 292 2.224185 TGTAGTGAAATGTGGCGTGAGT 60.224 45.455 0.00 0.00 0.00 3.41
292 293 2.412870 TGTAGTGAAATGTGGCGTGAG 58.587 47.619 0.00 0.00 0.00 3.51
293 294 2.535012 TGTAGTGAAATGTGGCGTGA 57.465 45.000 0.00 0.00 0.00 4.35
294 295 2.289274 TGTTGTAGTGAAATGTGGCGTG 59.711 45.455 0.00 0.00 0.00 5.34
295 296 2.289547 GTGTTGTAGTGAAATGTGGCGT 59.710 45.455 0.00 0.00 0.00 5.68
296 297 2.661709 CGTGTTGTAGTGAAATGTGGCG 60.662 50.000 0.00 0.00 0.00 5.69
297 298 2.289547 ACGTGTTGTAGTGAAATGTGGC 59.710 45.455 0.00 0.00 0.00 5.01
298 299 4.375606 CGTACGTGTTGTAGTGAAATGTGG 60.376 45.833 7.22 0.00 32.51 4.17
299 300 4.207635 ACGTACGTGTTGTAGTGAAATGTG 59.792 41.667 22.14 0.00 32.51 3.21
300 301 4.362279 ACGTACGTGTTGTAGTGAAATGT 58.638 39.130 22.14 0.00 32.51 2.71
301 302 4.441744 TGACGTACGTGTTGTAGTGAAATG 59.558 41.667 28.16 0.00 32.51 2.32
302 303 4.609947 TGACGTACGTGTTGTAGTGAAAT 58.390 39.130 28.16 0.00 32.51 2.17
303 304 4.026293 TGACGTACGTGTTGTAGTGAAA 57.974 40.909 28.16 0.00 32.51 2.69
304 305 3.689309 TGACGTACGTGTTGTAGTGAA 57.311 42.857 28.16 0.00 32.51 3.18
305 306 3.902261 ATGACGTACGTGTTGTAGTGA 57.098 42.857 28.16 0.00 32.51 3.41
434 435 2.299867 AGCAACAATCGGAGGCATTTTT 59.700 40.909 0.00 0.00 0.00 1.94
599 600 3.308595 CGTTGTTGCACACTAGTCAAGAA 59.691 43.478 0.00 0.00 0.00 2.52
602 603 2.605818 GTCGTTGTTGCACACTAGTCAA 59.394 45.455 0.00 0.00 0.00 3.18
603 604 2.198406 GTCGTTGTTGCACACTAGTCA 58.802 47.619 0.00 0.00 0.00 3.41
604 605 2.198406 TGTCGTTGTTGCACACTAGTC 58.802 47.619 0.00 0.00 0.00 2.59
605 606 2.303163 TGTCGTTGTTGCACACTAGT 57.697 45.000 0.00 0.00 0.00 2.57
850 1442 7.010339 AGTTGCTAGTTCCTTCAGAATACTT 57.990 36.000 0.00 0.00 36.69 2.24
1766 2364 4.706476 CAGCTCCCAATCCAAATCTAACAA 59.294 41.667 0.00 0.00 0.00 2.83
2156 2754 5.240183 CCCATATAGCATTTCTTGTGTCCAG 59.760 44.000 0.00 0.00 0.00 3.86
2447 4002 4.002906 TGACGCAATAGAAGTGTTTCCT 57.997 40.909 0.00 0.00 33.64 3.36
2644 4396 8.494433 ACCATGTGAATCCAAGTAGTATAATGT 58.506 33.333 0.00 0.00 0.00 2.71
3368 7999 6.348498 TGATGAATAAAGATCACCATCACGT 58.652 36.000 0.00 0.00 36.48 4.49
3400 8031 5.276461 TGGCCTTCCTTTCTTTTCTTTTC 57.724 39.130 3.32 0.00 0.00 2.29
3504 8135 0.036732 TGCCGAAGCTCCATGTTCTT 59.963 50.000 0.00 0.00 40.80 2.52
4446 9103 8.195165 AGCTATGATAGTACCTTAGAATGCAA 57.805 34.615 0.92 0.00 0.00 4.08
4577 9234 3.805066 TTGTTGGGATCCACATTCTCA 57.195 42.857 15.23 0.00 30.78 3.27
4791 9448 3.821033 GGAAAAGGCATGTACAACTCACT 59.179 43.478 0.00 0.00 0.00 3.41
5285 10255 1.969923 CCCAGGCATTTTTCCAGAACA 59.030 47.619 0.00 0.00 0.00 3.18
5312 10282 5.809719 TTTTTCCACAATGCCTCAAAAAC 57.190 34.783 0.00 0.00 0.00 2.43
5417 10388 2.233922 GAGATGGTCACGAAGGGAAAGA 59.766 50.000 0.00 0.00 0.00 2.52
5496 10468 3.465742 TTGCAGGCACTTTAAAATGCA 57.534 38.095 21.79 13.69 43.93 3.96
5539 10511 2.047274 GCAGCTTAGTGGCGACCA 60.047 61.111 0.00 0.00 37.29 4.02
5540 10512 2.103042 CAGCAGCTTAGTGGCGACC 61.103 63.158 0.00 0.00 37.29 4.79
5541 10513 2.103042 CCAGCAGCTTAGTGGCGAC 61.103 63.158 0.00 0.00 37.29 5.19
5542 10514 1.254975 TACCAGCAGCTTAGTGGCGA 61.255 55.000 0.00 0.00 34.40 5.54
5543 10515 1.084370 GTACCAGCAGCTTAGTGGCG 61.084 60.000 0.00 0.00 34.40 5.69
5544 10516 1.084370 CGTACCAGCAGCTTAGTGGC 61.084 60.000 0.00 0.00 34.40 5.01
5545 10517 0.246635 ACGTACCAGCAGCTTAGTGG 59.753 55.000 0.00 4.50 37.38 4.00
5546 10518 2.163815 AGTACGTACCAGCAGCTTAGTG 59.836 50.000 21.80 0.00 0.00 2.74
5547 10519 2.444421 AGTACGTACCAGCAGCTTAGT 58.556 47.619 21.80 0.00 0.00 2.24
5548 10520 3.626670 AGTAGTACGTACCAGCAGCTTAG 59.373 47.826 21.80 0.00 31.06 2.18
5549 10521 3.614092 AGTAGTACGTACCAGCAGCTTA 58.386 45.455 21.80 2.67 31.06 3.09
5550 10522 2.444421 AGTAGTACGTACCAGCAGCTT 58.556 47.619 21.80 3.67 31.06 3.74
5551 10523 2.125773 AGTAGTACGTACCAGCAGCT 57.874 50.000 21.80 8.44 31.06 4.24
5552 10524 2.286891 GCTAGTAGTACGTACCAGCAGC 60.287 54.545 21.80 19.72 43.65 5.25
5553 10525 2.290093 GGCTAGTAGTACGTACCAGCAG 59.710 54.545 26.68 18.97 45.38 4.24
5554 10526 2.092753 AGGCTAGTAGTACGTACCAGCA 60.093 50.000 26.68 12.07 45.38 4.41
5555 10527 2.547634 GAGGCTAGTAGTACGTACCAGC 59.452 54.545 21.80 21.70 43.51 4.85
5556 10528 2.799412 CGAGGCTAGTAGTACGTACCAG 59.201 54.545 21.80 14.31 31.06 4.00
5557 10529 2.168521 ACGAGGCTAGTAGTACGTACCA 59.831 50.000 21.80 5.84 31.06 3.25
5558 10530 2.827652 ACGAGGCTAGTAGTACGTACC 58.172 52.381 21.80 7.94 31.06 3.34
5559 10531 4.026145 CAGAACGAGGCTAGTAGTACGTAC 60.026 50.000 18.10 18.10 33.76 3.67
5560 10532 4.115516 CAGAACGAGGCTAGTAGTACGTA 58.884 47.826 14.73 0.00 33.76 3.57
5561 10533 2.935201 CAGAACGAGGCTAGTAGTACGT 59.065 50.000 0.00 10.73 35.56 3.57
5562 10534 2.286301 GCAGAACGAGGCTAGTAGTACG 60.286 54.545 0.00 5.34 0.00 3.67
5563 10535 2.681848 TGCAGAACGAGGCTAGTAGTAC 59.318 50.000 0.00 0.00 0.00 2.73
5564 10536 2.995283 TGCAGAACGAGGCTAGTAGTA 58.005 47.619 0.00 0.00 0.00 1.82
5565 10537 1.835494 TGCAGAACGAGGCTAGTAGT 58.165 50.000 0.00 0.00 0.00 2.73
5566 10538 2.164624 ACTTGCAGAACGAGGCTAGTAG 59.835 50.000 0.00 0.00 42.67 2.57
5567 10539 2.168496 ACTTGCAGAACGAGGCTAGTA 58.832 47.619 0.00 0.00 42.67 1.82
5568 10540 0.969894 ACTTGCAGAACGAGGCTAGT 59.030 50.000 0.00 0.00 40.38 2.57
5569 10541 2.941453 TACTTGCAGAACGAGGCTAG 57.059 50.000 0.00 0.00 38.54 3.42
5570 10542 3.887621 AATACTTGCAGAACGAGGCTA 57.112 42.857 0.00 0.00 33.55 3.93
5571 10543 2.744202 CAAATACTTGCAGAACGAGGCT 59.256 45.455 0.00 0.00 33.55 4.58
5572 10544 3.122937 CAAATACTTGCAGAACGAGGC 57.877 47.619 0.00 0.00 33.55 4.70
5583 10555 1.062525 GAGCCGGCGCAAATACTTG 59.937 57.895 26.33 0.00 37.52 3.16
5584 10556 2.461110 CGAGCCGGCGCAAATACTT 61.461 57.895 29.85 4.61 37.52 2.24
5585 10557 2.890474 CGAGCCGGCGCAAATACT 60.890 61.111 29.85 5.48 37.52 2.12
5586 10558 3.937062 CCGAGCCGGCGCAAATAC 61.937 66.667 29.85 11.17 41.17 1.89
5603 10575 4.803426 CGCAGGTCTCGGCTGGAC 62.803 72.222 5.79 5.79 31.87 4.02
5606 10578 4.363990 ACACGCAGGTCTCGGCTG 62.364 66.667 0.00 0.00 31.87 4.85
5607 10579 4.057428 GACACGCAGGTCTCGGCT 62.057 66.667 0.00 0.00 34.92 5.52
5609 10581 4.778415 CCGACACGCAGGTCTCGG 62.778 72.222 0.00 0.00 45.92 4.63
5610 10582 4.039357 ACCGACACGCAGGTCTCG 62.039 66.667 3.59 0.00 35.50 4.04
5616 10588 4.129737 ATCCGGACCGACACGCAG 62.130 66.667 17.49 0.00 0.00 5.18
5617 10589 4.429212 CATCCGGACCGACACGCA 62.429 66.667 17.49 0.00 0.00 5.24
5619 10591 4.429212 TGCATCCGGACCGACACG 62.429 66.667 17.49 0.00 0.00 4.49
5620 10592 2.509336 CTGCATCCGGACCGACAC 60.509 66.667 17.49 2.16 0.00 3.67
5621 10593 4.451150 GCTGCATCCGGACCGACA 62.451 66.667 17.49 7.07 0.00 4.35
5630 10602 2.672996 AACACCGTGGCTGCATCC 60.673 61.111 0.00 0.00 0.00 3.51
5631 10603 2.562912 CAACACCGTGGCTGCATC 59.437 61.111 0.50 0.00 0.00 3.91
5632 10604 3.673484 GCAACACCGTGGCTGCAT 61.673 61.111 18.17 0.00 32.63 3.96
5633 10605 4.873810 AGCAACACCGTGGCTGCA 62.874 61.111 22.61 0.00 41.81 4.41
5634 10606 3.137637 AAAGCAACACCGTGGCTGC 62.138 57.895 16.26 16.26 42.67 5.25
5635 10607 1.008538 GAAAGCAACACCGTGGCTG 60.009 57.895 3.03 1.15 42.67 4.85
5636 10608 2.542907 CGAAAGCAACACCGTGGCT 61.543 57.895 3.03 0.00 45.82 4.75
5637 10609 2.051345 CGAAAGCAACACCGTGGC 60.051 61.111 3.03 0.00 31.62 5.01
5674 10646 4.495939 CTCGTCGTCGTCGTCCCG 62.496 72.222 11.41 3.92 38.33 5.14
5675 10647 3.114616 TCTCGTCGTCGTCGTCCC 61.115 66.667 11.41 0.00 38.33 4.46
5676 10648 2.095469 GTCTCGTCGTCGTCGTCC 59.905 66.667 11.41 0.00 38.33 4.79
5677 10649 2.203140 TTCGTCTCGTCGTCGTCGTC 62.203 60.000 11.41 0.00 38.33 4.20
5678 10650 1.821241 TTTCGTCTCGTCGTCGTCGT 61.821 55.000 11.41 0.00 38.33 4.34
5679 10651 0.517946 ATTTCGTCTCGTCGTCGTCG 60.518 55.000 5.50 5.50 38.33 5.12
5680 10652 1.572278 GAATTTCGTCTCGTCGTCGTC 59.428 52.381 1.33 0.00 38.33 4.20
5681 10653 1.196354 AGAATTTCGTCTCGTCGTCGT 59.804 47.619 1.33 0.00 38.33 4.34
5682 10654 1.832993 GAGAATTTCGTCTCGTCGTCG 59.167 52.381 0.00 0.00 35.04 5.12
5683 10655 2.847901 TGAGAATTTCGTCTCGTCGTC 58.152 47.619 0.00 0.00 46.00 4.20
5684 10656 2.978489 GTTGAGAATTTCGTCTCGTCGT 59.022 45.455 0.00 0.00 46.00 4.34
5685 10657 2.341760 GGTTGAGAATTTCGTCTCGTCG 59.658 50.000 0.00 0.00 46.00 5.12
5686 10658 2.341760 CGGTTGAGAATTTCGTCTCGTC 59.658 50.000 0.00 0.00 46.00 4.20
5687 10659 2.030540 TCGGTTGAGAATTTCGTCTCGT 60.031 45.455 0.00 0.00 46.00 4.18
5688 10660 2.592194 TCGGTTGAGAATTTCGTCTCG 58.408 47.619 0.00 0.00 46.00 4.04
5689 10661 3.552294 GGATCGGTTGAGAATTTCGTCTC 59.448 47.826 0.00 0.00 43.75 3.36
5690 10662 3.056107 TGGATCGGTTGAGAATTTCGTCT 60.056 43.478 0.00 0.00 0.00 4.18
5691 10663 3.259064 TGGATCGGTTGAGAATTTCGTC 58.741 45.455 0.00 0.00 0.00 4.20
5692 10664 3.056107 TCTGGATCGGTTGAGAATTTCGT 60.056 43.478 0.00 0.00 0.00 3.85
5693 10665 3.307242 GTCTGGATCGGTTGAGAATTTCG 59.693 47.826 0.00 0.00 0.00 3.46
5694 10666 3.307242 CGTCTGGATCGGTTGAGAATTTC 59.693 47.826 0.00 0.00 0.00 2.17
5695 10667 3.262420 CGTCTGGATCGGTTGAGAATTT 58.738 45.455 0.00 0.00 0.00 1.82
5696 10668 2.418746 CCGTCTGGATCGGTTGAGAATT 60.419 50.000 0.00 0.00 42.62 2.17
5697 10669 1.137086 CCGTCTGGATCGGTTGAGAAT 59.863 52.381 0.00 0.00 42.62 2.40
5698 10670 0.530744 CCGTCTGGATCGGTTGAGAA 59.469 55.000 0.00 0.00 42.62 2.87
5699 10671 2.189833 CCGTCTGGATCGGTTGAGA 58.810 57.895 0.00 0.00 42.62 3.27
5700 10672 4.814900 CCGTCTGGATCGGTTGAG 57.185 61.111 0.00 0.00 42.62 3.02
5706 10678 4.193334 TGCTCGCCGTCTGGATCG 62.193 66.667 0.00 0.00 37.49 3.69
5707 10679 2.583593 GTGCTCGCCGTCTGGATC 60.584 66.667 0.00 0.00 37.49 3.36
5708 10680 4.498520 CGTGCTCGCCGTCTGGAT 62.499 66.667 0.00 0.00 37.49 3.41
5710 10682 3.620300 TTACGTGCTCGCCGTCTGG 62.620 63.158 8.29 0.00 39.60 3.86
5711 10683 2.126618 TTACGTGCTCGCCGTCTG 60.127 61.111 8.29 0.00 39.60 3.51
5712 10684 2.126580 GTTACGTGCTCGCCGTCT 60.127 61.111 8.29 0.00 39.60 4.18
5713 10685 3.177249 GGTTACGTGCTCGCCGTC 61.177 66.667 8.29 0.00 39.60 4.79
5714 10686 3.502990 TTGGTTACGTGCTCGCCGT 62.503 57.895 8.29 9.59 42.06 5.68
5715 10687 2.735478 TTGGTTACGTGCTCGCCG 60.735 61.111 8.29 0.00 41.18 6.46
5716 10688 1.623973 GAGTTGGTTACGTGCTCGCC 61.624 60.000 8.29 2.20 41.18 5.54
5717 10689 0.666577 AGAGTTGGTTACGTGCTCGC 60.667 55.000 8.29 0.00 41.18 5.03
5718 10690 1.068472 AGAGAGTTGGTTACGTGCTCG 60.068 52.381 6.63 6.63 43.34 5.03
5719 10691 2.329379 CAGAGAGTTGGTTACGTGCTC 58.671 52.381 0.00 0.00 0.00 4.26
5720 10692 1.605712 GCAGAGAGTTGGTTACGTGCT 60.606 52.381 0.00 0.00 0.00 4.40
5721 10693 0.790814 GCAGAGAGTTGGTTACGTGC 59.209 55.000 0.00 0.00 0.00 5.34
5722 10694 2.148916 TGCAGAGAGTTGGTTACGTG 57.851 50.000 0.00 0.00 0.00 4.49
5723 10695 2.688507 CATGCAGAGAGTTGGTTACGT 58.311 47.619 0.00 0.00 0.00 3.57
5724 10696 1.394917 GCATGCAGAGAGTTGGTTACG 59.605 52.381 14.21 0.00 0.00 3.18
5725 10697 1.394917 CGCATGCAGAGAGTTGGTTAC 59.605 52.381 19.57 0.00 0.00 2.50
5726 10698 1.275010 TCGCATGCAGAGAGTTGGTTA 59.725 47.619 19.57 0.00 0.00 2.85
5727 10699 0.035317 TCGCATGCAGAGAGTTGGTT 59.965 50.000 19.57 0.00 0.00 3.67
5728 10700 0.671781 GTCGCATGCAGAGAGTTGGT 60.672 55.000 19.57 0.00 0.00 3.67
5729 10701 1.690283 CGTCGCATGCAGAGAGTTGG 61.690 60.000 19.57 0.00 0.00 3.77
5730 10702 1.690283 CCGTCGCATGCAGAGAGTTG 61.690 60.000 19.57 0.00 0.00 3.16
5731 10703 1.446792 CCGTCGCATGCAGAGAGTT 60.447 57.895 19.57 0.00 0.00 3.01
5732 10704 2.182791 CCGTCGCATGCAGAGAGT 59.817 61.111 19.57 0.00 0.00 3.24
5733 10705 2.584418 CCCGTCGCATGCAGAGAG 60.584 66.667 19.57 11.93 0.00 3.20
5734 10706 4.819761 GCCCGTCGCATGCAGAGA 62.820 66.667 19.57 3.84 37.47 3.10
5750 10722 1.859427 TATATCGTCTCCGGCGTGGC 61.859 60.000 6.01 0.00 37.80 5.01
5751 10723 0.809385 ATATATCGTCTCCGGCGTGG 59.191 55.000 6.01 0.00 40.09 4.94
5752 10724 2.031807 CCTATATATCGTCTCCGGCGTG 59.968 54.545 6.01 0.00 33.95 5.34
5753 10725 2.286872 CCTATATATCGTCTCCGGCGT 58.713 52.381 6.01 0.00 33.95 5.68
5754 10726 2.286872 ACCTATATATCGTCTCCGGCG 58.713 52.381 0.00 0.00 33.95 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.