AutoCloner

Multiple sequence alignment - TraesCS7A01G053000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G053000	chr7A	100.000	2492	0	0	1	2492	25748674	25751165	0.000000e+00	4602
1	TraesCS7A01G053000	chr7A	94.874	956	36	7	1541	2483	37722744	37721789	0.000000e+00	1482
2	TraesCS7A01G053000	chr7A	91.199	1034	69	4	499	1531	37723801	37722789	0.000000e+00	1386
3	TraesCS7A01G053000	chr7A	89.837	492	48	2	2000	2490	26033385	26032895	4.520000e-177	630
4	TraesCS7A01G053000	chr7A	88.086	512	60	1	1978	2488	26045825	26045314	7.620000e-170	606
5	TraesCS7A01G053000	chr7A	87.551	490	34	9	1	465	25691487	25691974	2.180000e-150	542
6	TraesCS7A01G053000	chr7A	85.944	498	37	15	1	468	37724287	37723793	3.700000e-138	501
7	TraesCS7A01G053000	chr7A	91.642	335	20	3	496	830	25691966	25692292	8.120000e-125	457
8	TraesCS7A01G053000	chr4A	95.530	783	33	2	292	1073	708615862	708615081	0.000000e+00	1251
9	TraesCS7A01G053000	chr4A	89.259	931	72	17	1580	2492	708614751	708613831	0.000000e+00	1140
10	TraesCS7A01G053000	chr4A	95.623	297	13	0	1	297	708616182	708615886	6.240000e-131	477
11	TraesCS7A01G053000	chr7D	95.530	783	32	3	292	1073	24944378	24945158	0.000000e+00	1249
12	TraesCS7A01G053000	chr7D	95.541	628	19	4	1861	2487	24945580	24946199	0.000000e+00	996
13	TraesCS7A01G053000	chr7D	88.821	492	53	2	2000	2490	25192566	25192076	9.860000e-169	603
14	TraesCS7A01G053000	chr7D	88.115	488	58	0	2000	2487	25273563	25273076	4.620000e-162	580
15	TraesCS7A01G053000	chr7D	94.667	300	13	1	1	297	24944055	24944354	1.750000e-126	462
16	TraesCS7A01G053000	chr7D	78.388	273	59	0	823	1095	101779913	101780185	7.080000e-41	178
17	TraesCS7A01G053000	chr6B	91.737	714	28	10	1810	2492	125729826	125729113	0.000000e+00	963
18	TraesCS7A01G053000	chr6B	84.021	194	31	0	902	1095	626645216	626645023	1.180000e-43	187
19	TraesCS7A01G053000	chr6D	95.508	512	19	2	1977	2485	55895643	55895133	0.000000e+00	815
20	TraesCS7A01G053000	chr6D	82.511	223	39	0	873	1095	417750755	417750977	1.960000e-46	196
21	TraesCS7A01G053000	chr6D	84.021	194	31	0	902	1095	417777137	417776944	1.180000e-43	187
22	TraesCS7A01G053000	chr6A	89.583	240	19	4	1745	1978	69927983	69927744	1.450000e-77	300
23	TraesCS7A01G053000	chr6A	78.788	330	50	8	898	1207	560191581	560191910	1.170000e-48	204
24	TraesCS7A01G053000	chr3D	83.590	195	32	0	901	1095	17699565	17699371	1.520000e-42	183

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G053000	chr7A	25748674	25751165	2491	False	4602.000000	4602	100.000000	1	2492	1	chr7A.!!$F1	2491
1	TraesCS7A01G053000	chr7A	37721789	37724287	2498	True	1123.000000	1482	90.672333	1	2483	3	chr7A.!!$R3	2482
2	TraesCS7A01G053000	chr7A	26045314	26045825	511	True	606.000000	606	88.086000	1978	2488	1	chr7A.!!$R2	510
3	TraesCS7A01G053000	chr7A	25691487	25692292	805	False	499.500000	542	89.596500	1	830	2	chr7A.!!$F2	829
4	TraesCS7A01G053000	chr4A	708613831	708616182	2351	True	956.000000	1251	93.470667	1	2492	3	chr4A.!!$R1	2491
5	TraesCS7A01G053000	chr7D	24944055	24946199	2144	False	902.333333	1249	95.246000	1	2487	3	chr7D.!!$F2	2486
6	TraesCS7A01G053000	chr6B	125729113	125729826	713	True	963.000000	963	91.737000	1810	2492	1	chr6B.!!$R1	682
7	TraesCS7A01G053000	chr6D	55895133	55895643	510	True	815.000000	815	95.508000	1977	2485	1	chr6D.!!$R1	508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
421	455	1.044790	CAGGCCACATCCAAATCCCC	61.045	60.0	5.01	0.0	0.00	4.81	F
1212	1285	0.030195	TGGAGGGCCAGGTCATCATA	60.030	55.0	8.24	0.0	39.92	2.15	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1481	1593	0.190069	TAGGACACCTCACACCTGGT	59.810	55.000	0.0	0.0	34.61	4.00	R
2202	2544	4.152647	TGTCAGGCTATGTGGTCTATAGG	58.847	47.826	0.0	0.0	0.00	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
138	142	8.409358	AATATATGTGATAAAAAGGACCCTGC	57.591	34.615	0.00	0.00	0.00	4.85
158	162	4.948847	TGCTGATCAGAAGCACGTATATT	58.051	39.130	27.04	0.00	45.50	1.28
170	174	4.283467	AGCACGTATATTATTCTGCTCCCA	59.717	41.667	0.00	0.00	28.77	4.37
256	260	1.134401	TCCCGCAGATTCATCTCAACC	60.134	52.381	0.00	0.00	34.22	3.77
421	455	1.044790	CAGGCCACATCCAAATCCCC	61.045	60.000	5.01	0.00	0.00	4.81
456	490	8.725148	CATAAGAAGTAAACCATATGATGAGGC	58.275	37.037	3.65	0.00	0.00	4.70
462	534	7.573710	AGTAAACCATATGATGAGGCACTAAA	58.426	34.615	3.65	0.00	41.55	1.85
463	535	8.052748	AGTAAACCATATGATGAGGCACTAAAA	58.947	33.333	3.65	0.00	41.55	1.52
464	536	7.716799	AAACCATATGATGAGGCACTAAAAA	57.283	32.000	3.65	0.00	41.55	1.94
484	556	5.746990	AAAATACTCCCTCCGATCCATAG	57.253	43.478	0.00	0.00	0.00	2.23
485	557	4.405756	AATACTCCCTCCGATCCATAGT	57.594	45.455	0.00	0.00	0.00	2.12
486	558	5.531753	AATACTCCCTCCGATCCATAGTA	57.468	43.478	0.00	0.00	0.00	1.82
487	559	5.735733	ATACTCCCTCCGATCCATAGTAT	57.264	43.478	0.00	0.00	0.00	2.12
488	560	3.702792	ACTCCCTCCGATCCATAGTATG	58.297	50.000	2.90	2.90	0.00	2.39
489	561	3.076182	ACTCCCTCCGATCCATAGTATGT	59.924	47.826	9.28	0.00	0.00	2.29
490	562	3.431415	TCCCTCCGATCCATAGTATGTG	58.569	50.000	9.28	1.46	0.00	3.21
491	563	3.165875	CCCTCCGATCCATAGTATGTGT	58.834	50.000	9.28	0.00	0.00	3.72
492	564	3.193691	CCCTCCGATCCATAGTATGTGTC	59.806	52.174	9.28	5.83	0.00	3.67
493	565	3.826729	CCTCCGATCCATAGTATGTGTCA	59.173	47.826	9.28	0.00	0.00	3.58
494	566	4.464244	CCTCCGATCCATAGTATGTGTCAT	59.536	45.833	9.28	0.00	0.00	3.06
495	567	5.391312	TCCGATCCATAGTATGTGTCATG	57.609	43.478	9.28	0.00	0.00	3.07
496	568	4.220602	TCCGATCCATAGTATGTGTCATGG	59.779	45.833	9.28	3.82	39.48	3.66
497	569	4.021104	CCGATCCATAGTATGTGTCATGGT	60.021	45.833	9.28	0.00	39.21	3.55
498	570	5.511373	CCGATCCATAGTATGTGTCATGGTT	60.511	44.000	9.28	0.00	39.21	3.67
499	571	6.295067	CCGATCCATAGTATGTGTCATGGTTA	60.295	42.308	9.28	0.00	39.21	2.85
500	572	7.151976	CGATCCATAGTATGTGTCATGGTTAA	58.848	38.462	9.28	0.00	39.21	2.01
899	972	1.298014	GGAGTTCCCTGCCTGTCTG	59.702	63.158	0.00	0.00	0.00	3.51
932	1005	1.501582	AGCCTAACCTTAGCCTCCAG	58.498	55.000	0.00	0.00	0.00	3.86
1036	1109	3.914605	CTGTGCTCCGCGTACAGCA	62.915	63.158	17.73	17.73	46.73	4.41
1061	1134	0.034756	CCCAACATCGACACACCAGA	59.965	55.000	0.00	0.00	0.00	3.86
1113	1186	4.052518	GGCCCTGTGGTGGAGCAT	62.053	66.667	0.00	0.00	0.00	3.79
1141	1214	4.947147	GGTGCCCACCGCTTGACA	62.947	66.667	1.07	0.00	42.29	3.58
1144	1217	2.904866	GCCCACCGCTTGACAACA	60.905	61.111	0.00	0.00	0.00	3.33
1163	1236	2.897172	AAGCCCACAACCGTCGGTTT	62.897	55.000	26.87	15.19	44.33	3.27
1164	1237	3.027292	CCCACAACCGTCGGTTTG	58.973	61.111	26.87	23.91	44.33	2.93
1210	1283	2.124768	TGGAGGGCCAGGTCATCA	59.875	61.111	8.24	0.00	39.92	3.07
1212	1285	0.030195	TGGAGGGCCAGGTCATCATA	60.030	55.000	8.24	0.00	39.92	2.15
1326	1399	1.649664	CCGAAGCAGAGGAACATGAG	58.350	55.000	0.00	0.00	0.00	2.90
1327	1400	1.649664	CGAAGCAGAGGAACATGAGG	58.350	55.000	0.00	0.00	0.00	3.86
1335	1408	1.675641	GGAACATGAGGCTGCGGTT	60.676	57.895	0.00	0.00	0.00	4.44
1337	1410	0.955428	GAACATGAGGCTGCGGTTCA	60.955	55.000	0.00	4.66	38.14	3.18
1338	1411	0.957395	AACATGAGGCTGCGGTTCAG	60.957	55.000	0.00	0.00	45.62	3.02
1348	1421	3.411351	CGGTTCAGTTGCCCGTCG	61.411	66.667	0.00	0.00	37.00	5.12
1349	1422	2.029964	GGTTCAGTTGCCCGTCGA	59.970	61.111	0.00	0.00	0.00	4.20
1431	1543	2.758979	ACCTGACATAGTACAACGGAGG	59.241	50.000	0.00	0.00	0.00	4.30
1459	1571	2.892425	CCGGGCAGAAGATGTCGC	60.892	66.667	0.00	0.00	32.79	5.19
1464	1576	1.141019	GCAGAAGATGTCGCGGGTA	59.859	57.895	6.13	0.00	0.00	3.69
1481	1593	3.728076	GGTACCTGATGTATCTTGCGA	57.272	47.619	4.06	0.00	0.00	5.10
1528	1640	2.100087	AGCTAGCTCTTCCTTCTTACGC	59.900	50.000	12.68	0.00	0.00	4.42
1531	1643	2.452505	AGCTCTTCCTTCTTACGCTCT	58.547	47.619	0.00	0.00	0.00	4.09
1532	1644	3.622630	AGCTCTTCCTTCTTACGCTCTA	58.377	45.455	0.00	0.00	0.00	2.43
1533	1645	3.630312	AGCTCTTCCTTCTTACGCTCTAG	59.370	47.826	0.00	0.00	0.00	2.43
1534	1646	3.794138	GCTCTTCCTTCTTACGCTCTAGC	60.794	52.174	0.00	0.00	37.78	3.42
1535	1647	3.622630	TCTTCCTTCTTACGCTCTAGCT	58.377	45.455	0.00	0.00	39.32	3.32
1536	1648	4.778579	TCTTCCTTCTTACGCTCTAGCTA	58.221	43.478	0.00	0.00	39.32	3.32
1537	1649	4.817464	TCTTCCTTCTTACGCTCTAGCTAG	59.183	45.833	15.01	15.01	39.32	3.42
1837	2148	1.776662	ACGAATAGGCAGTGCTCCTA	58.223	50.000	16.11	9.29	40.20	2.94
1939	2252	2.732844	TACATTGATCCCTGCATGCA	57.267	45.000	21.29	21.29	0.00	3.96
1940	2253	1.399714	ACATTGATCCCTGCATGCAG	58.600	50.000	35.88	35.88	43.26	4.41
1966	2280	4.405358	TGGGACTTTCAATTTCTGCAAACT	59.595	37.500	0.00	0.00	0.00	2.66
2178	2520	4.418392	CACCTGAAAGCAGATAATTGTGC	58.582	43.478	0.00	2.00	45.17	4.57
2202	2544	1.080974	CCACCAGTCACGTCGGTAC	60.081	63.158	0.00	0.00	0.00	3.34
2259	2601	7.283127	ACAAATATCCATGTGATGTAGTTGACC	59.717	37.037	11.03	0.00	34.76	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
65	66	7.981789	ACTCGTATCATCATCAACAACAATACT	59.018	33.333	0.00	0.00	0.00	2.12
138	142	8.858186	CAGAATAATATACGTGCTTCTGATCAG	58.142	37.037	17.07	17.07	41.16	2.90
158	162	1.571955	TGCTGACTGGGAGCAGAATA	58.428	50.000	0.00	0.00	41.56	1.75
170	174	0.037139	CAAGAGCTGAGCTGCTGACT	60.037	55.000	13.71	0.00	44.17	3.41
256	260	3.815809	TGTTTTACCAGTTCCTCCTGTG	58.184	45.455	0.00	0.00	0.00	3.66
462	534	5.155905	ACTATGGATCGGAGGGAGTATTTT	58.844	41.667	0.00	0.00	0.00	1.82
463	535	4.753186	ACTATGGATCGGAGGGAGTATTT	58.247	43.478	0.00	0.00	0.00	1.40
464	536	4.405756	ACTATGGATCGGAGGGAGTATT	57.594	45.455	0.00	0.00	0.00	1.89
465	537	5.044030	ACATACTATGGATCGGAGGGAGTAT	60.044	44.000	1.11	0.00	33.60	2.12
466	538	4.291513	ACATACTATGGATCGGAGGGAGTA	59.708	45.833	1.11	0.00	33.60	2.59
467	539	3.076182	ACATACTATGGATCGGAGGGAGT	59.924	47.826	1.11	0.00	33.60	3.85
468	540	3.445450	CACATACTATGGATCGGAGGGAG	59.555	52.174	1.11	0.00	33.60	4.30
469	541	3.181422	ACACATACTATGGATCGGAGGGA	60.181	47.826	1.11	0.00	33.60	4.20
470	542	3.165875	ACACATACTATGGATCGGAGGG	58.834	50.000	1.11	0.00	33.60	4.30
471	543	3.826729	TGACACATACTATGGATCGGAGG	59.173	47.826	1.11	0.00	33.60	4.30
472	544	5.405797	CATGACACATACTATGGATCGGAG	58.594	45.833	1.11	0.00	33.60	4.63
473	545	4.220602	CCATGACACATACTATGGATCGGA	59.779	45.833	0.00	0.00	42.05	4.55
474	546	4.021104	ACCATGACACATACTATGGATCGG	60.021	45.833	8.93	0.00	42.05	4.18
475	547	5.139435	ACCATGACACATACTATGGATCG	57.861	43.478	8.93	0.00	42.05	3.69
476	548	8.902540	TTTAACCATGACACATACTATGGATC	57.097	34.615	8.93	0.00	42.05	3.36
477	549	8.713971	TCTTTAACCATGACACATACTATGGAT	58.286	33.333	8.93	0.14	42.05	3.41
478	550	8.084985	TCTTTAACCATGACACATACTATGGA	57.915	34.615	8.93	0.00	42.05	3.41
479	551	7.987458	ACTCTTTAACCATGACACATACTATGG	59.013	37.037	0.00	0.00	44.38	2.74
480	552	8.948631	ACTCTTTAACCATGACACATACTATG	57.051	34.615	0.00	0.00	0.00	2.23
482	554	8.692710	CCTACTCTTTAACCATGACACATACTA	58.307	37.037	0.00	0.00	0.00	1.82
483	555	7.399191	TCCTACTCTTTAACCATGACACATACT	59.601	37.037	0.00	0.00	0.00	2.12
484	556	7.491696	GTCCTACTCTTTAACCATGACACATAC	59.508	40.741	0.00	0.00	0.00	2.39
485	557	7.553334	GTCCTACTCTTTAACCATGACACATA	58.447	38.462	0.00	0.00	0.00	2.29
486	558	6.407202	GTCCTACTCTTTAACCATGACACAT	58.593	40.000	0.00	0.00	0.00	3.21
487	559	5.566032	CGTCCTACTCTTTAACCATGACACA	60.566	44.000	0.00	0.00	0.00	3.72
488	560	4.863131	CGTCCTACTCTTTAACCATGACAC	59.137	45.833	0.00	0.00	0.00	3.67
489	561	4.525487	ACGTCCTACTCTTTAACCATGACA	59.475	41.667	0.00	0.00	0.00	3.58
490	562	5.069501	ACGTCCTACTCTTTAACCATGAC	57.930	43.478	0.00	0.00	0.00	3.06
491	563	5.733620	AACGTCCTACTCTTTAACCATGA	57.266	39.130	0.00	0.00	0.00	3.07
492	564	5.061808	CGAAACGTCCTACTCTTTAACCATG	59.938	44.000	0.00	0.00	0.00	3.66
493	565	5.166398	CGAAACGTCCTACTCTTTAACCAT	58.834	41.667	0.00	0.00	0.00	3.55
494	566	4.037923	ACGAAACGTCCTACTCTTTAACCA	59.962	41.667	0.00	0.00	33.69	3.67
495	567	4.550422	ACGAAACGTCCTACTCTTTAACC	58.450	43.478	0.00	0.00	33.69	2.85
496	568	5.687285	TGAACGAAACGTCCTACTCTTTAAC	59.313	40.000	0.00	0.00	39.99	2.01
497	569	5.830912	TGAACGAAACGTCCTACTCTTTAA	58.169	37.500	0.00	0.00	39.99	1.52
498	570	5.437289	TGAACGAAACGTCCTACTCTTTA	57.563	39.130	0.00	0.00	39.99	1.85
499	571	4.311816	TGAACGAAACGTCCTACTCTTT	57.688	40.909	0.00	0.00	39.99	2.52
500	572	3.996150	TGAACGAAACGTCCTACTCTT	57.004	42.857	0.00	0.00	39.99	2.85
559	632	5.646577	TTACACTAGTTCTCAGGAAGCTC	57.353	43.478	0.00	0.00	31.46	4.09
899	972	1.204146	TAGGCTTGTGATGGAGTCCC	58.796	55.000	6.74	0.00	0.00	4.46
966	1039	1.300233	GATCGCGGTGGAGATGGTC	60.300	63.158	6.13	0.00	32.46	4.02
1036	1109	2.045926	GTCGATGTTGGGCTGGCT	60.046	61.111	0.00	0.00	0.00	4.75
1061	1134	1.639635	GGTGCTGGAGGGGATCATGT	61.640	60.000	0.00	0.00	0.00	3.21
1139	1212	1.379309	ACGGTTGTGGGCTTGTTGT	60.379	52.632	0.00	0.00	0.00	3.32
1140	1213	1.358759	GACGGTTGTGGGCTTGTTG	59.641	57.895	0.00	0.00	0.00	3.33
1141	1214	2.184167	CGACGGTTGTGGGCTTGTT	61.184	57.895	0.00	0.00	0.00	2.83
1144	1217	2.897172	AAACCGACGGTTGTGGGCTT	62.897	55.000	31.69	12.40	46.20	4.35
1150	1223	1.890510	GGAGCAAACCGACGGTTGT	60.891	57.895	31.69	19.47	46.20	3.32
1153	1226	2.280592	GTGGAGCAAACCGACGGT	60.281	61.111	15.37	15.37	37.65	4.83
1163	1236	3.319198	GGAGGGGTTCGTGGAGCA	61.319	66.667	0.00	0.00	0.00	4.26
1164	1237	4.452733	CGGAGGGGTTCGTGGAGC	62.453	72.222	0.00	0.00	0.00	4.70
1199	1272	2.939103	GTGTCAACTATGATGACCTGGC	59.061	50.000	4.40	0.00	45.19	4.85
1202	1275	5.337894	CCAAGAGTGTCAACTATGATGACCT	60.338	44.000	4.40	1.79	45.19	3.85
1207	1280	3.846588	ACCCCAAGAGTGTCAACTATGAT	59.153	43.478	0.00	0.00	38.01	2.45
1210	1283	3.515901	GAGACCCCAAGAGTGTCAACTAT	59.484	47.826	0.00	0.00	36.52	2.12
1212	1285	1.694696	GAGACCCCAAGAGTGTCAACT	59.305	52.381	0.00	0.00	40.21	3.16
1255	1328	3.830679	GATCAGGGAGATCGCCATC	57.169	57.895	17.90	8.07	43.40	3.51
1337	1410	4.681978	GTGGCTCGACGGGCAACT	62.682	66.667	23.22	0.00	43.18	3.16
1448	1560	0.683504	AGGTACCCGCGACATCTTCT	60.684	55.000	8.23	0.00	0.00	2.85
1459	1571	2.755650	GCAAGATACATCAGGTACCCG	58.244	52.381	8.74	0.00	34.07	5.28
1478	1590	2.357517	CACCTCACACCTGGTCGC	60.358	66.667	0.00	0.00	33.75	5.19
1479	1591	1.006102	GACACCTCACACCTGGTCG	60.006	63.158	0.00	0.00	33.75	4.79
1481	1593	0.190069	TAGGACACCTCACACCTGGT	59.810	55.000	0.00	0.00	34.61	4.00
1531	1643	7.159372	GGCATTACCAATAAAGCTACTAGCTA	58.841	38.462	11.10	0.00	45.21	3.32
1532	1644	5.998363	GGCATTACCAATAAAGCTACTAGCT	59.002	40.000	4.60	4.60	47.00	3.32
1533	1645	5.181433	GGGCATTACCAATAAAGCTACTAGC	59.819	44.000	0.00	0.00	42.05	3.42
1534	1646	6.534634	AGGGCATTACCAATAAAGCTACTAG	58.465	40.000	0.00	0.00	42.05	2.57
1535	1647	6.509523	AGGGCATTACCAATAAAGCTACTA	57.490	37.500	0.00	0.00	42.05	1.82
1536	1648	5.388599	AGGGCATTACCAATAAAGCTACT	57.611	39.130	0.00	0.00	42.05	2.57
1537	1649	5.359860	ACAAGGGCATTACCAATAAAGCTAC	59.640	40.000	0.00	0.00	42.05	3.58
1689	1984	7.402862	ACCAAGTACTATTCCAGCTTGTAAAT	58.597	34.615	0.00	0.00	35.94	1.40
1806	2109	6.093495	CACTGCCTATTCGTTAAGATGGAAAA	59.907	38.462	0.00	0.00	0.00	2.29
1807	2110	5.584649	CACTGCCTATTCGTTAAGATGGAAA	59.415	40.000	0.00	0.00	0.00	3.13
1808	2111	5.116180	CACTGCCTATTCGTTAAGATGGAA	58.884	41.667	0.00	0.00	0.00	3.53
1939	2252	3.321968	GCAGAAATTGAAAGTCCCAACCT	59.678	43.478	0.00	0.00	0.00	3.50
1940	2253	3.069443	TGCAGAAATTGAAAGTCCCAACC	59.931	43.478	0.00	0.00	0.00	3.77
1946	2259	4.746611	CCCAGTTTGCAGAAATTGAAAGTC	59.253	41.667	0.00	0.00	31.98	3.01
1966	2280	1.361197	TCCTCATGTCTGGTAGTCCCA	59.639	52.381	0.00	0.00	42.51	4.37
2178	2520	4.742201	CGTGACTGGTGGGAGCGG	62.742	72.222	0.00	0.00	0.00	5.52
2202	2544	4.152647	TGTCAGGCTATGTGGTCTATAGG	58.847	47.826	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.