Multiple sequence alignment - TraesCS7A01G055000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G055000 chr7A 100.000 4538 0 0 1 4538 26451923 26447386 0.000000e+00 8381.0
1 TraesCS7A01G055000 chr7A 94.163 257 14 1 1 257 53858698 53858443 1.530000e-104 390.0
2 TraesCS7A01G055000 chr7A 93.487 261 16 1 1 261 629775773 629776032 1.980000e-103 387.0
3 TraesCS7A01G055000 chr7A 95.890 219 7 2 4322 4538 46971271 46971489 2.010000e-93 353.0
4 TraesCS7A01G055000 chr7A 96.635 208 7 0 4331 4538 459180445 459180652 3.360000e-91 346.0
5 TraesCS7A01G055000 chr7A 91.124 169 11 3 305 469 158656440 158656272 4.570000e-55 226.0
6 TraesCS7A01G055000 chr4A 94.910 3831 118 33 555 4331 709979930 709976123 0.000000e+00 5923.0
7 TraesCS7A01G055000 chr4A 77.692 780 156 14 2620 3390 900763 901533 1.150000e-125 460.0
8 TraesCS7A01G055000 chr4A 95.038 262 13 0 1 262 683792291 683792552 3.270000e-111 412.0
9 TraesCS7A01G055000 chr4A 87.611 226 25 3 4106 4331 709975939 709975717 4.500000e-65 259.0
10 TraesCS7A01G055000 chr7D 97.295 3401 61 10 555 3931 25525083 25521690 0.000000e+00 5742.0
11 TraesCS7A01G055000 chr7D 89.974 389 31 5 3947 4331 25517298 25516914 3.150000e-136 496.0
12 TraesCS7A01G055000 chr7D 92.000 275 21 1 1 274 182809456 182809730 7.120000e-103 385.0
13 TraesCS7A01G055000 chr7D 88.444 225 24 2 4107 4331 25516730 25516508 2.080000e-68 270.0
14 TraesCS7A01G055000 chr7D 91.667 168 10 3 307 470 576654267 576654100 3.530000e-56 230.0
15 TraesCS7A01G055000 chr3A 78.599 785 146 15 2620 3393 186041028 186040255 2.440000e-137 499.0
16 TraesCS7A01G055000 chr3A 96.172 209 7 1 4330 4538 746141382 746141589 1.560000e-89 340.0
17 TraesCS7A01G055000 chr5B 78.205 780 148 19 2620 3391 515185775 515186540 3.180000e-131 479.0
18 TraesCS7A01G055000 chr5B 94.660 206 11 0 4333 4538 547827289 547827084 2.040000e-83 320.0
19 TraesCS7A01G055000 chr5D 77.692 780 152 19 2620 3391 425840604 425841369 1.490000e-124 457.0
20 TraesCS7A01G055000 chr5D 95.169 207 10 0 4332 4538 316648224 316648430 1.220000e-85 327.0
21 TraesCS7A01G055000 chr5D 91.124 169 13 1 305 471 382343801 382343969 1.270000e-55 228.0
22 TraesCS7A01G055000 chr5D 90.698 172 13 3 304 472 104489955 104489784 4.570000e-55 226.0
23 TraesCS7A01G055000 chr5A 77.635 778 156 16 2620 3391 540053662 540054427 1.490000e-124 457.0
24 TraesCS7A01G055000 chr5A 94.595 259 14 0 1 259 509104807 509105065 7.070000e-108 401.0
25 TraesCS7A01G055000 chr5A 94.253 261 15 0 1 261 392031248 392030988 2.540000e-107 399.0
26 TraesCS7A01G055000 chr5A 94.253 261 15 0 1 261 392033240 392032980 2.540000e-107 399.0
27 TraesCS7A01G055000 chr5A 93.491 169 8 3 304 469 382961780 382961948 9.750000e-62 248.0
28 TraesCS7A01G055000 chr5A 81.787 291 43 8 2669 2954 678083107 678082822 7.590000e-58 235.0
29 TraesCS7A01G055000 chr5A 76.744 430 86 13 2969 3391 678082780 678082358 1.270000e-55 228.0
30 TraesCS7A01G055000 chr6D 93.774 257 16 0 1 257 470979104 470979360 1.980000e-103 387.0
31 TraesCS7A01G055000 chr6D 94.737 209 11 0 4330 4538 364062656 364062864 4.380000e-85 326.0
32 TraesCS7A01G055000 chr2B 93.774 257 16 0 1 257 90783555 90783299 1.980000e-103 387.0
33 TraesCS7A01G055000 chr2B 93.981 216 11 2 4324 4538 227293544 227293758 4.380000e-85 326.0
34 TraesCS7A01G055000 chr1A 96.714 213 6 1 4327 4538 158812226 158812014 2.010000e-93 353.0
35 TraesCS7A01G055000 chr1A 75.701 214 42 9 2921 3129 549712274 549712482 1.040000e-16 99.0
36 TraesCS7A01G055000 chr6A 87.542 297 15 8 1 285 922140 922426 1.570000e-84 324.0
37 TraesCS7A01G055000 chr6A 90.805 174 11 2 303 471 64662249 64662422 1.270000e-55 228.0
38 TraesCS7A01G055000 chr2D 94.634 205 10 1 4334 4538 470060369 470060166 2.630000e-82 316.0
39 TraesCS7A01G055000 chr4D 82.653 294 35 13 2669 2954 497666784 497667069 3.510000e-61 246.0
40 TraesCS7A01G055000 chr4D 77.513 378 69 16 3022 3391 497667164 497667533 3.560000e-51 213.0
41 TraesCS7A01G055000 chr2A 91.429 175 11 2 302 472 59331097 59330923 2.110000e-58 237.0
42 TraesCS7A01G055000 chr2A 91.228 171 11 3 305 471 715471560 715471730 3.530000e-56 230.0
43 TraesCS7A01G055000 chr1B 91.176 170 10 3 306 471 569523851 569524019 4.570000e-55 226.0
44 TraesCS7A01G055000 chr4B 79.795 292 41 12 2669 2954 638987647 638987926 3.580000e-46 196.0
45 TraesCS7A01G055000 chr1D 75.225 222 43 10 2921 3136 457074231 457074446 1.340000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G055000 chr7A 26447386 26451923 4537 True 8381.0 8381 100.0000 1 4538 1 chr7A.!!$R1 4537
1 TraesCS7A01G055000 chr4A 709975717 709979930 4213 True 3091.0 5923 91.2605 555 4331 2 chr4A.!!$R1 3776
2 TraesCS7A01G055000 chr4A 900763 901533 770 False 460.0 460 77.6920 2620 3390 1 chr4A.!!$F1 770
3 TraesCS7A01G055000 chr7D 25521690 25525083 3393 True 5742.0 5742 97.2950 555 3931 1 chr7D.!!$R1 3376
4 TraesCS7A01G055000 chr7D 25516508 25517298 790 True 383.0 496 89.2090 3947 4331 2 chr7D.!!$R3 384
5 TraesCS7A01G055000 chr3A 186040255 186041028 773 True 499.0 499 78.5990 2620 3393 1 chr3A.!!$R1 773
6 TraesCS7A01G055000 chr5B 515185775 515186540 765 False 479.0 479 78.2050 2620 3391 1 chr5B.!!$F1 771
7 TraesCS7A01G055000 chr5D 425840604 425841369 765 False 457.0 457 77.6920 2620 3391 1 chr5D.!!$F3 771
8 TraesCS7A01G055000 chr5A 540053662 540054427 765 False 457.0 457 77.6350 2620 3391 1 chr5A.!!$F3 771
9 TraesCS7A01G055000 chr5A 392030988 392033240 2252 True 399.0 399 94.2530 1 261 2 chr5A.!!$R1 260
10 TraesCS7A01G055000 chr5A 678082358 678083107 749 True 231.5 235 79.2655 2669 3391 2 chr5A.!!$R2 722
11 TraesCS7A01G055000 chr4D 497666784 497667533 749 False 229.5 246 80.0830 2669 3391 2 chr4D.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 525 0.234106 CCTGCAACATCGATCGCATC 59.766 55.0 11.09 0.0 33.15 3.91 F
552 553 0.250234 TCTCTTCTCCCATTGGCGTG 59.750 55.0 0.00 0.0 0.00 5.34 F
2442 2461 0.035458 AGTCCTTCTCCAACGGCAAG 59.965 55.0 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2128 0.461163 TGATAATGTGGCCGTCGGTG 60.461 55.000 13.94 0.0 0.0 4.94 R
2444 2463 1.448013 GTGTAGCCGCTCTTGGACC 60.448 63.158 0.00 0.0 0.0 4.46 R
3898 4546 0.652592 CGAGCTCTTTGTTATGCGGG 59.347 55.000 12.85 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.832187 CCTATAAGTCCCATCTAAACCAAACAA 59.168 37.037 0.00 0.00 0.00 2.83
88 89 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
93 94 4.668138 AGGGACTTAAAGTGGGCATTTA 57.332 40.909 0.00 0.00 27.25 1.40
94 95 4.600062 AGGGACTTAAAGTGGGCATTTAG 58.400 43.478 0.00 0.00 27.25 1.85
109 110 8.691797 GTGGGCATTTAGGACTTATGAAATAAA 58.308 33.333 0.00 0.00 38.53 1.40
112 113 9.529325 GGCATTTAGGACTTATGAAATAAAACC 57.471 33.333 0.00 0.00 38.53 3.27
178 179 6.715264 ACTTATAAGTCCCAGAAACCAAACAG 59.285 38.462 12.50 0.00 32.86 3.16
179 180 3.662759 AAGTCCCAGAAACCAAACAGA 57.337 42.857 0.00 0.00 0.00 3.41
201 202 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
214 215 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
251 252 7.365840 GTCCTAAGACTTATGAACCAAACAG 57.634 40.000 2.20 0.00 40.10 3.16
257 258 2.990740 TATGAACCAAACAGGGCCTT 57.009 45.000 1.32 0.00 43.89 4.35
261 262 2.712087 TGAACCAAACAGGGCCTTAGTA 59.288 45.455 1.32 0.00 43.89 1.82
262 263 3.332485 TGAACCAAACAGGGCCTTAGTAT 59.668 43.478 1.32 0.00 43.89 2.12
263 264 3.366052 ACCAAACAGGGCCTTAGTATG 57.634 47.619 1.32 0.00 43.89 2.39
264 265 2.916934 ACCAAACAGGGCCTTAGTATGA 59.083 45.455 1.32 0.00 43.89 2.15
265 266 3.332485 ACCAAACAGGGCCTTAGTATGAA 59.668 43.478 1.32 0.00 43.89 2.57
266 267 4.017499 ACCAAACAGGGCCTTAGTATGAAT 60.017 41.667 1.32 0.00 43.89 2.57
267 268 4.956075 CCAAACAGGGCCTTAGTATGAATT 59.044 41.667 1.32 0.00 0.00 2.17
268 269 5.163519 CCAAACAGGGCCTTAGTATGAATTG 60.164 44.000 1.32 0.84 0.00 2.32
269 270 3.555966 ACAGGGCCTTAGTATGAATTGC 58.444 45.455 1.32 0.00 0.00 3.56
270 271 3.203040 ACAGGGCCTTAGTATGAATTGCT 59.797 43.478 1.32 0.00 0.00 3.91
271 272 3.567164 CAGGGCCTTAGTATGAATTGCTG 59.433 47.826 1.32 0.00 0.00 4.41
272 273 2.887152 GGGCCTTAGTATGAATTGCTGG 59.113 50.000 0.84 0.00 0.00 4.85
274 275 3.954258 GGCCTTAGTATGAATTGCTGGTT 59.046 43.478 0.00 0.00 0.00 3.67
275 276 4.402474 GGCCTTAGTATGAATTGCTGGTTT 59.598 41.667 0.00 0.00 0.00 3.27
277 278 5.125417 GCCTTAGTATGAATTGCTGGTTTCA 59.875 40.000 0.00 0.00 36.38 2.69
278 279 6.555315 CCTTAGTATGAATTGCTGGTTTCAC 58.445 40.000 0.00 0.00 34.87 3.18
279 280 6.150976 CCTTAGTATGAATTGCTGGTTTCACA 59.849 38.462 0.00 0.00 34.87 3.58
280 281 7.309133 CCTTAGTATGAATTGCTGGTTTCACAA 60.309 37.037 0.00 0.00 34.87 3.33
282 283 6.392354 AGTATGAATTGCTGGTTTCACAATG 58.608 36.000 0.00 0.00 34.87 2.82
283 284 3.992643 TGAATTGCTGGTTTCACAATGG 58.007 40.909 0.00 0.00 34.38 3.16
284 285 3.244146 TGAATTGCTGGTTTCACAATGGG 60.244 43.478 0.00 0.00 34.38 4.00
285 286 0.392336 TTGCTGGTTTCACAATGGGC 59.608 50.000 0.00 0.00 0.00 5.36
286 287 1.080569 GCTGGTTTCACAATGGGCG 60.081 57.895 0.00 0.00 0.00 6.13
289 290 0.887247 TGGTTTCACAATGGGCGATG 59.113 50.000 0.00 0.00 0.00 3.84
291 292 1.543802 GGTTTCACAATGGGCGATGAA 59.456 47.619 0.00 0.00 0.00 2.57
292 293 2.029470 GGTTTCACAATGGGCGATGAAA 60.029 45.455 0.00 0.00 38.42 2.69
293 294 3.244976 GTTTCACAATGGGCGATGAAAG 58.755 45.455 0.00 0.00 40.67 2.62
294 295 2.488204 TCACAATGGGCGATGAAAGA 57.512 45.000 0.00 0.00 0.00 2.52
295 296 3.003394 TCACAATGGGCGATGAAAGAT 57.997 42.857 0.00 0.00 0.00 2.40
296 297 4.149511 TCACAATGGGCGATGAAAGATA 57.850 40.909 0.00 0.00 0.00 1.98
297 298 4.522114 TCACAATGGGCGATGAAAGATAA 58.478 39.130 0.00 0.00 0.00 1.75
298 299 4.335315 TCACAATGGGCGATGAAAGATAAC 59.665 41.667 0.00 0.00 0.00 1.89
299 300 3.632145 ACAATGGGCGATGAAAGATAACC 59.368 43.478 0.00 0.00 0.00 2.85
300 301 3.864789 ATGGGCGATGAAAGATAACCT 57.135 42.857 0.00 0.00 0.00 3.50
301 302 3.194005 TGGGCGATGAAAGATAACCTC 57.806 47.619 0.00 0.00 0.00 3.85
302 303 2.503765 TGGGCGATGAAAGATAACCTCA 59.496 45.455 0.00 0.00 0.00 3.86
303 304 3.054728 TGGGCGATGAAAGATAACCTCAA 60.055 43.478 0.00 0.00 0.00 3.02
304 305 3.945285 GGGCGATGAAAGATAACCTCAAA 59.055 43.478 0.00 0.00 0.00 2.69
305 306 4.201920 GGGCGATGAAAGATAACCTCAAAC 60.202 45.833 0.00 0.00 0.00 2.93
306 307 4.394920 GGCGATGAAAGATAACCTCAAACA 59.605 41.667 0.00 0.00 0.00 2.83
307 308 5.447818 GGCGATGAAAGATAACCTCAAACAG 60.448 44.000 0.00 0.00 0.00 3.16
308 309 5.122396 GCGATGAAAGATAACCTCAAACAGT 59.878 40.000 0.00 0.00 0.00 3.55
309 310 6.348540 GCGATGAAAGATAACCTCAAACAGTT 60.349 38.462 0.00 0.00 0.00 3.16
310 311 7.584987 CGATGAAAGATAACCTCAAACAGTTT 58.415 34.615 0.00 0.00 0.00 2.66
311 312 8.076178 CGATGAAAGATAACCTCAAACAGTTTT 58.924 33.333 0.00 0.00 0.00 2.43
312 313 9.185192 GATGAAAGATAACCTCAAACAGTTTTG 57.815 33.333 0.00 0.00 43.17 2.44
313 314 6.978080 TGAAAGATAACCTCAAACAGTTTTGC 59.022 34.615 0.00 0.00 41.78 3.68
314 315 6.715347 AAGATAACCTCAAACAGTTTTGCT 57.285 33.333 0.00 0.00 41.78 3.91
315 316 7.817418 AAGATAACCTCAAACAGTTTTGCTA 57.183 32.000 0.00 0.00 41.78 3.49
316 317 7.817418 AGATAACCTCAAACAGTTTTGCTAA 57.183 32.000 0.00 0.00 41.78 3.09
317 318 8.232913 AGATAACCTCAAACAGTTTTGCTAAA 57.767 30.769 0.00 0.00 41.78 1.85
318 319 8.352942 AGATAACCTCAAACAGTTTTGCTAAAG 58.647 33.333 0.00 0.00 41.78 1.85
319 320 4.682787 ACCTCAAACAGTTTTGCTAAAGC 58.317 39.130 0.00 0.00 41.78 3.51
345 346 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
346 347 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
354 355 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
355 356 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
356 357 6.828273 TGCCATAAGTATTGCACATCTAAGTT 59.172 34.615 0.00 0.00 30.49 2.66
357 358 7.012327 TGCCATAAGTATTGCACATCTAAGTTC 59.988 37.037 0.00 0.00 30.49 3.01
358 359 7.227512 GCCATAAGTATTGCACATCTAAGTTCT 59.772 37.037 0.00 0.00 0.00 3.01
359 360 9.764363 CCATAAGTATTGCACATCTAAGTTCTA 57.236 33.333 0.00 0.00 0.00 2.10
363 364 8.879342 AGTATTGCACATCTAAGTTCTATGTC 57.121 34.615 0.00 0.00 31.60 3.06
364 365 8.478066 AGTATTGCACATCTAAGTTCTATGTCA 58.522 33.333 0.00 1.51 31.60 3.58
365 366 9.265901 GTATTGCACATCTAAGTTCTATGTCAT 57.734 33.333 0.00 0.00 31.60 3.06
366 367 8.743085 ATTGCACATCTAAGTTCTATGTCATT 57.257 30.769 0.00 0.00 31.60 2.57
367 368 7.543947 TGCACATCTAAGTTCTATGTCATTG 57.456 36.000 0.00 0.00 31.60 2.82
368 369 7.330262 TGCACATCTAAGTTCTATGTCATTGA 58.670 34.615 0.00 0.00 31.60 2.57
369 370 7.989170 TGCACATCTAAGTTCTATGTCATTGAT 59.011 33.333 0.00 0.00 31.60 2.57
370 371 8.834465 GCACATCTAAGTTCTATGTCATTGATT 58.166 33.333 0.00 0.00 31.60 2.57
375 376 9.230122 TCTAAGTTCTATGTCATTGATTTTGCA 57.770 29.630 0.00 0.00 0.00 4.08
377 378 8.922058 AAGTTCTATGTCATTGATTTTGCATC 57.078 30.769 0.00 0.00 0.00 3.91
378 379 7.191551 AGTTCTATGTCATTGATTTTGCATCG 58.808 34.615 0.00 0.00 0.00 3.84
379 380 6.923928 TCTATGTCATTGATTTTGCATCGA 57.076 33.333 0.00 0.00 0.00 3.59
380 381 6.951643 TCTATGTCATTGATTTTGCATCGAG 58.048 36.000 0.00 0.00 0.00 4.04
381 382 5.823209 ATGTCATTGATTTTGCATCGAGA 57.177 34.783 0.00 0.00 0.00 4.04
382 383 5.823209 TGTCATTGATTTTGCATCGAGAT 57.177 34.783 0.00 0.00 0.00 2.75
383 384 6.198650 TGTCATTGATTTTGCATCGAGATT 57.801 33.333 0.00 0.00 0.00 2.40
384 385 6.623486 TGTCATTGATTTTGCATCGAGATTT 58.377 32.000 0.00 0.00 0.00 2.17
385 386 6.528774 TGTCATTGATTTTGCATCGAGATTTG 59.471 34.615 0.00 0.00 0.00 2.32
386 387 6.529125 GTCATTGATTTTGCATCGAGATTTGT 59.471 34.615 0.00 0.00 0.00 2.83
387 388 6.528774 TCATTGATTTTGCATCGAGATTTGTG 59.471 34.615 0.00 0.00 0.00 3.33
388 389 5.375417 TGATTTTGCATCGAGATTTGTGT 57.625 34.783 0.00 0.00 0.00 3.72
389 390 5.155643 TGATTTTGCATCGAGATTTGTGTG 58.844 37.500 0.00 0.00 0.00 3.82
390 391 4.827304 TTTTGCATCGAGATTTGTGTGA 57.173 36.364 0.00 0.00 0.00 3.58
391 392 4.827304 TTTGCATCGAGATTTGTGTGAA 57.173 36.364 0.00 0.00 0.00 3.18
392 393 5.375417 TTTGCATCGAGATTTGTGTGAAT 57.625 34.783 0.00 0.00 0.00 2.57
393 394 6.493449 TTTGCATCGAGATTTGTGTGAATA 57.507 33.333 0.00 0.00 0.00 1.75
394 395 6.682423 TTGCATCGAGATTTGTGTGAATAT 57.318 33.333 0.00 0.00 0.00 1.28
395 396 6.682423 TGCATCGAGATTTGTGTGAATATT 57.318 33.333 0.00 0.00 0.00 1.28
396 397 7.087409 TGCATCGAGATTTGTGTGAATATTT 57.913 32.000 0.00 0.00 0.00 1.40
397 398 7.537715 TGCATCGAGATTTGTGTGAATATTTT 58.462 30.769 0.00 0.00 0.00 1.82
398 399 8.028354 TGCATCGAGATTTGTGTGAATATTTTT 58.972 29.630 0.00 0.00 0.00 1.94
421 422 5.581126 TTTTTGTGCTTGATTCACTCACT 57.419 34.783 14.71 0.00 35.58 3.41
422 423 5.581126 TTTTGTGCTTGATTCACTCACTT 57.419 34.783 14.71 0.00 35.58 3.16
423 424 6.691754 TTTTGTGCTTGATTCACTCACTTA 57.308 33.333 14.71 4.85 35.58 2.24
424 425 5.929697 TTGTGCTTGATTCACTCACTTAG 57.070 39.130 14.71 0.00 35.58 2.18
425 426 5.213891 TGTGCTTGATTCACTCACTTAGA 57.786 39.130 14.71 0.00 35.58 2.10
426 427 5.798132 TGTGCTTGATTCACTCACTTAGAT 58.202 37.500 14.71 0.00 35.58 1.98
427 428 5.640783 TGTGCTTGATTCACTCACTTAGATG 59.359 40.000 14.71 0.00 35.58 2.90
428 429 5.641209 GTGCTTGATTCACTCACTTAGATGT 59.359 40.000 9.16 0.00 32.17 3.06
429 430 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
430 431 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
431 432 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
432 433 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
433 434 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
434 435 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
435 436 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
436 437 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
437 438 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
438 439 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
439 440 8.311109 TCACTCACTTAGATGTGCAATAACTAA 58.689 33.333 0.00 0.00 37.81 2.24
440 441 8.935844 CACTCACTTAGATGTGCAATAACTAAA 58.064 33.333 0.00 0.00 37.81 1.85
441 442 9.155975 ACTCACTTAGATGTGCAATAACTAAAG 57.844 33.333 0.00 0.00 37.81 1.85
442 443 7.974675 TCACTTAGATGTGCAATAACTAAAGC 58.025 34.615 0.00 0.00 37.81 3.51
443 444 7.606073 TCACTTAGATGTGCAATAACTAAAGCA 59.394 33.333 0.00 0.00 37.81 3.91
453 454 8.146479 TGCAATAACTAAAGCACATCTAGATG 57.854 34.615 27.63 27.63 44.15 2.90
465 466 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
469 470 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
470 471 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
471 472 1.057275 TGTGCCCTAGACACACCCAA 61.057 55.000 12.81 0.00 42.88 4.12
472 473 0.605589 GTGCCCTAGACACACCCAAC 60.606 60.000 10.07 0.00 37.96 3.77
473 474 1.002502 GCCCTAGACACACCCAACC 60.003 63.158 0.00 0.00 0.00 3.77
474 475 1.489560 GCCCTAGACACACCCAACCT 61.490 60.000 0.00 0.00 0.00 3.50
475 476 0.613777 CCCTAGACACACCCAACCTC 59.386 60.000 0.00 0.00 0.00 3.85
476 477 1.348064 CCTAGACACACCCAACCTCA 58.652 55.000 0.00 0.00 0.00 3.86
477 478 1.697432 CCTAGACACACCCAACCTCAA 59.303 52.381 0.00 0.00 0.00 3.02
478 479 2.105821 CCTAGACACACCCAACCTCAAA 59.894 50.000 0.00 0.00 0.00 2.69
479 480 2.818751 AGACACACCCAACCTCAAAA 57.181 45.000 0.00 0.00 0.00 2.44
480 481 2.375146 AGACACACCCAACCTCAAAAC 58.625 47.619 0.00 0.00 0.00 2.43
481 482 1.407618 GACACACCCAACCTCAAAACC 59.592 52.381 0.00 0.00 0.00 3.27
482 483 1.272760 ACACACCCAACCTCAAAACCA 60.273 47.619 0.00 0.00 0.00 3.67
488 489 1.530655 AACCTCAAAACCAGGCCGG 60.531 57.895 11.48 11.48 42.50 6.13
492 493 3.302344 CAAAACCAGGCCGGGTGG 61.302 66.667 29.35 18.37 41.32 4.61
503 504 2.045926 CGGGTGGCTCCTGGAAAG 60.046 66.667 6.53 0.00 38.86 2.62
504 505 2.592993 CGGGTGGCTCCTGGAAAGA 61.593 63.158 6.53 0.00 38.86 2.52
505 506 1.002011 GGGTGGCTCCTGGAAAGAC 60.002 63.158 5.46 0.00 36.25 3.01
506 507 1.002011 GGTGGCTCCTGGAAAGACC 60.002 63.158 0.00 0.00 39.54 3.85
508 509 0.322008 GTGGCTCCTGGAAAGACCTG 60.322 60.000 0.00 0.00 39.86 4.00
509 510 1.377856 GGCTCCTGGAAAGACCTGC 60.378 63.158 0.00 0.00 39.86 4.85
510 511 1.376466 GCTCCTGGAAAGACCTGCA 59.624 57.895 0.00 0.00 39.86 4.41
511 512 0.250901 GCTCCTGGAAAGACCTGCAA 60.251 55.000 0.00 0.00 39.86 4.08
513 514 0.843309 TCCTGGAAAGACCTGCAACA 59.157 50.000 0.00 0.00 39.86 3.33
514 515 1.425066 TCCTGGAAAGACCTGCAACAT 59.575 47.619 0.00 0.00 39.86 2.71
515 516 1.815003 CCTGGAAAGACCTGCAACATC 59.185 52.381 0.00 0.00 39.86 3.06
516 517 1.466167 CTGGAAAGACCTGCAACATCG 59.534 52.381 0.00 0.00 39.86 3.84
517 518 1.071542 TGGAAAGACCTGCAACATCGA 59.928 47.619 0.00 0.00 39.86 3.59
518 519 2.290260 TGGAAAGACCTGCAACATCGAT 60.290 45.455 0.00 0.00 39.86 3.59
519 520 2.352960 GGAAAGACCTGCAACATCGATC 59.647 50.000 0.00 0.00 35.41 3.69
520 521 1.645034 AAGACCTGCAACATCGATCG 58.355 50.000 9.36 9.36 0.00 3.69
522 523 1.079197 ACCTGCAACATCGATCGCA 60.079 52.632 11.09 11.87 0.00 5.10
523 524 0.462581 ACCTGCAACATCGATCGCAT 60.463 50.000 11.09 2.08 33.15 4.73
524 525 0.234106 CCTGCAACATCGATCGCATC 59.766 55.000 11.09 0.00 33.15 3.91
526 527 1.191868 CTGCAACATCGATCGCATCTC 59.808 52.381 11.09 0.00 33.15 2.75
527 528 0.510359 GCAACATCGATCGCATCTCC 59.490 55.000 11.09 0.00 0.00 3.71
528 529 1.856802 CAACATCGATCGCATCTCCA 58.143 50.000 11.09 0.00 0.00 3.86
529 530 2.410939 CAACATCGATCGCATCTCCAT 58.589 47.619 11.09 0.00 0.00 3.41
530 531 2.360553 ACATCGATCGCATCTCCATC 57.639 50.000 11.09 0.00 0.00 3.51
531 532 1.891811 ACATCGATCGCATCTCCATCT 59.108 47.619 11.09 0.00 0.00 2.90
532 533 2.298446 ACATCGATCGCATCTCCATCTT 59.702 45.455 11.09 0.00 0.00 2.40
533 534 3.244009 ACATCGATCGCATCTCCATCTTT 60.244 43.478 11.09 0.00 0.00 2.52
534 535 3.018598 TCGATCGCATCTCCATCTTTC 57.981 47.619 11.09 0.00 0.00 2.62
535 536 2.625314 TCGATCGCATCTCCATCTTTCT 59.375 45.455 11.09 0.00 0.00 2.52
536 537 2.985809 CGATCGCATCTCCATCTTTCTC 59.014 50.000 0.26 0.00 0.00 2.87
537 538 3.305267 CGATCGCATCTCCATCTTTCTCT 60.305 47.826 0.26 0.00 0.00 3.10
538 539 4.630111 GATCGCATCTCCATCTTTCTCTT 58.370 43.478 0.00 0.00 0.00 2.85
539 540 4.052159 TCGCATCTCCATCTTTCTCTTC 57.948 45.455 0.00 0.00 0.00 2.87
540 541 3.703556 TCGCATCTCCATCTTTCTCTTCT 59.296 43.478 0.00 0.00 0.00 2.85
541 542 4.050553 CGCATCTCCATCTTTCTCTTCTC 58.949 47.826 0.00 0.00 0.00 2.87
542 543 4.379652 GCATCTCCATCTTTCTCTTCTCC 58.620 47.826 0.00 0.00 0.00 3.71
543 544 4.743348 GCATCTCCATCTTTCTCTTCTCCC 60.743 50.000 0.00 0.00 0.00 4.30
545 546 4.629122 TCTCCATCTTTCTCTTCTCCCAT 58.371 43.478 0.00 0.00 0.00 4.00
546 547 5.035556 TCTCCATCTTTCTCTTCTCCCATT 58.964 41.667 0.00 0.00 0.00 3.16
547 548 5.104610 TCTCCATCTTTCTCTTCTCCCATTG 60.105 44.000 0.00 0.00 0.00 2.82
549 550 3.356529 TCTTTCTCTTCTCCCATTGGC 57.643 47.619 0.00 0.00 0.00 4.52
550 551 2.012673 CTTTCTCTTCTCCCATTGGCG 58.987 52.381 0.00 0.00 0.00 5.69
552 553 0.250234 TCTCTTCTCCCATTGGCGTG 59.750 55.000 0.00 0.00 0.00 5.34
593 598 0.457853 ATGGTCACCGTCGATCGTTG 60.458 55.000 15.94 8.63 37.94 4.10
610 615 3.865825 GTTGAGCCAGCAGCAACAACC 62.866 57.143 20.13 10.19 46.03 3.77
964 983 3.585990 GGCACAACAGCAGCGTGT 61.586 61.111 0.85 0.00 35.83 4.49
983 1002 4.131088 GGCGAGGGTGACGAGGAC 62.131 72.222 0.00 0.00 0.00 3.85
1434 1453 4.955774 GACGTGTCCACCGCCGTT 62.956 66.667 0.00 0.00 33.03 4.44
1449 1468 1.706443 CCGTTAACGTCCTTCTCCAC 58.294 55.000 25.15 0.00 37.74 4.02
1761 1780 1.003233 CAGTACCTGAACCCCAAGGAC 59.997 57.143 0.00 0.00 32.90 3.85
2003 2022 1.719780 CAACGACCTCTACTTCAACGC 59.280 52.381 0.00 0.00 0.00 4.84
2109 2128 0.249155 TGGTGAACTCGTCGGTCAAC 60.249 55.000 4.05 4.05 0.00 3.18
2286 2305 3.670377 GGCACCCGCAAAGTGGTC 61.670 66.667 0.00 0.00 41.24 4.02
2289 2308 4.250305 ACCCGCAAAGTGGTCGCT 62.250 61.111 0.00 0.00 0.00 4.93
2431 2450 2.526873 ACACGGGCCAGTCCTTCT 60.527 61.111 5.20 0.00 34.39 2.85
2432 2451 2.266055 CACGGGCCAGTCCTTCTC 59.734 66.667 5.20 0.00 34.39 2.87
2442 2461 0.035458 AGTCCTTCTCCAACGGCAAG 59.965 55.000 0.00 0.00 0.00 4.01
2443 2462 0.955919 GTCCTTCTCCAACGGCAAGG 60.956 60.000 4.84 4.84 35.24 3.61
2444 2463 1.675641 CCTTCTCCAACGGCAAGGG 60.676 63.158 0.00 0.00 32.29 3.95
2958 3512 0.530744 CCAACATCCTCCTCGACGAA 59.469 55.000 0.00 0.00 0.00 3.85
3570 4199 1.342074 TCGATCATCCATCCCTCCAC 58.658 55.000 0.00 0.00 0.00 4.02
3711 4357 5.182380 TCCGATCATAACTCAAAACCAAACC 59.818 40.000 0.00 0.00 0.00 3.27
3730 4376 2.014857 CCAGGTCGATCGAAGAGTGTA 58.985 52.381 21.31 0.00 43.63 2.90
3731 4377 2.619177 CCAGGTCGATCGAAGAGTGTAT 59.381 50.000 21.31 0.00 43.63 2.29
3772 4418 2.063266 TGTGTCTCAATCGCGTTTACC 58.937 47.619 5.77 0.00 0.00 2.85
3897 4545 3.128415 GCTGGAGCTCATTTCTCTTTTCC 59.872 47.826 17.19 0.00 38.21 3.13
3898 4546 3.690460 TGGAGCTCATTTCTCTTTTCCC 58.310 45.455 17.19 0.00 0.00 3.97
3903 4551 1.074727 TCATTTCTCTTTTCCCCCGCA 59.925 47.619 0.00 0.00 0.00 5.69
3904 4552 2.102578 CATTTCTCTTTTCCCCCGCAT 58.897 47.619 0.00 0.00 0.00 4.73
3909 4557 2.040545 TCTCTTTTCCCCCGCATAACAA 59.959 45.455 0.00 0.00 0.00 2.83
3917 4565 0.652592 CCCGCATAACAAAGAGCTCG 59.347 55.000 8.37 0.00 0.00 5.03
3924 4572 4.390297 GCATAACAAAGAGCTCGTTTCTCT 59.610 41.667 12.50 0.54 42.31 3.10
3932 4580 8.660373 ACAAAGAGCTCGTTTCTCTTAATATTG 58.340 33.333 12.50 0.18 46.77 1.90
3933 4581 8.873830 CAAAGAGCTCGTTTCTCTTAATATTGA 58.126 33.333 12.50 0.00 46.77 2.57
3939 4587 8.778358 GCTCGTTTCTCTTAATATTGATTGGAT 58.222 33.333 0.00 0.00 0.00 3.41
3958 4606 8.870075 ATTGGATTATTAGTAGGATTTCCAGC 57.130 34.615 0.00 0.00 38.89 4.85
3984 4632 3.742433 AGCTGAGGATCTTGTTATCGG 57.258 47.619 0.00 0.00 34.92 4.18
3986 4634 3.900601 AGCTGAGGATCTTGTTATCGGAT 59.099 43.478 0.00 0.00 34.92 4.18
4050 4702 4.911390 ACAAAATAAGAGTCCTGGTCCTG 58.089 43.478 0.00 0.00 0.00 3.86
4056 4711 1.893919 GAGTCCTGGTCCTGCTGGTC 61.894 65.000 9.73 3.79 34.23 4.02
4084 4739 6.919662 CCATTGAGTTTTACCACATATGATGC 59.080 38.462 10.38 0.00 0.00 3.91
4129 4785 9.894783 CTAAAAGCTATGATTGATGATTTCCAG 57.105 33.333 0.00 0.00 0.00 3.86
4143 4799 8.206867 TGATGATTTCCAGAGAGGTAACATTAG 58.793 37.037 0.00 0.00 39.02 1.73
4158 4814 5.824904 AACATTAGCATTGCTACCTTGAG 57.175 39.130 17.79 7.14 41.12 3.02
4179 4839 8.929260 TTGAGCTATGGAATTATCACATTGAT 57.071 30.769 0.00 0.00 40.72 2.57
4197 4857 5.902613 TTGATTCCTAAAAGCAGTGATGG 57.097 39.130 0.00 0.00 0.00 3.51
4246 4906 7.396055 CCCATTTCCCTCTTGAATGTTAGTTTA 59.604 37.037 0.00 0.00 0.00 2.01
4362 5544 9.462606 AAGTCCATTTTACTACCCTGAATAAAG 57.537 33.333 0.00 0.00 0.00 1.85
4364 5546 9.239551 GTCCATTTTACTACCCTGAATAAAGTT 57.760 33.333 0.00 0.00 0.00 2.66
4365 5547 9.238368 TCCATTTTACTACCCTGAATAAAGTTG 57.762 33.333 0.00 0.00 0.00 3.16
4371 5553 4.193240 ACCCTGAATAAAGTTGGTGGTT 57.807 40.909 0.00 0.00 0.00 3.67
4372 5554 4.149598 ACCCTGAATAAAGTTGGTGGTTC 58.850 43.478 0.00 0.00 0.00 3.62
4373 5555 4.148838 CCCTGAATAAAGTTGGTGGTTCA 58.851 43.478 0.00 0.00 0.00 3.18
4374 5556 4.022329 CCCTGAATAAAGTTGGTGGTTCAC 60.022 45.833 0.00 0.00 0.00 3.18
4375 5557 4.582656 CCTGAATAAAGTTGGTGGTTCACA 59.417 41.667 0.38 0.00 35.86 3.58
4376 5558 5.068460 CCTGAATAAAGTTGGTGGTTCACAA 59.932 40.000 0.38 0.00 35.86 3.33
4377 5559 6.239289 CCTGAATAAAGTTGGTGGTTCACAAT 60.239 38.462 0.38 0.00 35.86 2.71
4378 5560 7.040062 CCTGAATAAAGTTGGTGGTTCACAATA 60.040 37.037 0.38 0.00 35.86 1.90
4379 5561 7.653647 TGAATAAAGTTGGTGGTTCACAATAC 58.346 34.615 0.38 0.00 35.86 1.89
4380 5562 4.929819 AAAGTTGGTGGTTCACAATACC 57.070 40.909 0.38 0.00 35.86 2.73
4381 5563 2.871453 AGTTGGTGGTTCACAATACCC 58.129 47.619 0.38 0.00 35.86 3.69
4384 5566 0.702316 GGTGGTTCACAATACCCCCT 59.298 55.000 0.38 0.00 35.86 4.79
4385 5567 1.340697 GGTGGTTCACAATACCCCCTC 60.341 57.143 0.38 0.00 35.86 4.30
4386 5568 1.353022 GTGGTTCACAATACCCCCTCA 59.647 52.381 0.00 0.00 34.66 3.86
4388 5570 2.241176 TGGTTCACAATACCCCCTCATC 59.759 50.000 0.00 0.00 34.66 2.92
4389 5571 2.509964 GGTTCACAATACCCCCTCATCT 59.490 50.000 0.00 0.00 0.00 2.90
4390 5572 3.714798 GGTTCACAATACCCCCTCATCTA 59.285 47.826 0.00 0.00 0.00 1.98
4391 5573 4.165372 GGTTCACAATACCCCCTCATCTAA 59.835 45.833 0.00 0.00 0.00 2.10
4394 5576 6.590656 TCACAATACCCCCTCATCTAATTT 57.409 37.500 0.00 0.00 0.00 1.82
4396 5578 7.060421 TCACAATACCCCCTCATCTAATTTTC 58.940 38.462 0.00 0.00 0.00 2.29
4397 5579 7.062957 CACAATACCCCCTCATCTAATTTTCT 58.937 38.462 0.00 0.00 0.00 2.52
4398 5580 7.013655 CACAATACCCCCTCATCTAATTTTCTG 59.986 40.741 0.00 0.00 0.00 3.02
4399 5581 6.848562 ATACCCCCTCATCTAATTTTCTGT 57.151 37.500 0.00 0.00 0.00 3.41
4400 5582 5.536497 ACCCCCTCATCTAATTTTCTGTT 57.464 39.130 0.00 0.00 0.00 3.16
4402 5584 4.889995 CCCCCTCATCTAATTTTCTGTTCC 59.110 45.833 0.00 0.00 0.00 3.62
4403 5585 5.340360 CCCCCTCATCTAATTTTCTGTTCCT 60.340 44.000 0.00 0.00 0.00 3.36
4404 5586 6.190587 CCCCTCATCTAATTTTCTGTTCCTT 58.809 40.000 0.00 0.00 0.00 3.36
4406 5588 7.148000 CCCCTCATCTAATTTTCTGTTCCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
4407 5589 7.394359 CCCTCATCTAATTTTCTGTTCCTTTCA 59.606 37.037 0.00 0.00 0.00 2.69
4408 5590 8.239998 CCTCATCTAATTTTCTGTTCCTTTCAC 58.760 37.037 0.00 0.00 0.00 3.18
4409 5591 8.110860 TCATCTAATTTTCTGTTCCTTTCACC 57.889 34.615 0.00 0.00 0.00 4.02
4410 5592 6.894339 TCTAATTTTCTGTTCCTTTCACCC 57.106 37.500 0.00 0.00 0.00 4.61
4411 5593 4.955811 AATTTTCTGTTCCTTTCACCCC 57.044 40.909 0.00 0.00 0.00 4.95
4412 5594 2.375014 TTTCTGTTCCTTTCACCCCC 57.625 50.000 0.00 0.00 0.00 5.40
4413 5595 1.529744 TTCTGTTCCTTTCACCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
4414 5596 2.426431 TCTGTTCCTTTCACCCCCTA 57.574 50.000 0.00 0.00 0.00 3.53
4415 5597 2.708759 TCTGTTCCTTTCACCCCCTAA 58.291 47.619 0.00 0.00 0.00 2.69
4416 5598 3.057586 TCTGTTCCTTTCACCCCCTAAA 58.942 45.455 0.00 0.00 0.00 1.85
4417 5599 3.154710 CTGTTCCTTTCACCCCCTAAAC 58.845 50.000 0.00 0.00 0.00 2.01
4418 5600 2.514582 TGTTCCTTTCACCCCCTAAACA 59.485 45.455 0.00 0.00 0.00 2.83
4419 5601 3.052793 TGTTCCTTTCACCCCCTAAACAA 60.053 43.478 0.00 0.00 0.00 2.83
4420 5602 3.962063 GTTCCTTTCACCCCCTAAACAAA 59.038 43.478 0.00 0.00 0.00 2.83
4421 5603 3.568443 TCCTTTCACCCCCTAAACAAAC 58.432 45.455 0.00 0.00 0.00 2.93
4422 5604 2.631062 CCTTTCACCCCCTAAACAAACC 59.369 50.000 0.00 0.00 0.00 3.27
4423 5605 2.385135 TTCACCCCCTAAACAAACCC 57.615 50.000 0.00 0.00 0.00 4.11
4424 5606 1.232909 TCACCCCCTAAACAAACCCA 58.767 50.000 0.00 0.00 0.00 4.51
4425 5607 1.790157 TCACCCCCTAAACAAACCCAT 59.210 47.619 0.00 0.00 0.00 4.00
4426 5608 2.994581 TCACCCCCTAAACAAACCCATA 59.005 45.455 0.00 0.00 0.00 2.74
4427 5609 3.093814 CACCCCCTAAACAAACCCATAC 58.906 50.000 0.00 0.00 0.00 2.39
4428 5610 2.043389 ACCCCCTAAACAAACCCATACC 59.957 50.000 0.00 0.00 0.00 2.73
4429 5611 2.371306 CCCCTAAACAAACCCATACCG 58.629 52.381 0.00 0.00 0.00 4.02
4430 5612 2.371306 CCCTAAACAAACCCATACCGG 58.629 52.381 0.00 0.00 0.00 5.28
4431 5613 2.026075 CCCTAAACAAACCCATACCGGA 60.026 50.000 9.46 0.00 36.56 5.14
4432 5614 3.372241 CCCTAAACAAACCCATACCGGAT 60.372 47.826 9.46 0.00 36.56 4.18
4433 5615 3.630312 CCTAAACAAACCCATACCGGATG 59.370 47.826 9.46 7.74 36.56 3.51
4434 5616 3.443145 AAACAAACCCATACCGGATGA 57.557 42.857 9.46 0.00 37.82 2.92
4435 5617 3.443145 AACAAACCCATACCGGATGAA 57.557 42.857 9.46 0.00 37.82 2.57
4436 5618 3.443145 ACAAACCCATACCGGATGAAA 57.557 42.857 9.46 0.00 37.82 2.69
4437 5619 3.352648 ACAAACCCATACCGGATGAAAG 58.647 45.455 9.46 3.12 37.82 2.62
4438 5620 3.009695 ACAAACCCATACCGGATGAAAGA 59.990 43.478 9.46 0.00 37.82 2.52
4439 5621 4.013728 CAAACCCATACCGGATGAAAGAA 58.986 43.478 9.46 0.00 37.82 2.52
4440 5622 3.277142 ACCCATACCGGATGAAAGAAC 57.723 47.619 9.46 0.00 37.82 3.01
4441 5623 2.092592 ACCCATACCGGATGAAAGAACC 60.093 50.000 9.46 0.00 37.82 3.62
4442 5624 2.572290 CCATACCGGATGAAAGAACCC 58.428 52.381 9.46 0.00 37.82 4.11
4443 5625 2.572290 CATACCGGATGAAAGAACCCC 58.428 52.381 9.46 0.00 37.82 4.95
4444 5626 0.913924 TACCGGATGAAAGAACCCCC 59.086 55.000 9.46 0.00 0.00 5.40
4458 5640 3.015145 CCCCCGGGTGGATTGTCT 61.015 66.667 21.85 0.00 37.49 3.41
4459 5641 2.590092 CCCCGGGTGGATTGTCTC 59.410 66.667 21.85 0.00 37.49 3.36
4460 5642 1.995626 CCCCGGGTGGATTGTCTCT 60.996 63.158 21.85 0.00 37.49 3.10
4461 5643 0.689745 CCCCGGGTGGATTGTCTCTA 60.690 60.000 21.85 0.00 37.49 2.43
4462 5644 0.464452 CCCGGGTGGATTGTCTCTAC 59.536 60.000 14.18 0.00 37.49 2.59
4463 5645 1.486211 CCGGGTGGATTGTCTCTACT 58.514 55.000 0.00 0.00 35.76 2.57
4464 5646 1.831736 CCGGGTGGATTGTCTCTACTT 59.168 52.381 0.00 0.00 35.76 2.24
4465 5647 2.418746 CCGGGTGGATTGTCTCTACTTG 60.419 54.545 0.00 0.00 35.76 3.16
4466 5648 2.633488 GGGTGGATTGTCTCTACTTGC 58.367 52.381 0.00 0.00 35.76 4.01
4467 5649 2.237392 GGGTGGATTGTCTCTACTTGCT 59.763 50.000 0.00 0.00 35.76 3.91
4468 5650 3.265791 GGTGGATTGTCTCTACTTGCTG 58.734 50.000 0.00 0.00 35.76 4.41
4469 5651 2.675348 GTGGATTGTCTCTACTTGCTGC 59.325 50.000 0.00 0.00 32.84 5.25
4470 5652 2.568956 TGGATTGTCTCTACTTGCTGCT 59.431 45.455 0.00 0.00 0.00 4.24
4471 5653 2.935201 GGATTGTCTCTACTTGCTGCTG 59.065 50.000 0.00 0.00 0.00 4.41
4472 5654 3.368843 GGATTGTCTCTACTTGCTGCTGA 60.369 47.826 0.00 0.00 0.00 4.26
4473 5655 3.969287 TTGTCTCTACTTGCTGCTGAT 57.031 42.857 0.00 0.00 0.00 2.90
4474 5656 3.242549 TGTCTCTACTTGCTGCTGATG 57.757 47.619 0.00 0.00 0.00 3.07
4475 5657 2.564504 TGTCTCTACTTGCTGCTGATGT 59.435 45.455 0.00 0.00 0.00 3.06
4476 5658 2.928757 GTCTCTACTTGCTGCTGATGTG 59.071 50.000 0.00 0.00 0.00 3.21
4477 5659 2.093816 TCTCTACTTGCTGCTGATGTGG 60.094 50.000 0.00 0.00 0.00 4.17
4478 5660 0.731417 CTACTTGCTGCTGATGTGGC 59.269 55.000 0.00 0.00 0.00 5.01
4479 5661 0.036590 TACTTGCTGCTGATGTGGCA 59.963 50.000 0.00 0.00 38.10 4.92
4480 5662 0.611062 ACTTGCTGCTGATGTGGCAT 60.611 50.000 0.00 0.00 39.07 4.40
4481 5663 0.530744 CTTGCTGCTGATGTGGCATT 59.469 50.000 0.00 0.00 39.07 3.56
4482 5664 0.245266 TTGCTGCTGATGTGGCATTG 59.755 50.000 0.00 0.00 39.07 2.82
4483 5665 1.141019 GCTGCTGATGTGGCATTGG 59.859 57.895 0.00 0.00 39.07 3.16
4484 5666 1.601419 GCTGCTGATGTGGCATTGGT 61.601 55.000 0.00 0.00 39.07 3.67
4485 5667 0.454600 CTGCTGATGTGGCATTGGTC 59.545 55.000 0.00 0.00 39.07 4.02
4486 5668 0.251253 TGCTGATGTGGCATTGGTCA 60.251 50.000 0.00 0.00 34.56 4.02
4487 5669 0.889994 GCTGATGTGGCATTGGTCAA 59.110 50.000 0.00 0.00 0.00 3.18
4488 5670 1.403249 GCTGATGTGGCATTGGTCAAC 60.403 52.381 0.00 0.00 0.00 3.18
4489 5671 1.887854 CTGATGTGGCATTGGTCAACA 59.112 47.619 0.00 0.00 0.00 3.33
4490 5672 1.887854 TGATGTGGCATTGGTCAACAG 59.112 47.619 0.00 0.00 0.00 3.16
4491 5673 1.888512 GATGTGGCATTGGTCAACAGT 59.111 47.619 0.00 0.00 0.00 3.55
4492 5674 1.031235 TGTGGCATTGGTCAACAGTG 58.969 50.000 0.00 0.00 39.59 3.66
4493 5675 0.314935 GTGGCATTGGTCAACAGTGG 59.685 55.000 0.00 0.00 37.30 4.00
4494 5676 0.106268 TGGCATTGGTCAACAGTGGT 60.106 50.000 0.00 0.00 37.30 4.16
4495 5677 1.039856 GGCATTGGTCAACAGTGGTT 58.960 50.000 0.00 0.00 37.30 3.67
4496 5678 1.412343 GGCATTGGTCAACAGTGGTTT 59.588 47.619 0.00 0.00 37.30 3.27
4497 5679 2.158971 GGCATTGGTCAACAGTGGTTTT 60.159 45.455 0.00 0.00 37.30 2.43
4498 5680 2.865551 GCATTGGTCAACAGTGGTTTTG 59.134 45.455 0.00 0.00 37.30 2.44
4499 5681 3.430098 GCATTGGTCAACAGTGGTTTTGA 60.430 43.478 0.00 0.00 37.30 2.69
4503 5685 3.420839 GTCAACAGTGGTTTTGACCTG 57.579 47.619 12.02 0.00 43.90 4.00
4504 5686 1.748493 TCAACAGTGGTTTTGACCTGC 59.252 47.619 0.00 0.00 34.21 4.85
4505 5687 0.738389 AACAGTGGTTTTGACCTGCG 59.262 50.000 0.00 0.00 31.83 5.18
4506 5688 1.101049 ACAGTGGTTTTGACCTGCGG 61.101 55.000 0.00 0.00 0.00 5.69
4507 5689 1.528309 AGTGGTTTTGACCTGCGGG 60.528 57.895 11.02 11.02 38.88 6.13
4529 5711 2.034687 CCTCCCTTGGCAGGTGTG 59.965 66.667 0.00 0.00 38.79 3.82
4530 5712 2.034687 CTCCCTTGGCAGGTGTGG 59.965 66.667 0.00 0.00 38.79 4.17
4537 5719 2.673523 GGCAGGTGTGGCTGAGAT 59.326 61.111 0.00 0.00 45.85 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.287818 TGGGACTTATAGGGACTTATTTAAGTT 57.712 33.333 4.57 0.00 45.84 2.66
60 61 6.612049 CACTTTAAGTCCCTATAAGTCCCTCT 59.388 42.308 0.00 0.00 0.00 3.69
93 94 7.615757 CCTTGAGGGTTTTATTTCATAAGTCCT 59.384 37.037 0.00 0.00 0.00 3.85
94 95 7.614192 TCCTTGAGGGTTTTATTTCATAAGTCC 59.386 37.037 0.00 0.00 36.25 3.85
168 169 7.232737 CCTAAAAAGTCCCTATCTGTTTGGTTT 59.767 37.037 0.00 0.00 0.00 3.27
178 179 5.437946 CCAAGTCCCTAAAAAGTCCCTATC 58.562 45.833 0.00 0.00 0.00 2.08
179 180 4.229812 CCCAAGTCCCTAAAAAGTCCCTAT 59.770 45.833 0.00 0.00 0.00 2.57
233 234 3.421844 GCCCTGTTTGGTTCATAAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
251 252 2.887152 CCAGCAATTCATACTAAGGCCC 59.113 50.000 0.00 0.00 0.00 5.80
257 258 7.362834 CCATTGTGAAACCAGCAATTCATACTA 60.363 37.037 0.00 0.00 37.82 1.82
261 262 4.563993 CCCATTGTGAAACCAGCAATTCAT 60.564 41.667 0.00 0.00 37.82 2.57
262 263 3.244146 CCCATTGTGAAACCAGCAATTCA 60.244 43.478 0.00 0.00 34.36 2.57
263 264 3.328505 CCCATTGTGAAACCAGCAATTC 58.671 45.455 0.00 0.00 34.36 2.17
264 265 2.550639 GCCCATTGTGAAACCAGCAATT 60.551 45.455 0.00 0.00 34.36 2.32
265 266 1.002315 GCCCATTGTGAAACCAGCAAT 59.998 47.619 0.00 0.00 34.36 3.56
266 267 0.392336 GCCCATTGTGAAACCAGCAA 59.608 50.000 0.00 0.00 34.36 3.91
267 268 1.804396 CGCCCATTGTGAAACCAGCA 61.804 55.000 0.00 0.00 34.36 4.41
268 269 1.080569 CGCCCATTGTGAAACCAGC 60.081 57.895 0.00 0.00 34.36 4.85
269 270 1.135315 CATCGCCCATTGTGAAACCAG 60.135 52.381 0.00 0.00 36.97 4.00
270 271 0.887247 CATCGCCCATTGTGAAACCA 59.113 50.000 0.00 0.00 36.97 3.67
271 272 1.173043 TCATCGCCCATTGTGAAACC 58.827 50.000 0.00 0.00 36.97 3.27
272 273 3.057596 TCTTTCATCGCCCATTGTGAAAC 60.058 43.478 0.00 0.00 36.11 2.78
274 275 2.789213 TCTTTCATCGCCCATTGTGAA 58.211 42.857 0.00 0.00 36.97 3.18
275 276 2.488204 TCTTTCATCGCCCATTGTGA 57.512 45.000 0.00 0.00 38.00 3.58
277 278 3.632145 GGTTATCTTTCATCGCCCATTGT 59.368 43.478 0.00 0.00 0.00 2.71
278 279 3.885297 AGGTTATCTTTCATCGCCCATTG 59.115 43.478 0.00 0.00 0.00 2.82
279 280 4.137543 GAGGTTATCTTTCATCGCCCATT 58.862 43.478 0.00 0.00 0.00 3.16
280 281 3.136443 TGAGGTTATCTTTCATCGCCCAT 59.864 43.478 0.00 0.00 0.00 4.00
282 283 3.194005 TGAGGTTATCTTTCATCGCCC 57.806 47.619 0.00 0.00 0.00 6.13
283 284 4.394920 TGTTTGAGGTTATCTTTCATCGCC 59.605 41.667 0.00 0.00 0.00 5.54
284 285 5.122396 ACTGTTTGAGGTTATCTTTCATCGC 59.878 40.000 0.00 0.00 0.00 4.58
285 286 6.727824 ACTGTTTGAGGTTATCTTTCATCG 57.272 37.500 0.00 0.00 0.00 3.84
286 287 9.185192 CAAAACTGTTTGAGGTTATCTTTCATC 57.815 33.333 6.53 0.00 45.99 2.92
289 290 7.203218 AGCAAAACTGTTTGAGGTTATCTTTC 58.797 34.615 6.53 0.00 45.99 2.62
291 292 6.715347 AGCAAAACTGTTTGAGGTTATCTT 57.285 33.333 6.53 0.00 45.99 2.40
292 293 7.817418 TTAGCAAAACTGTTTGAGGTTATCT 57.183 32.000 6.53 0.00 45.99 1.98
293 294 7.114953 GCTTTAGCAAAACTGTTTGAGGTTATC 59.885 37.037 6.53 0.00 45.99 1.75
294 295 6.923508 GCTTTAGCAAAACTGTTTGAGGTTAT 59.076 34.615 6.53 0.00 45.99 1.89
295 296 6.270064 GCTTTAGCAAAACTGTTTGAGGTTA 58.730 36.000 6.53 0.35 45.99 2.85
296 297 5.109210 GCTTTAGCAAAACTGTTTGAGGTT 58.891 37.500 6.53 1.17 45.99 3.50
297 298 4.682787 GCTTTAGCAAAACTGTTTGAGGT 58.317 39.130 6.53 10.53 45.99 3.85
331 332 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
332 333 6.867662 ACTTAGATGTGCAATACTTATGGC 57.132 37.500 0.00 0.00 33.16 4.40
333 334 8.668510 AGAACTTAGATGTGCAATACTTATGG 57.331 34.615 0.00 0.00 0.00 2.74
337 338 9.319143 GACATAGAACTTAGATGTGCAATACTT 57.681 33.333 0.00 0.00 33.99 2.24
338 339 8.478066 TGACATAGAACTTAGATGTGCAATACT 58.522 33.333 0.00 0.00 33.99 2.12
339 340 8.648557 TGACATAGAACTTAGATGTGCAATAC 57.351 34.615 0.00 0.00 33.99 1.89
340 341 9.836864 AATGACATAGAACTTAGATGTGCAATA 57.163 29.630 0.00 0.00 33.99 1.90
341 342 8.618677 CAATGACATAGAACTTAGATGTGCAAT 58.381 33.333 0.00 0.00 33.99 3.56
342 343 7.823799 TCAATGACATAGAACTTAGATGTGCAA 59.176 33.333 0.00 0.00 33.99 4.08
343 344 7.330262 TCAATGACATAGAACTTAGATGTGCA 58.670 34.615 0.00 0.00 33.99 4.57
344 345 7.776933 TCAATGACATAGAACTTAGATGTGC 57.223 36.000 0.00 0.00 33.99 4.57
349 350 9.230122 TGCAAAATCAATGACATAGAACTTAGA 57.770 29.630 0.00 0.00 0.00 2.10
352 353 7.699391 CGATGCAAAATCAATGACATAGAACTT 59.301 33.333 0.00 0.00 0.00 2.66
353 354 7.066163 TCGATGCAAAATCAATGACATAGAACT 59.934 33.333 0.00 0.00 0.00 3.01
354 355 7.188834 TCGATGCAAAATCAATGACATAGAAC 58.811 34.615 0.00 0.00 0.00 3.01
355 356 7.280652 TCTCGATGCAAAATCAATGACATAGAA 59.719 33.333 0.00 0.00 0.00 2.10
356 357 6.762661 TCTCGATGCAAAATCAATGACATAGA 59.237 34.615 0.00 0.00 0.00 1.98
357 358 6.951643 TCTCGATGCAAAATCAATGACATAG 58.048 36.000 0.00 0.00 0.00 2.23
358 359 6.923928 TCTCGATGCAAAATCAATGACATA 57.076 33.333 0.00 0.00 0.00 2.29
359 360 5.823209 TCTCGATGCAAAATCAATGACAT 57.177 34.783 0.00 0.00 0.00 3.06
360 361 5.823209 ATCTCGATGCAAAATCAATGACA 57.177 34.783 0.00 0.00 0.00 3.58
361 362 6.529125 ACAAATCTCGATGCAAAATCAATGAC 59.471 34.615 0.00 0.00 0.00 3.06
362 363 6.528774 CACAAATCTCGATGCAAAATCAATGA 59.471 34.615 0.00 0.00 0.00 2.57
363 364 6.309494 ACACAAATCTCGATGCAAAATCAATG 59.691 34.615 0.00 0.00 0.00 2.82
364 365 6.309494 CACACAAATCTCGATGCAAAATCAAT 59.691 34.615 0.00 0.00 0.00 2.57
365 366 5.630264 CACACAAATCTCGATGCAAAATCAA 59.370 36.000 0.00 0.00 0.00 2.57
366 367 5.048852 TCACACAAATCTCGATGCAAAATCA 60.049 36.000 0.00 0.00 0.00 2.57
367 368 5.393124 TCACACAAATCTCGATGCAAAATC 58.607 37.500 0.00 0.00 0.00 2.17
368 369 5.375417 TCACACAAATCTCGATGCAAAAT 57.625 34.783 0.00 0.00 0.00 1.82
369 370 4.827304 TCACACAAATCTCGATGCAAAA 57.173 36.364 0.00 0.00 0.00 2.44
370 371 4.827304 TTCACACAAATCTCGATGCAAA 57.173 36.364 0.00 0.00 0.00 3.68
371 372 6.682423 ATATTCACACAAATCTCGATGCAA 57.318 33.333 0.00 0.00 0.00 4.08
372 373 6.682423 AATATTCACACAAATCTCGATGCA 57.318 33.333 0.00 0.00 0.00 3.96
373 374 7.975866 AAAATATTCACACAAATCTCGATGC 57.024 32.000 0.00 0.00 0.00 3.91
399 400 5.581126 AGTGAGTGAATCAAGCACAAAAA 57.419 34.783 15.75 0.00 40.43 1.94
400 401 5.581126 AAGTGAGTGAATCAAGCACAAAA 57.419 34.783 15.75 0.00 40.43 2.44
401 402 6.054941 TCTAAGTGAGTGAATCAAGCACAAA 58.945 36.000 15.75 5.63 40.43 2.83
402 403 5.610398 TCTAAGTGAGTGAATCAAGCACAA 58.390 37.500 15.75 5.89 40.43 3.33
403 404 5.213891 TCTAAGTGAGTGAATCAAGCACA 57.786 39.130 15.75 0.00 40.43 4.57
404 405 5.641209 ACATCTAAGTGAGTGAATCAAGCAC 59.359 40.000 8.20 8.20 40.43 4.40
405 406 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
406 407 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
407 408 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
408 409 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
409 410 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
410 411 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
411 412 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
412 413 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
413 414 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
414 415 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
415 416 9.155975 CTTTAGTTATTGCACATCTAAGTGAGT 57.844 33.333 0.00 0.00 42.05 3.41
416 417 8.119226 GCTTTAGTTATTGCACATCTAAGTGAG 58.881 37.037 0.00 0.00 42.05 3.51
417 418 7.606073 TGCTTTAGTTATTGCACATCTAAGTGA 59.394 33.333 0.00 0.00 42.05 3.41
418 419 7.751732 TGCTTTAGTTATTGCACATCTAAGTG 58.248 34.615 0.00 0.00 42.37 3.16
419 420 7.921786 TGCTTTAGTTATTGCACATCTAAGT 57.078 32.000 0.00 0.00 0.00 2.24
428 429 8.146479 CATCTAGATGTGCTTTAGTTATTGCA 57.854 34.615 22.42 0.00 34.23 4.08
444 445 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
445 446 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
446 447 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
447 448 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
448 449 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
449 450 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
450 451 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
451 452 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
452 453 1.057275 TTGGGTGTGTCTAGGGCACA 61.057 55.000 14.22 14.22 43.60 4.57
453 454 0.605589 GTTGGGTGTGTCTAGGGCAC 60.606 60.000 10.20 10.20 37.37 5.01
454 455 1.758592 GTTGGGTGTGTCTAGGGCA 59.241 57.895 0.00 0.00 0.00 5.36
455 456 1.002502 GGTTGGGTGTGTCTAGGGC 60.003 63.158 0.00 0.00 0.00 5.19
456 457 0.613777 GAGGTTGGGTGTGTCTAGGG 59.386 60.000 0.00 0.00 0.00 3.53
457 458 1.348064 TGAGGTTGGGTGTGTCTAGG 58.652 55.000 0.00 0.00 0.00 3.02
458 459 3.485463 TTTGAGGTTGGGTGTGTCTAG 57.515 47.619 0.00 0.00 0.00 2.43
459 460 3.547746 GTTTTGAGGTTGGGTGTGTCTA 58.452 45.455 0.00 0.00 0.00 2.59
460 461 2.375146 GTTTTGAGGTTGGGTGTGTCT 58.625 47.619 0.00 0.00 0.00 3.41
461 462 1.407618 GGTTTTGAGGTTGGGTGTGTC 59.592 52.381 0.00 0.00 0.00 3.67
462 463 1.272760 TGGTTTTGAGGTTGGGTGTGT 60.273 47.619 0.00 0.00 0.00 3.72
463 464 1.408702 CTGGTTTTGAGGTTGGGTGTG 59.591 52.381 0.00 0.00 0.00 3.82
464 465 1.687996 CCTGGTTTTGAGGTTGGGTGT 60.688 52.381 0.00 0.00 0.00 4.16
465 466 1.039856 CCTGGTTTTGAGGTTGGGTG 58.960 55.000 0.00 0.00 0.00 4.61
466 467 0.759060 GCCTGGTTTTGAGGTTGGGT 60.759 55.000 0.00 0.00 32.60 4.51
467 468 1.471829 GGCCTGGTTTTGAGGTTGGG 61.472 60.000 0.00 0.00 32.60 4.12
468 469 1.805428 CGGCCTGGTTTTGAGGTTGG 61.805 60.000 0.00 0.00 32.60 3.77
469 470 1.659794 CGGCCTGGTTTTGAGGTTG 59.340 57.895 0.00 0.00 32.60 3.77
470 471 1.530655 CCGGCCTGGTTTTGAGGTT 60.531 57.895 0.00 0.00 32.60 3.50
471 472 2.115266 CCGGCCTGGTTTTGAGGT 59.885 61.111 0.00 0.00 32.60 3.85
472 473 2.676471 CCCGGCCTGGTTTTGAGG 60.676 66.667 4.74 0.00 35.15 3.86
473 474 2.115266 ACCCGGCCTGGTTTTGAG 59.885 61.111 14.03 0.00 33.91 3.02
474 475 2.203422 CACCCGGCCTGGTTTTGA 60.203 61.111 17.47 0.00 36.12 2.69
475 476 3.302344 CCACCCGGCCTGGTTTTG 61.302 66.667 17.47 5.69 36.12 2.44
488 489 1.002011 GGTCTTTCCAGGAGCCACC 60.002 63.158 0.00 0.00 39.35 4.61
492 493 0.250901 TTGCAGGTCTTTCCAGGAGC 60.251 55.000 0.00 0.00 39.02 4.70
493 494 1.202806 TGTTGCAGGTCTTTCCAGGAG 60.203 52.381 0.00 0.00 39.02 3.69
498 499 1.808411 TCGATGTTGCAGGTCTTTCC 58.192 50.000 0.00 0.00 0.00 3.13
502 503 0.807667 GCGATCGATGTTGCAGGTCT 60.808 55.000 21.57 0.00 0.00 3.85
503 504 1.083806 TGCGATCGATGTTGCAGGTC 61.084 55.000 21.57 0.00 33.65 3.85
504 505 0.462581 ATGCGATCGATGTTGCAGGT 60.463 50.000 21.57 4.19 41.54 4.00
505 506 0.234106 GATGCGATCGATGTTGCAGG 59.766 55.000 21.57 0.00 41.54 4.85
506 507 1.191868 GAGATGCGATCGATGTTGCAG 59.808 52.381 21.57 0.00 41.54 4.41
508 509 0.510359 GGAGATGCGATCGATGTTGC 59.490 55.000 21.57 4.66 0.00 4.17
509 510 1.856802 TGGAGATGCGATCGATGTTG 58.143 50.000 21.57 0.00 0.00 3.33
510 511 2.298446 AGATGGAGATGCGATCGATGTT 59.702 45.455 21.57 0.18 36.89 2.71
511 512 1.891811 AGATGGAGATGCGATCGATGT 59.108 47.619 21.57 8.07 36.89 3.06
513 514 3.257873 AGAAAGATGGAGATGCGATCGAT 59.742 43.478 21.57 9.56 36.89 3.59
514 515 2.625314 AGAAAGATGGAGATGCGATCGA 59.375 45.455 21.57 4.34 36.89 3.59
515 516 2.985809 GAGAAAGATGGAGATGCGATCG 59.014 50.000 11.69 11.69 36.89 3.69
516 517 4.255833 AGAGAAAGATGGAGATGCGATC 57.744 45.455 0.00 0.00 32.44 3.69
517 518 4.344679 AGAAGAGAAAGATGGAGATGCGAT 59.655 41.667 0.00 0.00 0.00 4.58
518 519 3.703556 AGAAGAGAAAGATGGAGATGCGA 59.296 43.478 0.00 0.00 0.00 5.10
519 520 4.050553 GAGAAGAGAAAGATGGAGATGCG 58.949 47.826 0.00 0.00 0.00 4.73
520 521 4.379652 GGAGAAGAGAAAGATGGAGATGC 58.620 47.826 0.00 0.00 0.00 3.91
522 523 4.629122 TGGGAGAAGAGAAAGATGGAGAT 58.371 43.478 0.00 0.00 0.00 2.75
523 524 4.066578 TGGGAGAAGAGAAAGATGGAGA 57.933 45.455 0.00 0.00 0.00 3.71
524 525 5.124645 CAATGGGAGAAGAGAAAGATGGAG 58.875 45.833 0.00 0.00 0.00 3.86
526 527 4.205587 CCAATGGGAGAAGAGAAAGATGG 58.794 47.826 0.00 0.00 35.59 3.51
527 528 3.631227 GCCAATGGGAGAAGAGAAAGATG 59.369 47.826 0.00 0.00 35.59 2.90
528 529 3.683847 CGCCAATGGGAGAAGAGAAAGAT 60.684 47.826 0.00 0.00 35.76 2.40
529 530 2.355108 CGCCAATGGGAGAAGAGAAAGA 60.355 50.000 0.00 0.00 35.76 2.52
530 531 2.012673 CGCCAATGGGAGAAGAGAAAG 58.987 52.381 0.00 0.00 35.76 2.62
531 532 1.351017 ACGCCAATGGGAGAAGAGAAA 59.649 47.619 0.00 0.00 37.43 2.52
532 533 0.984230 ACGCCAATGGGAGAAGAGAA 59.016 50.000 0.00 0.00 37.43 2.87
533 534 0.250234 CACGCCAATGGGAGAAGAGA 59.750 55.000 0.00 0.00 37.43 3.10
534 535 1.372087 GCACGCCAATGGGAGAAGAG 61.372 60.000 0.00 0.00 37.43 2.85
535 536 1.377202 GCACGCCAATGGGAGAAGA 60.377 57.895 0.00 0.00 37.43 2.87
536 537 1.243342 TTGCACGCCAATGGGAGAAG 61.243 55.000 0.00 0.00 37.43 2.85
537 538 1.228398 TTGCACGCCAATGGGAGAA 60.228 52.632 0.00 0.00 37.43 2.87
538 539 1.971167 GTTGCACGCCAATGGGAGA 60.971 57.895 0.00 0.00 37.43 3.71
539 540 0.676466 TAGTTGCACGCCAATGGGAG 60.676 55.000 0.00 0.00 40.27 4.30
540 541 0.676466 CTAGTTGCACGCCAATGGGA 60.676 55.000 0.00 0.00 35.55 4.37
541 542 1.802636 CTAGTTGCACGCCAATGGG 59.197 57.895 0.00 0.00 35.55 4.00
542 543 1.137404 GCTAGTTGCACGCCAATGG 59.863 57.895 0.00 0.00 42.31 3.16
543 544 4.771684 GCTAGTTGCACGCCAATG 57.228 55.556 0.00 0.00 42.31 2.82
593 598 2.195567 TGGTTGTTGCTGCTGGCTC 61.196 57.895 0.00 0.00 42.39 4.70
609 614 2.019984 GGCTATTCTTGGAGCTTGTGG 58.980 52.381 0.00 0.00 38.79 4.17
610 615 2.715046 TGGCTATTCTTGGAGCTTGTG 58.285 47.619 0.00 0.00 38.79 3.33
995 1014 3.192230 CGCGGCGCACCATCTTAA 61.192 61.111 32.61 0.00 34.57 1.85
1117 1136 1.228124 CCTTGGGCGTGAACTTGGA 60.228 57.895 0.00 0.00 0.00 3.53
1423 1442 2.049248 GACGTTAACGGCGGTGGA 60.049 61.111 29.81 0.00 44.95 4.02
1434 1453 0.896940 AGCCGTGGAGAAGGACGTTA 60.897 55.000 0.00 0.00 33.66 3.18
1596 1615 4.003788 ACCGTCAGGGCCGTCTTG 62.004 66.667 0.00 0.00 43.47 3.02
2003 2022 2.291508 CTTGCGGCCGTTGATGTACG 62.292 60.000 28.70 0.00 41.06 3.67
2109 2128 0.461163 TGATAATGTGGCCGTCGGTG 60.461 55.000 13.94 0.00 0.00 4.94
2376 2395 3.793144 GAGAAGCTGTTGCGCCGG 61.793 66.667 4.18 0.00 45.42 6.13
2431 2450 3.961414 GGACCCCTTGCCGTTGGA 61.961 66.667 0.00 0.00 0.00 3.53
2432 2451 3.801068 TTGGACCCCTTGCCGTTGG 62.801 63.158 0.00 0.00 0.00 3.77
2442 2461 3.081409 TAGCCGCTCTTGGACCCC 61.081 66.667 0.00 0.00 0.00 4.95
2443 2462 2.187163 GTAGCCGCTCTTGGACCC 59.813 66.667 0.00 0.00 0.00 4.46
2444 2463 1.448013 GTGTAGCCGCTCTTGGACC 60.448 63.158 0.00 0.00 0.00 4.46
2958 3512 1.106944 CCACCTTGGCCACGAACTTT 61.107 55.000 11.54 0.00 0.00 2.66
3609 4248 0.914551 CGCACGGATTGACGAACTAG 59.085 55.000 0.00 0.00 37.61 2.57
3645 4288 1.328279 ATGGATGCATGCATGGACTG 58.672 50.000 36.73 4.17 37.46 3.51
3677 4320 5.220710 AGTTATGATCGGATCCTTCCTTG 57.779 43.478 15.06 0.00 40.17 3.61
3711 4357 3.972950 ATACACTCTTCGATCGACCTG 57.027 47.619 19.26 12.60 0.00 4.00
3772 4418 7.760131 ATACATTTTGGAATTTTCTGCATCG 57.240 32.000 0.00 0.00 0.00 3.84
3897 4545 1.017387 GAGCTCTTTGTTATGCGGGG 58.983 55.000 6.43 0.00 0.00 5.73
3898 4546 0.652592 CGAGCTCTTTGTTATGCGGG 59.347 55.000 12.85 0.00 0.00 6.13
3932 4580 8.951243 GCTGGAAATCCTACTAATAATCCAATC 58.049 37.037 0.44 0.00 35.46 2.67
3933 4581 7.890655 GGCTGGAAATCCTACTAATAATCCAAT 59.109 37.037 0.44 0.00 35.46 3.16
3939 4587 7.446106 TTCTGGCTGGAAATCCTACTAATAA 57.554 36.000 0.44 0.00 36.82 1.40
3940 4588 7.446106 TTTCTGGCTGGAAATCCTACTAATA 57.554 36.000 0.44 0.00 36.82 0.98
3941 4589 5.975988 TTCTGGCTGGAAATCCTACTAAT 57.024 39.130 0.44 0.00 36.82 1.73
3942 4590 5.745227 CTTTCTGGCTGGAAATCCTACTAA 58.255 41.667 0.44 0.00 35.12 2.24
3943 4591 4.384208 GCTTTCTGGCTGGAAATCCTACTA 60.384 45.833 0.44 0.00 35.12 1.82
3944 4592 3.623453 GCTTTCTGGCTGGAAATCCTACT 60.623 47.826 0.44 0.00 35.12 2.57
3945 4593 2.685388 GCTTTCTGGCTGGAAATCCTAC 59.315 50.000 0.44 0.00 35.12 3.18
3958 4606 3.347077 ACAAGATCCTCAGCTTTCTGG 57.653 47.619 0.00 0.00 40.69 3.86
4008 4660 9.729281 ATTTTGTTCCATAGAAAATTCAGCAAT 57.271 25.926 0.00 0.00 36.59 3.56
4129 4785 5.467063 GGTAGCAATGCTAATGTTACCTCTC 59.533 44.000 17.34 0.00 45.70 3.20
4143 4799 2.551459 CCATAGCTCAAGGTAGCAATGC 59.449 50.000 0.00 0.00 45.30 3.56
4158 4814 8.345724 AGGAATCAATGTGATAATTCCATAGC 57.654 34.615 13.72 0.00 46.30 2.97
4179 4839 6.065374 TGTTTACCATCACTGCTTTTAGGAA 58.935 36.000 0.00 0.00 0.00 3.36
4188 4848 7.475771 TTTTGAATTTGTTTACCATCACTGC 57.524 32.000 0.00 0.00 0.00 4.40
4197 4857 6.142139 GGCCAGCAATTTTGAATTTGTTTAC 58.858 36.000 0.00 0.00 0.00 2.01
4286 4946 2.982488 AGAAATTGGAGGACTCACCACT 59.018 45.455 1.32 0.00 42.04 4.00
4338 5520 8.803397 ACTTTATTCAGGGTAGTAAAATGGAC 57.197 34.615 0.00 0.00 0.00 4.02
4340 5522 8.466798 CCAACTTTATTCAGGGTAGTAAAATGG 58.533 37.037 0.00 0.00 0.00 3.16
4345 5527 6.044637 ACCACCAACTTTATTCAGGGTAGTAA 59.955 38.462 0.00 0.00 0.00 2.24
4346 5528 5.548836 ACCACCAACTTTATTCAGGGTAGTA 59.451 40.000 0.00 0.00 0.00 1.82
4348 5530 4.918588 ACCACCAACTTTATTCAGGGTAG 58.081 43.478 0.00 0.00 0.00 3.18
4349 5531 5.163077 TGAACCACCAACTTTATTCAGGGTA 60.163 40.000 0.00 0.00 0.00 3.69
4350 5532 3.895704 ACCACCAACTTTATTCAGGGT 57.104 42.857 0.00 0.00 0.00 4.34
4351 5533 4.022329 GTGAACCACCAACTTTATTCAGGG 60.022 45.833 0.00 0.00 0.00 4.45
4352 5534 4.582656 TGTGAACCACCAACTTTATTCAGG 59.417 41.667 0.00 0.00 32.73 3.86
4353 5535 5.766150 TGTGAACCACCAACTTTATTCAG 57.234 39.130 0.00 0.00 32.73 3.02
4362 5544 1.890489 GGGGTATTGTGAACCACCAAC 59.110 52.381 0.00 0.00 38.87 3.77
4371 5553 6.590656 AAATTAGATGAGGGGGTATTGTGA 57.409 37.500 0.00 0.00 0.00 3.58
4372 5554 7.013655 CAGAAAATTAGATGAGGGGGTATTGTG 59.986 40.741 0.00 0.00 0.00 3.33
4373 5555 7.062957 CAGAAAATTAGATGAGGGGGTATTGT 58.937 38.462 0.00 0.00 0.00 2.71
4374 5556 7.062957 ACAGAAAATTAGATGAGGGGGTATTG 58.937 38.462 0.00 0.00 0.00 1.90
4375 5557 7.226059 ACAGAAAATTAGATGAGGGGGTATT 57.774 36.000 0.00 0.00 0.00 1.89
4376 5558 6.848562 ACAGAAAATTAGATGAGGGGGTAT 57.151 37.500 0.00 0.00 0.00 2.73
4377 5559 6.353602 GGAACAGAAAATTAGATGAGGGGGTA 60.354 42.308 0.00 0.00 0.00 3.69
4378 5560 5.510430 GAACAGAAAATTAGATGAGGGGGT 58.490 41.667 0.00 0.00 0.00 4.95
4379 5561 4.889995 GGAACAGAAAATTAGATGAGGGGG 59.110 45.833 0.00 0.00 0.00 5.40
4380 5562 5.760131 AGGAACAGAAAATTAGATGAGGGG 58.240 41.667 0.00 0.00 0.00 4.79
4381 5563 7.394359 TGAAAGGAACAGAAAATTAGATGAGGG 59.606 37.037 0.00 0.00 0.00 4.30
4384 5566 7.176690 GGGTGAAAGGAACAGAAAATTAGATGA 59.823 37.037 0.00 0.00 0.00 2.92
4385 5567 7.315890 GGGTGAAAGGAACAGAAAATTAGATG 58.684 38.462 0.00 0.00 0.00 2.90
4386 5568 6.437477 GGGGTGAAAGGAACAGAAAATTAGAT 59.563 38.462 0.00 0.00 0.00 1.98
4388 5570 5.047306 GGGGGTGAAAGGAACAGAAAATTAG 60.047 44.000 0.00 0.00 0.00 1.73
4389 5571 4.836175 GGGGGTGAAAGGAACAGAAAATTA 59.164 41.667 0.00 0.00 0.00 1.40
4390 5572 3.646162 GGGGGTGAAAGGAACAGAAAATT 59.354 43.478 0.00 0.00 0.00 1.82
4391 5573 3.116746 AGGGGGTGAAAGGAACAGAAAAT 60.117 43.478 0.00 0.00 0.00 1.82
4394 5576 1.529744 AGGGGGTGAAAGGAACAGAA 58.470 50.000 0.00 0.00 0.00 3.02
4396 5578 3.154710 GTTTAGGGGGTGAAAGGAACAG 58.845 50.000 0.00 0.00 0.00 3.16
4397 5579 2.514582 TGTTTAGGGGGTGAAAGGAACA 59.485 45.455 0.00 0.00 0.00 3.18
4398 5580 3.232720 TGTTTAGGGGGTGAAAGGAAC 57.767 47.619 0.00 0.00 0.00 3.62
4399 5581 3.962063 GTTTGTTTAGGGGGTGAAAGGAA 59.038 43.478 0.00 0.00 0.00 3.36
4400 5582 3.568443 GTTTGTTTAGGGGGTGAAAGGA 58.432 45.455 0.00 0.00 0.00 3.36
4402 5584 2.631062 GGGTTTGTTTAGGGGGTGAAAG 59.369 50.000 0.00 0.00 0.00 2.62
4403 5585 2.023307 TGGGTTTGTTTAGGGGGTGAAA 60.023 45.455 0.00 0.00 0.00 2.69
4404 5586 1.574339 TGGGTTTGTTTAGGGGGTGAA 59.426 47.619 0.00 0.00 0.00 3.18
4406 5588 2.319025 ATGGGTTTGTTTAGGGGGTG 57.681 50.000 0.00 0.00 0.00 4.61
4407 5589 2.043389 GGTATGGGTTTGTTTAGGGGGT 59.957 50.000 0.00 0.00 0.00 4.95
4408 5590 2.742348 GGTATGGGTTTGTTTAGGGGG 58.258 52.381 0.00 0.00 0.00 5.40
4409 5591 2.371306 CGGTATGGGTTTGTTTAGGGG 58.629 52.381 0.00 0.00 0.00 4.79
4410 5592 2.026075 TCCGGTATGGGTTTGTTTAGGG 60.026 50.000 0.00 0.00 38.76 3.53
4411 5593 3.353370 TCCGGTATGGGTTTGTTTAGG 57.647 47.619 0.00 0.00 38.76 2.69
4412 5594 4.519213 TCATCCGGTATGGGTTTGTTTAG 58.481 43.478 0.00 0.00 38.76 1.85
4413 5595 4.571369 TCATCCGGTATGGGTTTGTTTA 57.429 40.909 0.00 0.00 38.76 2.01
4414 5596 3.443145 TCATCCGGTATGGGTTTGTTT 57.557 42.857 0.00 0.00 38.76 2.83
4415 5597 3.443145 TTCATCCGGTATGGGTTTGTT 57.557 42.857 0.00 0.00 38.76 2.83
4416 5598 3.009695 TCTTTCATCCGGTATGGGTTTGT 59.990 43.478 0.00 0.00 38.76 2.83
4417 5599 3.616219 TCTTTCATCCGGTATGGGTTTG 58.384 45.455 0.00 0.00 38.76 2.93
4418 5600 4.014406 GTTCTTTCATCCGGTATGGGTTT 58.986 43.478 0.00 0.00 38.76 3.27
4419 5601 3.617284 GTTCTTTCATCCGGTATGGGTT 58.383 45.455 0.00 0.00 38.76 4.11
4420 5602 2.092592 GGTTCTTTCATCCGGTATGGGT 60.093 50.000 0.00 0.00 38.76 4.51
4421 5603 2.572290 GGTTCTTTCATCCGGTATGGG 58.428 52.381 0.00 0.00 38.76 4.00
4422 5604 2.572290 GGGTTCTTTCATCCGGTATGG 58.428 52.381 0.00 0.00 36.15 2.74
4423 5605 2.572290 GGGGTTCTTTCATCCGGTATG 58.428 52.381 0.00 4.35 36.88 2.39
4424 5606 1.493446 GGGGGTTCTTTCATCCGGTAT 59.507 52.381 0.00 0.00 0.00 2.73
4425 5607 0.913924 GGGGGTTCTTTCATCCGGTA 59.086 55.000 0.00 0.00 0.00 4.02
4426 5608 1.689412 GGGGGTTCTTTCATCCGGT 59.311 57.895 0.00 0.00 0.00 5.28
4427 5609 4.657952 GGGGGTTCTTTCATCCGG 57.342 61.111 0.00 0.00 0.00 5.14
4441 5623 3.015145 AGACAATCCACCCGGGGG 61.015 66.667 27.92 23.75 42.03 5.40
4442 5624 0.689745 TAGAGACAATCCACCCGGGG 60.690 60.000 27.92 12.73 37.22 5.73
4443 5625 0.464452 GTAGAGACAATCCACCCGGG 59.536 60.000 22.25 22.25 38.37 5.73
4444 5626 1.486211 AGTAGAGACAATCCACCCGG 58.514 55.000 0.00 0.00 0.00 5.73
4445 5627 2.893637 CAAGTAGAGACAATCCACCCG 58.106 52.381 0.00 0.00 0.00 5.28
4446 5628 2.237392 AGCAAGTAGAGACAATCCACCC 59.763 50.000 0.00 0.00 0.00 4.61
4447 5629 3.265791 CAGCAAGTAGAGACAATCCACC 58.734 50.000 0.00 0.00 0.00 4.61
4448 5630 2.675348 GCAGCAAGTAGAGACAATCCAC 59.325 50.000 0.00 0.00 0.00 4.02
4449 5631 2.568956 AGCAGCAAGTAGAGACAATCCA 59.431 45.455 0.00 0.00 0.00 3.41
4450 5632 2.935201 CAGCAGCAAGTAGAGACAATCC 59.065 50.000 0.00 0.00 0.00 3.01
4451 5633 3.854666 TCAGCAGCAAGTAGAGACAATC 58.145 45.455 0.00 0.00 0.00 2.67
4452 5634 3.969287 TCAGCAGCAAGTAGAGACAAT 57.031 42.857 0.00 0.00 0.00 2.71
4453 5635 3.007290 ACATCAGCAGCAAGTAGAGACAA 59.993 43.478 0.00 0.00 0.00 3.18
4454 5636 2.564504 ACATCAGCAGCAAGTAGAGACA 59.435 45.455 0.00 0.00 0.00 3.41
4455 5637 2.928757 CACATCAGCAGCAAGTAGAGAC 59.071 50.000 0.00 0.00 0.00 3.36
4456 5638 2.093816 CCACATCAGCAGCAAGTAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
4457 5639 2.277969 CCACATCAGCAGCAAGTAGAG 58.722 52.381 0.00 0.00 0.00 2.43
4458 5640 1.676916 GCCACATCAGCAGCAAGTAGA 60.677 52.381 0.00 0.00 0.00 2.59
4459 5641 0.731417 GCCACATCAGCAGCAAGTAG 59.269 55.000 0.00 0.00 0.00 2.57
4460 5642 0.036590 TGCCACATCAGCAGCAAGTA 59.963 50.000 0.00 0.00 34.69 2.24
4461 5643 0.611062 ATGCCACATCAGCAGCAAGT 60.611 50.000 0.00 0.00 44.90 3.16
4462 5644 0.530744 AATGCCACATCAGCAGCAAG 59.469 50.000 0.00 0.00 44.90 4.01
4463 5645 0.245266 CAATGCCACATCAGCAGCAA 59.755 50.000 0.00 0.00 44.90 3.91
4464 5646 1.600511 CCAATGCCACATCAGCAGCA 61.601 55.000 0.00 0.00 44.90 4.41
4465 5647 1.141019 CCAATGCCACATCAGCAGC 59.859 57.895 0.00 0.00 44.90 5.25
4466 5648 0.454600 GACCAATGCCACATCAGCAG 59.545 55.000 0.00 0.00 44.90 4.24
4467 5649 0.251253 TGACCAATGCCACATCAGCA 60.251 50.000 0.00 0.00 45.94 4.41
4468 5650 0.889994 TTGACCAATGCCACATCAGC 59.110 50.000 0.00 0.00 0.00 4.26
4469 5651 1.887854 TGTTGACCAATGCCACATCAG 59.112 47.619 0.00 0.00 0.00 2.90
4470 5652 1.887854 CTGTTGACCAATGCCACATCA 59.112 47.619 0.00 0.00 0.00 3.07
4471 5653 1.888512 ACTGTTGACCAATGCCACATC 59.111 47.619 0.00 0.00 0.00 3.06
4472 5654 1.614903 CACTGTTGACCAATGCCACAT 59.385 47.619 0.00 0.00 0.00 3.21
4473 5655 1.031235 CACTGTTGACCAATGCCACA 58.969 50.000 0.00 0.00 0.00 4.17
4474 5656 0.314935 CCACTGTTGACCAATGCCAC 59.685 55.000 0.00 0.00 0.00 5.01
4475 5657 0.106268 ACCACTGTTGACCAATGCCA 60.106 50.000 0.00 0.00 0.00 4.92
4476 5658 1.039856 AACCACTGTTGACCAATGCC 58.960 50.000 0.00 0.00 32.13 4.40
4477 5659 2.865551 CAAAACCACTGTTGACCAATGC 59.134 45.455 0.00 0.00 34.13 3.56
4478 5660 4.111916 GTCAAAACCACTGTTGACCAATG 58.888 43.478 5.43 0.00 45.13 2.82
4479 5661 4.385358 GTCAAAACCACTGTTGACCAAT 57.615 40.909 5.43 0.00 45.13 3.16
4480 5662 3.859411 GTCAAAACCACTGTTGACCAA 57.141 42.857 5.43 0.00 45.13 3.67
4517 5699 1.970114 CTCAGCCACACCTGCCAAG 60.970 63.158 0.00 0.00 32.87 3.61
4518 5700 1.782201 ATCTCAGCCACACCTGCCAA 61.782 55.000 0.00 0.00 32.87 4.52
4519 5701 2.226315 ATCTCAGCCACACCTGCCA 61.226 57.895 0.00 0.00 32.87 4.92
4520 5702 2.673523 ATCTCAGCCACACCTGCC 59.326 61.111 0.00 0.00 32.87 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.