Multiple sequence alignment - TraesCS7A01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G055400 chr7A 100.000 3124 0 0 1 3124 26770858 26767735 0.000000e+00 5770.0
1 TraesCS7A01G055400 chr4A 86.700 2609 149 88 600 3116 710244999 710242497 0.000000e+00 2713.0
2 TraesCS7A01G055400 chr4A 90.909 44 1 3 783 826 603532896 603532856 4.350000e-04 56.5
3 TraesCS7A01G055400 chr7D 92.402 1553 66 33 621 2132 25819657 25818116 0.000000e+00 2167.0
4 TraesCS7A01G055400 chr7D 84.704 778 38 26 2182 2934 25818103 25817382 0.000000e+00 702.0
5 TraesCS7A01G055400 chr7D 82.723 191 28 3 2915 3105 36906183 36906368 6.930000e-37 165.0
6 TraesCS7A01G055400 chrUn 96.857 509 16 0 1 509 46154511 46155019 0.000000e+00 852.0
7 TraesCS7A01G055400 chr1D 96.857 509 16 0 1 509 482919266 482918758 0.000000e+00 852.0
8 TraesCS7A01G055400 chr3D 96.857 509 15 1 1 509 20902114 20902621 0.000000e+00 850.0
9 TraesCS7A01G055400 chr5B 96.660 509 17 0 1 509 546418240 546418748 0.000000e+00 846.0
10 TraesCS7A01G055400 chr4D 96.660 509 17 0 1 509 498967361 498967869 0.000000e+00 846.0
11 TraesCS7A01G055400 chr2B 96.660 509 17 0 1 509 474447788 474448296 0.000000e+00 846.0
12 TraesCS7A01G055400 chr2A 96.267 509 19 0 1 509 734874790 734875298 0.000000e+00 835.0
13 TraesCS7A01G055400 chr2D 96.071 509 20 0 1 509 527527871 527527363 0.000000e+00 830.0
14 TraesCS7A01G055400 chr6A 96.071 509 19 1 1 509 558099015 558099522 0.000000e+00 828.0
15 TraesCS7A01G055400 chr5A 82.716 81 14 0 3004 3084 600234321 600234401 4.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G055400 chr7A 26767735 26770858 3123 True 5770.0 5770 100.000 1 3124 1 chr7A.!!$R1 3123
1 TraesCS7A01G055400 chr4A 710242497 710244999 2502 True 2713.0 2713 86.700 600 3116 1 chr4A.!!$R2 2516
2 TraesCS7A01G055400 chr7D 25817382 25819657 2275 True 1434.5 2167 88.553 621 2934 2 chr7D.!!$R1 2313
3 TraesCS7A01G055400 chrUn 46154511 46155019 508 False 852.0 852 96.857 1 509 1 chrUn.!!$F1 508
4 TraesCS7A01G055400 chr1D 482918758 482919266 508 True 852.0 852 96.857 1 509 1 chr1D.!!$R1 508
5 TraesCS7A01G055400 chr3D 20902114 20902621 507 False 850.0 850 96.857 1 509 1 chr3D.!!$F1 508
6 TraesCS7A01G055400 chr5B 546418240 546418748 508 False 846.0 846 96.660 1 509 1 chr5B.!!$F1 508
7 TraesCS7A01G055400 chr4D 498967361 498967869 508 False 846.0 846 96.660 1 509 1 chr4D.!!$F1 508
8 TraesCS7A01G055400 chr2B 474447788 474448296 508 False 846.0 846 96.660 1 509 1 chr2B.!!$F1 508
9 TraesCS7A01G055400 chr2A 734874790 734875298 508 False 835.0 835 96.267 1 509 1 chr2A.!!$F1 508
10 TraesCS7A01G055400 chr2D 527527363 527527871 508 True 830.0 830 96.071 1 509 1 chr2D.!!$R1 508
11 TraesCS7A01G055400 chr6A 558099015 558099522 507 False 828.0 828 96.071 1 509 1 chr6A.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 551 0.037326 TTGCACCGCAACAAACCAAA 60.037 45.0 0.0 0.0 43.99 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2505 2622 0.739813 GTACCGACAGTCACCATGGC 60.74 60.0 13.04 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.357034 GCGGACAGGCTTCAACGA 60.357 61.111 0.00 0.00 0.00 3.85
48 49 0.804989 CAACGAAGAGGATGGCCAAC 59.195 55.000 10.96 7.12 36.29 3.77
196 197 2.093973 CACCGACTGGAGTAGCTTCAAT 60.094 50.000 0.00 0.00 39.21 2.57
292 293 4.541705 TGTTGGTTTCTTGGGAGATTTGA 58.458 39.130 0.00 0.00 0.00 2.69
444 445 0.754472 TAGGCTTATCGGTTTCGGGG 59.246 55.000 0.00 0.00 36.95 5.73
479 480 5.349270 CGGTCGGTCATGTAATTCAAAACTA 59.651 40.000 0.00 0.00 0.00 2.24
510 511 6.949352 TTAATGAGATGAGGCAAATCTTCC 57.051 37.500 3.79 0.00 34.50 3.46
511 512 2.910199 TGAGATGAGGCAAATCTTCCG 58.090 47.619 3.79 0.00 34.50 4.30
512 513 2.216898 GAGATGAGGCAAATCTTCCGG 58.783 52.381 0.00 0.00 34.50 5.14
513 514 0.665298 GATGAGGCAAATCTTCCGGC 59.335 55.000 0.00 0.00 0.00 6.13
514 515 1.097547 ATGAGGCAAATCTTCCGGCG 61.098 55.000 0.00 0.00 0.00 6.46
515 516 1.449601 GAGGCAAATCTTCCGGCGA 60.450 57.895 9.30 0.00 0.00 5.54
516 517 1.432270 GAGGCAAATCTTCCGGCGAG 61.432 60.000 9.30 0.00 0.00 5.03
517 518 2.405191 GCAAATCTTCCGGCGAGC 59.595 61.111 9.30 0.00 0.00 5.03
518 519 2.109126 GCAAATCTTCCGGCGAGCT 61.109 57.895 9.30 0.00 0.00 4.09
519 520 1.648467 GCAAATCTTCCGGCGAGCTT 61.648 55.000 9.30 0.00 0.00 3.74
520 521 0.375106 CAAATCTTCCGGCGAGCTTC 59.625 55.000 9.30 0.00 0.00 3.86
521 522 0.744771 AAATCTTCCGGCGAGCTTCC 60.745 55.000 9.30 0.00 0.00 3.46
522 523 1.617947 AATCTTCCGGCGAGCTTCCT 61.618 55.000 9.30 0.00 0.00 3.36
523 524 1.617947 ATCTTCCGGCGAGCTTCCTT 61.618 55.000 9.30 0.00 0.00 3.36
524 525 1.811679 CTTCCGGCGAGCTTCCTTC 60.812 63.158 9.30 0.00 0.00 3.46
525 526 3.310860 TTCCGGCGAGCTTCCTTCC 62.311 63.158 9.30 0.00 0.00 3.46
526 527 4.082523 CCGGCGAGCTTCCTTCCA 62.083 66.667 9.30 0.00 0.00 3.53
527 528 2.187946 CGGCGAGCTTCCTTCCAT 59.812 61.111 0.00 0.00 0.00 3.41
528 529 1.441729 CGGCGAGCTTCCTTCCATA 59.558 57.895 0.00 0.00 0.00 2.74
529 530 0.598680 CGGCGAGCTTCCTTCCATAG 60.599 60.000 0.00 0.00 0.00 2.23
530 531 0.466124 GGCGAGCTTCCTTCCATAGT 59.534 55.000 0.00 0.00 0.00 2.12
531 532 1.134371 GGCGAGCTTCCTTCCATAGTT 60.134 52.381 0.00 0.00 0.00 2.24
532 533 2.633488 GCGAGCTTCCTTCCATAGTTT 58.367 47.619 0.00 0.00 0.00 2.66
533 534 2.352960 GCGAGCTTCCTTCCATAGTTTG 59.647 50.000 0.00 0.00 0.00 2.93
534 535 2.352960 CGAGCTTCCTTCCATAGTTTGC 59.647 50.000 0.00 0.00 0.00 3.68
535 536 3.347216 GAGCTTCCTTCCATAGTTTGCA 58.653 45.455 0.00 0.00 0.00 4.08
536 537 3.084786 AGCTTCCTTCCATAGTTTGCAC 58.915 45.455 0.00 0.00 0.00 4.57
537 538 2.164422 GCTTCCTTCCATAGTTTGCACC 59.836 50.000 0.00 0.00 0.00 5.01
538 539 2.107950 TCCTTCCATAGTTTGCACCG 57.892 50.000 0.00 0.00 0.00 4.94
539 540 0.451783 CCTTCCATAGTTTGCACCGC 59.548 55.000 0.00 0.00 0.00 5.68
540 541 1.164411 CTTCCATAGTTTGCACCGCA 58.836 50.000 0.00 0.00 36.47 5.69
548 549 3.288484 TTGCACCGCAACAAACCA 58.712 50.000 0.00 0.00 43.99 3.67
549 550 1.591703 TTGCACCGCAACAAACCAA 59.408 47.368 0.00 0.00 43.99 3.67
550 551 0.037326 TTGCACCGCAACAAACCAAA 60.037 45.000 0.00 0.00 43.99 3.28
551 552 0.037326 TGCACCGCAACAAACCAAAA 60.037 45.000 0.00 0.00 34.76 2.44
552 553 0.649993 GCACCGCAACAAACCAAAAG 59.350 50.000 0.00 0.00 0.00 2.27
553 554 2.003196 CACCGCAACAAACCAAAAGT 57.997 45.000 0.00 0.00 0.00 2.66
554 555 2.342179 CACCGCAACAAACCAAAAGTT 58.658 42.857 0.00 0.00 41.81 2.66
555 556 2.093467 CACCGCAACAAACCAAAAGTTG 59.907 45.455 0.00 0.00 44.01 3.16
556 557 2.028930 ACCGCAACAAACCAAAAGTTGA 60.029 40.909 8.54 0.00 43.93 3.18
557 558 2.996621 CCGCAACAAACCAAAAGTTGAA 59.003 40.909 8.54 0.00 43.93 2.69
558 559 3.433615 CCGCAACAAACCAAAAGTTGAAA 59.566 39.130 8.54 0.00 43.93 2.69
559 560 4.094146 CCGCAACAAACCAAAAGTTGAAAT 59.906 37.500 8.54 0.00 43.93 2.17
560 561 5.020758 CGCAACAAACCAAAAGTTGAAATG 58.979 37.500 8.54 0.00 43.93 2.32
561 562 4.792702 GCAACAAACCAAAAGTTGAAATGC 59.207 37.500 8.54 0.00 43.93 3.56
562 563 5.331098 CAACAAACCAAAAGTTGAAATGCC 58.669 37.500 0.00 0.00 43.93 4.40
563 564 3.620821 ACAAACCAAAAGTTGAAATGCCG 59.379 39.130 0.00 0.00 39.19 5.69
564 565 1.864565 ACCAAAAGTTGAAATGCCGC 58.135 45.000 0.00 0.00 0.00 6.53
565 566 1.147473 CCAAAAGTTGAAATGCCGCC 58.853 50.000 0.00 0.00 0.00 6.13
566 567 1.539929 CCAAAAGTTGAAATGCCGCCA 60.540 47.619 0.00 0.00 0.00 5.69
567 568 2.208431 CAAAAGTTGAAATGCCGCCAA 58.792 42.857 0.00 0.00 0.00 4.52
568 569 2.611225 AAAGTTGAAATGCCGCCAAA 57.389 40.000 0.00 0.00 0.00 3.28
569 570 2.611225 AAGTTGAAATGCCGCCAAAA 57.389 40.000 0.00 0.00 0.00 2.44
570 571 1.864565 AGTTGAAATGCCGCCAAAAC 58.135 45.000 0.00 0.00 0.00 2.43
571 572 1.137872 AGTTGAAATGCCGCCAAAACA 59.862 42.857 0.00 0.00 0.00 2.83
572 573 1.260297 GTTGAAATGCCGCCAAAACAC 59.740 47.619 0.00 0.00 0.00 3.32
573 574 0.249657 TGAAATGCCGCCAAAACACC 60.250 50.000 0.00 0.00 0.00 4.16
574 575 0.249657 GAAATGCCGCCAAAACACCA 60.250 50.000 0.00 0.00 0.00 4.17
575 576 0.396060 AAATGCCGCCAAAACACCAT 59.604 45.000 0.00 0.00 0.00 3.55
576 577 1.261480 AATGCCGCCAAAACACCATA 58.739 45.000 0.00 0.00 0.00 2.74
577 578 1.484038 ATGCCGCCAAAACACCATAT 58.516 45.000 0.00 0.00 0.00 1.78
578 579 0.529833 TGCCGCCAAAACACCATATG 59.470 50.000 0.00 0.00 0.00 1.78
579 580 0.530288 GCCGCCAAAACACCATATGT 59.470 50.000 1.24 0.00 46.42 2.29
592 593 5.679734 CACCATATGTGCTTATTCACCTC 57.320 43.478 1.24 0.00 38.34 3.85
593 594 5.125356 CACCATATGTGCTTATTCACCTCA 58.875 41.667 1.24 0.00 38.34 3.86
594 595 5.766670 CACCATATGTGCTTATTCACCTCAT 59.233 40.000 1.24 0.00 38.34 2.90
595 596 6.000219 ACCATATGTGCTTATTCACCTCATC 59.000 40.000 1.24 0.00 36.17 2.92
596 597 5.999600 CCATATGTGCTTATTCACCTCATCA 59.000 40.000 1.24 0.00 36.17 3.07
597 598 6.148976 CCATATGTGCTTATTCACCTCATCAG 59.851 42.308 1.24 0.00 36.17 2.90
598 599 3.273434 TGTGCTTATTCACCTCATCAGC 58.727 45.455 0.00 0.00 36.17 4.26
602 603 4.162131 TGCTTATTCACCTCATCAGCTGTA 59.838 41.667 14.67 0.48 0.00 2.74
607 608 9.149225 CTTATTCACCTCATCAGCTGTATAATC 57.851 37.037 14.67 0.00 0.00 1.75
611 612 4.904251 ACCTCATCAGCTGTATAATCCTGT 59.096 41.667 14.67 0.00 0.00 4.00
616 617 4.635223 TCAGCTGTATAATCCTGTCATGC 58.365 43.478 14.67 0.00 0.00 4.06
646 647 6.237901 TGATTAGTTGTTGTTAGTGGCATCT 58.762 36.000 0.00 0.00 0.00 2.90
666 667 7.267857 GCATCTAACAATAATTTGGCCTCTTT 58.732 34.615 3.32 0.00 37.15 2.52
671 672 9.305925 CTAACAATAATTTGGCCTCTTTTGATC 57.694 33.333 3.32 0.00 37.15 2.92
683 687 5.335976 GCCTCTTTTGATCTCGGTTTTGATT 60.336 40.000 0.00 0.00 0.00 2.57
800 808 3.186047 CGTCCGTCCGCACATTCC 61.186 66.667 0.00 0.00 0.00 3.01
801 809 2.047655 GTCCGTCCGCACATTCCA 60.048 61.111 0.00 0.00 0.00 3.53
809 817 0.179009 CCGCACATTCCATCCATCCT 60.179 55.000 0.00 0.00 0.00 3.24
810 818 1.233019 CGCACATTCCATCCATCCTC 58.767 55.000 0.00 0.00 0.00 3.71
811 819 1.202734 CGCACATTCCATCCATCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
888 899 3.804193 GAGCTTGCCGCCTTTCCG 61.804 66.667 0.00 0.00 40.39 4.30
953 975 2.294791 TCGTGGTGCCACCTTTAATTTG 59.705 45.455 16.23 0.00 43.49 2.32
980 1002 4.483711 GCAAAGAGCGCCAATTCC 57.516 55.556 2.29 0.00 0.00 3.01
1262 1290 2.354729 CATCCGGGTCAAGGCCAA 59.645 61.111 5.01 0.00 0.00 4.52
1419 1447 3.195698 GCGTTCCTCGACATGGCC 61.196 66.667 0.00 0.00 42.86 5.36
1422 1450 4.467084 TTCCTCGACATGGCCGGC 62.467 66.667 21.18 21.18 0.00 6.13
1748 1789 1.017701 TGCTGATGAACGAGCTGCTG 61.018 55.000 7.01 1.88 36.01 4.41
1814 1855 3.050275 GTGCAGGTGAAGCGGGTC 61.050 66.667 0.00 0.00 33.85 4.46
1868 1909 2.031919 AAGAACGCCACCATCGCA 59.968 55.556 0.00 0.00 0.00 5.10
1970 2032 4.400109 CAACGCCAGCAGCAGCAG 62.400 66.667 3.17 0.00 45.49 4.24
2021 2095 2.505118 GACCTGCTGTCGTCGCTC 60.505 66.667 0.00 0.00 33.49 5.03
2054 2128 2.172483 CTTCCTCCTCCACCACCACG 62.172 65.000 0.00 0.00 0.00 4.94
2152 2229 3.632080 ACCACCACCGCAATCCGA 61.632 61.111 0.00 0.00 40.02 4.55
2154 2231 2.398554 CCACCACCGCAATCCGAAG 61.399 63.158 0.00 0.00 40.02 3.79
2157 2234 2.331893 CCACCGCAATCCGAAGCAA 61.332 57.895 0.00 0.00 40.02 3.91
2159 2236 0.171007 CACCGCAATCCGAAGCAAAT 59.829 50.000 0.00 0.00 40.02 2.32
2160 2237 0.171007 ACCGCAATCCGAAGCAAATG 59.829 50.000 0.00 0.00 40.02 2.32
2161 2238 1.141591 CCGCAATCCGAAGCAAATGC 61.142 55.000 0.00 0.00 40.02 3.56
2162 2239 0.456482 CGCAATCCGAAGCAAATGCA 60.456 50.000 8.28 0.00 41.02 3.96
2163 2240 1.274596 GCAATCCGAAGCAAATGCAG 58.725 50.000 8.28 0.00 45.16 4.41
2164 2241 1.274596 CAATCCGAAGCAAATGCAGC 58.725 50.000 8.28 0.00 45.16 5.25
2166 2243 0.454600 ATCCGAAGCAAATGCAGCAG 59.545 50.000 8.28 0.00 45.16 4.24
2168 2245 0.179171 CCGAAGCAAATGCAGCAGAG 60.179 55.000 8.28 0.00 45.16 3.35
2188 2277 2.864931 CTCTCGCGCGCCAAGAATC 61.865 63.158 27.95 0.00 0.00 2.52
2335 2429 2.737252 CCCCTTTTCGTCTTCTTCTTCG 59.263 50.000 0.00 0.00 0.00 3.79
2440 2557 9.891828 GATGTAAAATGTAATGTGTTCAGTTGA 57.108 29.630 0.00 0.00 0.00 3.18
2505 2622 2.294979 CATGTCCATGTCCATGTCCAG 58.705 52.381 11.70 0.00 37.11 3.86
2532 2649 0.818296 GACTGTCGGTACTGGATGCT 59.182 55.000 0.85 0.00 0.00 3.79
2563 2680 1.352352 AGTTGTTGATGAGTGGGGGAG 59.648 52.381 0.00 0.00 0.00 4.30
2564 2681 0.698238 TTGTTGATGAGTGGGGGAGG 59.302 55.000 0.00 0.00 0.00 4.30
2565 2682 0.178876 TGTTGATGAGTGGGGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2566 2683 0.253327 GTTGATGAGTGGGGGAGGAC 59.747 60.000 0.00 0.00 0.00 3.85
2567 2684 0.914417 TTGATGAGTGGGGGAGGACC 60.914 60.000 0.00 0.00 39.11 4.46
2568 2685 2.365635 ATGAGTGGGGGAGGACCG 60.366 66.667 0.00 0.00 41.60 4.79
2569 2686 4.715130 TGAGTGGGGGAGGACCGG 62.715 72.222 0.00 0.00 41.60 5.28
2597 2718 0.179161 GTCGGTCGATCACTGTGGAG 60.179 60.000 8.11 0.12 32.45 3.86
2636 2757 4.979943 TTTGCTGTTGTGAATTGTGAGA 57.020 36.364 0.00 0.00 0.00 3.27
2637 2758 4.556942 TTGCTGTTGTGAATTGTGAGAG 57.443 40.909 0.00 0.00 0.00 3.20
2672 2798 3.756117 ACACCTCCAAAGATCTGTTTCC 58.244 45.455 0.00 0.00 0.00 3.13
2767 2898 1.069049 GCTCCTCCTCATTCAGAGCTC 59.931 57.143 5.27 5.27 45.11 4.09
2796 2927 1.271656 GCATGAATAATGGAGGGCTGC 59.728 52.381 0.00 0.00 36.71 5.25
2797 2928 1.538512 CATGAATAATGGAGGGCTGCG 59.461 52.381 0.00 0.00 32.10 5.18
2802 2933 1.847798 TAATGGAGGGCTGCGGTTGT 61.848 55.000 0.00 0.00 0.00 3.32
2804 2935 3.365265 GGAGGGCTGCGGTTGTTG 61.365 66.667 0.00 0.00 0.00 3.33
2805 2936 3.365265 GAGGGCTGCGGTTGTTGG 61.365 66.667 0.00 0.00 0.00 3.77
2844 2975 3.895232 ATTCTCTATTGTCGTGCCACT 57.105 42.857 0.00 0.00 0.00 4.00
2897 3031 3.204831 TCCATTCCATCCATCCATCACAA 59.795 43.478 0.00 0.00 0.00 3.33
2900 3034 3.017048 TCCATCCATCCATCACAAACC 57.983 47.619 0.00 0.00 0.00 3.27
2906 3040 4.612401 TCCATCCATCACAAACCATTCAT 58.388 39.130 0.00 0.00 0.00 2.57
2908 3042 4.498513 CCATCCATCACAAACCATTCATCG 60.499 45.833 0.00 0.00 0.00 3.84
2911 3045 1.902938 TCACAAACCATTCATCGCCA 58.097 45.000 0.00 0.00 0.00 5.69
2912 3046 2.445427 TCACAAACCATTCATCGCCAT 58.555 42.857 0.00 0.00 0.00 4.40
2921 3056 2.892373 TTCATCGCCATTTTCGACAC 57.108 45.000 0.00 0.00 38.88 3.67
2928 3063 0.179166 CCATTTTCGACACGGGCATG 60.179 55.000 0.00 0.00 0.00 4.06
2935 3070 4.697756 ACACGGGCATGGTGTCGG 62.698 66.667 0.89 0.00 44.93 4.79
2936 3071 4.697756 CACGGGCATGGTGTCGGT 62.698 66.667 0.00 0.00 35.89 4.69
2937 3072 3.948719 ACGGGCATGGTGTCGGTT 61.949 61.111 0.00 0.00 31.26 4.44
2938 3073 2.671619 CGGGCATGGTGTCGGTTT 60.672 61.111 0.00 0.00 0.00 3.27
2939 3074 1.376166 CGGGCATGGTGTCGGTTTA 60.376 57.895 0.00 0.00 0.00 2.01
2940 3075 0.746563 CGGGCATGGTGTCGGTTTAT 60.747 55.000 0.00 0.00 0.00 1.40
2941 3076 1.473610 CGGGCATGGTGTCGGTTTATA 60.474 52.381 0.00 0.00 0.00 0.98
2942 3077 2.218603 GGGCATGGTGTCGGTTTATAG 58.781 52.381 0.00 0.00 0.00 1.31
2943 3078 2.218603 GGCATGGTGTCGGTTTATAGG 58.781 52.381 0.00 0.00 0.00 2.57
2944 3079 2.158871 GGCATGGTGTCGGTTTATAGGA 60.159 50.000 0.00 0.00 0.00 2.94
2945 3080 2.870411 GCATGGTGTCGGTTTATAGGAC 59.130 50.000 0.00 0.00 0.00 3.85
2946 3081 3.431766 GCATGGTGTCGGTTTATAGGACT 60.432 47.826 0.00 0.00 0.00 3.85
2947 3082 4.369182 CATGGTGTCGGTTTATAGGACTC 58.631 47.826 0.00 0.00 0.00 3.36
2948 3083 3.705051 TGGTGTCGGTTTATAGGACTCT 58.295 45.455 0.00 0.00 0.00 3.24
2949 3084 3.446161 TGGTGTCGGTTTATAGGACTCTG 59.554 47.826 0.00 0.00 0.00 3.35
2950 3085 3.181478 GGTGTCGGTTTATAGGACTCTGG 60.181 52.174 0.00 0.00 0.00 3.86
2951 3086 3.446516 GTGTCGGTTTATAGGACTCTGGT 59.553 47.826 0.00 0.00 0.00 4.00
2952 3087 3.446161 TGTCGGTTTATAGGACTCTGGTG 59.554 47.826 0.00 0.00 0.00 4.17
2953 3088 3.446516 GTCGGTTTATAGGACTCTGGTGT 59.553 47.826 0.00 0.00 0.00 4.16
2954 3089 4.081807 GTCGGTTTATAGGACTCTGGTGTT 60.082 45.833 0.00 0.00 0.00 3.32
2955 3090 4.529377 TCGGTTTATAGGACTCTGGTGTTT 59.471 41.667 0.00 0.00 0.00 2.83
2958 3093 6.348213 CGGTTTATAGGACTCTGGTGTTTTTG 60.348 42.308 0.00 0.00 0.00 2.44
2988 3123 7.743520 TTGTCGGTTTTGTTACATTTTCTTC 57.256 32.000 0.00 0.00 0.00 2.87
2989 3124 7.090953 TGTCGGTTTTGTTACATTTTCTTCT 57.909 32.000 0.00 0.00 0.00 2.85
2993 3128 6.140108 CGGTTTTGTTACATTTTCTTCTGTCG 59.860 38.462 0.00 0.00 0.00 4.35
2999 3134 6.202188 TGTTACATTTTCTTCTGTCGGACTTC 59.798 38.462 9.88 0.00 0.00 3.01
3000 3135 4.962155 ACATTTTCTTCTGTCGGACTTCT 58.038 39.130 9.88 0.00 0.00 2.85
3002 3137 3.386768 TTTCTTCTGTCGGACTTCTGG 57.613 47.619 9.88 0.00 0.00 3.86
3009 3144 1.226746 GTCGGACTTCTGGTGTTTGG 58.773 55.000 0.00 0.00 0.00 3.28
3016 3151 2.092646 ACTTCTGGTGTTTGGCTGTGTA 60.093 45.455 0.00 0.00 0.00 2.90
3020 3155 2.226330 TGGTGTTTGGCTGTGTACATC 58.774 47.619 0.00 0.00 0.00 3.06
3021 3156 1.539827 GGTGTTTGGCTGTGTACATCC 59.460 52.381 0.00 1.72 32.98 3.51
3024 3159 4.069304 GTGTTTGGCTGTGTACATCCTAA 58.931 43.478 0.00 1.98 33.51 2.69
3029 3164 8.268605 TGTTTGGCTGTGTACATCCTAATTATA 58.731 33.333 0.00 0.00 31.74 0.98
3031 3166 6.452242 TGGCTGTGTACATCCTAATTATACG 58.548 40.000 0.00 0.00 33.51 3.06
3032 3167 6.265876 TGGCTGTGTACATCCTAATTATACGA 59.734 38.462 0.00 0.00 33.51 3.43
3034 3169 7.654520 GGCTGTGTACATCCTAATTATACGAAA 59.345 37.037 0.00 0.00 0.00 3.46
3046 3181 2.014335 ATACGAAAGCCGGGTGTTAC 57.986 50.000 7.07 0.00 43.93 2.50
3054 3189 5.362105 AAAGCCGGGTGTTACTCATAATA 57.638 39.130 7.07 0.00 0.00 0.98
3059 3194 7.511268 AGCCGGGTGTTACTCATAATATTTTA 58.489 34.615 4.72 0.00 0.00 1.52
3087 3222 7.639039 TCCGCTTAATGCTACATTTTAAGATG 58.361 34.615 4.50 4.50 40.11 2.90
3097 3232 7.643764 TGCTACATTTTAAGATGATAAAAGCGC 59.356 33.333 12.62 0.00 37.95 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.962356 CGCAAGTTGGCCATCCTCTT 60.962 55.000 6.09 6.72 0.00 2.85
196 197 1.017177 GCCACCAATCGTTGACGCTA 61.017 55.000 0.00 0.00 39.60 4.26
292 293 1.003839 TCTGGCATTCCGCTCGTTT 60.004 52.632 0.00 0.00 41.91 3.60
444 445 4.944372 CCGACCGCCCATAGACGC 62.944 72.222 0.00 0.00 0.00 5.19
509 510 2.028125 TATGGAAGGAAGCTCGCCGG 62.028 60.000 0.00 0.00 0.00 6.13
510 511 0.598680 CTATGGAAGGAAGCTCGCCG 60.599 60.000 0.00 0.00 0.00 6.46
511 512 0.466124 ACTATGGAAGGAAGCTCGCC 59.534 55.000 0.00 0.00 0.00 5.54
512 513 2.317530 AACTATGGAAGGAAGCTCGC 57.682 50.000 0.00 0.00 0.00 5.03
513 514 2.352960 GCAAACTATGGAAGGAAGCTCG 59.647 50.000 0.00 0.00 0.00 5.03
514 515 3.127721 GTGCAAACTATGGAAGGAAGCTC 59.872 47.826 0.00 0.00 0.00 4.09
515 516 3.084786 GTGCAAACTATGGAAGGAAGCT 58.915 45.455 0.00 0.00 0.00 3.74
516 517 2.164422 GGTGCAAACTATGGAAGGAAGC 59.836 50.000 0.00 0.00 0.00 3.86
517 518 2.420022 CGGTGCAAACTATGGAAGGAAG 59.580 50.000 0.00 0.00 0.00 3.46
518 519 2.432444 CGGTGCAAACTATGGAAGGAA 58.568 47.619 0.00 0.00 0.00 3.36
519 520 1.948611 GCGGTGCAAACTATGGAAGGA 60.949 52.381 0.00 0.00 0.00 3.36
520 521 0.451783 GCGGTGCAAACTATGGAAGG 59.548 55.000 0.00 0.00 0.00 3.46
521 522 1.164411 TGCGGTGCAAACTATGGAAG 58.836 50.000 0.00 0.00 34.76 3.46
522 523 1.610363 TTGCGGTGCAAACTATGGAA 58.390 45.000 1.03 0.00 45.96 3.53
523 524 3.331002 TTGCGGTGCAAACTATGGA 57.669 47.368 1.03 0.00 45.96 3.41
531 532 0.037326 TTTGGTTTGTTGCGGTGCAA 60.037 45.000 0.00 0.00 46.80 4.08
532 533 0.037326 TTTTGGTTTGTTGCGGTGCA 60.037 45.000 0.00 0.00 36.47 4.57
533 534 0.649993 CTTTTGGTTTGTTGCGGTGC 59.350 50.000 0.00 0.00 0.00 5.01
534 535 2.003196 ACTTTTGGTTTGTTGCGGTG 57.997 45.000 0.00 0.00 0.00 4.94
535 536 2.028930 TCAACTTTTGGTTTGTTGCGGT 60.029 40.909 0.00 0.00 40.34 5.68
536 537 2.611518 TCAACTTTTGGTTTGTTGCGG 58.388 42.857 0.00 0.00 40.34 5.69
537 538 4.653806 TTTCAACTTTTGGTTTGTTGCG 57.346 36.364 0.00 0.00 40.34 4.85
538 539 4.792702 GCATTTCAACTTTTGGTTTGTTGC 59.207 37.500 0.00 0.00 40.34 4.17
539 540 5.331098 GGCATTTCAACTTTTGGTTTGTTG 58.669 37.500 0.00 0.00 41.46 3.33
540 541 4.094146 CGGCATTTCAACTTTTGGTTTGTT 59.906 37.500 0.00 0.00 35.74 2.83
541 542 3.620821 CGGCATTTCAACTTTTGGTTTGT 59.379 39.130 0.00 0.00 35.74 2.83
542 543 3.545822 GCGGCATTTCAACTTTTGGTTTG 60.546 43.478 0.00 0.00 35.74 2.93
543 544 2.611751 GCGGCATTTCAACTTTTGGTTT 59.388 40.909 0.00 0.00 35.74 3.27
544 545 2.209273 GCGGCATTTCAACTTTTGGTT 58.791 42.857 0.00 0.00 38.93 3.67
545 546 1.540146 GGCGGCATTTCAACTTTTGGT 60.540 47.619 3.07 0.00 0.00 3.67
546 547 1.147473 GGCGGCATTTCAACTTTTGG 58.853 50.000 3.07 0.00 0.00 3.28
547 548 1.863267 TGGCGGCATTTCAACTTTTG 58.137 45.000 7.97 0.00 0.00 2.44
548 549 2.611225 TTGGCGGCATTTCAACTTTT 57.389 40.000 14.32 0.00 0.00 2.27
549 550 2.611225 TTTGGCGGCATTTCAACTTT 57.389 40.000 14.32 0.00 0.00 2.66
550 551 2.209273 GTTTTGGCGGCATTTCAACTT 58.791 42.857 14.32 0.00 0.00 2.66
551 552 1.137872 TGTTTTGGCGGCATTTCAACT 59.862 42.857 14.32 0.00 0.00 3.16
552 553 1.260297 GTGTTTTGGCGGCATTTCAAC 59.740 47.619 14.32 13.83 0.00 3.18
553 554 1.576356 GTGTTTTGGCGGCATTTCAA 58.424 45.000 14.32 0.00 0.00 2.69
554 555 0.249657 GGTGTTTTGGCGGCATTTCA 60.250 50.000 14.32 9.40 0.00 2.69
555 556 0.249657 TGGTGTTTTGGCGGCATTTC 60.250 50.000 14.32 6.67 0.00 2.17
556 557 0.396060 ATGGTGTTTTGGCGGCATTT 59.604 45.000 14.32 0.00 0.00 2.32
557 558 1.261480 TATGGTGTTTTGGCGGCATT 58.739 45.000 14.32 0.00 0.00 3.56
558 559 1.136695 CATATGGTGTTTTGGCGGCAT 59.863 47.619 14.32 0.00 0.00 4.40
559 560 0.529833 CATATGGTGTTTTGGCGGCA 59.470 50.000 7.97 7.97 0.00 5.69
560 561 0.530288 ACATATGGTGTTTTGGCGGC 59.470 50.000 7.80 0.00 38.01 6.53
561 562 2.276472 CACATATGGTGTTTTGGCGG 57.724 50.000 7.80 0.00 42.75 6.13
571 572 5.372343 TGAGGTGAATAAGCACATATGGT 57.628 39.130 7.80 0.00 40.52 3.55
572 573 5.999600 TGATGAGGTGAATAAGCACATATGG 59.000 40.000 7.80 0.00 37.65 2.74
573 574 6.348295 GCTGATGAGGTGAATAAGCACATATG 60.348 42.308 0.00 0.00 37.65 1.78
574 575 5.704515 GCTGATGAGGTGAATAAGCACATAT 59.295 40.000 0.00 0.00 37.65 1.78
575 576 5.059161 GCTGATGAGGTGAATAAGCACATA 58.941 41.667 0.00 0.00 37.65 2.29
576 577 3.881688 GCTGATGAGGTGAATAAGCACAT 59.118 43.478 0.00 0.00 39.82 3.21
577 578 3.054875 AGCTGATGAGGTGAATAAGCACA 60.055 43.478 0.00 0.00 40.52 4.57
578 579 3.539604 AGCTGATGAGGTGAATAAGCAC 58.460 45.455 0.00 0.00 34.36 4.40
579 580 3.920231 AGCTGATGAGGTGAATAAGCA 57.080 42.857 0.00 0.00 34.36 3.91
588 589 4.904251 ACAGGATTATACAGCTGATGAGGT 59.096 41.667 23.35 0.00 0.00 3.85
589 590 5.011431 TGACAGGATTATACAGCTGATGAGG 59.989 44.000 23.35 3.01 0.00 3.86
590 591 6.094193 TGACAGGATTATACAGCTGATGAG 57.906 41.667 23.35 2.61 0.00 2.90
591 592 6.461640 CATGACAGGATTATACAGCTGATGA 58.538 40.000 23.35 6.89 0.00 2.92
592 593 5.121925 GCATGACAGGATTATACAGCTGATG 59.878 44.000 23.35 9.66 0.00 3.07
593 594 5.012871 AGCATGACAGGATTATACAGCTGAT 59.987 40.000 23.35 12.03 0.00 2.90
594 595 4.346127 AGCATGACAGGATTATACAGCTGA 59.654 41.667 23.35 4.31 0.00 4.26
595 596 4.451435 CAGCATGACAGGATTATACAGCTG 59.549 45.833 13.48 13.48 39.69 4.24
596 597 4.346127 TCAGCATGACAGGATTATACAGCT 59.654 41.667 0.00 0.00 42.56 4.24
597 598 4.635223 TCAGCATGACAGGATTATACAGC 58.365 43.478 0.00 0.00 42.56 4.40
616 617 7.538678 GCCACTAACAACAACTAATCAAATCAG 59.461 37.037 0.00 0.00 0.00 2.90
646 647 9.034800 AGATCAAAAGAGGCCAAATTATTGTTA 57.965 29.630 5.01 0.00 34.60 2.41
658 659 2.115343 AACCGAGATCAAAAGAGGCC 57.885 50.000 0.00 0.00 0.00 5.19
666 667 7.447374 AACACATAATCAAAACCGAGATCAA 57.553 32.000 0.00 0.00 0.00 2.57
671 672 4.088648 GCGAACACATAATCAAAACCGAG 58.911 43.478 0.00 0.00 0.00 4.63
794 802 4.725810 AGAAGAAGAGGATGGATGGAATGT 59.274 41.667 0.00 0.00 0.00 2.71
796 804 5.671276 AGAAGAAGAAGAGGATGGATGGAAT 59.329 40.000 0.00 0.00 0.00 3.01
798 806 4.629122 AGAAGAAGAAGAGGATGGATGGA 58.371 43.478 0.00 0.00 0.00 3.41
800 808 6.237887 AGAAGAAGAAGAAGAGGATGGATG 57.762 41.667 0.00 0.00 0.00 3.51
801 809 5.366477 GGAGAAGAAGAAGAAGAGGATGGAT 59.634 44.000 0.00 0.00 0.00 3.41
809 817 3.378742 CGGATCGGAGAAGAAGAAGAAGA 59.621 47.826 0.00 0.00 43.58 2.87
810 818 3.701241 CGGATCGGAGAAGAAGAAGAAG 58.299 50.000 0.00 0.00 43.58 2.85
811 819 2.159226 GCGGATCGGAGAAGAAGAAGAA 60.159 50.000 4.16 0.00 43.58 2.52
879 890 3.047877 AAAGCGACCGGAAAGGCG 61.048 61.111 9.46 4.68 46.52 5.52
882 893 1.574428 CACCAAAGCGACCGGAAAG 59.426 57.895 9.46 0.00 0.00 2.62
888 899 0.317854 GAAACAGCACCAAAGCGACC 60.318 55.000 0.00 0.00 40.15 4.79
1368 1396 1.298859 CCTTGCCCTTGTACAGCGTC 61.299 60.000 0.00 0.00 0.00 5.19
1422 1450 3.649277 CTTGGAGCGGTCCCTCACG 62.649 68.421 29.73 10.29 43.15 4.35
1748 1789 4.681978 ACCACCGCGTCCAGCTTC 62.682 66.667 4.92 0.00 45.59 3.86
1814 1855 3.696782 CGTCTCCACGTACTTCTGG 57.303 57.895 0.00 0.00 41.42 3.86
2036 2110 2.214216 CGTGGTGGTGGAGGAGGAA 61.214 63.158 0.00 0.00 0.00 3.36
2152 2229 1.590147 GCCTCTGCTGCATTTGCTT 59.410 52.632 1.31 0.00 42.66 3.91
2316 2406 4.049186 TGACGAAGAAGAAGACGAAAAGG 58.951 43.478 0.00 0.00 0.00 3.11
2335 2429 6.674694 AGCAGTATCAGACATTTTGATGAC 57.325 37.500 0.00 0.00 36.07 3.06
2440 2557 8.655935 ACTTATTTCCCAATCTCAACTCAATT 57.344 30.769 0.00 0.00 0.00 2.32
2441 2558 7.890127 TGACTTATTTCCCAATCTCAACTCAAT 59.110 33.333 0.00 0.00 0.00 2.57
2442 2559 7.230747 TGACTTATTTCCCAATCTCAACTCAA 58.769 34.615 0.00 0.00 0.00 3.02
2505 2622 0.739813 GTACCGACAGTCACCATGGC 60.740 60.000 13.04 0.00 0.00 4.40
2570 2687 3.753070 GATCGACCGACCGTCCAGC 62.753 68.421 0.00 0.00 38.36 4.85
2571 2688 2.404186 TGATCGACCGACCGTCCAG 61.404 63.158 0.00 0.00 38.36 3.86
2572 2689 2.360225 TGATCGACCGACCGTCCA 60.360 61.111 0.00 0.00 38.36 4.02
2573 2690 2.101770 GTGATCGACCGACCGTCC 59.898 66.667 0.00 0.00 38.36 4.79
2574 2691 1.226323 CAGTGATCGACCGACCGTC 60.226 63.158 0.00 0.00 38.21 4.79
2575 2692 1.970114 ACAGTGATCGACCGACCGT 60.970 57.895 0.00 0.00 0.00 4.83
2576 2693 1.514228 CACAGTGATCGACCGACCG 60.514 63.158 0.00 0.00 0.00 4.79
2577 2694 1.153823 CCACAGTGATCGACCGACC 60.154 63.158 0.62 0.00 0.00 4.79
2578 2695 0.179161 CTCCACAGTGATCGACCGAC 60.179 60.000 0.62 0.00 0.00 4.79
2579 2696 0.608308 ACTCCACAGTGATCGACCGA 60.608 55.000 0.62 0.00 0.00 4.69
2582 2699 3.390135 TGAAAACTCCACAGTGATCGAC 58.610 45.455 0.62 0.00 31.06 4.20
2628 2749 7.284034 GTGTTCCAATTATCATCCTCTCACAAT 59.716 37.037 0.00 0.00 0.00 2.71
2629 2750 6.599244 GTGTTCCAATTATCATCCTCTCACAA 59.401 38.462 0.00 0.00 0.00 3.33
2630 2751 6.115446 GTGTTCCAATTATCATCCTCTCACA 58.885 40.000 0.00 0.00 0.00 3.58
2631 2752 5.529060 GGTGTTCCAATTATCATCCTCTCAC 59.471 44.000 0.00 0.00 0.00 3.51
2632 2753 5.429762 AGGTGTTCCAATTATCATCCTCTCA 59.570 40.000 0.00 0.00 35.89 3.27
2633 2754 5.934781 AGGTGTTCCAATTATCATCCTCTC 58.065 41.667 0.00 0.00 35.89 3.20
2634 2755 5.163152 GGAGGTGTTCCAATTATCATCCTCT 60.163 44.000 0.00 0.00 46.01 3.69
2635 2756 5.066593 GGAGGTGTTCCAATTATCATCCTC 58.933 45.833 0.00 0.00 46.01 3.71
2636 2757 5.053978 GGAGGTGTTCCAATTATCATCCT 57.946 43.478 0.00 0.00 46.01 3.24
2767 2898 5.385509 TCCATTATTCATGCATGCAGATG 57.614 39.130 26.69 19.91 0.00 2.90
2773 2904 3.056821 CAGCCCTCCATTATTCATGCATG 60.057 47.826 21.07 21.07 0.00 4.06
2844 2975 1.293498 GCGAGGGAGTGAGCTGAAA 59.707 57.895 0.00 0.00 0.00 2.69
2897 3031 2.752354 TCGAAAATGGCGATGAATGGTT 59.248 40.909 0.00 0.00 32.09 3.67
2900 3034 3.100817 GTGTCGAAAATGGCGATGAATG 58.899 45.455 0.00 0.00 40.19 2.67
2906 3040 2.030401 CCCGTGTCGAAAATGGCGA 61.030 57.895 2.63 0.00 35.08 5.54
2908 3042 1.933115 ATGCCCGTGTCGAAAATGGC 61.933 55.000 9.25 9.25 39.33 4.40
2911 3045 0.608035 ACCATGCCCGTGTCGAAAAT 60.608 50.000 0.00 0.00 0.00 1.82
2912 3046 1.228003 ACCATGCCCGTGTCGAAAA 60.228 52.632 0.00 0.00 0.00 2.29
2921 3056 0.746563 ATAAACCGACACCATGCCCG 60.747 55.000 0.00 0.00 0.00 6.13
2928 3063 3.181478 CCAGAGTCCTATAAACCGACACC 60.181 52.174 0.00 0.00 0.00 4.16
2934 3069 6.569801 GCAAAAACACCAGAGTCCTATAAACC 60.570 42.308 0.00 0.00 0.00 3.27
2935 3070 6.379386 GCAAAAACACCAGAGTCCTATAAAC 58.621 40.000 0.00 0.00 0.00 2.01
2936 3071 5.475564 GGCAAAAACACCAGAGTCCTATAAA 59.524 40.000 0.00 0.00 0.00 1.40
2937 3072 5.007682 GGCAAAAACACCAGAGTCCTATAA 58.992 41.667 0.00 0.00 0.00 0.98
2938 3073 4.585879 GGCAAAAACACCAGAGTCCTATA 58.414 43.478 0.00 0.00 0.00 1.31
2939 3074 3.421844 GGCAAAAACACCAGAGTCCTAT 58.578 45.455 0.00 0.00 0.00 2.57
2940 3075 2.808933 CGGCAAAAACACCAGAGTCCTA 60.809 50.000 0.00 0.00 0.00 2.94
2941 3076 1.692411 GGCAAAAACACCAGAGTCCT 58.308 50.000 0.00 0.00 0.00 3.85
2942 3077 0.310854 CGGCAAAAACACCAGAGTCC 59.689 55.000 0.00 0.00 0.00 3.85
2943 3078 1.305201 TCGGCAAAAACACCAGAGTC 58.695 50.000 0.00 0.00 0.00 3.36
2944 3079 1.981256 ATCGGCAAAAACACCAGAGT 58.019 45.000 0.00 0.00 0.00 3.24
2945 3080 3.052036 CAAATCGGCAAAAACACCAGAG 58.948 45.455 0.00 0.00 0.00 3.35
2946 3081 2.428890 ACAAATCGGCAAAAACACCAGA 59.571 40.909 0.00 0.00 0.00 3.86
2947 3082 2.794350 GACAAATCGGCAAAAACACCAG 59.206 45.455 0.00 0.00 0.00 4.00
2948 3083 2.796383 CGACAAATCGGCAAAAACACCA 60.796 45.455 0.00 0.00 44.99 4.17
2949 3084 1.784283 CGACAAATCGGCAAAAACACC 59.216 47.619 0.00 0.00 44.99 4.16
2975 3110 6.424207 AGAAGTCCGACAGAAGAAAATGTAAC 59.576 38.462 0.40 0.00 0.00 2.50
2976 3111 6.423905 CAGAAGTCCGACAGAAGAAAATGTAA 59.576 38.462 0.40 0.00 0.00 2.41
2988 3123 1.867233 CAAACACCAGAAGTCCGACAG 59.133 52.381 0.40 0.00 0.00 3.51
2989 3124 1.474320 CCAAACACCAGAAGTCCGACA 60.474 52.381 0.40 0.00 0.00 4.35
2993 3128 0.954452 CAGCCAAACACCAGAAGTCC 59.046 55.000 0.00 0.00 0.00 3.85
2999 3134 1.674359 TGTACACAGCCAAACACCAG 58.326 50.000 0.00 0.00 0.00 4.00
3000 3135 2.226330 GATGTACACAGCCAAACACCA 58.774 47.619 0.00 0.00 0.00 4.17
3009 3144 8.583810 TTTCGTATAATTAGGATGTACACAGC 57.416 34.615 0.00 0.00 0.00 4.40
3016 3151 5.235516 CCGGCTTTCGTATAATTAGGATGT 58.764 41.667 0.00 0.00 37.11 3.06
3020 3155 3.744426 CACCCGGCTTTCGTATAATTAGG 59.256 47.826 0.00 0.00 37.11 2.69
3021 3156 4.374399 ACACCCGGCTTTCGTATAATTAG 58.626 43.478 0.00 0.00 37.11 1.73
3024 3159 2.994186 ACACCCGGCTTTCGTATAAT 57.006 45.000 0.00 0.00 37.11 1.28
3029 3164 0.320160 GAGTAACACCCGGCTTTCGT 60.320 55.000 0.00 0.00 37.11 3.85
3031 3166 2.109425 ATGAGTAACACCCGGCTTTC 57.891 50.000 0.00 0.00 0.00 2.62
3032 3167 3.706600 TTATGAGTAACACCCGGCTTT 57.293 42.857 0.00 0.00 0.00 3.51
3034 3169 5.562298 AATATTATGAGTAACACCCGGCT 57.438 39.130 0.00 0.00 0.00 5.52
3070 3205 9.669353 CGCTTTTATCATCTTAAAATGTAGCAT 57.331 29.630 0.00 0.00 32.28 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.