Multiple sequence alignment - TraesCS7A01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G054300 chr7A 100.000 2480 0 0 1 2480 26304647 26302168 0.000000e+00 4580
1 TraesCS7A01G054300 chr7A 95.085 590 21 2 1 583 414197391 414197979 0.000000e+00 922
2 TraesCS7A01G054300 chr7A 94.781 594 22 3 1 586 117896177 117896769 0.000000e+00 917
3 TraesCS7A01G054300 chr7A 94.907 589 22 2 1 582 161772074 161771487 0.000000e+00 915
4 TraesCS7A01G054300 chr7A 94.737 589 23 2 1 582 49756576 49755989 0.000000e+00 909
5 TraesCS7A01G054300 chr7D 88.098 815 59 12 1687 2480 25352636 25351839 0.000000e+00 933
6 TraesCS7A01G054300 chr7D 85.698 895 79 18 583 1467 25353695 25352840 0.000000e+00 898
7 TraesCS7A01G054300 chr3A 95.278 593 19 3 1 585 50121257 50120666 0.000000e+00 931
8 TraesCS7A01G054300 chr5A 95.085 590 21 2 1 583 386238811 386238223 0.000000e+00 922
9 TraesCS7A01G054300 chr2A 94.915 590 22 2 1 583 327705520 327706108 0.000000e+00 917
10 TraesCS7A01G054300 chr2A 94.746 590 20 5 1 582 45860330 45859744 0.000000e+00 907
11 TraesCS7A01G054300 chr6A 94.764 592 23 2 1 585 270718650 270718060 0.000000e+00 915
12 TraesCS7A01G054300 chr4A 84.238 755 64 14 718 1460 709852259 709851548 0.000000e+00 684
13 TraesCS7A01G054300 chr4A 87.762 286 19 4 1707 1985 709850819 709850543 1.110000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G054300 chr7A 26302168 26304647 2479 True 4580.0 4580 100.000 1 2480 1 chr7A.!!$R1 2479
1 TraesCS7A01G054300 chr7A 414197391 414197979 588 False 922.0 922 95.085 1 583 1 chr7A.!!$F2 582
2 TraesCS7A01G054300 chr7A 117896177 117896769 592 False 917.0 917 94.781 1 586 1 chr7A.!!$F1 585
3 TraesCS7A01G054300 chr7A 161771487 161772074 587 True 915.0 915 94.907 1 582 1 chr7A.!!$R3 581
4 TraesCS7A01G054300 chr7A 49755989 49756576 587 True 909.0 909 94.737 1 582 1 chr7A.!!$R2 581
5 TraesCS7A01G054300 chr7D 25351839 25353695 1856 True 915.5 933 86.898 583 2480 2 chr7D.!!$R1 1897
6 TraesCS7A01G054300 chr3A 50120666 50121257 591 True 931.0 931 95.278 1 585 1 chr3A.!!$R1 584
7 TraesCS7A01G054300 chr5A 386238223 386238811 588 True 922.0 922 95.085 1 583 1 chr5A.!!$R1 582
8 TraesCS7A01G054300 chr2A 327705520 327706108 588 False 917.0 917 94.915 1 583 1 chr2A.!!$F1 582
9 TraesCS7A01G054300 chr2A 45859744 45860330 586 True 907.0 907 94.746 1 582 1 chr2A.!!$R1 581
10 TraesCS7A01G054300 chr6A 270718060 270718650 590 True 915.0 915 94.764 1 585 1 chr6A.!!$R1 584
11 TraesCS7A01G054300 chr4A 709850543 709852259 1716 True 502.0 684 86.000 718 1985 2 chr4A.!!$R1 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 862 0.163788 CGAAAGCGACTTGATGCGTT 59.836 50.0 0.0 0.0 40.82 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2754 0.03438 GCTTCACCCCCTACCCTTTC 60.034 60.0 0.0 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.523438 TCCCAAAAATCAGTAACGCTTTT 57.477 34.783 0.00 0.00 0.00 2.27
227 235 5.311265 AGTTCAATGAAGATCAAGTGCTCA 58.689 37.500 0.00 0.00 0.00 4.26
432 440 4.465886 AGGCAATACCGTGGCAAATATAA 58.534 39.130 0.00 0.00 46.15 0.98
493 501 4.075682 AGATATTAGTAGCGCTGCTCTCA 58.924 43.478 31.69 16.96 40.44 3.27
571 580 8.540388 TGCTAAGATTCTGTGTATAAGGTTCTT 58.460 33.333 0.00 0.00 0.00 2.52
593 602 7.055378 TCTTCCTAGTAGTGTTAGGCTCTAAG 58.945 42.308 0.00 0.00 38.05 2.18
603 612 7.676947 AGTGTTAGGCTCTAAGTGTATTTTCA 58.323 34.615 0.00 0.00 0.00 2.69
604 613 7.819900 AGTGTTAGGCTCTAAGTGTATTTTCAG 59.180 37.037 0.00 0.00 0.00 3.02
611 620 7.138736 GCTCTAAGTGTATTTTCAGTGCAAAA 58.861 34.615 0.00 0.00 0.00 2.44
612 621 7.324616 GCTCTAAGTGTATTTTCAGTGCAAAAG 59.675 37.037 0.00 0.00 0.00 2.27
613 622 7.648142 TCTAAGTGTATTTTCAGTGCAAAAGG 58.352 34.615 0.00 0.00 0.00 3.11
614 623 5.852282 AGTGTATTTTCAGTGCAAAAGGT 57.148 34.783 0.00 0.00 0.00 3.50
615 624 5.591099 AGTGTATTTTCAGTGCAAAAGGTG 58.409 37.500 0.00 0.00 0.00 4.00
616 625 4.744631 GTGTATTTTCAGTGCAAAAGGTGG 59.255 41.667 0.00 0.00 0.00 4.61
617 626 4.404073 TGTATTTTCAGTGCAAAAGGTGGT 59.596 37.500 0.00 0.00 0.00 4.16
618 627 3.518634 TTTTCAGTGCAAAAGGTGGTC 57.481 42.857 0.00 0.00 0.00 4.02
619 628 1.398692 TTCAGTGCAAAAGGTGGTCC 58.601 50.000 0.00 0.00 0.00 4.46
621 630 0.954452 CAGTGCAAAAGGTGGTCCTC 59.046 55.000 0.00 0.00 44.35 3.71
622 631 0.535102 AGTGCAAAAGGTGGTCCTCG 60.535 55.000 0.00 0.00 44.35 4.63
624 633 0.181587 TGCAAAAGGTGGTCCTCGAA 59.818 50.000 0.00 0.00 44.35 3.71
625 634 1.314730 GCAAAAGGTGGTCCTCGAAA 58.685 50.000 0.00 0.00 44.35 3.46
626 635 1.266989 GCAAAAGGTGGTCCTCGAAAG 59.733 52.381 0.00 0.00 44.35 2.62
627 636 1.266989 CAAAAGGTGGTCCTCGAAAGC 59.733 52.381 0.00 0.00 44.35 3.51
628 637 0.602905 AAAGGTGGTCCTCGAAAGCG 60.603 55.000 0.00 0.00 44.35 4.68
641 650 2.035449 TCGAAAGCGAGGTTTTGAGAGA 59.965 45.455 12.19 1.89 42.51 3.10
643 652 3.394719 GAAAGCGAGGTTTTGAGAGACT 58.605 45.455 1.69 0.00 0.00 3.24
644 653 2.447244 AGCGAGGTTTTGAGAGACTG 57.553 50.000 0.00 0.00 0.00 3.51
646 655 2.062519 GCGAGGTTTTGAGAGACTGTC 58.937 52.381 0.00 0.00 0.00 3.51
649 658 3.310246 GAGGTTTTGAGAGACTGTCGAC 58.690 50.000 9.11 9.11 0.00 4.20
650 659 2.693591 AGGTTTTGAGAGACTGTCGACA 59.306 45.455 18.88 18.88 0.00 4.35
657 666 7.962964 TTTGAGAGACTGTCGACAAATTAAT 57.037 32.000 20.49 4.14 34.14 1.40
666 675 6.092259 ACTGTCGACAAATTAATCAAGTAGGC 59.908 38.462 20.49 0.00 0.00 3.93
667 676 5.353123 TGTCGACAAATTAATCAAGTAGGCC 59.647 40.000 17.62 0.00 0.00 5.19
668 677 5.353123 GTCGACAAATTAATCAAGTAGGCCA 59.647 40.000 11.55 0.00 0.00 5.36
680 689 1.482593 AGTAGGCCATGTTCTTCTCCG 59.517 52.381 5.01 0.00 0.00 4.63
706 715 4.147321 AGATTCAAGCCAAGCAGAAAGAA 58.853 39.130 0.00 0.00 31.18 2.52
738 755 2.093869 TGCCCGGTCAAGATAAGTACAC 60.094 50.000 0.00 0.00 0.00 2.90
745 762 6.016527 CCGGTCAAGATAAGTACACTGCTATA 60.017 42.308 0.00 0.00 0.00 1.31
821 838 2.524569 TCTTCATGCACGTCAACTGA 57.475 45.000 0.00 0.00 0.00 3.41
823 840 2.738314 TCTTCATGCACGTCAACTGATG 59.262 45.455 0.00 0.00 37.11 3.07
824 841 0.798159 TCATGCACGTCAACTGATGC 59.202 50.000 0.00 0.00 38.59 3.91
825 842 4.453093 TGCACGTCAACTGATGCA 57.547 50.000 4.29 4.29 45.45 3.96
826 843 1.941072 TGCACGTCAACTGATGCAC 59.059 52.632 4.29 0.00 42.92 4.57
827 844 1.154599 GCACGTCAACTGATGCACG 60.155 57.895 0.00 7.80 38.00 5.34
828 845 1.556591 GCACGTCAACTGATGCACGA 61.557 55.000 13.48 0.00 38.00 4.35
830 847 1.260297 CACGTCAACTGATGCACGAAA 59.740 47.619 13.48 0.00 36.62 3.46
832 849 1.722751 CGTCAACTGATGCACGAAAGC 60.723 52.381 0.00 0.00 35.78 3.51
833 850 0.512518 TCAACTGATGCACGAAAGCG 59.487 50.000 0.00 0.00 44.79 4.68
834 851 0.512518 CAACTGATGCACGAAAGCGA 59.487 50.000 0.00 0.00 41.64 4.93
835 852 0.512952 AACTGATGCACGAAAGCGAC 59.487 50.000 0.00 0.00 41.64 5.19
836 853 0.319900 ACTGATGCACGAAAGCGACT 60.320 50.000 0.00 0.00 41.64 4.18
837 854 0.792640 CTGATGCACGAAAGCGACTT 59.207 50.000 0.00 0.00 41.64 3.01
838 855 0.512518 TGATGCACGAAAGCGACTTG 59.487 50.000 0.00 0.00 41.64 3.16
839 856 0.790207 GATGCACGAAAGCGACTTGA 59.210 50.000 0.00 0.00 41.64 3.02
840 857 1.394917 GATGCACGAAAGCGACTTGAT 59.605 47.619 0.00 0.00 41.64 2.57
841 858 0.512518 TGCACGAAAGCGACTTGATG 59.487 50.000 0.00 0.00 41.64 3.07
842 859 0.790866 GCACGAAAGCGACTTGATGC 60.791 55.000 0.00 0.00 41.64 3.91
843 860 0.517132 CACGAAAGCGACTTGATGCG 60.517 55.000 0.00 0.00 41.64 4.73
844 861 0.944311 ACGAAAGCGACTTGATGCGT 60.944 50.000 0.00 0.00 41.64 5.24
845 862 0.163788 CGAAAGCGACTTGATGCGTT 59.836 50.000 0.00 0.00 40.82 4.84
846 863 1.595609 GAAAGCGACTTGATGCGTTG 58.404 50.000 0.00 0.00 33.01 4.10
847 864 0.944386 AAAGCGACTTGATGCGTTGT 59.056 45.000 0.00 0.00 35.87 3.32
848 865 0.944386 AAGCGACTTGATGCGTTGTT 59.056 45.000 0.00 0.00 35.87 2.83
849 866 0.944386 AGCGACTTGATGCGTTGTTT 59.056 45.000 0.00 0.00 35.87 2.83
850 867 1.333619 AGCGACTTGATGCGTTGTTTT 59.666 42.857 0.00 0.00 35.87 2.43
851 868 2.116366 GCGACTTGATGCGTTGTTTTT 58.884 42.857 0.00 0.00 0.00 1.94
852 869 2.097925 GCGACTTGATGCGTTGTTTTTG 60.098 45.455 0.00 0.00 0.00 2.44
853 870 3.105203 CGACTTGATGCGTTGTTTTTGT 58.895 40.909 0.00 0.00 0.00 2.83
854 871 4.275662 CGACTTGATGCGTTGTTTTTGTA 58.724 39.130 0.00 0.00 0.00 2.41
857 874 5.587289 ACTTGATGCGTTGTTTTTGTACAT 58.413 33.333 0.00 0.00 0.00 2.29
860 877 5.767269 TGATGCGTTGTTTTTGTACATGAT 58.233 33.333 0.00 0.00 0.00 2.45
900 950 2.236146 TGTCTGGGTGTGCCTATAAGTG 59.764 50.000 0.00 0.00 34.45 3.16
961 1011 1.405821 CCGGCTAAGTCGATCTTCACT 59.594 52.381 0.00 0.00 37.56 3.41
962 1012 2.159226 CCGGCTAAGTCGATCTTCACTT 60.159 50.000 0.00 6.75 37.56 3.16
964 1014 3.548268 CGGCTAAGTCGATCTTCACTTTC 59.452 47.826 6.83 1.85 37.56 2.62
965 1015 3.548268 GGCTAAGTCGATCTTCACTTTCG 59.452 47.826 6.83 0.00 37.56 3.46
985 1036 1.889891 CAGTTTTTCGTGTGTGCGTT 58.110 45.000 0.00 0.00 0.00 4.84
1167 1218 0.930310 CGACATCATTACCACCAGCG 59.070 55.000 0.00 0.00 0.00 5.18
1168 1219 0.657840 GACATCATTACCACCAGCGC 59.342 55.000 0.00 0.00 0.00 5.92
1169 1220 0.748005 ACATCATTACCACCAGCGCC 60.748 55.000 2.29 0.00 0.00 6.53
1170 1221 1.523711 ATCATTACCACCAGCGCCG 60.524 57.895 2.29 0.00 0.00 6.46
1171 1222 2.940890 ATCATTACCACCAGCGCCGG 62.941 60.000 8.48 8.48 0.00 6.13
1200 1257 2.263540 GCACCGGTGGTATCGTGT 59.736 61.111 34.58 0.00 32.11 4.49
1230 1287 0.867753 CTCAATCGTTCGGGAGCTCG 60.868 60.000 7.83 0.00 0.00 5.03
1232 1289 0.249073 CAATCGTTCGGGAGCTCGAT 60.249 55.000 7.83 3.63 43.04 3.59
1257 1314 0.745845 GATCGTTGTGCATGGCCTCT 60.746 55.000 3.32 0.00 0.00 3.69
1259 1316 1.968017 CGTTGTGCATGGCCTCTGT 60.968 57.895 3.32 0.00 0.00 3.41
1278 1335 1.880027 GTCAACGAGAAATGCCCTTGT 59.120 47.619 0.00 0.00 0.00 3.16
1281 1338 1.813513 ACGAGAAATGCCCTTGTCTG 58.186 50.000 0.00 0.00 0.00 3.51
1400 1457 2.560504 CGATGCCACTTGTGCCTTATA 58.439 47.619 0.00 0.00 0.00 0.98
1404 1461 3.696045 TGCCACTTGTGCCTTATATGTT 58.304 40.909 0.00 0.00 0.00 2.71
1483 2117 3.497031 GCAACGGGCCGTAGCTTC 61.497 66.667 34.37 15.40 39.99 3.86
1485 2119 1.375523 CAACGGGCCGTAGCTTCTT 60.376 57.895 34.37 12.35 39.99 2.52
1497 2131 2.584608 CTTCTTCCGGTCGGCCAT 59.415 61.111 6.96 0.00 34.68 4.40
1514 2167 1.404035 CCATGCATGGTCAGATGTGTG 59.596 52.381 33.68 7.13 43.05 3.82
1518 2171 1.339438 GCATGGTCAGATGTGTGTCCT 60.339 52.381 0.00 0.00 0.00 3.85
1540 2197 5.009010 CCTTGTATGAACTACCATGGAATGC 59.991 44.000 21.47 1.91 44.97 3.56
1554 2211 5.452216 CCATGGAATGCTTAATGCTTAGCAA 60.452 40.000 12.08 0.00 44.97 3.91
1556 2213 5.593968 TGGAATGCTTAATGCTTAGCAATG 58.406 37.500 12.08 2.98 43.62 2.82
1557 2214 4.986659 GGAATGCTTAATGCTTAGCAATGG 59.013 41.667 12.08 1.93 43.62 3.16
1578 2235 8.607459 CAATGGACTGCTCACTAAGTATTTAAG 58.393 37.037 0.00 0.00 0.00 1.85
1599 2256 6.371809 AAGTTTGAATAAGTTCGCAGTTGA 57.628 33.333 0.00 0.00 37.15 3.18
1600 2257 6.371809 AGTTTGAATAAGTTCGCAGTTGAA 57.628 33.333 0.00 0.00 37.15 2.69
1601 2258 6.791303 AGTTTGAATAAGTTCGCAGTTGAAA 58.209 32.000 0.00 0.00 37.15 2.69
1604 2261 8.627428 GTTTGAATAAGTTCGCAGTTGAAATAC 58.373 33.333 0.00 0.00 37.15 1.89
1608 2265 9.474249 GAATAAGTTCGCAGTTGAAATACTAAC 57.526 33.333 0.00 0.00 0.00 2.34
1632 2289 8.560576 ACAATTCTTGACTTAATGAAAACACG 57.439 30.769 0.00 0.00 0.00 4.49
1633 2290 7.167468 ACAATTCTTGACTTAATGAAAACACGC 59.833 33.333 0.00 0.00 0.00 5.34
1634 2291 6.371809 TTCTTGACTTAATGAAAACACGCT 57.628 33.333 0.00 0.00 0.00 5.07
1635 2292 7.485418 TTCTTGACTTAATGAAAACACGCTA 57.515 32.000 0.00 0.00 0.00 4.26
1636 2293 6.884187 TCTTGACTTAATGAAAACACGCTAC 58.116 36.000 0.00 0.00 0.00 3.58
1637 2294 6.704493 TCTTGACTTAATGAAAACACGCTACT 59.296 34.615 0.00 0.00 0.00 2.57
1638 2295 6.223138 TGACTTAATGAAAACACGCTACTG 57.777 37.500 0.00 0.00 0.00 2.74
1639 2296 5.030874 ACTTAATGAAAACACGCTACTGC 57.969 39.130 0.00 0.00 0.00 4.40
1640 2297 4.513692 ACTTAATGAAAACACGCTACTGCA 59.486 37.500 0.00 0.00 39.64 4.41
1641 2298 3.980646 AATGAAAACACGCTACTGCAA 57.019 38.095 0.00 0.00 39.64 4.08
1642 2299 3.980646 ATGAAAACACGCTACTGCAAA 57.019 38.095 0.00 0.00 39.64 3.68
1643 2300 3.766676 TGAAAACACGCTACTGCAAAA 57.233 38.095 0.00 0.00 39.64 2.44
1644 2301 4.098055 TGAAAACACGCTACTGCAAAAA 57.902 36.364 0.00 0.00 39.64 1.94
1665 2322 6.903883 AAAATGATACTGTAACTAGTGGCG 57.096 37.500 0.00 0.00 32.19 5.69
1666 2323 5.593679 AATGATACTGTAACTAGTGGCGT 57.406 39.130 0.00 0.00 32.19 5.68
1667 2324 4.365899 TGATACTGTAACTAGTGGCGTG 57.634 45.455 0.00 0.00 32.19 5.34
1668 2325 3.760151 TGATACTGTAACTAGTGGCGTGT 59.240 43.478 0.00 0.00 32.19 4.49
1669 2326 2.433868 ACTGTAACTAGTGGCGTGTG 57.566 50.000 0.00 0.00 0.00 3.82
1670 2327 1.068474 CTGTAACTAGTGGCGTGTGC 58.932 55.000 0.00 0.00 41.71 4.57
1671 2328 0.389757 TGTAACTAGTGGCGTGTGCA 59.610 50.000 0.00 0.00 45.35 4.57
1672 2329 1.202545 TGTAACTAGTGGCGTGTGCAA 60.203 47.619 0.00 0.00 45.35 4.08
1673 2330 1.868498 GTAACTAGTGGCGTGTGCAAA 59.132 47.619 0.00 0.00 45.35 3.68
1674 2331 1.384525 AACTAGTGGCGTGTGCAAAA 58.615 45.000 0.00 0.00 45.35 2.44
1675 2332 1.384525 ACTAGTGGCGTGTGCAAAAA 58.615 45.000 0.00 0.00 45.35 1.94
1697 2354 5.636903 AAGCCTATCACTGATAACCACAT 57.363 39.130 0.42 0.00 0.00 3.21
1710 2367 5.751509 TGATAACCACATGTACTAATGACGC 59.248 40.000 0.00 0.00 0.00 5.19
1812 2476 9.683069 ATGATCTTTTACACAAATGTCTTTCAC 57.317 29.630 0.00 0.00 40.48 3.18
1839 2503 4.579454 AATGATGGCAGCACATGAATAC 57.421 40.909 7.97 0.00 0.00 1.89
1845 2509 3.254411 TGGCAGCACATGAATACGAAAAA 59.746 39.130 0.00 0.00 0.00 1.94
1873 2537 4.121669 GCTGGCTGCTCTCGTCGA 62.122 66.667 9.31 0.00 38.95 4.20
1874 2538 2.202544 CTGGCTGCTCTCGTCGAC 60.203 66.667 5.18 5.18 0.00 4.20
1875 2539 2.673341 TGGCTGCTCTCGTCGACT 60.673 61.111 14.70 0.00 0.00 4.18
1876 2540 2.101380 GGCTGCTCTCGTCGACTC 59.899 66.667 14.70 0.00 0.00 3.36
1877 2541 2.276994 GCTGCTCTCGTCGACTCG 60.277 66.667 14.70 0.84 0.00 4.18
1878 2542 3.029564 GCTGCTCTCGTCGACTCGT 62.030 63.158 14.70 0.00 0.00 4.18
1879 2543 1.059681 CTGCTCTCGTCGACTCGTC 59.940 63.158 14.70 0.00 0.00 4.20
1919 2583 1.161843 GGTGGTGTACCGTTTGATGG 58.838 55.000 0.00 0.00 40.26 3.51
1977 2641 2.103143 CCGCGTGCTCTCGATTCT 59.897 61.111 4.92 0.00 0.00 2.40
1998 2662 0.179032 AACGGTGACATTGCTGACCA 60.179 50.000 0.00 0.00 0.00 4.02
2018 2682 6.267099 GACCAGAGTCACATGGATTTCCAAA 61.267 44.000 2.89 0.00 45.35 3.28
2019 2683 8.225979 GACCAGAGTCACATGGATTTCCAAAC 62.226 46.154 2.89 0.79 45.35 2.93
2032 2705 0.038166 TCCAAACACTGCCAGATCCC 59.962 55.000 0.00 0.00 0.00 3.85
2084 2757 3.425122 GGGAACGGGAAGTTGGAAA 57.575 52.632 0.00 0.00 44.35 3.13
2085 2758 1.244816 GGGAACGGGAAGTTGGAAAG 58.755 55.000 0.00 0.00 44.35 2.62
2092 2765 1.005569 GGGAAGTTGGAAAGGGTAGGG 59.994 57.143 0.00 0.00 0.00 3.53
2105 2778 1.571773 GGTAGGGGGTGAAGCCATGT 61.572 60.000 0.27 0.00 39.65 3.21
2114 2787 1.470098 GTGAAGCCATGTCATGTGTCC 59.530 52.381 11.84 0.00 0.00 4.02
2118 2791 2.114670 CCATGTCATGTGTCCGGGC 61.115 63.158 11.84 0.00 0.00 6.13
2146 2819 4.424566 GCGACGCCAACGACCCTA 62.425 66.667 9.14 0.00 43.93 3.53
2169 2842 3.414700 CTCCTCCAACGCGTGTGC 61.415 66.667 14.98 0.00 37.91 4.57
2196 2869 1.846124 ATCCACAACCACCCTCCGT 60.846 57.895 0.00 0.00 0.00 4.69
2210 2883 1.077285 TCCGTATGGTCGAGCTCCA 60.077 57.895 16.64 5.88 39.41 3.86
2212 2885 1.202842 TCCGTATGGTCGAGCTCCATA 60.203 52.381 16.64 12.23 42.96 2.74
2243 2916 4.527157 GCGCGACCAAGCTCATGC 62.527 66.667 12.10 0.00 40.05 4.06
2302 2979 1.078823 AGGGAATTGGGGGAAGGTTTC 59.921 52.381 0.00 0.00 0.00 2.78
2306 2983 0.251608 ATTGGGGGAAGGTTTCGGTG 60.252 55.000 0.00 0.00 0.00 4.94
2315 2992 1.057851 AGGTTTCGGTGAGTGGGGAA 61.058 55.000 0.00 0.00 0.00 3.97
2401 3082 1.669440 GTGTAGGCGACTGGACCAA 59.331 57.895 0.00 0.00 43.88 3.67
2402 3083 0.249398 GTGTAGGCGACTGGACCAAT 59.751 55.000 0.00 0.00 43.88 3.16
2405 3086 2.252072 TAGGCGACTGGACCAATGGC 62.252 60.000 0.00 0.73 43.88 4.40
2407 3088 1.971167 GCGACTGGACCAATGGCAA 60.971 57.895 4.95 0.00 0.00 4.52
2408 3089 1.875963 CGACTGGACCAATGGCAAC 59.124 57.895 0.00 0.00 0.00 4.17
2423 3104 2.766970 GCAACGTGCAGGAGTAAAAA 57.233 45.000 14.38 0.00 44.26 1.94
2460 3145 0.464554 GATTGGAGCCGGGAGAAAGG 60.465 60.000 2.18 0.00 0.00 3.11
2463 3148 1.131303 TGGAGCCGGGAGAAAGGAAA 61.131 55.000 2.18 0.00 0.00 3.13
2476 3161 5.828328 GGAGAAAGGAAAAGAGGAACAAAGA 59.172 40.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.546428 ACTGATTTTTGGGATAAACAAAAGAAG 57.454 29.630 0.00 0.00 45.29 2.85
32 33 6.385649 TTTTCAGGAAAAAGCGTTACTGAT 57.614 33.333 11.93 0.00 37.35 2.90
416 424 6.094719 CGCTACTATTATATTTGCCACGGTA 58.905 40.000 0.00 0.00 0.00 4.02
432 440 0.174845 TGCGGAACAAGCGCTACTAT 59.825 50.000 12.05 0.00 37.44 2.12
571 580 6.120905 CACTTAGAGCCTAACACTACTAGGA 58.879 44.000 0.00 0.00 38.63 2.94
585 594 4.695455 TGCACTGAAAATACACTTAGAGCC 59.305 41.667 0.00 0.00 0.00 4.70
593 602 4.744631 CCACCTTTTGCACTGAAAATACAC 59.255 41.667 0.00 0.00 0.00 2.90
612 621 2.654877 TCGCTTTCGAGGACCACC 59.345 61.111 0.00 0.00 40.21 4.61
620 629 2.035449 TCTCTCAAAACCTCGCTTTCGA 59.965 45.455 0.00 0.00 43.28 3.71
621 630 2.155924 GTCTCTCAAAACCTCGCTTTCG 59.844 50.000 0.00 0.00 0.00 3.46
622 631 3.185391 CAGTCTCTCAAAACCTCGCTTTC 59.815 47.826 0.00 0.00 0.00 2.62
624 633 2.103263 ACAGTCTCTCAAAACCTCGCTT 59.897 45.455 0.00 0.00 0.00 4.68
625 634 1.689273 ACAGTCTCTCAAAACCTCGCT 59.311 47.619 0.00 0.00 0.00 4.93
626 635 2.062519 GACAGTCTCTCAAAACCTCGC 58.937 52.381 0.00 0.00 0.00 5.03
627 636 2.031069 TCGACAGTCTCTCAAAACCTCG 60.031 50.000 0.00 0.00 0.00 4.63
628 637 3.243434 TGTCGACAGTCTCTCAAAACCTC 60.243 47.826 15.76 0.00 0.00 3.85
637 646 7.155328 ACTTGATTAATTTGTCGACAGTCTCT 58.845 34.615 19.11 5.73 0.00 3.10
641 650 6.092259 GCCTACTTGATTAATTTGTCGACAGT 59.908 38.462 19.11 11.23 0.00 3.55
643 652 5.353123 GGCCTACTTGATTAATTTGTCGACA 59.647 40.000 15.76 15.76 0.00 4.35
644 653 5.353123 TGGCCTACTTGATTAATTTGTCGAC 59.647 40.000 9.11 9.11 0.00 4.20
646 655 5.811399 TGGCCTACTTGATTAATTTGTCG 57.189 39.130 3.32 0.00 0.00 4.35
649 658 7.775120 AGAACATGGCCTACTTGATTAATTTG 58.225 34.615 3.32 0.00 0.00 2.32
650 659 7.961326 AGAACATGGCCTACTTGATTAATTT 57.039 32.000 3.32 0.00 0.00 1.82
657 666 3.055094 GGAGAAGAACATGGCCTACTTGA 60.055 47.826 3.32 0.00 0.00 3.02
666 675 1.550524 TCTCCACGGAGAAGAACATGG 59.449 52.381 13.49 0.00 46.89 3.66
680 689 1.471684 CTGCTTGGCTTGAATCTCCAC 59.528 52.381 0.00 0.00 0.00 4.02
691 700 3.220674 AGACTTTCTTTCTGCTTGGCT 57.779 42.857 0.00 0.00 0.00 4.75
706 715 1.972660 GACCGGGCAGGCATAGACTT 61.973 60.000 0.00 0.00 46.52 3.01
770 787 1.747145 CATCTGGAGATCTGCGCCT 59.253 57.895 9.88 0.00 37.36 5.52
783 800 4.675190 AGAACGAATCAAGTTGCATCTG 57.325 40.909 0.00 0.00 31.14 2.90
821 838 1.129251 CATCAAGTCGCTTTCGTGCAT 59.871 47.619 0.00 0.00 36.96 3.96
823 840 0.790866 GCATCAAGTCGCTTTCGTGC 60.791 55.000 0.00 0.00 36.96 5.34
824 841 0.517132 CGCATCAAGTCGCTTTCGTG 60.517 55.000 0.00 0.00 36.96 4.35
825 842 0.944311 ACGCATCAAGTCGCTTTCGT 60.944 50.000 0.00 0.00 36.96 3.85
826 843 0.163788 AACGCATCAAGTCGCTTTCG 59.836 50.000 0.00 0.00 0.00 3.46
827 844 1.069906 ACAACGCATCAAGTCGCTTTC 60.070 47.619 0.00 0.00 0.00 2.62
828 845 0.944386 ACAACGCATCAAGTCGCTTT 59.056 45.000 0.00 0.00 0.00 3.51
830 847 0.944386 AAACAACGCATCAAGTCGCT 59.056 45.000 0.00 0.00 0.00 4.93
832 849 3.105203 ACAAAAACAACGCATCAAGTCG 58.895 40.909 0.00 0.00 0.00 4.18
833 850 5.031578 TGTACAAAAACAACGCATCAAGTC 58.968 37.500 0.00 0.00 0.00 3.01
834 851 4.987832 TGTACAAAAACAACGCATCAAGT 58.012 34.783 0.00 0.00 0.00 3.16
835 852 5.685068 TCATGTACAAAAACAACGCATCAAG 59.315 36.000 0.00 0.00 32.02 3.02
836 853 5.582550 TCATGTACAAAAACAACGCATCAA 58.417 33.333 0.00 0.00 32.02 2.57
837 854 5.175090 TCATGTACAAAAACAACGCATCA 57.825 34.783 0.00 0.00 32.02 3.07
838 855 7.910162 AGATATCATGTACAAAAACAACGCATC 59.090 33.333 5.32 0.00 32.02 3.91
839 856 7.761409 AGATATCATGTACAAAAACAACGCAT 58.239 30.769 5.32 0.00 32.02 4.73
840 857 7.139896 AGATATCATGTACAAAAACAACGCA 57.860 32.000 5.32 0.00 32.02 5.24
841 858 7.373441 GCTAGATATCATGTACAAAAACAACGC 59.627 37.037 5.32 0.00 32.02 4.84
842 859 8.604035 AGCTAGATATCATGTACAAAAACAACG 58.396 33.333 5.32 0.00 32.02 4.10
857 874 9.746457 AGACATCATACTTGTAGCTAGATATCA 57.254 33.333 5.32 0.00 0.00 2.15
860 877 7.394641 CCCAGACATCATACTTGTAGCTAGATA 59.605 40.741 0.00 0.00 0.00 1.98
880 923 2.500098 TCACTTATAGGCACACCCAGAC 59.500 50.000 0.00 0.00 36.11 3.51
900 950 3.847081 ACTAGTAGGGGAAGGCATAGTC 58.153 50.000 1.45 0.00 0.00 2.59
961 1011 2.510874 CACACACGAAAAACTGCGAAA 58.489 42.857 0.00 0.00 0.00 3.46
962 1012 1.792273 GCACACACGAAAAACTGCGAA 60.792 47.619 0.00 0.00 0.00 4.70
964 1014 1.520133 CGCACACACGAAAAACTGCG 61.520 55.000 0.00 0.00 41.21 5.18
965 1015 0.522495 ACGCACACACGAAAAACTGC 60.522 50.000 0.00 0.00 36.70 4.40
985 1036 6.150140 GCTGAAGCCATTAGAGAAGAAGAAAA 59.850 38.462 0.00 0.00 34.31 2.29
1050 1101 4.807631 AGCATGGCGAGCATGGCA 62.808 61.111 6.91 6.91 43.90 4.92
1190 1241 2.285069 AGGCCCCACACGATACCA 60.285 61.111 0.00 0.00 0.00 3.25
1200 1257 2.356278 GATTGAGCACAGGCCCCA 59.644 61.111 0.00 0.00 42.56 4.96
1230 1287 1.362768 TGCACAACGATCTGCAGATC 58.637 50.000 36.66 36.66 45.60 2.75
1232 1289 1.081094 CATGCACAACGATCTGCAGA 58.919 50.000 20.79 20.79 46.26 4.26
1257 1314 1.879380 CAAGGGCATTTCTCGTTGACA 59.121 47.619 0.00 0.00 32.48 3.58
1259 1316 2.151202 GACAAGGGCATTTCTCGTTGA 58.849 47.619 0.00 0.00 34.21 3.18
1278 1335 1.301716 GCGAGGTTGAACCAGCAGA 60.302 57.895 23.43 0.00 41.95 4.26
1281 1338 2.032681 AGGCGAGGTTGAACCAGC 59.967 61.111 21.28 21.28 41.95 4.85
1324 1381 2.026014 GTTGGCCGTGCACTTGTG 59.974 61.111 16.19 0.00 0.00 3.33
1327 1384 3.595758 GCAGTTGGCCGTGCACTT 61.596 61.111 16.19 0.00 39.62 3.16
1400 1457 5.071250 TCCGGGCACTCTATACATTTAACAT 59.929 40.000 0.00 0.00 0.00 2.71
1404 1461 5.617528 TTTCCGGGCACTCTATACATTTA 57.382 39.130 0.00 0.00 0.00 1.40
1470 2096 2.202892 GGAAGAAGCTACGGCCCG 60.203 66.667 0.00 0.00 39.73 6.13
1483 2117 4.776322 TGCATGGCCGACCGGAAG 62.776 66.667 9.46 0.06 39.70 3.46
1485 2119 4.854924 CATGCATGGCCGACCGGA 62.855 66.667 19.40 0.00 39.70 5.14
1497 2131 1.611410 GGACACACATCTGACCATGCA 60.611 52.381 0.00 0.00 0.00 3.96
1507 2160 5.581085 GGTAGTTCATACAAGGACACACATC 59.419 44.000 0.00 0.00 35.96 3.06
1514 2167 5.353394 TCCATGGTAGTTCATACAAGGAC 57.647 43.478 12.58 0.00 35.96 3.85
1518 2171 5.754782 AGCATTCCATGGTAGTTCATACAA 58.245 37.500 12.58 0.00 39.58 2.41
1540 2197 4.604976 GCAGTCCATTGCTAAGCATTAAG 58.395 43.478 0.00 0.00 38.76 1.85
1554 2211 7.852263 ACTTAAATACTTAGTGAGCAGTCCAT 58.148 34.615 0.00 0.00 0.00 3.41
1556 2213 8.443937 CAAACTTAAATACTTAGTGAGCAGTCC 58.556 37.037 0.00 0.00 0.00 3.85
1557 2214 9.204570 TCAAACTTAAATACTTAGTGAGCAGTC 57.795 33.333 0.00 0.00 0.00 3.51
1578 2235 7.623268 ATTTCAACTGCGAACTTATTCAAAC 57.377 32.000 0.00 0.00 34.14 2.93
1588 2245 8.015658 AGAATTGTTAGTATTTCAACTGCGAAC 58.984 33.333 0.00 0.00 0.00 3.95
1589 2246 8.094798 AGAATTGTTAGTATTTCAACTGCGAA 57.905 30.769 0.00 0.00 0.00 4.70
1641 2298 6.877322 ACGCCACTAGTTACAGTATCATTTTT 59.123 34.615 0.00 0.00 0.00 1.94
1642 2299 6.312918 CACGCCACTAGTTACAGTATCATTTT 59.687 38.462 0.00 0.00 0.00 1.82
1643 2300 5.810587 CACGCCACTAGTTACAGTATCATTT 59.189 40.000 0.00 0.00 0.00 2.32
1644 2301 5.105473 ACACGCCACTAGTTACAGTATCATT 60.105 40.000 0.00 0.00 0.00 2.57
1645 2302 4.401519 ACACGCCACTAGTTACAGTATCAT 59.598 41.667 0.00 0.00 0.00 2.45
1646 2303 3.760151 ACACGCCACTAGTTACAGTATCA 59.240 43.478 0.00 0.00 0.00 2.15
1647 2304 4.103357 CACACGCCACTAGTTACAGTATC 58.897 47.826 0.00 0.00 0.00 2.24
1648 2305 3.675228 GCACACGCCACTAGTTACAGTAT 60.675 47.826 0.00 0.00 0.00 2.12
1649 2306 2.352030 GCACACGCCACTAGTTACAGTA 60.352 50.000 0.00 0.00 0.00 2.74
1650 2307 1.604693 GCACACGCCACTAGTTACAGT 60.605 52.381 0.00 0.00 0.00 3.55
1651 2308 1.068474 GCACACGCCACTAGTTACAG 58.932 55.000 0.00 0.00 0.00 2.74
1652 2309 0.389757 TGCACACGCCACTAGTTACA 59.610 50.000 0.00 0.00 37.32 2.41
1653 2310 1.504359 TTGCACACGCCACTAGTTAC 58.496 50.000 0.00 0.00 37.32 2.50
1654 2311 2.242047 TTTGCACACGCCACTAGTTA 57.758 45.000 0.00 0.00 37.32 2.24
1655 2312 1.384525 TTTTGCACACGCCACTAGTT 58.615 45.000 0.00 0.00 37.32 2.24
1656 2313 1.384525 TTTTTGCACACGCCACTAGT 58.615 45.000 0.00 0.00 37.32 2.57
1672 2329 6.245408 TGTGGTTATCAGTGATAGGCTTTTT 58.755 36.000 12.50 0.00 0.00 1.94
1673 2330 5.815581 TGTGGTTATCAGTGATAGGCTTTT 58.184 37.500 12.50 0.00 0.00 2.27
1674 2331 5.435686 TGTGGTTATCAGTGATAGGCTTT 57.564 39.130 12.50 0.00 0.00 3.51
1675 2332 5.104360 ACATGTGGTTATCAGTGATAGGCTT 60.104 40.000 12.50 1.88 0.00 4.35
1676 2333 4.410228 ACATGTGGTTATCAGTGATAGGCT 59.590 41.667 12.50 0.00 0.00 4.58
1677 2334 4.708177 ACATGTGGTTATCAGTGATAGGC 58.292 43.478 12.50 9.80 0.00 3.93
1678 2335 7.055667 AGTACATGTGGTTATCAGTGATAGG 57.944 40.000 9.11 0.00 0.00 2.57
1680 2337 9.981114 CATTAGTACATGTGGTTATCAGTGATA 57.019 33.333 9.11 8.84 0.00 2.15
1681 2338 8.704668 TCATTAGTACATGTGGTTATCAGTGAT 58.295 33.333 9.11 11.12 0.00 3.06
1682 2339 7.979537 GTCATTAGTACATGTGGTTATCAGTGA 59.020 37.037 9.11 0.00 0.00 3.41
1685 2342 6.074302 GCGTCATTAGTACATGTGGTTATCAG 60.074 42.308 9.11 0.00 0.00 2.90
1694 2351 2.099263 AGAGCGCGTCATTAGTACATGT 59.901 45.455 8.43 2.69 0.00 3.21
1697 2354 2.921121 CAAAGAGCGCGTCATTAGTACA 59.079 45.455 8.43 0.00 0.00 2.90
1710 2367 1.488957 GCGTGTGAGACAAAGAGCG 59.511 57.895 0.00 0.00 0.00 5.03
1812 2476 3.306917 TGTGCTGCCATCATTTTTCTG 57.693 42.857 0.00 0.00 0.00 3.02
1858 2522 2.673341 AGTCGACGAGAGCAGCCA 60.673 61.111 10.46 0.00 0.00 4.75
1873 2537 1.066918 GGTGGTGTTGACGACGAGT 59.933 57.895 0.00 0.00 31.81 4.18
1874 2538 1.663702 GGGTGGTGTTGACGACGAG 60.664 63.158 0.00 0.00 31.81 4.18
1875 2539 2.418356 GGGTGGTGTTGACGACGA 59.582 61.111 0.00 0.00 31.81 4.20
1876 2540 3.033764 CGGGTGGTGTTGACGACG 61.034 66.667 0.00 0.00 31.81 5.12
1877 2541 2.663852 CCGGGTGGTGTTGACGAC 60.664 66.667 0.00 0.00 0.00 4.34
1878 2542 4.612412 GCCGGGTGGTGTTGACGA 62.612 66.667 2.18 0.00 37.67 4.20
1879 2543 4.619227 AGCCGGGTGGTGTTGACG 62.619 66.667 4.72 0.00 37.67 4.35
1919 2583 1.941999 GCCAAGGCCAGCAATGACTC 61.942 60.000 5.01 0.00 34.56 3.36
1971 2635 2.474526 GCAATGTCACCGTTCAGAATCG 60.475 50.000 0.00 0.00 0.00 3.34
1977 2641 1.225855 GTCAGCAATGTCACCGTTCA 58.774 50.000 0.00 0.00 0.00 3.18
1998 2662 4.520492 GTGTTTGGAAATCCATGTGACTCT 59.480 41.667 2.38 0.00 46.97 3.24
2018 2682 3.321648 TGCGGGATCTGGCAGTGT 61.322 61.111 15.27 4.54 33.52 3.55
2019 2683 2.821366 GTGCGGGATCTGGCAGTG 60.821 66.667 15.27 2.03 40.32 3.66
2043 2716 1.789078 GCATGTCATGGGATCCACGC 61.789 60.000 15.23 0.00 35.80 5.34
2078 2751 0.103823 TCACCCCCTACCCTTTCCAA 60.104 55.000 0.00 0.00 0.00 3.53
2079 2752 0.103823 TTCACCCCCTACCCTTTCCA 60.104 55.000 0.00 0.00 0.00 3.53
2080 2753 0.624254 CTTCACCCCCTACCCTTTCC 59.376 60.000 0.00 0.00 0.00 3.13
2081 2754 0.034380 GCTTCACCCCCTACCCTTTC 60.034 60.000 0.00 0.00 0.00 2.62
2082 2755 1.506907 GGCTTCACCCCCTACCCTTT 61.507 60.000 0.00 0.00 0.00 3.11
2083 2756 1.929088 GGCTTCACCCCCTACCCTT 60.929 63.158 0.00 0.00 0.00 3.95
2084 2757 2.286197 GGCTTCACCCCCTACCCT 60.286 66.667 0.00 0.00 0.00 4.34
2085 2758 2.006991 ATGGCTTCACCCCCTACCC 61.007 63.158 0.00 0.00 37.83 3.69
2092 2765 0.813184 CACATGACATGGCTTCACCC 59.187 55.000 19.39 0.00 37.83 4.61
2105 2778 2.606213 TCCTGCCCGGACACATGA 60.606 61.111 0.73 0.00 36.69 3.07
2131 2804 0.248949 GATCTAGGGTCGTTGGCGTC 60.249 60.000 0.00 0.00 39.49 5.19
2139 2812 0.251430 GGAGGAGGGATCTAGGGTCG 60.251 65.000 0.00 0.00 0.00 4.79
2146 2819 2.427245 CGCGTTGGAGGAGGGATCT 61.427 63.158 0.00 0.00 0.00 2.75
2169 2842 2.002586 GTGGTTGTGGATGTGATCGAG 58.997 52.381 0.00 0.00 0.00 4.04
2210 2883 2.786495 CGCACGTGGGAGGAGCTAT 61.786 63.158 26.95 0.00 0.00 2.97
2243 2916 1.135373 AGAACTGGCGACGACACATAG 60.135 52.381 0.00 0.00 0.00 2.23
2244 2917 0.885879 AGAACTGGCGACGACACATA 59.114 50.000 0.00 0.00 0.00 2.29
2251 2924 1.082756 GCAACAAGAACTGGCGACG 60.083 57.895 0.00 0.00 0.00 5.12
2252 2925 0.317020 GTGCAACAAGAACTGGCGAC 60.317 55.000 0.00 0.00 36.32 5.19
2253 2926 1.771073 CGTGCAACAAGAACTGGCGA 61.771 55.000 0.00 0.00 35.74 5.54
2289 2966 1.770927 TCACCGAAACCTTCCCCCA 60.771 57.895 0.00 0.00 0.00 4.96
2302 2979 1.192146 TCTCCTTTCCCCACTCACCG 61.192 60.000 0.00 0.00 0.00 4.94
2306 2983 1.657804 TCCTTCTCCTTTCCCCACTC 58.342 55.000 0.00 0.00 0.00 3.51
2315 2992 5.728741 ACACCAATCTCTATTCCTTCTCCTT 59.271 40.000 0.00 0.00 0.00 3.36
2381 3062 2.577593 GTCCAGTCGCCTACACCC 59.422 66.667 0.00 0.00 0.00 4.61
2394 3075 2.560119 GCACGTTGCCATTGGTCCA 61.560 57.895 4.26 0.00 37.42 4.02
2401 3082 0.036164 TTACTCCTGCACGTTGCCAT 59.964 50.000 7.38 0.00 44.23 4.40
2402 3083 0.179043 TTTACTCCTGCACGTTGCCA 60.179 50.000 7.38 0.00 44.23 4.92
2423 3104 1.156095 CACTGGCCCCCTTCCTTTT 59.844 57.895 0.00 0.00 0.00 2.27
2425 3106 1.149133 AATCACTGGCCCCCTTCCTT 61.149 55.000 0.00 0.00 0.00 3.36
2427 3108 1.380380 CAATCACTGGCCCCCTTCC 60.380 63.158 0.00 0.00 0.00 3.46
2428 3109 1.380380 CCAATCACTGGCCCCCTTC 60.380 63.158 0.00 0.00 38.76 3.46
2433 3114 2.440980 GGCTCCAATCACTGGCCC 60.441 66.667 0.00 0.00 45.98 5.80
2434 3115 2.825836 CGGCTCCAATCACTGGCC 60.826 66.667 0.00 0.00 45.98 5.36
2447 3132 1.003696 CTCTTTTCCTTTCTCCCGGCT 59.996 52.381 0.00 0.00 0.00 5.52
2449 3134 1.628846 TCCTCTTTTCCTTTCTCCCGG 59.371 52.381 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.