Multiple sequence alignment - TraesCS7A01G054100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G054100 chr7A 100.000 5771 0 0 1 5771 26244270 26238500 0.000000e+00 10658.0
1 TraesCS7A01G054100 chr7A 90.657 867 73 7 4910 5771 285509089 285508226 0.000000e+00 1146.0
2 TraesCS7A01G054100 chr7A 90.493 873 75 8 4903 5771 522717172 522718040 0.000000e+00 1146.0
3 TraesCS7A01G054100 chr7A 80.464 1464 228 41 3161 4595 26103508 26102074 0.000000e+00 1066.0
4 TraesCS7A01G054100 chr7A 80.723 332 32 17 642 970 26296406 26296104 4.500000e-56 230.0
5 TraesCS7A01G054100 chr7A 82.857 105 12 5 1155 1259 26105653 26105555 7.960000e-14 89.8
6 TraesCS7A01G054100 chr7D 88.885 3113 244 56 1833 4888 25338211 25335144 0.000000e+00 3738.0
7 TraesCS7A01G054100 chr7D 87.366 1306 91 38 1 1247 25339868 25338578 0.000000e+00 1430.0
8 TraesCS7A01G054100 chr7D 80.245 1468 231 41 3161 4595 25289767 25288326 0.000000e+00 1050.0
9 TraesCS7A01G054100 chr7D 95.370 324 14 1 1330 1653 25338535 25338213 1.110000e-141 514.0
10 TraesCS7A01G054100 chr7D 82.533 458 41 19 508 965 25346283 25345865 3.290000e-97 366.0
11 TraesCS7A01G054100 chr4A 88.568 1767 167 18 3161 4902 709717807 709716051 0.000000e+00 2111.0
12 TraesCS7A01G054100 chr4A 79.959 1467 230 43 3161 4595 709567559 709566125 0.000000e+00 1022.0
13 TraesCS7A01G054100 chr4A 79.823 1467 232 43 3161 4595 709419932 709418498 0.000000e+00 1011.0
14 TraesCS7A01G054100 chr4A 79.713 1464 239 37 3161 4595 709614009 709612575 0.000000e+00 1005.0
15 TraesCS7A01G054100 chr4A 79.740 1461 232 42 3161 4589 709273602 709272174 0.000000e+00 1000.0
16 TraesCS7A01G054100 chr4A 88.476 807 55 17 827 1626 709721848 709721073 0.000000e+00 941.0
17 TraesCS7A01G054100 chr4A 89.938 646 36 11 987 1626 709720697 709720075 0.000000e+00 806.0
18 TraesCS7A01G054100 chr4A 85.230 826 71 24 2 788 709722656 709721843 0.000000e+00 802.0
19 TraesCS7A01G054100 chr4A 82.794 680 83 20 2022 2684 709719392 709718730 1.390000e-160 577.0
20 TraesCS7A01G054100 chr4A 87.258 361 39 4 4528 4888 709714222 709713869 6.960000e-109 405.0
21 TraesCS7A01G054100 chr4A 97.000 100 3 0 866 965 709736506 709736407 9.940000e-38 169.0
22 TraesCS7A01G054100 chr4A 94.624 93 5 0 642 734 709736654 709736562 1.680000e-30 145.0
23 TraesCS7A01G054100 chr4A 87.952 83 10 0 505 587 709736740 709736658 1.320000e-16 99.0
24 TraesCS7A01G054100 chr4A 78.992 119 16 7 1717 1830 56146168 56146282 8.020000e-09 73.1
25 TraesCS7A01G054100 chr6A 91.686 866 66 6 4910 5771 411742450 411741587 0.000000e+00 1195.0
26 TraesCS7A01G054100 chr6A 91.415 862 70 4 4909 5768 415390380 415391239 0.000000e+00 1179.0
27 TraesCS7A01G054100 chr6A 90.400 875 78 6 4899 5771 415610387 415611257 0.000000e+00 1146.0
28 TraesCS7A01G054100 chr2A 91.002 878 71 8 4899 5771 336525416 336526290 0.000000e+00 1177.0
29 TraesCS7A01G054100 chr2A 91.214 865 72 4 4910 5771 141085142 141084279 0.000000e+00 1173.0
30 TraesCS7A01G054100 chr2A 90.629 875 77 5 4899 5771 211447950 211447079 0.000000e+00 1157.0
31 TraesCS7A01G054100 chr2A 96.040 101 3 1 873 973 126483525 126483426 4.630000e-36 163.0
32 TraesCS7A01G054100 chr2A 92.453 53 1 2 1718 1769 607547178 607547228 8.020000e-09 73.1
33 TraesCS7A01G054100 chr3A 90.983 865 74 4 4909 5771 358203644 358204506 0.000000e+00 1162.0
34 TraesCS7A01G054100 chr3A 93.694 111 3 4 865 971 703897890 703897780 4.630000e-36 163.0
35 TraesCS7A01G054100 chr5B 77.793 1468 270 38 3161 4586 281105685 281107138 0.000000e+00 854.0
36 TraesCS7A01G054100 chr5B 87.907 215 26 0 1337 1551 281103691 281103905 2.670000e-63 254.0
37 TraesCS7A01G054100 chr5D 82.153 734 105 15 3878 4586 246657566 246658298 1.780000e-169 606.0
38 TraesCS7A01G054100 chr5D 78.559 555 114 4 3161 3714 246656845 246657395 1.530000e-95 361.0
39 TraesCS7A01G054100 chr5D 84.211 133 12 3 1651 1782 42069576 42069452 2.820000e-23 121.0
40 TraesCS7A01G054100 chr5D 100.000 28 0 0 1942 1969 507915509 507915482 1.000000e-02 52.8
41 TraesCS7A01G054100 chr5A 81.347 772 120 15 3878 4625 330505150 330505921 1.780000e-169 606.0
42 TraesCS7A01G054100 chr5A 86.607 224 30 0 1337 1560 330502373 330502596 1.240000e-61 248.0
43 TraesCS7A01G054100 chrUn 78.145 787 129 28 3161 3921 350560512 350561281 1.470000e-125 460.0
44 TraesCS7A01G054100 chr7B 87.978 183 14 6 1651 1830 687035433 687035256 5.860000e-50 209.0
45 TraesCS7A01G054100 chr7B 100.000 28 0 0 1944 1971 724956400 724956373 1.000000e-02 52.8
46 TraesCS7A01G054100 chr1D 86.264 182 14 4 1651 1830 253194080 253194252 2.750000e-43 187.0
47 TraesCS7A01G054100 chr1D 79.487 117 16 7 1718 1830 194737830 194737942 6.200000e-10 76.8
48 TraesCS7A01G054100 chr3D 97.030 101 1 2 872 971 498113518 498113617 9.940000e-38 169.0
49 TraesCS7A01G054100 chr2B 95.960 99 4 0 873 971 175075323 175075225 1.660000e-35 161.0
50 TraesCS7A01G054100 chr2B 90.909 55 1 2 1717 1769 64064325 64064273 2.880000e-08 71.3
51 TraesCS7A01G054100 chr4B 94.231 104 5 1 873 976 650932618 650932516 2.150000e-34 158.0
52 TraesCS7A01G054100 chr4B 82.857 140 11 5 1651 1789 115562431 115562304 4.730000e-21 113.0
53 TraesCS7A01G054100 chr4B 100.000 28 0 0 1942 1969 2211741 2211768 1.000000e-02 52.8
54 TraesCS7A01G054100 chr4B 100.000 28 0 0 1942 1969 2241714 2241741 1.000000e-02 52.8
55 TraesCS7A01G054100 chr4B 100.000 28 0 0 1942 1969 526951383 526951356 1.000000e-02 52.8
56 TraesCS7A01G054100 chr3B 80.342 117 15 7 1718 1830 141604409 141604297 1.330000e-11 82.4
57 TraesCS7A01G054100 chr1B 78.906 128 18 7 1716 1838 640058619 640058496 1.720000e-10 78.7
58 TraesCS7A01G054100 chr4D 100.000 29 0 0 1942 1970 1643604 1643632 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G054100 chr7A 26238500 26244270 5770 True 10658.000000 10658 100.000000 1 5771 1 chr7A.!!$R1 5770
1 TraesCS7A01G054100 chr7A 285508226 285509089 863 True 1146.000000 1146 90.657000 4910 5771 1 chr7A.!!$R3 861
2 TraesCS7A01G054100 chr7A 522717172 522718040 868 False 1146.000000 1146 90.493000 4903 5771 1 chr7A.!!$F1 868
3 TraesCS7A01G054100 chr7A 26102074 26105653 3579 True 577.900000 1066 81.660500 1155 4595 2 chr7A.!!$R4 3440
4 TraesCS7A01G054100 chr7D 25335144 25339868 4724 True 1894.000000 3738 90.540333 1 4888 3 chr7D.!!$R3 4887
5 TraesCS7A01G054100 chr7D 25288326 25289767 1441 True 1050.000000 1050 80.245000 3161 4595 1 chr7D.!!$R1 1434
6 TraesCS7A01G054100 chr4A 709566125 709567559 1434 True 1022.000000 1022 79.959000 3161 4595 1 chr4A.!!$R3 1434
7 TraesCS7A01G054100 chr4A 709418498 709419932 1434 True 1011.000000 1011 79.823000 3161 4595 1 chr4A.!!$R2 1434
8 TraesCS7A01G054100 chr4A 709612575 709614009 1434 True 1005.000000 1005 79.713000 3161 4595 1 chr4A.!!$R4 1434
9 TraesCS7A01G054100 chr4A 709272174 709273602 1428 True 1000.000000 1000 79.740000 3161 4589 1 chr4A.!!$R1 1428
10 TraesCS7A01G054100 chr4A 709713869 709722656 8787 True 940.333333 2111 87.044000 2 4902 6 chr4A.!!$R5 4900
11 TraesCS7A01G054100 chr6A 411741587 411742450 863 True 1195.000000 1195 91.686000 4910 5771 1 chr6A.!!$R1 861
12 TraesCS7A01G054100 chr6A 415390380 415391239 859 False 1179.000000 1179 91.415000 4909 5768 1 chr6A.!!$F1 859
13 TraesCS7A01G054100 chr6A 415610387 415611257 870 False 1146.000000 1146 90.400000 4899 5771 1 chr6A.!!$F2 872
14 TraesCS7A01G054100 chr2A 336525416 336526290 874 False 1177.000000 1177 91.002000 4899 5771 1 chr2A.!!$F1 872
15 TraesCS7A01G054100 chr2A 141084279 141085142 863 True 1173.000000 1173 91.214000 4910 5771 1 chr2A.!!$R2 861
16 TraesCS7A01G054100 chr2A 211447079 211447950 871 True 1157.000000 1157 90.629000 4899 5771 1 chr2A.!!$R3 872
17 TraesCS7A01G054100 chr3A 358203644 358204506 862 False 1162.000000 1162 90.983000 4909 5771 1 chr3A.!!$F1 862
18 TraesCS7A01G054100 chr5B 281103691 281107138 3447 False 554.000000 854 82.850000 1337 4586 2 chr5B.!!$F1 3249
19 TraesCS7A01G054100 chr5D 246656845 246658298 1453 False 483.500000 606 80.356000 3161 4586 2 chr5D.!!$F1 1425
20 TraesCS7A01G054100 chr5A 330502373 330505921 3548 False 427.000000 606 83.977000 1337 4625 2 chr5A.!!$F1 3288
21 TraesCS7A01G054100 chrUn 350560512 350561281 769 False 460.000000 460 78.145000 3161 3921 1 chrUn.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 857 0.530744 AGCCAGCGTCACTTATTCGA 59.469 50.000 0.00 0.00 0.00 3.71 F
1222 2285 0.393077 CCCCTTCATAGCTGGTACGG 59.607 60.000 0.00 0.00 38.10 4.02 F
1945 3331 0.104356 TTACCCCCTCTGACCCAACA 60.104 55.000 0.00 0.00 0.00 3.33 F
2565 5311 1.010462 CATGCATGACCATGACGCG 60.010 57.895 22.59 3.53 44.12 6.01 F
3671 7707 1.133790 GTGCGGTACAACGTAGGAGAT 59.866 52.381 0.00 0.00 35.98 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 3015 0.421495 TGATTGGAGAAGGGGGAGGA 59.579 55.000 0.00 0.0 0.00 3.71 R
3182 7215 2.551270 GCGGTGAGCGTGAACAAG 59.449 61.111 5.77 0.0 35.41 3.16 R
3437 7470 0.036765 TGTAGACAATGGCCGTGTCC 60.037 55.000 27.33 17.5 45.39 4.02 R
3732 7768 0.106918 TGTTCGGGAAACAGCCAACT 60.107 50.000 0.00 0.0 42.95 3.16 R
5515 10577 0.033796 CTTGGTCATCTGGCCCACAT 60.034 55.000 0.00 0.0 39.61 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 4.996122 TGAACATGGAAATGTGGCAAATTC 59.004 37.500 2.78 1.65 34.56 2.17
95 97 4.620589 ACATGGAAATGTGGCAAATTCA 57.379 36.364 2.78 0.00 32.79 2.57
123 125 8.723311 AGTTTTGCATCATTGGATTTGTTTATG 58.277 29.630 0.00 0.00 0.00 1.90
156 158 6.111382 TCATCTGATCACTTGGTTTCATCTC 58.889 40.000 0.00 0.00 0.00 2.75
162 164 5.147330 TCACTTGGTTTCATCTCGTGTAT 57.853 39.130 0.00 0.00 0.00 2.29
173 175 9.678941 GTTTCATCTCGTGTATACATGATCTTA 57.321 33.333 24.49 12.98 40.69 2.10
217 221 8.884726 TCTGCACAAAATTAAACTTAAAAACCC 58.115 29.630 0.00 0.00 0.00 4.11
247 251 7.721402 ACCATATTTTTCACTACAACTTGCAA 58.279 30.769 0.00 0.00 0.00 4.08
251 255 7.897575 ATTTTTCACTACAACTTGCAAAACA 57.102 28.000 0.00 0.00 0.00 2.83
273 277 9.905713 AAACATATATTGGAGAGAAACTAGCAA 57.094 29.630 0.00 0.00 0.00 3.91
289 293 2.363683 AGCAAGCCAACTAAGCTCATC 58.636 47.619 0.00 0.00 40.49 2.92
309 313 4.487714 TCTTCGCCTATCTGATTGGTTT 57.512 40.909 17.38 0.00 0.00 3.27
323 334 8.786826 TCTGATTGGTTTTTACCATGTAGTAG 57.213 34.615 0.00 0.00 39.86 2.57
345 356 8.310382 AGTAGATTCTATATTGATCTGTGGTGC 58.690 37.037 0.00 0.00 0.00 5.01
358 369 5.675684 TCTGTGGTGCATACTTGATTCTA 57.324 39.130 0.00 0.00 0.00 2.10
360 371 5.046663 TCTGTGGTGCATACTTGATTCTACA 60.047 40.000 0.00 0.00 0.00 2.74
379 390 8.655651 TTCTACAAAATGTGGAATTGTTTTCC 57.344 30.769 5.34 0.00 41.82 3.13
380 391 7.786030 TCTACAAAATGTGGAATTGTTTTCCA 58.214 30.769 2.98 2.98 45.61 3.53
404 439 9.184523 CCAACATAAACCAATAGTTGATCCTTA 57.815 33.333 0.00 0.00 41.41 2.69
437 472 3.752412 ATGTCAACATGCTCACATTCG 57.248 42.857 0.00 0.00 34.83 3.34
457 492 1.302832 CCTCACCACAGAGCAACCC 60.303 63.158 0.00 0.00 34.26 4.11
577 620 9.190858 CGACTACTAAGTATAGTAACGATCACT 57.809 37.037 12.53 0.00 42.56 3.41
681 729 2.433662 TTTCCATCCATTGATCGGCA 57.566 45.000 0.00 0.00 0.00 5.69
683 731 2.189594 TCCATCCATTGATCGGCATC 57.810 50.000 0.00 0.00 0.00 3.91
684 732 0.800631 CCATCCATTGATCGGCATCG 59.199 55.000 0.00 0.00 37.82 3.84
734 785 1.126846 GGAACAGAACATCGCACTTCG 59.873 52.381 0.00 0.00 40.15 3.79
736 787 1.139989 ACAGAACATCGCACTTCGTG 58.860 50.000 0.00 0.00 39.67 4.35
737 788 1.269569 ACAGAACATCGCACTTCGTGA 60.270 47.619 0.00 0.00 39.67 4.35
738 789 1.995484 CAGAACATCGCACTTCGTGAT 59.005 47.619 0.00 0.00 45.95 3.06
747 798 4.429108 TCGCACTTCGTGATAATCATTCA 58.571 39.130 0.00 0.00 39.67 2.57
767 818 5.738619 TCATAAAGTTCCACAGTAGCAGA 57.261 39.130 0.00 0.00 0.00 4.26
791 842 6.186957 ACATATAATGTGTCAAAAGGAGCCA 58.813 36.000 0.00 0.00 43.01 4.75
805 856 0.924090 GAGCCAGCGTCACTTATTCG 59.076 55.000 0.00 0.00 0.00 3.34
806 857 0.530744 AGCCAGCGTCACTTATTCGA 59.469 50.000 0.00 0.00 0.00 3.71
807 858 0.645868 GCCAGCGTCACTTATTCGAC 59.354 55.000 0.00 0.00 0.00 4.20
814 865 3.554670 GTCACTTATTCGACGCACATC 57.445 47.619 0.00 0.00 0.00 3.06
955 1006 0.863538 CGAATCTCTCAGGCGTCGTG 60.864 60.000 0.00 0.00 0.00 4.35
957 1008 1.400846 GAATCTCTCAGGCGTCGTGTA 59.599 52.381 0.00 0.00 0.00 2.90
1000 1064 6.700960 CAGAAGCTAATACTCATCTCCAAGTG 59.299 42.308 0.00 0.00 0.00 3.16
1038 1102 0.401738 CATGGGAGGTCAGTGTGGTT 59.598 55.000 0.00 0.00 0.00 3.67
1066 1130 3.697166 GAGCCCCATTTTAGACTCCAAA 58.303 45.455 0.00 0.00 0.00 3.28
1067 1131 3.696548 GAGCCCCATTTTAGACTCCAAAG 59.303 47.826 0.00 0.00 0.00 2.77
1221 2284 1.341531 CTCCCCTTCATAGCTGGTACG 59.658 57.143 0.00 0.00 0.00 3.67
1222 2285 0.393077 CCCCTTCATAGCTGGTACGG 59.607 60.000 0.00 0.00 38.10 4.02
1223 2286 1.120530 CCCTTCATAGCTGGTACGGT 58.879 55.000 0.00 0.00 36.83 4.83
1224 2287 2.313317 CCCTTCATAGCTGGTACGGTA 58.687 52.381 0.00 0.00 36.83 4.02
1225 2288 2.035576 CCCTTCATAGCTGGTACGGTAC 59.964 54.545 9.82 9.82 36.83 3.34
1226 2289 2.691526 CCTTCATAGCTGGTACGGTACA 59.308 50.000 19.14 5.63 36.83 2.90
1227 2290 3.321111 CCTTCATAGCTGGTACGGTACAT 59.679 47.826 19.14 1.83 36.83 2.29
1228 2291 4.521639 CCTTCATAGCTGGTACGGTACATA 59.478 45.833 19.14 7.35 36.83 2.29
1229 2292 5.443185 TTCATAGCTGGTACGGTACATAC 57.557 43.478 19.14 7.87 36.83 2.39
1232 2295 1.402968 AGCTGGTACGGTACATACGTG 59.597 52.381 19.14 4.42 45.20 4.49
1233 2296 1.831343 CTGGTACGGTACATACGTGC 58.169 55.000 19.14 4.63 45.20 5.34
1234 2297 1.132834 CTGGTACGGTACATACGTGCA 59.867 52.381 19.14 5.93 46.41 4.57
1235 2298 1.132834 TGGTACGGTACATACGTGCAG 59.867 52.381 19.14 0.00 46.41 4.41
1236 2299 1.401552 GGTACGGTACATACGTGCAGA 59.598 52.381 19.14 0.00 46.41 4.26
1244 2307 1.746220 ACATACGTGCAGACCTCTCTC 59.254 52.381 0.00 0.00 0.00 3.20
1246 2309 1.740297 TACGTGCAGACCTCTCTCTC 58.260 55.000 0.00 0.00 0.00 3.20
1265 2328 3.837731 TCTCTCTCTCTCTCTCTCACACA 59.162 47.826 0.00 0.00 0.00 3.72
1286 2349 2.419673 ACACACACACACACACAATCTG 59.580 45.455 0.00 0.00 0.00 2.90
1601 2841 1.675641 GCTGCACCCTCCAAACGAT 60.676 57.895 0.00 0.00 0.00 3.73
1653 2919 4.214332 GTCTTTTTCCTGATCGAAGTTGCT 59.786 41.667 0.00 0.00 0.00 3.91
1655 2921 4.749245 TTTTCCTGATCGAAGTTGCTTC 57.251 40.909 0.00 0.00 37.16 3.86
1656 2922 3.401033 TTCCTGATCGAAGTTGCTTCA 57.599 42.857 9.20 0.00 40.17 3.02
1657 2923 3.616956 TCCTGATCGAAGTTGCTTCAT 57.383 42.857 9.20 2.73 40.17 2.57
1658 2924 3.525537 TCCTGATCGAAGTTGCTTCATC 58.474 45.455 9.20 10.30 40.17 2.92
1659 2925 3.196469 TCCTGATCGAAGTTGCTTCATCT 59.804 43.478 9.20 0.00 40.17 2.90
1660 2926 4.402474 TCCTGATCGAAGTTGCTTCATCTA 59.598 41.667 9.20 3.38 40.17 1.98
1661 2927 4.505922 CCTGATCGAAGTTGCTTCATCTAC 59.494 45.833 9.20 0.00 40.17 2.59
1662 2928 4.105486 TGATCGAAGTTGCTTCATCTACG 58.895 43.478 9.20 0.00 40.17 3.51
1663 2929 3.570926 TCGAAGTTGCTTCATCTACGT 57.429 42.857 9.20 0.00 40.17 3.57
1664 2930 3.909430 TCGAAGTTGCTTCATCTACGTT 58.091 40.909 0.00 0.00 40.17 3.99
1665 2931 5.050644 TCGAAGTTGCTTCATCTACGTTA 57.949 39.130 0.00 0.00 40.17 3.18
1666 2932 5.463286 TCGAAGTTGCTTCATCTACGTTAA 58.537 37.500 0.00 0.00 40.17 2.01
1667 2933 5.571741 TCGAAGTTGCTTCATCTACGTTAAG 59.428 40.000 0.00 0.00 40.17 1.85
1668 2934 5.532025 AAGTTGCTTCATCTACGTTAAGC 57.468 39.130 0.00 2.85 43.62 3.09
1669 2935 4.822026 AGTTGCTTCATCTACGTTAAGCT 58.178 39.130 15.43 0.00 43.69 3.74
1670 2936 5.962433 AGTTGCTTCATCTACGTTAAGCTA 58.038 37.500 15.43 8.86 43.69 3.32
1671 2937 5.805994 AGTTGCTTCATCTACGTTAAGCTAC 59.194 40.000 17.24 17.24 45.08 3.58
1672 2938 4.348656 TGCTTCATCTACGTTAAGCTACG 58.651 43.478 7.47 7.47 43.69 3.51
1694 2960 5.912360 GTAAGTGTTTACGTAAACTGCCT 57.088 39.130 37.29 29.07 44.36 4.75
1696 2962 7.406799 GTAAGTGTTTACGTAAACTGCCTAA 57.593 36.000 37.29 21.92 44.36 2.69
1697 2963 6.923928 AAGTGTTTACGTAAACTGCCTAAA 57.076 33.333 37.29 21.34 44.36 1.85
1698 2964 6.923928 AGTGTTTACGTAAACTGCCTAAAA 57.076 33.333 37.29 20.75 44.36 1.52
1699 2965 7.500720 AGTGTTTACGTAAACTGCCTAAAAT 57.499 32.000 37.29 20.58 44.36 1.82
1700 2966 8.606040 AGTGTTTACGTAAACTGCCTAAAATA 57.394 30.769 37.29 19.59 44.36 1.40
1701 2967 9.054922 AGTGTTTACGTAAACTGCCTAAAATAA 57.945 29.630 37.29 19.18 44.36 1.40
1702 2968 9.830294 GTGTTTACGTAAACTGCCTAAAATAAT 57.170 29.630 37.29 0.00 44.36 1.28
1707 2973 7.681903 ACGTAAACTGCCTAAAATAATTCTCG 58.318 34.615 0.00 0.00 0.00 4.04
1708 2974 6.627671 CGTAAACTGCCTAAAATAATTCTCGC 59.372 38.462 0.00 0.00 0.00 5.03
1709 2975 5.500645 AACTGCCTAAAATAATTCTCGCC 57.499 39.130 0.00 0.00 0.00 5.54
1710 2976 3.883489 ACTGCCTAAAATAATTCTCGCCC 59.117 43.478 0.00 0.00 0.00 6.13
1711 2977 3.219281 TGCCTAAAATAATTCTCGCCCC 58.781 45.455 0.00 0.00 0.00 5.80
1712 2978 2.557056 GCCTAAAATAATTCTCGCCCCC 59.443 50.000 0.00 0.00 0.00 5.40
1738 3004 1.832998 CCCCCAATGATTTTCAGGTGG 59.167 52.381 3.97 3.97 36.05 4.61
1740 3006 2.539302 CCCAATGATTTTCAGGTGGGT 58.461 47.619 15.92 0.00 44.56 4.51
1741 3007 2.234414 CCCAATGATTTTCAGGTGGGTG 59.766 50.000 15.92 0.00 44.56 4.61
1742 3008 2.234414 CCAATGATTTTCAGGTGGGTGG 59.766 50.000 3.26 0.00 33.92 4.61
1743 3009 2.234414 CAATGATTTTCAGGTGGGTGGG 59.766 50.000 0.00 0.00 0.00 4.61
1744 3010 0.541764 TGATTTTCAGGTGGGTGGGC 60.542 55.000 0.00 0.00 0.00 5.36
1745 3011 1.229177 ATTTTCAGGTGGGTGGGCC 60.229 57.895 0.00 0.00 0.00 5.80
1760 3026 3.421386 GCCCCTTCCTCCCCCTTC 61.421 72.222 0.00 0.00 0.00 3.46
1761 3027 2.461637 CCCCTTCCTCCCCCTTCT 59.538 66.667 0.00 0.00 0.00 2.85
1762 3028 1.694525 CCCCTTCCTCCCCCTTCTC 60.695 68.421 0.00 0.00 0.00 2.87
1763 3029 1.694525 CCCTTCCTCCCCCTTCTCC 60.695 68.421 0.00 0.00 0.00 3.71
1764 3030 1.082954 CCTTCCTCCCCCTTCTCCA 59.917 63.158 0.00 0.00 0.00 3.86
1765 3031 0.550147 CCTTCCTCCCCCTTCTCCAA 60.550 60.000 0.00 0.00 0.00 3.53
1766 3032 1.601248 CTTCCTCCCCCTTCTCCAAT 58.399 55.000 0.00 0.00 0.00 3.16
1767 3033 1.492599 CTTCCTCCCCCTTCTCCAATC 59.507 57.143 0.00 0.00 0.00 2.67
1768 3034 0.421495 TCCTCCCCCTTCTCCAATCA 59.579 55.000 0.00 0.00 0.00 2.57
1769 3035 1.203557 TCCTCCCCCTTCTCCAATCAA 60.204 52.381 0.00 0.00 0.00 2.57
1770 3036 1.855599 CCTCCCCCTTCTCCAATCAAT 59.144 52.381 0.00 0.00 0.00 2.57
1771 3037 3.056080 CCTCCCCCTTCTCCAATCAATA 58.944 50.000 0.00 0.00 0.00 1.90
1772 3038 3.073650 CCTCCCCCTTCTCCAATCAATAG 59.926 52.174 0.00 0.00 0.00 1.73
1773 3039 3.976654 CTCCCCCTTCTCCAATCAATAGA 59.023 47.826 0.00 0.00 0.00 1.98
1774 3040 4.379875 TCCCCCTTCTCCAATCAATAGAA 58.620 43.478 0.00 0.00 0.00 2.10
1775 3041 4.984268 TCCCCCTTCTCCAATCAATAGAAT 59.016 41.667 0.00 0.00 0.00 2.40
1776 3042 5.436374 TCCCCCTTCTCCAATCAATAGAATT 59.564 40.000 0.00 0.00 0.00 2.17
1777 3043 5.772169 CCCCCTTCTCCAATCAATAGAATTC 59.228 44.000 0.00 0.00 0.00 2.17
1778 3044 6.367983 CCCCTTCTCCAATCAATAGAATTCA 58.632 40.000 8.44 0.00 0.00 2.57
1779 3045 6.264067 CCCCTTCTCCAATCAATAGAATTCAC 59.736 42.308 8.44 0.00 0.00 3.18
1780 3046 6.017605 CCCTTCTCCAATCAATAGAATTCACG 60.018 42.308 8.44 0.00 0.00 4.35
1781 3047 6.540189 CCTTCTCCAATCAATAGAATTCACGT 59.460 38.462 8.44 0.00 0.00 4.49
1782 3048 7.066284 CCTTCTCCAATCAATAGAATTCACGTT 59.934 37.037 8.44 0.00 0.00 3.99
1783 3049 7.307493 TCTCCAATCAATAGAATTCACGTTG 57.693 36.000 8.44 9.27 0.00 4.10
1784 3050 5.879237 TCCAATCAATAGAATTCACGTTGC 58.121 37.500 8.44 0.00 0.00 4.17
1785 3051 5.036737 CCAATCAATAGAATTCACGTTGCC 58.963 41.667 8.44 0.00 0.00 4.52
1786 3052 4.900635 ATCAATAGAATTCACGTTGCCC 57.099 40.909 8.44 0.00 0.00 5.36
1787 3053 3.950397 TCAATAGAATTCACGTTGCCCT 58.050 40.909 8.44 0.00 0.00 5.19
1788 3054 4.331968 TCAATAGAATTCACGTTGCCCTT 58.668 39.130 8.44 0.00 0.00 3.95
1789 3055 4.764823 TCAATAGAATTCACGTTGCCCTTT 59.235 37.500 8.44 0.00 0.00 3.11
1790 3056 5.941058 TCAATAGAATTCACGTTGCCCTTTA 59.059 36.000 8.44 0.00 0.00 1.85
1791 3057 6.601613 TCAATAGAATTCACGTTGCCCTTTAT 59.398 34.615 8.44 0.00 0.00 1.40
1792 3058 4.701956 AGAATTCACGTTGCCCTTTATG 57.298 40.909 8.44 0.00 0.00 1.90
1793 3059 4.079253 AGAATTCACGTTGCCCTTTATGT 58.921 39.130 8.44 0.00 0.00 2.29
1794 3060 5.250200 AGAATTCACGTTGCCCTTTATGTA 58.750 37.500 8.44 0.00 0.00 2.29
1795 3061 5.708230 AGAATTCACGTTGCCCTTTATGTAA 59.292 36.000 8.44 0.00 0.00 2.41
1796 3062 6.377146 AGAATTCACGTTGCCCTTTATGTAAT 59.623 34.615 8.44 0.00 0.00 1.89
1797 3063 7.554835 AGAATTCACGTTGCCCTTTATGTAATA 59.445 33.333 8.44 0.00 0.00 0.98
1798 3064 7.817418 ATTCACGTTGCCCTTTATGTAATAT 57.183 32.000 0.00 0.00 0.00 1.28
1799 3065 8.911918 ATTCACGTTGCCCTTTATGTAATATA 57.088 30.769 0.00 0.00 0.00 0.86
1800 3066 7.718272 TCACGTTGCCCTTTATGTAATATAC 57.282 36.000 0.00 0.00 0.00 1.47
1801 3067 6.421501 TCACGTTGCCCTTTATGTAATATACG 59.578 38.462 0.00 0.00 0.00 3.06
1802 3068 6.201425 CACGTTGCCCTTTATGTAATATACGT 59.799 38.462 0.00 0.00 37.77 3.57
1803 3069 7.381948 CACGTTGCCCTTTATGTAATATACGTA 59.618 37.037 0.00 0.00 35.84 3.57
1804 3070 7.925483 ACGTTGCCCTTTATGTAATATACGTAA 59.075 33.333 0.00 0.00 38.12 3.18
1805 3071 8.928733 CGTTGCCCTTTATGTAATATACGTAAT 58.071 33.333 0.00 0.00 39.23 1.89
1903 3284 5.871539 ACGCCAACTACCAAATTTATTACG 58.128 37.500 0.00 0.00 0.00 3.18
1911 3292 7.541162 ACTACCAAATTTATTACGCCCTTTTC 58.459 34.615 0.00 0.00 0.00 2.29
1945 3331 0.104356 TTACCCCCTCTGACCCAACA 60.104 55.000 0.00 0.00 0.00 3.33
1961 3347 5.947663 ACCCAACAATTAATATGGATCGGA 58.052 37.500 13.65 0.00 34.82 4.55
1979 3365 7.180946 TGGATCGGATGGAGTAGATAAAATGAT 59.819 37.037 0.00 0.00 0.00 2.45
2012 3408 7.461749 TCTTCTTCTTTTTGTGGTGGAGATAT 58.538 34.615 0.00 0.00 0.00 1.63
2152 3945 5.885912 AGAAACACAACACCAAACTACATCT 59.114 36.000 0.00 0.00 0.00 2.90
2159 3952 6.772716 ACAACACCAAACTACATCTTCAGAAT 59.227 34.615 0.00 0.00 0.00 2.40
2443 5181 6.712241 AGAAACTCATTGTTCGATGTGTAG 57.288 37.500 7.78 0.00 38.03 2.74
2447 5185 3.925379 TCATTGTTCGATGTGTAGCACT 58.075 40.909 0.90 0.00 35.11 4.40
2452 5190 6.880822 TTGTTCGATGTGTAGCACTATTAC 57.119 37.500 0.90 0.00 35.11 1.89
2454 5192 6.033966 TGTTCGATGTGTAGCACTATTACTG 58.966 40.000 0.90 0.00 35.11 2.74
2474 5212 6.808008 ACTGAAATGTTCCTGTCATGTAAG 57.192 37.500 0.00 0.00 0.00 2.34
2485 5223 4.095483 CCTGTCATGTAAGAAAGCCATGTC 59.905 45.833 0.00 0.00 37.73 3.06
2492 5230 6.012658 TGTAAGAAAGCCATGTCAATGTTC 57.987 37.500 0.00 0.00 31.27 3.18
2494 5232 3.411446 AGAAAGCCATGTCAATGTTCGA 58.589 40.909 0.00 0.00 31.27 3.71
2495 5233 4.012374 AGAAAGCCATGTCAATGTTCGAT 58.988 39.130 0.00 0.00 31.27 3.59
2498 5236 2.421073 AGCCATGTCAATGTTCGATGTG 59.579 45.455 0.00 0.00 31.27 3.21
2499 5237 2.162208 GCCATGTCAATGTTCGATGTGT 59.838 45.455 0.00 0.00 31.27 3.72
2500 5238 3.373748 GCCATGTCAATGTTCGATGTGTA 59.626 43.478 0.00 0.00 31.27 2.90
2501 5239 4.494690 GCCATGTCAATGTTCGATGTGTAG 60.495 45.833 0.00 0.00 31.27 2.74
2502 5240 4.494690 CCATGTCAATGTTCGATGTGTAGC 60.495 45.833 0.00 0.00 31.27 3.58
2559 5305 5.801531 AAGAATTATGCATGCATGACCAT 57.198 34.783 37.43 24.10 37.82 3.55
2565 5311 1.010462 CATGCATGACCATGACGCG 60.010 57.895 22.59 3.53 44.12 6.01
2580 5326 4.876606 GCGTTTGTGCGACGTTAA 57.123 50.000 0.00 0.00 42.22 2.01
2601 5347 7.148705 CGTTAAAATGACAAATACGACCTCTGA 60.149 37.037 0.00 0.00 0.00 3.27
2619 5365 5.523188 CCTCTGACTCATGCTCTCAAATAAC 59.477 44.000 0.00 0.00 0.00 1.89
2684 5691 7.669304 TGATCACTTTCATATCCAAACTCCAAA 59.331 33.333 0.00 0.00 0.00 3.28
2759 6185 8.475331 ACTTTACACACGAATATTTCTGTAGG 57.525 34.615 0.00 0.00 0.00 3.18
2863 6447 9.636879 AAAAACAAATTTGCAAATTGTTAGCTT 57.363 22.222 32.23 23.31 38.53 3.74
2894 6489 5.786401 ATAACTCACTGCGACAATTCTTC 57.214 39.130 0.00 0.00 0.00 2.87
2913 6508 6.211587 TCTTCTTCATGGTGCCAATATTTG 57.788 37.500 0.00 0.00 0.00 2.32
2932 6528 5.344743 TTTGGTTCCACTTTTGCAACATA 57.655 34.783 0.00 0.00 0.00 2.29
2992 6723 6.607735 AACAAAAAGGAAACATGATTGCAG 57.392 33.333 9.78 0.00 0.00 4.41
3019 6901 5.054390 ACCTTTATATGTTTGCAACACCG 57.946 39.130 0.00 0.00 45.50 4.94
3099 7080 6.036953 TGTTTGCAGCATTCTTTACCTTTTTG 59.963 34.615 0.00 0.00 0.00 2.44
3147 7128 8.681486 AGCAATACAACTATAAAGATCATGCA 57.319 30.769 0.00 0.00 0.00 3.96
3149 7130 9.903682 GCAATACAACTATAAAGATCATGCATT 57.096 29.630 0.00 0.00 0.00 3.56
3182 7215 3.531538 TGTCATTATCCAGGCTTTCGTC 58.468 45.455 0.00 0.00 0.00 4.20
3246 7279 2.048597 GCACATCGTCGTCCACCA 60.049 61.111 0.00 0.00 0.00 4.17
3302 7335 2.422597 GTGCTGTATGCCGCCATATTA 58.577 47.619 0.00 0.00 42.00 0.98
3308 7341 4.968259 TGTATGCCGCCATATTACTTCTT 58.032 39.130 0.00 0.00 36.40 2.52
3437 7470 1.815421 CGGCTCCTTCATCGTTGGG 60.815 63.158 0.00 0.00 0.00 4.12
3671 7707 1.133790 GTGCGGTACAACGTAGGAGAT 59.866 52.381 0.00 0.00 35.98 2.75
3678 7714 2.058595 AACGTAGGAGATGGCGCCT 61.059 57.895 29.70 13.55 46.72 5.52
3684 7720 2.184322 GAGATGGCGCCTTCGTGA 59.816 61.111 30.11 10.50 38.14 4.35
3685 7721 2.125512 AGATGGCGCCTTCGTGAC 60.126 61.111 30.11 12.36 38.14 3.67
3686 7722 2.434185 GATGGCGCCTTCGTGACA 60.434 61.111 29.70 4.25 43.17 3.58
3698 7734 3.188786 GTGACATCCGGCAGCGAC 61.189 66.667 0.00 0.00 0.00 5.19
3744 7841 3.027974 ACGTAGAGAGTTGGCTGTTTC 57.972 47.619 0.00 0.00 0.00 2.78
3747 7844 0.035458 AGAGAGTTGGCTGTTTCCCG 59.965 55.000 0.00 0.00 0.00 5.14
3759 7857 1.766496 TGTTTCCCGAACAGGAGACTT 59.234 47.619 3.31 0.00 43.13 3.01
3762 7860 3.570912 TTCCCGAACAGGAGACTTTTT 57.429 42.857 0.00 0.00 45.00 1.94
3777 7883 5.953571 AGACTTTTTACCTCTGGATTGGTT 58.046 37.500 0.00 0.00 37.74 3.67
3821 7942 3.257469 TGCAGATTTCTGAATCGAGCT 57.743 42.857 11.70 0.00 46.59 4.09
3841 7962 0.179145 GCCATGATCACTGCAGCAAC 60.179 55.000 15.27 3.71 0.00 4.17
3844 7965 1.132453 CATGATCACTGCAGCAACTGG 59.868 52.381 15.27 0.00 31.21 4.00
3854 7975 1.963338 AGCAACTGGAAGCGACAGC 60.963 57.895 5.44 0.00 45.58 4.40
3865 7986 3.680786 CGACAGCTCACGGGGTGA 61.681 66.667 2.55 0.00 40.50 4.02
3941 8071 1.984570 CCTCCTCAGCGTCTTCCCA 60.985 63.158 0.00 0.00 0.00 4.37
4084 8214 4.180946 CGTCTGCTCCCTCGTCGG 62.181 72.222 0.00 0.00 0.00 4.79
4136 8266 1.333636 CCGTCTTCCCTCTCTGGCAT 61.334 60.000 0.00 0.00 0.00 4.40
4200 8333 1.791103 CGGCCATGTGGTGAACGTTT 61.791 55.000 0.46 0.00 37.57 3.60
4364 8521 2.634639 TGGCCTTCTACTACCTGGAA 57.365 50.000 3.32 0.00 0.00 3.53
4375 8532 3.474920 ACTACCTGGAATTCCCCAAGAT 58.525 45.455 21.90 2.05 35.47 2.40
4524 8681 4.181578 GCTAGACAACGTGTATTGGACAT 58.818 43.478 0.00 0.00 41.14 3.06
4591 8748 4.547532 GTCTGGCGATACAAGTACCATAG 58.452 47.826 0.00 0.00 0.00 2.23
4604 8761 2.565645 CCATAGCCGAGGGACGAGG 61.566 68.421 0.00 0.00 45.77 4.63
4627 8784 4.757149 GGTGGCAATGTAGACAAGGATATC 59.243 45.833 0.00 0.00 0.00 1.63
4648 8805 6.593268 ATCATGTGTGATTTGTCCATGAAA 57.407 33.333 4.91 0.00 42.37 2.69
4651 8808 7.443477 TCATGTGTGATTTGTCCATGAAAAAT 58.557 30.769 0.00 0.00 39.02 1.82
4653 8810 8.649841 CATGTGTGATTTGTCCATGAAAAATAC 58.350 33.333 0.00 0.00 35.96 1.89
4654 8811 7.950512 TGTGTGATTTGTCCATGAAAAATACT 58.049 30.769 0.00 0.00 30.55 2.12
4655 8812 7.866898 TGTGTGATTTGTCCATGAAAAATACTG 59.133 33.333 0.00 0.00 30.55 2.74
4681 8838 7.816995 GGCAATATGTGTTACCAAAATTCTCAA 59.183 33.333 0.00 0.00 0.00 3.02
4702 8859 9.948964 TCTCAATTTTCTCTTCTCATTCATACA 57.051 29.630 0.00 0.00 0.00 2.29
4755 8912 8.960591 CAAGGAGGAACAAAATGATAATGTACT 58.039 33.333 0.00 0.00 0.00 2.73
4756 8913 8.511604 AGGAGGAACAAAATGATAATGTACTG 57.488 34.615 0.00 0.00 0.00 2.74
4864 9021 3.005684 TGAGGACATGAAATTTGTGCCAC 59.994 43.478 0.00 0.00 36.21 5.01
4865 9022 2.299867 AGGACATGAAATTTGTGCCACC 59.700 45.455 0.00 0.47 36.21 4.61
4874 9031 0.684805 TTTGTGCCACCGGGTTCTTT 60.685 50.000 6.32 0.00 36.17 2.52
4917 9074 8.740123 TTGTAATTATTGATACGTGTTGGGAT 57.260 30.769 0.00 0.00 0.00 3.85
5086 9380 5.576447 AAACCGCCATATGTAAAGAAAGG 57.424 39.130 1.24 0.00 0.00 3.11
5093 9388 7.186804 CGCCATATGTAAAGAAAGGTTGTAAG 58.813 38.462 1.24 0.00 0.00 2.34
5105 9401 6.378280 AGAAAGGTTGTAAGGAAAGGCATATG 59.622 38.462 0.00 0.00 0.00 1.78
5337 10097 4.047142 GGCCGAACTAGTATAAAACCTCG 58.953 47.826 0.00 0.00 0.00 4.63
5379 10244 7.572546 TTAACCCCTTTAAGCTTCCTAGTTA 57.427 36.000 0.00 2.60 0.00 2.24
5401 10266 2.029623 GATGGCCCTACGACTAAGTCA 58.970 52.381 0.00 0.00 32.09 3.41
5433 10298 1.811965 CATCTGCCGTGACAATTCCAA 59.188 47.619 0.00 0.00 0.00 3.53
5515 10577 1.120530 GAAGGGCTCAAGGGATACGA 58.879 55.000 0.00 0.00 37.60 3.43
5603 10881 3.733236 CGGCTCAATTGAGTACGGA 57.267 52.632 30.88 0.00 43.85 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 7.972832 AATCAATGCTATTTTAATGCCATGG 57.027 32.000 7.63 7.63 0.00 3.66
69 71 5.735285 TTTGCCACATTTCCATGTTCATA 57.265 34.783 0.00 0.00 41.16 2.15
78 80 3.993920 ACTGTGAATTTGCCACATTTCC 58.006 40.909 0.00 0.00 42.79 3.13
94 96 5.467399 ACAAATCCAATGATGCAAAACTGTG 59.533 36.000 0.00 0.00 0.00 3.66
95 97 5.613329 ACAAATCCAATGATGCAAAACTGT 58.387 33.333 0.00 0.00 0.00 3.55
123 125 6.820656 ACCAAGTGATCAGATGAGTTTATCAC 59.179 38.462 0.00 0.00 44.28 3.06
130 132 5.233083 TGAAACCAAGTGATCAGATGAGT 57.767 39.130 0.00 0.00 0.00 3.41
173 175 8.579850 TGTGCAGAACCTTTTATATCAGAAAT 57.420 30.769 0.00 0.00 0.00 2.17
215 219 9.581099 GTTGTAGTGAAAAATATGGTAAATGGG 57.419 33.333 0.00 0.00 0.00 4.00
235 239 9.507280 CTCCAATATATGTTTTGCAAGTTGTAG 57.493 33.333 4.48 0.00 0.00 2.74
247 251 9.905713 TTGCTAGTTTCTCTCCAATATATGTTT 57.094 29.630 0.00 0.00 0.00 2.83
251 255 7.164803 GGCTTGCTAGTTTCTCTCCAATATAT 58.835 38.462 0.00 0.00 0.00 0.86
273 277 2.898705 CGAAGATGAGCTTAGTTGGCT 58.101 47.619 0.00 0.00 43.26 4.75
289 293 5.567138 AAAAACCAATCAGATAGGCGAAG 57.433 39.130 0.00 0.00 0.00 3.79
323 334 7.918536 ATGCACCACAGATCAATATAGAATC 57.081 36.000 0.00 0.00 0.00 2.52
378 389 7.645058 AGGATCAACTATTGGTTTATGTTGG 57.355 36.000 0.00 0.00 38.64 3.77
380 391 9.975218 AGTAAGGATCAACTATTGGTTTATGTT 57.025 29.630 0.00 0.00 35.74 2.71
404 439 9.265901 GAGCATGTTGACATAAACATAGATAGT 57.734 33.333 2.48 0.00 46.52 2.12
409 444 7.075674 TGTGAGCATGTTGACATAAACATAG 57.924 36.000 0.00 0.39 46.52 2.23
419 454 1.466360 GCCGAATGTGAGCATGTTGAC 60.466 52.381 0.00 0.00 35.15 3.18
437 472 1.968540 GTTGCTCTGTGGTGAGGCC 60.969 63.158 0.00 0.00 34.82 5.19
507 542 0.109964 TTTGTATTCGCCGCTTGCAC 60.110 50.000 0.00 0.00 41.33 4.57
577 620 2.093021 AGCAAAAGCCAAAGCCAAAAGA 60.093 40.909 0.00 0.00 41.25 2.52
681 729 3.620785 GAGGGCGCTCCATCCGAT 61.621 66.667 19.61 0.00 37.20 4.18
683 731 4.598894 CAGAGGGCGCTCCATCCG 62.599 72.222 25.68 7.19 43.92 4.18
684 732 4.925861 GCAGAGGGCGCTCCATCC 62.926 72.222 25.68 9.13 43.92 3.51
734 785 9.941664 CTGTGGAACTTTATGAATGATTATCAC 57.058 33.333 0.00 0.00 38.04 3.06
738 789 9.109393 GCTACTGTGGAACTTTATGAATGATTA 57.891 33.333 0.00 0.00 38.04 1.75
747 798 5.483685 TGTCTGCTACTGTGGAACTTTAT 57.516 39.130 0.00 0.00 38.04 1.40
767 818 6.186957 TGGCTCCTTTTGACACATTATATGT 58.813 36.000 0.00 0.00 46.22 2.29
805 856 2.032377 TCGGAAAACAAAGATGTGCGTC 60.032 45.455 0.00 0.00 40.46 5.19
806 857 1.944024 TCGGAAAACAAAGATGTGCGT 59.056 42.857 0.00 0.00 40.46 5.24
807 858 2.679355 TCGGAAAACAAAGATGTGCG 57.321 45.000 0.00 0.00 40.46 5.34
811 862 5.181690 TGTCCTTTCGGAAAACAAAGATG 57.818 39.130 4.53 0.00 42.08 2.90
814 865 9.855021 ATATTTATGTCCTTTCGGAAAACAAAG 57.145 29.630 10.93 0.00 42.08 2.77
851 902 6.183359 GCGTCACATGTGAACAATAATTTTCC 60.183 38.462 29.42 11.52 41.85 3.13
856 907 5.627499 AAGCGTCACATGTGAACAATAAT 57.373 34.783 29.42 10.00 41.85 1.28
860 911 2.223456 CCAAAGCGTCACATGTGAACAA 60.223 45.455 29.42 5.41 41.85 2.83
861 912 1.333308 CCAAAGCGTCACATGTGAACA 59.667 47.619 29.42 5.81 41.85 3.18
862 913 1.925946 GCCAAAGCGTCACATGTGAAC 60.926 52.381 29.42 23.06 41.85 3.18
863 914 0.310543 GCCAAAGCGTCACATGTGAA 59.689 50.000 29.42 11.66 41.85 3.18
870 921 2.665185 ACTCGGCCAAAGCGTCAC 60.665 61.111 2.24 0.00 41.24 3.67
966 1024 4.273318 AGTATTAGCTTCTGGGGCAAAAG 58.727 43.478 0.00 0.00 0.00 2.27
976 1034 6.382570 ACACTTGGAGATGAGTATTAGCTTCT 59.617 38.462 0.00 0.00 0.00 2.85
977 1035 6.578023 ACACTTGGAGATGAGTATTAGCTTC 58.422 40.000 0.00 0.00 0.00 3.86
1000 1064 7.067421 TCCCATGGAGCTACTGGTATATATAC 58.933 42.308 15.22 13.60 0.00 1.47
1030 1094 1.207329 GGGCTCGAGATAAACCACACT 59.793 52.381 18.75 0.00 0.00 3.55
1038 1102 4.654262 AGTCTAAAATGGGGCTCGAGATAA 59.346 41.667 18.75 0.00 0.00 1.75
1066 1130 8.605325 TCCTAGCTACTTAATTAGTTTGGACT 57.395 34.615 12.92 0.48 38.33 3.85
1067 1131 9.478768 GATCCTAGCTACTTAATTAGTTTGGAC 57.521 37.037 16.98 10.49 37.15 4.02
1221 2284 1.749634 AGAGGTCTGCACGTATGTACC 59.250 52.381 0.00 0.00 0.00 3.34
1222 2285 2.683867 AGAGAGGTCTGCACGTATGTAC 59.316 50.000 0.00 0.00 0.00 2.90
1223 2286 2.943690 GAGAGAGGTCTGCACGTATGTA 59.056 50.000 0.00 0.00 30.97 2.29
1224 2287 1.746220 GAGAGAGGTCTGCACGTATGT 59.254 52.381 0.00 0.00 30.97 2.29
1225 2288 2.020720 AGAGAGAGGTCTGCACGTATG 58.979 52.381 0.00 0.00 30.97 2.39
1226 2289 2.092646 AGAGAGAGAGGTCTGCACGTAT 60.093 50.000 0.00 0.00 30.97 3.06
1227 2290 1.279558 AGAGAGAGAGGTCTGCACGTA 59.720 52.381 0.00 0.00 30.97 3.57
1228 2291 0.037590 AGAGAGAGAGGTCTGCACGT 59.962 55.000 0.00 0.00 30.97 4.49
1229 2292 0.732571 GAGAGAGAGAGGTCTGCACG 59.267 60.000 0.00 0.00 30.97 5.34
1231 2294 1.915489 AGAGAGAGAGAGAGGTCTGCA 59.085 52.381 0.00 0.00 30.97 4.41
1232 2295 2.171448 AGAGAGAGAGAGAGAGGTCTGC 59.829 54.545 0.00 0.00 30.97 4.26
1233 2296 3.708631 AGAGAGAGAGAGAGAGAGGTCTG 59.291 52.174 0.00 0.00 30.97 3.51
1234 2297 3.964031 GAGAGAGAGAGAGAGAGAGGTCT 59.036 52.174 0.00 0.00 34.86 3.85
1235 2298 3.964031 AGAGAGAGAGAGAGAGAGAGGTC 59.036 52.174 0.00 0.00 0.00 3.85
1236 2299 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
1244 2307 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
1246 2309 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
1265 2328 2.419673 CAGATTGTGTGTGTGTGTGTGT 59.580 45.455 0.00 0.00 0.00 3.72
1286 2349 6.199908 ACATACATACGTCTAGTCGTCTACAC 59.800 42.308 18.09 0.00 43.12 2.90
1290 2353 7.116090 GTGATACATACATACGTCTAGTCGTCT 59.884 40.741 18.09 6.45 43.12 4.18
1292 2355 6.927936 AGTGATACATACATACGTCTAGTCGT 59.072 38.462 18.54 18.54 45.97 4.34
1293 2356 7.348808 AGTGATACATACATACGTCTAGTCG 57.651 40.000 7.86 7.86 0.00 4.18
1295 2358 6.128607 GCGAGTGATACATACATACGTCTAGT 60.129 42.308 0.00 0.00 0.00 2.57
1365 2430 1.068585 GTTGGTCGTCCCGTTGACT 59.931 57.895 0.00 0.00 42.13 3.41
1567 2632 4.329801 GGTGCAGCAAATTAAATTGGTAGC 59.670 41.667 11.86 12.96 38.87 3.58
1601 2841 0.173481 CAAGGCAGATCGAAGACGGA 59.827 55.000 0.00 0.00 42.51 4.69
1672 2938 5.912360 AGGCAGTTTACGTAAACACTTAC 57.088 39.130 38.51 26.81 45.97 2.34
1673 2939 8.430801 TTTTAGGCAGTTTACGTAAACACTTA 57.569 30.769 38.51 29.41 45.97 2.24
1674 2940 6.923928 TTTAGGCAGTTTACGTAAACACTT 57.076 33.333 38.51 30.19 45.97 3.16
1675 2941 6.923928 TTTTAGGCAGTTTACGTAAACACT 57.076 33.333 38.51 33.22 45.97 3.55
1676 2942 9.830294 ATTATTTTAGGCAGTTTACGTAAACAC 57.170 29.630 38.51 31.35 45.97 3.32
1681 2947 8.810427 CGAGAATTATTTTAGGCAGTTTACGTA 58.190 33.333 0.00 0.00 0.00 3.57
1682 2948 7.675637 GCGAGAATTATTTTAGGCAGTTTACGT 60.676 37.037 0.00 0.00 0.00 3.57
1683 2949 6.627671 GCGAGAATTATTTTAGGCAGTTTACG 59.372 38.462 0.00 0.00 0.00 3.18
1684 2950 6.910972 GGCGAGAATTATTTTAGGCAGTTTAC 59.089 38.462 0.00 0.00 0.00 2.01
1685 2951 6.038936 GGGCGAGAATTATTTTAGGCAGTTTA 59.961 38.462 4.87 0.00 0.00 2.01
1686 2952 5.163550 GGGCGAGAATTATTTTAGGCAGTTT 60.164 40.000 4.87 0.00 0.00 2.66
1687 2953 4.338400 GGGCGAGAATTATTTTAGGCAGTT 59.662 41.667 4.87 0.00 0.00 3.16
1688 2954 3.883489 GGGCGAGAATTATTTTAGGCAGT 59.117 43.478 4.87 0.00 0.00 4.40
1689 2955 3.253432 GGGGCGAGAATTATTTTAGGCAG 59.747 47.826 4.87 0.00 0.00 4.85
1690 2956 3.219281 GGGGCGAGAATTATTTTAGGCA 58.781 45.455 4.87 0.00 0.00 4.75
1691 2957 2.557056 GGGGGCGAGAATTATTTTAGGC 59.443 50.000 0.00 0.00 0.00 3.93
1718 2984 1.832998 CCACCTGAAAATCATTGGGGG 59.167 52.381 0.00 0.00 30.18 5.40
1719 2985 1.832998 CCCACCTGAAAATCATTGGGG 59.167 52.381 15.01 7.33 42.06 4.96
1721 2987 2.234414 CCACCCACCTGAAAATCATTGG 59.766 50.000 2.57 2.57 32.18 3.16
1722 2988 2.234414 CCCACCCACCTGAAAATCATTG 59.766 50.000 0.00 0.00 0.00 2.82
1723 2989 2.539302 CCCACCCACCTGAAAATCATT 58.461 47.619 0.00 0.00 0.00 2.57
1724 2990 1.896755 GCCCACCCACCTGAAAATCAT 60.897 52.381 0.00 0.00 0.00 2.45
1725 2991 0.541764 GCCCACCCACCTGAAAATCA 60.542 55.000 0.00 0.00 0.00 2.57
1726 2992 1.257750 GGCCCACCCACCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
1727 2993 1.229177 GGCCCACCCACCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
1728 2994 2.200092 GGCCCACCCACCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
1743 3009 3.421386 GAAGGGGGAGGAAGGGGC 61.421 72.222 0.00 0.00 0.00 5.80
1744 3010 1.694525 GAGAAGGGGGAGGAAGGGG 60.695 68.421 0.00 0.00 0.00 4.79
1745 3011 1.694525 GGAGAAGGGGGAGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
1746 3012 0.550147 TTGGAGAAGGGGGAGGAAGG 60.550 60.000 0.00 0.00 0.00 3.46
1747 3013 1.492599 GATTGGAGAAGGGGGAGGAAG 59.507 57.143 0.00 0.00 0.00 3.46
1748 3014 1.203557 TGATTGGAGAAGGGGGAGGAA 60.204 52.381 0.00 0.00 0.00 3.36
1749 3015 0.421495 TGATTGGAGAAGGGGGAGGA 59.579 55.000 0.00 0.00 0.00 3.71
1750 3016 1.298953 TTGATTGGAGAAGGGGGAGG 58.701 55.000 0.00 0.00 0.00 4.30
1751 3017 3.976654 TCTATTGATTGGAGAAGGGGGAG 59.023 47.826 0.00 0.00 0.00 4.30
1752 3018 4.021007 TCTATTGATTGGAGAAGGGGGA 57.979 45.455 0.00 0.00 0.00 4.81
1753 3019 4.796110 TTCTATTGATTGGAGAAGGGGG 57.204 45.455 0.00 0.00 0.00 5.40
1754 3020 6.264067 GTGAATTCTATTGATTGGAGAAGGGG 59.736 42.308 7.05 0.00 32.94 4.79
1755 3021 6.017605 CGTGAATTCTATTGATTGGAGAAGGG 60.018 42.308 7.05 0.00 32.94 3.95
1756 3022 6.540189 ACGTGAATTCTATTGATTGGAGAAGG 59.460 38.462 7.05 0.00 32.94 3.46
1757 3023 7.545362 ACGTGAATTCTATTGATTGGAGAAG 57.455 36.000 7.05 0.00 32.94 2.85
1758 3024 7.626240 GCAACGTGAATTCTATTGATTGGAGAA 60.626 37.037 16.29 0.00 33.90 2.87
1759 3025 6.183360 GCAACGTGAATTCTATTGATTGGAGA 60.183 38.462 16.29 0.00 0.00 3.71
1760 3026 5.967674 GCAACGTGAATTCTATTGATTGGAG 59.032 40.000 16.29 0.00 0.00 3.86
1761 3027 5.163663 GGCAACGTGAATTCTATTGATTGGA 60.164 40.000 16.29 0.00 0.00 3.53
1762 3028 5.036737 GGCAACGTGAATTCTATTGATTGG 58.963 41.667 16.29 0.00 0.00 3.16
1763 3029 5.036737 GGGCAACGTGAATTCTATTGATTG 58.963 41.667 16.29 9.59 37.60 2.67
1764 3030 4.949856 AGGGCAACGTGAATTCTATTGATT 59.050 37.500 16.29 3.45 37.60 2.57
1765 3031 4.526970 AGGGCAACGTGAATTCTATTGAT 58.473 39.130 16.29 3.90 37.60 2.57
1766 3032 3.950397 AGGGCAACGTGAATTCTATTGA 58.050 40.909 16.29 0.00 37.60 2.57
1767 3033 4.701956 AAGGGCAACGTGAATTCTATTG 57.298 40.909 7.05 9.29 37.60 1.90
1768 3034 6.377146 ACATAAAGGGCAACGTGAATTCTATT 59.623 34.615 7.05 0.00 37.60 1.73
1769 3035 5.885912 ACATAAAGGGCAACGTGAATTCTAT 59.114 36.000 7.05 0.00 37.60 1.98
1770 3036 5.250200 ACATAAAGGGCAACGTGAATTCTA 58.750 37.500 7.05 0.00 37.60 2.10
1771 3037 4.079253 ACATAAAGGGCAACGTGAATTCT 58.921 39.130 7.05 0.00 37.60 2.40
1772 3038 4.434713 ACATAAAGGGCAACGTGAATTC 57.565 40.909 0.00 0.00 37.60 2.17
1773 3039 5.968528 TTACATAAAGGGCAACGTGAATT 57.031 34.783 0.00 0.00 37.60 2.17
1774 3040 7.817418 ATATTACATAAAGGGCAACGTGAAT 57.183 32.000 0.00 0.00 37.60 2.57
1775 3041 7.042590 CGTATATTACATAAAGGGCAACGTGAA 60.043 37.037 0.00 0.00 37.60 3.18
1776 3042 6.421501 CGTATATTACATAAAGGGCAACGTGA 59.578 38.462 0.00 0.00 37.60 4.35
1777 3043 6.201425 ACGTATATTACATAAAGGGCAACGTG 59.799 38.462 0.00 0.00 37.31 4.49
1778 3044 6.282930 ACGTATATTACATAAAGGGCAACGT 58.717 36.000 0.00 0.00 34.25 3.99
1779 3045 6.774354 ACGTATATTACATAAAGGGCAACG 57.226 37.500 0.00 0.00 37.60 4.10
1813 3079 3.705043 AAGGGTAATGCTACGTCTACG 57.295 47.619 0.00 0.04 46.33 3.51
1814 3080 4.040376 CGAAAGGGTAATGCTACGTCTAC 58.960 47.826 0.00 0.00 0.00 2.59
1815 3081 3.947196 TCGAAAGGGTAATGCTACGTCTA 59.053 43.478 0.00 0.00 0.00 2.59
1816 3082 2.756760 TCGAAAGGGTAATGCTACGTCT 59.243 45.455 0.00 0.00 0.00 4.18
1817 3083 3.114065 CTCGAAAGGGTAATGCTACGTC 58.886 50.000 0.00 0.00 0.00 4.34
1818 3084 3.160777 CTCGAAAGGGTAATGCTACGT 57.839 47.619 0.00 0.00 0.00 3.57
1829 3095 5.012328 AGCTTCTATGTAACTCGAAAGGG 57.988 43.478 0.00 0.00 37.84 3.95
1830 3096 8.784994 TCTATAGCTTCTATGTAACTCGAAAGG 58.215 37.037 0.00 0.00 0.00 3.11
1884 3265 6.445357 AGGGCGTAATAAATTTGGTAGTTG 57.555 37.500 0.00 0.00 0.00 3.16
1930 3315 3.449746 TTAATTGTTGGGTCAGAGGGG 57.550 47.619 0.00 0.00 0.00 4.79
1945 3331 8.609617 TCTACTCCATCCGATCCATATTAATT 57.390 34.615 0.00 0.00 0.00 1.40
1979 3365 8.028938 CACCACAAAAAGAAGAAGAAGAGAAAA 58.971 33.333 0.00 0.00 0.00 2.29
2065 3856 9.941325 ATTGATTTGAACATGCCTACAAAAATA 57.059 25.926 0.00 0.00 36.19 1.40
2067 3858 9.941325 ATATTGATTTGAACATGCCTACAAAAA 57.059 25.926 0.00 0.00 36.19 1.94
2068 3859 9.368674 CATATTGATTTGAACATGCCTACAAAA 57.631 29.630 0.00 0.00 36.19 2.44
2069 3860 7.492020 GCATATTGATTTGAACATGCCTACAAA 59.508 33.333 0.00 1.29 36.82 2.83
2079 3872 8.806429 TCTTAAGAGGCATATTGATTTGAACA 57.194 30.769 0.00 0.00 0.00 3.18
2152 3945 8.864069 TCAAAAATAAAGCGACAAATTCTGAA 57.136 26.923 0.00 0.00 0.00 3.02
2443 5181 6.371548 TGACAGGAACATTTCAGTAATAGTGC 59.628 38.462 0.00 0.00 0.00 4.40
2447 5185 9.952030 TTACATGACAGGAACATTTCAGTAATA 57.048 29.630 0.00 0.00 0.00 0.98
2452 5190 7.439157 TTCTTACATGACAGGAACATTTCAG 57.561 36.000 0.00 0.00 0.00 3.02
2454 5192 6.803807 GCTTTCTTACATGACAGGAACATTTC 59.196 38.462 0.00 0.00 0.00 2.17
2474 5212 3.829886 TCGAACATTGACATGGCTTTC 57.170 42.857 0.00 0.00 34.27 2.62
2485 5223 6.201615 ACATGATAGCTACACATCGAACATTG 59.798 38.462 0.00 4.21 0.00 2.82
2492 5230 4.864633 AGTGACATGATAGCTACACATCG 58.135 43.478 0.00 9.85 0.00 3.84
2494 5232 9.029368 ACATATAGTGACATGATAGCTACACAT 57.971 33.333 0.00 10.02 0.00 3.21
2495 5233 8.409358 ACATATAGTGACATGATAGCTACACA 57.591 34.615 0.00 8.37 0.00 3.72
2565 5311 4.029704 TGTCATTTTAACGTCGCACAAAC 58.970 39.130 0.00 0.00 0.00 2.93
2577 5323 7.876068 AGTCAGAGGTCGTATTTGTCATTTTAA 59.124 33.333 0.00 0.00 0.00 1.52
2579 5325 6.231211 AGTCAGAGGTCGTATTTGTCATTTT 58.769 36.000 0.00 0.00 0.00 1.82
2580 5326 5.794894 AGTCAGAGGTCGTATTTGTCATTT 58.205 37.500 0.00 0.00 0.00 2.32
2601 5347 7.945134 AGTTTTTGTTATTTGAGAGCATGAGT 58.055 30.769 0.00 0.00 0.00 3.41
2619 5365 6.074676 GCTAGTTGCATGAAACAGAGTTTTTG 60.075 38.462 18.97 0.00 42.31 2.44
2720 5727 8.928733 TCGTGTGTAAAGTTCCTATTAACAATC 58.071 33.333 0.00 0.00 0.00 2.67
2759 6185 8.841300 GGGGTTTCTCATTCAAATCTCTATTAC 58.159 37.037 0.00 0.00 0.00 1.89
2775 6201 3.955524 TTGTAAACTGGGGGTTTCTCA 57.044 42.857 0.00 0.00 43.87 3.27
2863 6447 3.509967 TCGCAGTGAGTTATTTCTCCAGA 59.490 43.478 0.00 0.00 33.93 3.86
3019 6901 7.367285 TCATTTTGTTGTAATAAGACAGTGCC 58.633 34.615 0.00 0.00 0.00 5.01
3057 6939 5.468746 TGCAAACAACTAAGTGACTATGGAC 59.531 40.000 0.00 0.00 0.00 4.02
3099 7080 3.552604 TGGTTTGTTCTTCTATTGCGC 57.447 42.857 0.00 0.00 0.00 6.09
3151 7132 8.492415 AGCCTGGATAATGACATACTAGTTAA 57.508 34.615 0.00 0.00 0.00 2.01
3152 7133 8.492415 AAGCCTGGATAATGACATACTAGTTA 57.508 34.615 0.00 0.00 0.00 2.24
3153 7134 7.380423 AAGCCTGGATAATGACATACTAGTT 57.620 36.000 0.00 0.00 0.00 2.24
3154 7135 7.380423 AAAGCCTGGATAATGACATACTAGT 57.620 36.000 0.00 0.00 0.00 2.57
3155 7136 6.587990 CGAAAGCCTGGATAATGACATACTAG 59.412 42.308 0.00 0.00 0.00 2.57
3156 7137 6.041637 ACGAAAGCCTGGATAATGACATACTA 59.958 38.462 0.00 0.00 0.00 1.82
3157 7138 5.163301 ACGAAAGCCTGGATAATGACATACT 60.163 40.000 0.00 0.00 0.00 2.12
3158 7139 5.057149 ACGAAAGCCTGGATAATGACATAC 58.943 41.667 0.00 0.00 0.00 2.39
3182 7215 2.551270 GCGGTGAGCGTGAACAAG 59.449 61.111 5.77 0.00 35.41 3.16
3323 7356 0.586319 CGATGTTGAAACGTGTGCCT 59.414 50.000 0.00 0.00 0.00 4.75
3437 7470 0.036765 TGTAGACAATGGCCGTGTCC 60.037 55.000 27.33 17.50 45.39 4.02
3562 7595 0.330267 GTAGGGGCTGCCCTTTGTTA 59.670 55.000 34.99 17.38 44.66 2.41
3671 7707 2.434185 GATGTCACGAAGGCGCCA 60.434 61.111 31.54 4.96 42.48 5.69
3678 7714 2.434185 GCTGCCGGATGTCACGAA 60.434 61.111 5.05 0.00 0.00 3.85
3698 7734 0.538746 AGGTTTTACTTGGTGCCCCG 60.539 55.000 0.00 0.00 0.00 5.73
3715 7751 4.439837 GCCAACTCTCTACGTACCTTAAGG 60.440 50.000 20.42 20.42 42.17 2.69
3732 7768 0.106918 TGTTCGGGAAACAGCCAACT 60.107 50.000 0.00 0.00 42.95 3.16
3733 7769 2.410466 TGTTCGGGAAACAGCCAAC 58.590 52.632 0.00 0.00 42.95 3.77
3734 7770 4.988744 TGTTCGGGAAACAGCCAA 57.011 50.000 0.00 0.00 42.95 4.52
3744 7841 3.072211 GGTAAAAAGTCTCCTGTTCGGG 58.928 50.000 0.00 0.00 0.00 5.14
3747 7844 4.998033 CCAGAGGTAAAAAGTCTCCTGTTC 59.002 45.833 0.00 0.00 0.00 3.18
3755 7852 7.754851 TTAACCAATCCAGAGGTAAAAAGTC 57.245 36.000 0.00 0.00 37.07 3.01
3759 7857 6.478129 ACGATTAACCAATCCAGAGGTAAAA 58.522 36.000 0.00 0.00 37.82 1.52
3762 7860 5.188163 TGAACGATTAACCAATCCAGAGGTA 59.812 40.000 0.00 0.00 37.82 3.08
3777 7883 8.175069 GCAAGAACAAGATACAATGAACGATTA 58.825 33.333 0.00 0.00 0.00 1.75
3821 7942 0.609681 TTGCTGCAGTGATCATGGCA 60.610 50.000 16.64 19.22 34.66 4.92
3837 7958 1.963338 AGCTGTCGCTTCCAGTTGC 60.963 57.895 0.00 0.00 46.47 4.17
3854 7975 1.450312 GCCTGATTCACCCCGTGAG 60.450 63.158 0.00 0.00 43.69 3.51
3857 7978 4.096003 CGGCCTGATTCACCCCGT 62.096 66.667 0.00 0.00 34.56 5.28
3858 7979 4.096003 ACGGCCTGATTCACCCCG 62.096 66.667 15.14 15.14 44.19 5.73
3941 8071 1.537814 TTATGCCGGACGACCACAGT 61.538 55.000 5.05 0.00 35.59 3.55
4084 8214 2.282783 GGGGTGGCCACAATGAACC 61.283 63.158 35.78 25.30 0.00 3.62
4136 8266 2.766651 GGGGTGCCGGTGATCCTA 60.767 66.667 1.90 0.00 0.00 2.94
4364 8521 1.417890 CTCCGTAGCATCTTGGGGAAT 59.582 52.381 0.00 0.00 0.00 3.01
4604 8761 2.489938 TCCTTGTCTACATTGCCACC 57.510 50.000 0.00 0.00 0.00 4.61
4627 8784 7.661127 ATTTTTCATGGACAAATCACACATG 57.339 32.000 0.00 0.00 40.06 3.21
4702 8859 5.005628 ACCCAATACACCCATTTTGTACT 57.994 39.130 0.00 0.00 32.30 2.73
4703 8860 6.181908 TCTACCCAATACACCCATTTTGTAC 58.818 40.000 0.00 0.00 32.30 2.90
4755 8912 8.919145 ACACCTTTTATTTACAAAATGGAGTCA 58.081 29.630 7.30 0.00 33.03 3.41
4825 8982 9.225201 CATGTCCTCACATAAAATTTGTATTCG 57.775 33.333 0.00 0.00 41.69 3.34
4845 9002 2.687370 GGTGGCACAAATTTCATGTCC 58.313 47.619 20.82 0.00 44.16 4.02
4856 9013 0.684805 AAAAGAACCCGGTGGCACAA 60.685 50.000 20.82 0.00 44.16 3.33
4864 9021 8.959705 AGAAGTATTTATCTAAAAGAACCCGG 57.040 34.615 0.00 0.00 0.00 5.73
4893 9050 8.740123 AATCCCAACACGTATCAATAATTACA 57.260 30.769 0.00 0.00 0.00 2.41
4902 9059 7.069702 TGGTAGTTATAATCCCAACACGTATCA 59.930 37.037 0.00 0.00 0.00 2.15
4917 9074 4.281688 GCGGGTCATACCTGGTAGTTATAA 59.718 45.833 12.78 0.00 44.90 0.98
4922 9079 1.047034 GGCGGGTCATACCTGGTAGT 61.047 60.000 12.78 0.00 44.90 2.73
5048 9342 3.118920 GCGGTTTACAATATTGGGCCTTT 60.119 43.478 19.37 0.06 0.00 3.11
5086 9380 6.456988 CGTCTTCATATGCCTTTCCTTACAAC 60.457 42.308 0.00 0.00 0.00 3.32
5093 9388 3.309954 GTGACGTCTTCATATGCCTTTCC 59.690 47.826 17.92 0.00 36.32 3.13
5379 10244 1.030457 CTTAGTCGTAGGGCCATCGT 58.970 55.000 6.18 0.00 0.00 3.73
5401 10266 2.292267 CGGCAGATGTCCTAGCAAAAT 58.708 47.619 0.00 0.00 0.00 1.82
5433 10298 4.643387 GGTGGGCGCCAACTGTCT 62.643 66.667 32.39 0.00 38.38 3.41
5469 10531 4.104383 TGCCCTTCAAGAACTCAAATCT 57.896 40.909 0.00 0.00 0.00 2.40
5515 10577 0.033796 CTTGGTCATCTGGCCCACAT 60.034 55.000 0.00 0.00 39.61 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.