Multiple sequence alignment - TraesCS7A01G051900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G051900 chr7A 100.000 2616 0 0 2787 5402 25103004 25105619 0.000000e+00 4831.0
1 TraesCS7A01G051900 chr7A 100.000 2497 0 0 1 2497 25100218 25102714 0.000000e+00 4612.0
2 TraesCS7A01G051900 chr7A 81.405 484 75 14 246 723 559401828 559402302 1.100000e-101 381.0
3 TraesCS7A01G051900 chr7A 82.090 134 24 0 4858 4991 221218024 221218157 1.230000e-21 115.0
4 TraesCS7A01G051900 chr7A 100.000 30 0 0 4684 4713 232753388 232753417 7.560000e-04 56.5
5 TraesCS7A01G051900 chr4A 94.313 2198 93 18 246 2436 708701986 708699814 0.000000e+00 3338.0
6 TraesCS7A01G051900 chr4A 90.832 1298 74 11 4127 5402 708699266 708697992 0.000000e+00 1696.0
7 TraesCS7A01G051900 chr4A 96.759 432 14 0 3027 3458 708699707 708699276 0.000000e+00 721.0
8 TraesCS7A01G051900 chrUn 95.587 1745 49 14 760 2497 90067410 90065687 0.000000e+00 2771.0
9 TraesCS7A01G051900 chrUn 96.786 1587 47 4 2787 4372 90065291 90063708 0.000000e+00 2645.0
10 TraesCS7A01G051900 chrUn 91.333 450 38 1 246 694 90068103 90067654 9.940000e-172 614.0
11 TraesCS7A01G051900 chrUn 93.902 246 15 0 1 246 64898897 64899142 6.610000e-99 372.0
12 TraesCS7A01G051900 chrUn 93.902 246 15 0 1 246 311127230 311127475 6.610000e-99 372.0
13 TraesCS7A01G051900 chrUn 97.059 34 1 0 2074 2107 97741714 97741681 2.100000e-04 58.4
14 TraesCS7A01G051900 chr5D 82.952 481 73 9 246 724 315675348 315675821 5.000000e-115 425.0
15 TraesCS7A01G051900 chr5D 83.824 136 22 0 4861 4996 29645159 29645024 4.390000e-26 130.0
16 TraesCS7A01G051900 chr6D 82.636 478 76 7 246 721 288632822 288632350 3.010000e-112 416.0
17 TraesCS7A01G051900 chr5A 80.645 527 91 10 246 763 379403570 379403046 1.090000e-106 398.0
18 TraesCS7A01G051900 chr5A 93.200 250 15 2 1 248 73071358 73071109 3.070000e-97 366.0
19 TraesCS7A01G051900 chr5A 93.145 248 17 0 1 248 543503730 543503483 1.110000e-96 364.0
20 TraesCS7A01G051900 chr5A 76.522 345 63 11 4865 5207 316099740 316099412 7.190000e-39 172.0
21 TraesCS7A01G051900 chr5A 83.893 149 24 0 4858 5006 42252200 42252348 5.640000e-30 143.0
22 TraesCS7A01G051900 chr5A 100.000 30 0 0 4684 4713 509721967 509721938 7.560000e-04 56.5
23 TraesCS7A01G051900 chr2A 94.758 248 13 0 1 248 178010734 178010981 2.360000e-103 387.0
24 TraesCS7A01G051900 chr7D 81.780 472 71 14 246 712 343934104 343934565 1.100000e-101 381.0
25 TraesCS7A01G051900 chr7D 88.571 105 11 1 5078 5182 480012496 480012393 5.680000e-25 126.0
26 TraesCS7A01G051900 chr7D 78.125 192 31 4 5078 5265 437202068 437202252 1.590000e-20 111.0
27 TraesCS7A01G051900 chr4B 81.381 478 79 10 246 722 519610685 519610217 1.100000e-101 381.0
28 TraesCS7A01G051900 chr3A 93.600 250 14 2 1 248 290584131 290583882 6.610000e-99 372.0
29 TraesCS7A01G051900 chr3A 88.889 99 11 0 5078 5176 357114960 357114862 7.350000e-24 122.0
30 TraesCS7A01G051900 chr3A 80.263 152 27 2 5096 5245 232280005 232279855 1.590000e-20 111.0
31 TraesCS7A01G051900 chr3A 85.185 81 12 0 4087 4167 684592882 684592802 3.470000e-12 84.2
32 TraesCS7A01G051900 chr3A 93.750 48 3 0 5248 5295 263707572 263707619 7.510000e-09 73.1
33 TraesCS7A01G051900 chr3A 93.750 48 3 0 5254 5301 409422745 409422698 7.510000e-09 73.1
34 TraesCS7A01G051900 chr4D 80.793 479 79 12 246 721 188753372 188753840 3.980000e-96 363.0
35 TraesCS7A01G051900 chr4D 81.988 161 25 3 5087 5245 47728376 47728534 3.390000e-27 134.0
36 TraesCS7A01G051900 chr4D 94.340 53 1 2 2053 2105 210457815 210457865 4.490000e-11 80.5
37 TraesCS7A01G051900 chr1B 80.753 478 81 10 246 719 214003800 214003330 3.980000e-96 363.0
38 TraesCS7A01G051900 chr1B 80.000 160 20 5 5078 5235 518243090 518242941 2.060000e-19 108.0
39 TraesCS7A01G051900 chr1B 100.000 28 0 0 4686 4713 413201370 413201343 1.000000e-02 52.8
40 TraesCS7A01G051900 chr1A 93.145 248 15 2 1 246 269150067 269149820 3.980000e-96 363.0
41 TraesCS7A01G051900 chr6A 93.089 246 17 0 1 246 566947759 566947514 1.430000e-95 361.0
42 TraesCS7A01G051900 chr6A 93.089 246 16 1 1 246 428914963 428915207 5.140000e-95 359.0
43 TraesCS7A01G051900 chr6A 81.752 137 23 2 4871 5007 480039129 480038995 4.420000e-21 113.0
44 TraesCS7A01G051900 chr6A 100.000 28 0 0 4686 4713 602671626 602671599 1.000000e-02 52.8
45 TraesCS7A01G051900 chr3D 87.826 115 14 0 5078 5192 515956591 515956705 9.440000e-28 135.0
46 TraesCS7A01G051900 chr3D 88.776 98 11 0 5082 5179 140432369 140432272 2.640000e-23 121.0
47 TraesCS7A01G051900 chr3D 89.831 59 5 1 2050 2107 375212322 375212264 2.090000e-09 75.0
48 TraesCS7A01G051900 chr3D 96.875 32 1 0 4682 4713 281910161 281910192 3.000000e-03 54.7
49 TraesCS7A01G051900 chr3D 100.000 28 0 0 4686 4713 406411835 406411808 1.000000e-02 52.8
50 TraesCS7A01G051900 chr1D 87.395 119 13 2 5094 5210 466112969 466112851 9.440000e-28 135.0
51 TraesCS7A01G051900 chr2B 76.329 207 39 9 4858 5058 104229076 104229278 9.570000e-18 102.0
52 TraesCS7A01G051900 chr2B 100.000 28 0 0 4686 4713 170851475 170851448 1.000000e-02 52.8
53 TraesCS7A01G051900 chr3B 95.556 45 2 0 2063 2107 489362885 489362841 7.510000e-09 73.1
54 TraesCS7A01G051900 chr7B 88.679 53 6 0 2032 2084 724716770 724716718 1.260000e-06 65.8
55 TraesCS7A01G051900 chr7B 89.130 46 3 2 2061 2105 164586205 164586161 7.560000e-04 56.5
56 TraesCS7A01G051900 chr2D 80.435 92 10 7 2019 2108 648576351 648576266 4.520000e-06 63.9
57 TraesCS7A01G051900 chr2D 100.000 28 0 0 2078 2105 18875674 18875647 1.000000e-02 52.8
58 TraesCS7A01G051900 chr2D 86.957 46 6 0 2018 2063 69267925 69267880 1.000000e-02 52.8
59 TraesCS7A01G051900 chr6B 94.286 35 2 0 4679 4713 710350609 710350575 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G051900 chr7A 25100218 25105619 5401 False 4721.500000 4831 100.000000 1 5402 2 chr7A.!!$F4 5401
1 TraesCS7A01G051900 chr4A 708697992 708701986 3994 True 1918.333333 3338 93.968000 246 5402 3 chr4A.!!$R1 5156
2 TraesCS7A01G051900 chrUn 90063708 90068103 4395 True 2010.000000 2771 94.568667 246 4372 3 chrUn.!!$R2 4126
3 TraesCS7A01G051900 chr5A 379403046 379403570 524 True 398.000000 398 80.645000 246 763 1 chr5A.!!$R3 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.036294 GAAGAGTGTGCCCCAGTACC 60.036 60.0 0.00 0.0 0.00 3.34 F
748 760 0.038526 CACCGGCGTGAGAGTAAACT 60.039 55.0 6.01 0.0 43.14 2.66 F
1765 1953 0.450983 ACGTAGCAACTACTCCGAGC 59.549 55.0 0.00 0.0 35.06 5.03 F
2484 2693 0.250858 TGAACACCCAGCCAGTGATG 60.251 55.0 5.46 0.0 38.63 3.07 F
3900 4216 0.616891 TCATGCAGGCATCACTCACT 59.383 50.0 3.30 0.0 33.90 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1843 0.605589 CCAAGAGAGCTTCAGACCGT 59.394 55.000 0.00 0.00 30.14 4.83 R
2148 2344 1.176527 CCGTCCATTTGGTGCAGAAT 58.823 50.000 0.00 0.00 36.34 2.40 R
3617 3933 0.108138 GGCTGCTGACGACTTATGGT 60.108 55.000 0.00 0.00 0.00 3.55 R
4362 4678 1.607767 CCGGCTTGTTTGGGGAAATTG 60.608 52.381 0.00 0.00 0.00 2.32 R
4752 5068 0.246635 ACATGTTCTCCTCGGTTCCG 59.753 55.000 4.74 4.74 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.160822 AAATCCTCAGATCGCCATCG 57.839 50.000 0.00 0.00 33.75 3.84
24 25 0.319728 AATCCTCAGATCGCCATCGG 59.680 55.000 0.00 0.00 33.75 4.18
25 26 2.164865 ATCCTCAGATCGCCATCGGC 62.165 60.000 0.00 0.00 46.75 5.54
36 37 2.759783 CCATCGGCAGAACACTGAG 58.240 57.895 0.00 0.00 33.94 3.35
37 38 0.742281 CCATCGGCAGAACACTGAGG 60.742 60.000 0.00 0.00 33.94 3.86
38 39 1.078848 ATCGGCAGAACACTGAGGC 60.079 57.895 0.00 0.00 33.94 4.70
39 40 2.527951 ATCGGCAGAACACTGAGGCC 62.528 60.000 0.00 0.00 41.20 5.19
40 41 2.360475 GGCAGAACACTGAGGCCC 60.360 66.667 0.00 0.00 38.70 5.80
41 42 2.743928 GCAGAACACTGAGGCCCG 60.744 66.667 0.00 0.00 33.94 6.13
42 43 3.059982 CAGAACACTGAGGCCCGA 58.940 61.111 0.00 0.00 33.94 5.14
43 44 1.374758 CAGAACACTGAGGCCCGAC 60.375 63.158 0.00 0.00 33.94 4.79
44 45 2.047179 GAACACTGAGGCCCGACC 60.047 66.667 0.00 0.00 39.61 4.79
45 46 2.847234 AACACTGAGGCCCGACCA 60.847 61.111 0.00 0.00 43.14 4.02
46 47 2.788191 GAACACTGAGGCCCGACCAG 62.788 65.000 0.00 4.72 43.14 4.00
47 48 4.087892 CACTGAGGCCCGACCAGG 62.088 72.222 0.00 0.00 43.14 4.45
48 49 4.316823 ACTGAGGCCCGACCAGGA 62.317 66.667 0.00 0.00 45.00 3.86
49 50 3.465403 CTGAGGCCCGACCAGGAG 61.465 72.222 0.00 0.00 45.00 3.69
50 51 3.965026 CTGAGGCCCGACCAGGAGA 62.965 68.421 0.00 0.00 45.00 3.71
51 52 3.151022 GAGGCCCGACCAGGAGAG 61.151 72.222 0.00 0.00 45.00 3.20
52 53 3.663815 GAGGCCCGACCAGGAGAGA 62.664 68.421 0.00 0.00 45.00 3.10
53 54 3.462678 GGCCCGACCAGGAGAGAC 61.463 72.222 0.00 0.00 45.00 3.36
54 55 3.827898 GCCCGACCAGGAGAGACG 61.828 72.222 0.00 0.00 45.00 4.18
55 56 3.827898 CCCGACCAGGAGAGACGC 61.828 72.222 0.00 0.00 45.00 5.19
56 57 3.062466 CCGACCAGGAGAGACGCA 61.062 66.667 0.00 0.00 45.00 5.24
57 58 2.418910 CCGACCAGGAGAGACGCAT 61.419 63.158 0.00 0.00 45.00 4.73
58 59 1.513158 CGACCAGGAGAGACGCATT 59.487 57.895 0.00 0.00 0.00 3.56
59 60 0.526524 CGACCAGGAGAGACGCATTC 60.527 60.000 0.00 0.00 0.00 2.67
60 61 0.532573 GACCAGGAGAGACGCATTCA 59.467 55.000 0.00 0.00 0.00 2.57
61 62 1.137872 GACCAGGAGAGACGCATTCAT 59.862 52.381 0.00 0.00 0.00 2.57
62 63 1.137872 ACCAGGAGAGACGCATTCATC 59.862 52.381 0.00 0.00 0.00 2.92
63 64 1.485397 CAGGAGAGACGCATTCATCG 58.515 55.000 0.00 0.00 0.00 3.84
64 65 1.107114 AGGAGAGACGCATTCATCGT 58.893 50.000 0.00 0.00 43.49 3.73
72 73 3.503827 ACGCATTCATCGTCTAGTCAA 57.496 42.857 0.00 0.00 34.84 3.18
73 74 4.046938 ACGCATTCATCGTCTAGTCAAT 57.953 40.909 0.00 0.00 34.84 2.57
74 75 4.045104 ACGCATTCATCGTCTAGTCAATC 58.955 43.478 0.00 0.00 34.84 2.67
75 76 3.426859 CGCATTCATCGTCTAGTCAATCC 59.573 47.826 0.00 0.00 0.00 3.01
76 77 3.426859 GCATTCATCGTCTAGTCAATCCG 59.573 47.826 0.00 0.00 0.00 4.18
77 78 2.776312 TCATCGTCTAGTCAATCCGC 57.224 50.000 0.00 0.00 0.00 5.54
78 79 2.298610 TCATCGTCTAGTCAATCCGCT 58.701 47.619 0.00 0.00 0.00 5.52
79 80 2.688446 TCATCGTCTAGTCAATCCGCTT 59.312 45.455 0.00 0.00 0.00 4.68
80 81 2.846039 TCGTCTAGTCAATCCGCTTC 57.154 50.000 0.00 0.00 0.00 3.86
81 82 1.404391 TCGTCTAGTCAATCCGCTTCC 59.596 52.381 0.00 0.00 0.00 3.46
82 83 1.536284 CGTCTAGTCAATCCGCTTCCC 60.536 57.143 0.00 0.00 0.00 3.97
83 84 1.120530 TCTAGTCAATCCGCTTCCCC 58.879 55.000 0.00 0.00 0.00 4.81
84 85 0.106894 CTAGTCAATCCGCTTCCCCC 59.893 60.000 0.00 0.00 0.00 5.40
85 86 1.682451 TAGTCAATCCGCTTCCCCCG 61.682 60.000 0.00 0.00 0.00 5.73
86 87 2.685743 TCAATCCGCTTCCCCCGA 60.686 61.111 0.00 0.00 0.00 5.14
87 88 2.070039 TCAATCCGCTTCCCCCGAT 61.070 57.895 0.00 0.00 0.00 4.18
88 89 0.761323 TCAATCCGCTTCCCCCGATA 60.761 55.000 0.00 0.00 0.00 2.92
89 90 0.320771 CAATCCGCTTCCCCCGATAG 60.321 60.000 0.00 0.00 0.00 2.08
90 91 0.471211 AATCCGCTTCCCCCGATAGA 60.471 55.000 0.00 0.00 39.76 1.98
91 92 0.471211 ATCCGCTTCCCCCGATAGAA 60.471 55.000 0.00 0.00 39.76 2.10
92 93 1.113517 TCCGCTTCCCCCGATAGAAG 61.114 60.000 0.00 0.00 41.99 2.85
93 94 1.113517 CCGCTTCCCCCGATAGAAGA 61.114 60.000 11.08 0.00 41.69 2.87
94 95 0.750850 CGCTTCCCCCGATAGAAGAA 59.249 55.000 11.08 0.00 41.69 2.52
95 96 1.269831 CGCTTCCCCCGATAGAAGAAG 60.270 57.143 11.08 0.00 41.69 2.85
96 97 2.040178 GCTTCCCCCGATAGAAGAAGA 58.960 52.381 11.08 0.00 41.69 2.87
97 98 2.036604 GCTTCCCCCGATAGAAGAAGAG 59.963 54.545 11.08 0.00 41.69 2.85
98 99 3.301274 CTTCCCCCGATAGAAGAAGAGT 58.699 50.000 3.12 0.00 41.69 3.24
99 100 2.667470 TCCCCCGATAGAAGAAGAGTG 58.333 52.381 0.00 0.00 39.76 3.51
100 101 2.024273 TCCCCCGATAGAAGAAGAGTGT 60.024 50.000 0.00 0.00 39.76 3.55
101 102 2.101582 CCCCCGATAGAAGAAGAGTGTG 59.898 54.545 0.00 0.00 39.76 3.82
102 103 2.482142 CCCCGATAGAAGAAGAGTGTGC 60.482 54.545 0.00 0.00 39.76 4.57
103 104 2.482142 CCCGATAGAAGAAGAGTGTGCC 60.482 54.545 0.00 0.00 39.76 5.01
104 105 2.482142 CCGATAGAAGAAGAGTGTGCCC 60.482 54.545 0.00 0.00 39.76 5.36
105 106 2.482142 CGATAGAAGAAGAGTGTGCCCC 60.482 54.545 0.00 0.00 39.76 5.80
106 107 2.024176 TAGAAGAAGAGTGTGCCCCA 57.976 50.000 0.00 0.00 0.00 4.96
107 108 0.689623 AGAAGAAGAGTGTGCCCCAG 59.310 55.000 0.00 0.00 0.00 4.45
108 109 0.398318 GAAGAAGAGTGTGCCCCAGT 59.602 55.000 0.00 0.00 0.00 4.00
109 110 1.623811 GAAGAAGAGTGTGCCCCAGTA 59.376 52.381 0.00 0.00 0.00 2.74
110 111 0.977395 AGAAGAGTGTGCCCCAGTAC 59.023 55.000 0.00 0.00 0.00 2.73
111 112 0.036294 GAAGAGTGTGCCCCAGTACC 60.036 60.000 0.00 0.00 0.00 3.34
112 113 0.766674 AAGAGTGTGCCCCAGTACCA 60.767 55.000 0.00 0.00 0.00 3.25
113 114 1.194781 AGAGTGTGCCCCAGTACCAG 61.195 60.000 0.00 0.00 0.00 4.00
114 115 1.152118 AGTGTGCCCCAGTACCAGA 60.152 57.895 0.00 0.00 0.00 3.86
115 116 1.194781 AGTGTGCCCCAGTACCAGAG 61.195 60.000 0.00 0.00 0.00 3.35
116 117 1.157513 TGTGCCCCAGTACCAGAGA 59.842 57.895 0.00 0.00 0.00 3.10
117 118 1.192146 TGTGCCCCAGTACCAGAGAC 61.192 60.000 0.00 0.00 0.00 3.36
118 119 1.982395 TGCCCCAGTACCAGAGACG 60.982 63.158 0.00 0.00 0.00 4.18
119 120 1.982938 GCCCCAGTACCAGAGACGT 60.983 63.158 0.00 0.00 0.00 4.34
120 121 1.542187 GCCCCAGTACCAGAGACGTT 61.542 60.000 0.00 0.00 0.00 3.99
121 122 0.974383 CCCCAGTACCAGAGACGTTT 59.026 55.000 0.00 0.00 0.00 3.60
122 123 1.346722 CCCCAGTACCAGAGACGTTTT 59.653 52.381 0.00 0.00 0.00 2.43
123 124 2.612221 CCCCAGTACCAGAGACGTTTTC 60.612 54.545 0.00 0.00 0.00 2.29
124 125 2.299297 CCCAGTACCAGAGACGTTTTCT 59.701 50.000 0.00 0.00 37.23 2.52
133 134 1.718280 AGACGTTTTCTCAGGACCCT 58.282 50.000 0.00 0.00 0.00 4.34
134 135 1.344763 AGACGTTTTCTCAGGACCCTG 59.655 52.381 9.74 9.74 44.86 4.45
135 136 1.070289 GACGTTTTCTCAGGACCCTGT 59.930 52.381 15.06 0.00 43.96 4.00
136 137 1.070289 ACGTTTTCTCAGGACCCTGTC 59.930 52.381 15.06 0.00 43.96 3.51
147 148 2.484742 GACCCTGTCCATTTACCGTT 57.515 50.000 0.00 0.00 0.00 4.44
148 149 2.786777 GACCCTGTCCATTTACCGTTT 58.213 47.619 0.00 0.00 0.00 3.60
149 150 3.151554 GACCCTGTCCATTTACCGTTTT 58.848 45.455 0.00 0.00 0.00 2.43
150 151 3.151554 ACCCTGTCCATTTACCGTTTTC 58.848 45.455 0.00 0.00 0.00 2.29
151 152 3.150767 CCCTGTCCATTTACCGTTTTCA 58.849 45.455 0.00 0.00 0.00 2.69
152 153 3.057806 CCCTGTCCATTTACCGTTTTCAC 60.058 47.826 0.00 0.00 0.00 3.18
153 154 3.818773 CCTGTCCATTTACCGTTTTCACT 59.181 43.478 0.00 0.00 0.00 3.41
154 155 4.320202 CCTGTCCATTTACCGTTTTCACTG 60.320 45.833 0.00 0.00 0.00 3.66
155 156 4.200874 TGTCCATTTACCGTTTTCACTGT 58.799 39.130 0.00 0.00 0.00 3.55
156 157 5.366460 TGTCCATTTACCGTTTTCACTGTA 58.634 37.500 0.00 0.00 0.00 2.74
157 158 5.467399 TGTCCATTTACCGTTTTCACTGTAG 59.533 40.000 0.00 0.00 0.00 2.74
158 159 5.697633 GTCCATTTACCGTTTTCACTGTAGA 59.302 40.000 0.00 0.00 0.00 2.59
159 160 5.697633 TCCATTTACCGTTTTCACTGTAGAC 59.302 40.000 0.00 0.00 0.00 2.59
160 161 5.467399 CCATTTACCGTTTTCACTGTAGACA 59.533 40.000 0.00 0.00 0.00 3.41
161 162 6.148811 CCATTTACCGTTTTCACTGTAGACAT 59.851 38.462 0.00 0.00 0.00 3.06
162 163 6.774354 TTTACCGTTTTCACTGTAGACATC 57.226 37.500 0.00 0.00 0.00 3.06
163 164 4.330944 ACCGTTTTCACTGTAGACATCA 57.669 40.909 0.00 0.00 0.00 3.07
164 165 4.056050 ACCGTTTTCACTGTAGACATCAC 58.944 43.478 0.00 0.00 0.00 3.06
165 166 4.202223 ACCGTTTTCACTGTAGACATCACT 60.202 41.667 0.00 0.00 0.00 3.41
166 167 4.150627 CCGTTTTCACTGTAGACATCACTG 59.849 45.833 0.00 0.00 0.00 3.66
167 168 4.376413 CGTTTTCACTGTAGACATCACTGC 60.376 45.833 0.00 0.00 0.00 4.40
168 169 4.607293 TTTCACTGTAGACATCACTGCT 57.393 40.909 0.00 0.00 0.00 4.24
169 170 5.722021 TTTCACTGTAGACATCACTGCTA 57.278 39.130 0.00 0.00 0.00 3.49
170 171 5.921962 TTCACTGTAGACATCACTGCTAT 57.078 39.130 0.00 0.00 0.00 2.97
171 172 5.254339 TCACTGTAGACATCACTGCTATG 57.746 43.478 0.00 0.00 0.00 2.23
172 173 4.706962 TCACTGTAGACATCACTGCTATGT 59.293 41.667 0.00 0.00 40.23 2.29
173 174 5.185828 TCACTGTAGACATCACTGCTATGTT 59.814 40.000 0.00 0.00 37.69 2.71
174 175 5.871524 CACTGTAGACATCACTGCTATGTTT 59.128 40.000 0.00 0.00 37.69 2.83
175 176 7.035612 CACTGTAGACATCACTGCTATGTTTA 58.964 38.462 0.00 0.00 37.69 2.01
176 177 7.708322 CACTGTAGACATCACTGCTATGTTTAT 59.292 37.037 0.00 0.00 37.69 1.40
177 178 8.260818 ACTGTAGACATCACTGCTATGTTTATT 58.739 33.333 0.00 0.00 37.69 1.40
178 179 8.424274 TGTAGACATCACTGCTATGTTTATTG 57.576 34.615 0.00 0.00 37.69 1.90
179 180 8.040727 TGTAGACATCACTGCTATGTTTATTGT 58.959 33.333 0.00 0.00 37.69 2.71
180 181 7.545362 AGACATCACTGCTATGTTTATTGTC 57.455 36.000 0.00 0.00 37.69 3.18
181 182 6.540189 AGACATCACTGCTATGTTTATTGTCC 59.460 38.462 0.00 0.00 37.69 4.02
182 183 5.590259 ACATCACTGCTATGTTTATTGTCCC 59.410 40.000 0.00 0.00 33.83 4.46
183 184 5.172687 TCACTGCTATGTTTATTGTCCCA 57.827 39.130 0.00 0.00 0.00 4.37
184 185 5.185454 TCACTGCTATGTTTATTGTCCCAG 58.815 41.667 0.00 0.00 0.00 4.45
185 186 4.943705 CACTGCTATGTTTATTGTCCCAGT 59.056 41.667 0.00 0.00 0.00 4.00
186 187 4.943705 ACTGCTATGTTTATTGTCCCAGTG 59.056 41.667 0.00 0.00 30.65 3.66
187 188 4.917385 TGCTATGTTTATTGTCCCAGTGT 58.083 39.130 0.00 0.00 0.00 3.55
188 189 5.321102 TGCTATGTTTATTGTCCCAGTGTT 58.679 37.500 0.00 0.00 0.00 3.32
189 190 5.772672 TGCTATGTTTATTGTCCCAGTGTTT 59.227 36.000 0.00 0.00 0.00 2.83
190 191 6.943146 TGCTATGTTTATTGTCCCAGTGTTTA 59.057 34.615 0.00 0.00 0.00 2.01
191 192 7.613801 TGCTATGTTTATTGTCCCAGTGTTTAT 59.386 33.333 0.00 0.00 0.00 1.40
192 193 8.466798 GCTATGTTTATTGTCCCAGTGTTTATT 58.533 33.333 0.00 0.00 0.00 1.40
193 194 9.787532 CTATGTTTATTGTCCCAGTGTTTATTG 57.212 33.333 0.00 0.00 0.00 1.90
194 195 7.825331 TGTTTATTGTCCCAGTGTTTATTGA 57.175 32.000 0.00 0.00 0.00 2.57
195 196 8.415950 TGTTTATTGTCCCAGTGTTTATTGAT 57.584 30.769 0.00 0.00 0.00 2.57
196 197 8.303156 TGTTTATTGTCCCAGTGTTTATTGATG 58.697 33.333 0.00 0.00 0.00 3.07
197 198 8.303876 GTTTATTGTCCCAGTGTTTATTGATGT 58.696 33.333 0.00 0.00 0.00 3.06
198 199 5.703978 TTGTCCCAGTGTTTATTGATGTG 57.296 39.130 0.00 0.00 0.00 3.21
199 200 4.724399 TGTCCCAGTGTTTATTGATGTGT 58.276 39.130 0.00 0.00 0.00 3.72
200 201 5.136828 TGTCCCAGTGTTTATTGATGTGTT 58.863 37.500 0.00 0.00 0.00 3.32
201 202 5.009510 TGTCCCAGTGTTTATTGATGTGTTG 59.990 40.000 0.00 0.00 0.00 3.33
202 203 4.022416 TCCCAGTGTTTATTGATGTGTTGC 60.022 41.667 0.00 0.00 0.00 4.17
203 204 4.261952 CCCAGTGTTTATTGATGTGTTGCA 60.262 41.667 0.00 0.00 0.00 4.08
204 205 5.288015 CCAGTGTTTATTGATGTGTTGCAA 58.712 37.500 0.00 0.00 0.00 4.08
205 206 5.175491 CCAGTGTTTATTGATGTGTTGCAAC 59.825 40.000 22.83 22.83 0.00 4.17
206 207 5.747675 CAGTGTTTATTGATGTGTTGCAACA 59.252 36.000 27.96 27.96 36.38 3.33
207 208 6.421501 CAGTGTTTATTGATGTGTTGCAACAT 59.578 34.615 33.16 19.93 43.47 2.71
208 209 7.594386 CAGTGTTTATTGATGTGTTGCAACATA 59.406 33.333 33.16 30.47 40.87 2.29
209 210 8.306038 AGTGTTTATTGATGTGTTGCAACATAT 58.694 29.630 33.62 33.62 42.39 1.78
210 211 8.374728 GTGTTTATTGATGTGTTGCAACATATG 58.625 33.333 36.79 0.00 40.24 1.78
228 229 9.414295 CAACATATGCATGGTATCCTAAATTTG 57.586 33.333 10.16 0.00 36.39 2.32
229 230 8.710749 ACATATGCATGGTATCCTAAATTTGT 57.289 30.769 10.16 0.00 36.39 2.83
230 231 8.579006 ACATATGCATGGTATCCTAAATTTGTG 58.421 33.333 10.16 0.00 36.39 3.33
231 232 5.261209 TGCATGGTATCCTAAATTTGTGC 57.739 39.130 0.00 0.00 0.00 4.57
232 233 4.202000 TGCATGGTATCCTAAATTTGTGCG 60.202 41.667 0.00 0.00 0.00 5.34
233 234 4.036262 GCATGGTATCCTAAATTTGTGCGA 59.964 41.667 0.00 0.00 0.00 5.10
234 235 5.278463 GCATGGTATCCTAAATTTGTGCGAT 60.278 40.000 0.00 0.00 0.00 4.58
235 236 5.749596 TGGTATCCTAAATTTGTGCGATG 57.250 39.130 0.00 0.00 0.00 3.84
236 237 4.578516 TGGTATCCTAAATTTGTGCGATGG 59.421 41.667 0.00 0.00 0.00 3.51
237 238 4.819630 GGTATCCTAAATTTGTGCGATGGA 59.180 41.667 0.00 0.00 0.00 3.41
238 239 5.473504 GGTATCCTAAATTTGTGCGATGGAT 59.526 40.000 0.00 0.00 36.99 3.41
239 240 6.016276 GGTATCCTAAATTTGTGCGATGGATT 60.016 38.462 0.00 0.00 35.13 3.01
240 241 7.174253 GGTATCCTAAATTTGTGCGATGGATTA 59.826 37.037 0.00 0.00 35.13 1.75
241 242 7.581213 ATCCTAAATTTGTGCGATGGATTAA 57.419 32.000 0.00 0.00 29.82 1.40
242 243 7.397892 TCCTAAATTTGTGCGATGGATTAAA 57.602 32.000 0.00 0.00 0.00 1.52
243 244 8.006298 TCCTAAATTTGTGCGATGGATTAAAT 57.994 30.769 0.00 0.00 0.00 1.40
244 245 9.126151 TCCTAAATTTGTGCGATGGATTAAATA 57.874 29.630 0.00 0.00 0.00 1.40
275 276 7.495934 CCTTGAAGACTTACCACGAATGATTAT 59.504 37.037 0.00 0.00 0.00 1.28
278 279 5.670485 AGACTTACCACGAATGATTATGCA 58.330 37.500 0.00 0.00 0.00 3.96
310 312 3.782523 TGACCTTGGCTCAAGAGGAATAT 59.217 43.478 14.33 0.00 43.42 1.28
325 327 6.206042 AGAGGAATATGGTGAGGACTAAGTT 58.794 40.000 0.00 0.00 0.00 2.66
356 358 2.281761 CGCTCAACTGCCCCAACT 60.282 61.111 0.00 0.00 0.00 3.16
361 363 1.347707 CTCAACTGCCCCAACTAGACA 59.652 52.381 0.00 0.00 0.00 3.41
591 597 6.961359 ATGATTGCATGTTCTTCATTTGTG 57.039 33.333 0.00 0.00 34.09 3.33
654 660 1.365699 TCGCTTCCGTTGCTATTTCC 58.634 50.000 0.00 0.00 35.54 3.13
657 663 1.327764 GCTTCCGTTGCTATTTCCTCG 59.672 52.381 0.00 0.00 0.00 4.63
664 670 3.863424 CGTTGCTATTTCCTCGCTCTAAA 59.137 43.478 0.00 0.00 0.00 1.85
670 676 4.537936 ATTTCCTCGCTCTAAATTTCGC 57.462 40.909 0.00 0.00 0.00 4.70
748 760 0.038526 CACCGGCGTGAGAGTAAACT 60.039 55.000 6.01 0.00 43.14 2.66
765 949 1.739067 ACTTGCGCTTTCACTATCCC 58.261 50.000 9.73 0.00 0.00 3.85
815 999 8.237811 ACCATATAATTCAGACCCACAAAATC 57.762 34.615 0.00 0.00 0.00 2.17
1047 1235 5.484290 CCCGGTACTTATCTTCATTATCCCT 59.516 44.000 0.00 0.00 0.00 4.20
1048 1236 6.666546 CCCGGTACTTATCTTCATTATCCCTA 59.333 42.308 0.00 0.00 0.00 3.53
1245 1433 7.490657 TCCTAACCACTTGTGTGATTACTAT 57.509 36.000 0.00 0.00 46.55 2.12
1246 1434 8.598202 TCCTAACCACTTGTGTGATTACTATA 57.402 34.615 0.00 0.00 46.55 1.31
1247 1435 8.692710 TCCTAACCACTTGTGTGATTACTATAG 58.307 37.037 0.00 0.00 46.55 1.31
1248 1436 8.475639 CCTAACCACTTGTGTGATTACTATAGT 58.524 37.037 10.87 10.87 46.55 2.12
1383 1571 4.118410 TGCAAAGAAATCGTGCAAATTGT 58.882 34.783 10.97 0.00 44.88 2.71
1597 1785 7.544650 TCCTCCATGTAATCTTTCCCTAGATA 58.455 38.462 0.00 0.00 33.81 1.98
1609 1797 4.852991 TCCCTAGATAAATCCCTCCAGT 57.147 45.455 0.00 0.00 0.00 4.00
1647 1835 8.671987 ATACCACTAGCAGATTAGGTTCATAT 57.328 34.615 0.00 0.00 0.00 1.78
1765 1953 0.450983 ACGTAGCAACTACTCCGAGC 59.549 55.000 0.00 0.00 35.06 5.03
2148 2344 6.097554 TCACTTTGCCATTTCTCAGGTTTTAA 59.902 34.615 0.00 0.00 0.00 1.52
2167 2363 1.176527 ATTCTGCACCAAATGGACGG 58.823 50.000 6.42 3.30 38.94 4.79
2313 2510 6.043590 TCTGTCATGTATGGCCTTATCTCATT 59.956 38.462 3.32 0.00 0.00 2.57
2341 2538 8.712285 TTATTTTACTTCCGTCTGTAGATTGG 57.288 34.615 0.00 0.00 0.00 3.16
2420 2617 2.557869 AGTATGTTCCTGCCCCTGTTA 58.442 47.619 0.00 0.00 0.00 2.41
2434 2631 5.181748 GCCCCTGTTATCTGCTTGATATAG 58.818 45.833 1.89 4.17 37.48 1.31
2435 2632 5.280215 GCCCCTGTTATCTGCTTGATATAGT 60.280 44.000 1.89 0.00 37.48 2.12
2436 2633 6.070767 GCCCCTGTTATCTGCTTGATATAGTA 60.071 42.308 1.89 0.00 37.48 1.82
2437 2634 7.527196 GCCCCTGTTATCTGCTTGATATAGTAA 60.527 40.741 1.89 0.00 37.48 2.24
2438 2635 7.819900 CCCCTGTTATCTGCTTGATATAGTAAC 59.180 40.741 1.89 0.00 37.48 2.50
2439 2636 8.367911 CCCTGTTATCTGCTTGATATAGTAACA 58.632 37.037 0.00 0.00 37.48 2.41
2440 2637 9.197694 CCTGTTATCTGCTTGATATAGTAACAC 57.802 37.037 0.00 0.00 37.48 3.32
2441 2638 9.750125 CTGTTATCTGCTTGATATAGTAACACA 57.250 33.333 0.00 1.82 37.48 3.72
2446 2643 8.822652 TCTGCTTGATATAGTAACACATGATG 57.177 34.615 0.00 0.00 0.00 3.07
2470 2679 6.071896 TGGTTTACATGTTTCTGTTGTGAACA 60.072 34.615 2.30 0.00 39.95 3.18
2484 2693 0.250858 TGAACACCCAGCCAGTGATG 60.251 55.000 5.46 0.00 38.63 3.07
2885 3200 3.742433 TTTTCCCACAAAATGCGTGAT 57.258 38.095 0.00 0.00 36.43 3.06
2911 3226 1.424638 GGGCTAGCTACAGATGGGAA 58.575 55.000 15.72 0.00 0.00 3.97
2960 3275 5.902681 TCAACTTTGTACCAGATAGATCCG 58.097 41.667 0.00 0.00 0.00 4.18
2963 3278 4.585162 ACTTTGTACCAGATAGATCCGGAG 59.415 45.833 11.34 0.00 0.00 4.63
3174 3489 4.494591 AGTTGTCTACTTCCTCCTTCCTT 58.505 43.478 0.00 0.00 31.29 3.36
3321 3636 4.214986 TCCGTAAATGCTTGATCCAGAA 57.785 40.909 0.00 0.00 0.00 3.02
3437 3752 1.670811 GGATTGGTGATTGGTACTGCG 59.329 52.381 0.00 0.00 0.00 5.18
3468 3783 6.172630 GCCATTGGTAGAAATGAAAATTGGT 58.827 36.000 4.26 0.00 39.46 3.67
3510 3825 4.654091 AACATTGGCTCGGATTTAATGG 57.346 40.909 0.00 0.00 34.07 3.16
3617 3933 7.507616 ACTTCAACTGGTTATTGGTTCCATTTA 59.492 33.333 0.00 0.00 0.00 1.40
3639 3955 1.409064 CATAAGTCGTCAGCAGCCCTA 59.591 52.381 0.00 0.00 0.00 3.53
3682 3998 4.397103 TGCTGCAATTCTGAGTATTCCAAG 59.603 41.667 0.00 0.00 0.00 3.61
3687 4003 6.261603 TGCAATTCTGAGTATTCCAAGCTATG 59.738 38.462 0.00 0.00 0.00 2.23
3769 4085 4.279420 GGTTTTTCTTCATGAGCTGAGGTT 59.721 41.667 0.00 0.00 34.68 3.50
3900 4216 0.616891 TCATGCAGGCATCACTCACT 59.383 50.000 3.30 0.00 33.90 3.41
3930 4246 7.279615 TCAGGTAATATGGTGAGTGGTTTATG 58.720 38.462 0.00 0.00 0.00 1.90
3981 4297 5.013495 TGTTTCCTCATTCTGTGATCTCCTT 59.987 40.000 0.00 0.00 35.97 3.36
4240 4556 3.343617 GAACCATGATGAACCCTTTCGA 58.656 45.455 0.00 0.00 34.04 3.71
4272 4588 2.494073 GACCGGAAAATTATGGCCAACA 59.506 45.455 10.96 0.00 0.00 3.33
4275 4591 3.510719 CGGAAAATTATGGCCAACACTG 58.489 45.455 10.96 0.00 0.00 3.66
4414 4730 1.685765 AGGTGATCGCTGGCCAGTA 60.686 57.895 32.81 21.93 0.00 2.74
4436 4752 2.027929 ACCGGATTACATGGTTTCGACA 60.028 45.455 9.46 0.00 29.87 4.35
4438 4754 4.141892 ACCGGATTACATGGTTTCGACATA 60.142 41.667 9.46 0.00 29.87 2.29
4510 4826 1.148446 AGGCATGCATTCATACCCCAT 59.852 47.619 21.36 0.00 36.90 4.00
4541 4857 2.726821 TGGGTCTTGCAAGGATGATTC 58.273 47.619 25.73 9.57 0.00 2.52
4553 4869 5.351465 GCAAGGATGATTCTGTTTCGAACTA 59.649 40.000 0.00 0.00 0.00 2.24
4573 4889 6.892658 ACTATTGTAATTGTCAAGGCACAA 57.107 33.333 10.22 10.22 40.54 3.33
4598 4914 4.218417 ACATTTTCTTGCCATGTGGAGTAC 59.782 41.667 2.55 0.00 37.39 2.73
4648 4964 8.492673 TCTCGTTTGAAATTAATAGACAGCAT 57.507 30.769 0.00 0.00 0.00 3.79
4692 5008 5.163581 GGAATGCATCATGTATAAGGGCATC 60.164 44.000 0.00 0.00 39.36 3.91
4726 5042 3.057315 CCATCAAACATGTTCTCACACCC 60.057 47.826 12.39 0.00 35.03 4.61
4741 5057 0.251634 CACCCTCTCCTTCCTTCTGC 59.748 60.000 0.00 0.00 0.00 4.26
4784 5100 3.448934 AGAACATGTCAGAGATGGAGGT 58.551 45.455 12.06 0.00 0.00 3.85
4788 5104 1.142748 GTCAGAGATGGAGGTGGCG 59.857 63.158 0.00 0.00 0.00 5.69
4830 5146 3.929610 GCATCATACTAGCCCGAAAGATC 59.070 47.826 0.00 0.00 0.00 2.75
4835 5151 5.540337 TCATACTAGCCCGAAAGATCATCTT 59.460 40.000 0.00 0.00 38.59 2.40
4841 5157 3.134458 CCCGAAAGATCATCTTGGCTAC 58.866 50.000 0.00 0.00 36.71 3.58
4846 5162 1.560860 GATCATCTTGGCTACGCGGC 61.561 60.000 12.47 4.60 38.97 6.53
4940 5256 1.516161 ATGATCGTGCAATCCATCCG 58.484 50.000 0.00 0.00 0.00 4.18
4950 5266 1.330521 CAATCCATCCGCTACCAAACG 59.669 52.381 0.00 0.00 0.00 3.60
4985 5301 6.701841 CAGAAAGATTAGTTAATAGCGGCAGA 59.298 38.462 1.45 0.00 0.00 4.26
4999 5315 0.037326 GGCAGACAATGAGGACACGA 60.037 55.000 0.00 0.00 0.00 4.35
5001 5317 1.340658 CAGACAATGAGGACACGACG 58.659 55.000 0.00 0.00 0.00 5.12
5002 5318 1.068541 CAGACAATGAGGACACGACGA 60.069 52.381 0.00 0.00 0.00 4.20
5015 5331 0.807496 ACGACGAAGGCTACCTACAC 59.193 55.000 0.00 0.00 31.13 2.90
5021 5337 3.455469 GGCTACCTACACGGCGGT 61.455 66.667 13.24 9.14 37.31 5.68
5022 5338 2.120909 GGCTACCTACACGGCGGTA 61.121 63.158 13.24 9.86 34.76 4.02
5039 5355 3.587797 GGTAACGACACCTTGATCTGA 57.412 47.619 0.00 0.00 35.55 3.27
5042 5358 3.753294 AACGACACCTTGATCTGAAGT 57.247 42.857 0.00 0.00 0.00 3.01
5059 5375 3.197766 TGAAGTAGATCGCTGGGATTGTT 59.802 43.478 8.71 1.00 34.82 2.83
5063 5379 1.837439 AGATCGCTGGGATTGTTGGTA 59.163 47.619 8.71 0.00 34.82 3.25
5067 5383 1.742411 CGCTGGGATTGTTGGTACGAT 60.742 52.381 0.00 0.00 0.00 3.73
5131 5469 1.068333 CCACTTTTTGGCTGTGATCGG 60.068 52.381 0.00 0.00 39.07 4.18
5138 5476 3.945434 GCTGTGATCGGGCATGCG 61.945 66.667 12.44 0.00 0.00 4.73
5155 5493 4.451150 GATCCGGCGCTGGTGTGA 62.451 66.667 33.59 16.22 0.00 3.58
5156 5494 3.740128 GATCCGGCGCTGGTGTGAT 62.740 63.158 33.59 20.46 0.00 3.06
5157 5495 3.740128 ATCCGGCGCTGGTGTGATC 62.740 63.158 33.59 0.00 0.00 2.92
5177 5515 3.422303 GCGCGCTGTGTGGATCAA 61.422 61.111 26.67 0.00 0.00 2.57
5192 5530 9.258826 TGTGTGGATCAAACTTTATTTGAATTG 57.741 29.630 6.20 0.00 41.16 2.32
5205 5543 4.354893 TTTGAATTGCAAATTGCCCTCT 57.645 36.364 15.98 0.00 44.23 3.69
5206 5544 5.480642 TTTGAATTGCAAATTGCCCTCTA 57.519 34.783 15.98 3.64 44.23 2.43
5207 5545 4.454728 TGAATTGCAAATTGCCCTCTAC 57.545 40.909 15.98 3.19 44.23 2.59
5208 5546 4.088634 TGAATTGCAAATTGCCCTCTACT 58.911 39.130 15.98 0.00 44.23 2.57
5209 5547 5.260424 TGAATTGCAAATTGCCCTCTACTA 58.740 37.500 15.98 0.00 44.23 1.82
5237 5575 6.261826 GGACATATAGGATAGCATTTGATGGC 59.738 42.308 0.00 0.00 0.00 4.40
5240 5578 1.421268 AGGATAGCATTTGATGGCCGA 59.579 47.619 0.00 0.00 0.00 5.54
5241 5579 1.537202 GGATAGCATTTGATGGCCGAC 59.463 52.381 0.00 0.00 0.00 4.79
5243 5581 1.953559 TAGCATTTGATGGCCGACTC 58.046 50.000 0.00 0.00 0.00 3.36
5245 5583 0.749454 GCATTTGATGGCCGACTCCT 60.749 55.000 0.00 0.00 0.00 3.69
5282 5620 0.173481 GAAGCGGGAGGAAATTTGCC 59.827 55.000 6.02 2.57 0.00 4.52
5304 5642 2.121291 TTGGCGTTGGAGATGCATTA 57.879 45.000 0.00 0.00 42.27 1.90
5369 5707 4.539596 AAGTTGGTTTTACCCCCTTACA 57.460 40.909 0.00 0.00 37.50 2.41
5388 5726 2.203209 CGCACCTAGCCAATCCCC 60.203 66.667 0.00 0.00 41.38 4.81
5389 5727 2.746375 CGCACCTAGCCAATCCCCT 61.746 63.158 0.00 0.00 41.38 4.79
5390 5728 1.615262 GCACCTAGCCAATCCCCTT 59.385 57.895 0.00 0.00 37.23 3.95
5391 5729 0.753111 GCACCTAGCCAATCCCCTTG 60.753 60.000 0.00 0.00 37.23 3.61
5392 5730 0.918983 CACCTAGCCAATCCCCTTGA 59.081 55.000 0.00 0.00 36.97 3.02
5393 5731 1.284785 CACCTAGCCAATCCCCTTGAA 59.715 52.381 0.00 0.00 36.97 2.69
5394 5732 1.566231 ACCTAGCCAATCCCCTTGAAG 59.434 52.381 0.00 0.00 36.97 3.02
5395 5733 1.566231 CCTAGCCAATCCCCTTGAAGT 59.434 52.381 0.00 0.00 36.97 3.01
5396 5734 2.422093 CCTAGCCAATCCCCTTGAAGTC 60.422 54.545 0.00 0.00 36.97 3.01
5397 5735 1.075601 AGCCAATCCCCTTGAAGTCA 58.924 50.000 0.00 0.00 36.97 3.41
5398 5736 1.642762 AGCCAATCCCCTTGAAGTCAT 59.357 47.619 0.00 0.00 36.97 3.06
5399 5737 2.852449 AGCCAATCCCCTTGAAGTCATA 59.148 45.455 0.00 0.00 36.97 2.15
5400 5738 3.117738 AGCCAATCCCCTTGAAGTCATAG 60.118 47.826 0.00 0.00 36.97 2.23
5401 5739 3.372025 GCCAATCCCCTTGAAGTCATAGT 60.372 47.826 0.00 0.00 36.97 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.692625 CGATGGCGATCTGAGGATTTAAAT 59.307 41.667 7.15 0.00 40.82 1.40
1 2 4.058124 CGATGGCGATCTGAGGATTTAAA 58.942 43.478 7.15 0.00 40.82 1.52
2 3 3.554960 CCGATGGCGATCTGAGGATTTAA 60.555 47.826 7.15 0.00 40.82 1.52
3 4 2.029020 CCGATGGCGATCTGAGGATTTA 60.029 50.000 7.15 0.00 40.82 1.40
4 5 1.270518 CCGATGGCGATCTGAGGATTT 60.271 52.381 7.15 0.00 40.82 2.17
5 6 0.319728 CCGATGGCGATCTGAGGATT 59.680 55.000 7.15 0.00 40.82 3.01
6 7 1.970639 CCGATGGCGATCTGAGGAT 59.029 57.895 7.15 0.00 40.82 3.24
7 8 2.861101 GCCGATGGCGATCTGAGGA 61.861 63.158 7.15 0.00 39.62 3.71
8 9 2.356793 GCCGATGGCGATCTGAGG 60.357 66.667 7.15 2.24 39.62 3.86
18 19 0.742281 CCTCAGTGTTCTGCCGATGG 60.742 60.000 0.00 0.00 41.10 3.51
19 20 1.364626 GCCTCAGTGTTCTGCCGATG 61.365 60.000 0.00 0.00 41.10 3.84
20 21 1.078848 GCCTCAGTGTTCTGCCGAT 60.079 57.895 0.00 0.00 41.10 4.18
21 22 2.343758 GCCTCAGTGTTCTGCCGA 59.656 61.111 0.00 0.00 41.10 5.54
22 23 2.743928 GGCCTCAGTGTTCTGCCG 60.744 66.667 0.00 0.00 41.10 5.69
23 24 2.360475 GGGCCTCAGTGTTCTGCC 60.360 66.667 0.84 0.00 41.10 4.85
24 25 2.743928 CGGGCCTCAGTGTTCTGC 60.744 66.667 0.84 0.00 41.10 4.26
25 26 1.374758 GTCGGGCCTCAGTGTTCTG 60.375 63.158 0.84 0.00 42.54 3.02
26 27 2.584391 GGTCGGGCCTCAGTGTTCT 61.584 63.158 0.84 0.00 0.00 3.01
27 28 2.047179 GGTCGGGCCTCAGTGTTC 60.047 66.667 0.84 0.00 0.00 3.18
28 29 2.847234 TGGTCGGGCCTCAGTGTT 60.847 61.111 0.84 0.00 38.35 3.32
29 30 3.314331 CTGGTCGGGCCTCAGTGT 61.314 66.667 0.84 0.00 38.35 3.55
30 31 4.087892 CCTGGTCGGGCCTCAGTG 62.088 72.222 0.84 0.00 38.35 3.66
31 32 4.316823 TCCTGGTCGGGCCTCAGT 62.317 66.667 0.84 0.00 38.35 3.41
32 33 3.465403 CTCCTGGTCGGGCCTCAG 61.465 72.222 0.84 6.69 38.35 3.35
33 34 3.965026 CTCTCCTGGTCGGGCCTCA 62.965 68.421 0.84 0.00 38.35 3.86
34 35 3.151022 CTCTCCTGGTCGGGCCTC 61.151 72.222 0.84 0.00 38.35 4.70
35 36 3.673597 TCTCTCCTGGTCGGGCCT 61.674 66.667 0.84 0.00 38.35 5.19
36 37 3.462678 GTCTCTCCTGGTCGGGCC 61.463 72.222 0.00 0.00 37.90 5.80
37 38 3.827898 CGTCTCTCCTGGTCGGGC 61.828 72.222 0.00 0.00 0.00 6.13
38 39 3.827898 GCGTCTCTCCTGGTCGGG 61.828 72.222 0.00 0.00 0.00 5.14
39 40 1.949847 AATGCGTCTCTCCTGGTCGG 61.950 60.000 0.00 0.00 0.00 4.79
40 41 0.526524 GAATGCGTCTCTCCTGGTCG 60.527 60.000 0.00 0.00 0.00 4.79
41 42 0.532573 TGAATGCGTCTCTCCTGGTC 59.467 55.000 0.00 0.00 0.00 4.02
42 43 1.137872 GATGAATGCGTCTCTCCTGGT 59.862 52.381 0.00 0.00 0.00 4.00
43 44 1.863267 GATGAATGCGTCTCTCCTGG 58.137 55.000 0.00 0.00 0.00 4.45
44 45 1.202348 ACGATGAATGCGTCTCTCCTG 60.202 52.381 0.00 0.00 37.42 3.86
45 46 1.107114 ACGATGAATGCGTCTCTCCT 58.893 50.000 0.00 0.00 37.42 3.69
46 47 3.650409 ACGATGAATGCGTCTCTCC 57.350 52.632 0.00 0.00 37.42 3.71
52 53 3.503827 TTGACTAGACGATGAATGCGT 57.496 42.857 0.00 0.00 45.79 5.24
53 54 3.426859 GGATTGACTAGACGATGAATGCG 59.573 47.826 0.00 0.00 0.00 4.73
54 55 3.426859 CGGATTGACTAGACGATGAATGC 59.573 47.826 0.00 0.00 0.00 3.56
55 56 3.426859 GCGGATTGACTAGACGATGAATG 59.573 47.826 0.00 0.00 0.00 2.67
56 57 3.319405 AGCGGATTGACTAGACGATGAAT 59.681 43.478 0.00 0.00 0.00 2.57
57 58 2.688446 AGCGGATTGACTAGACGATGAA 59.312 45.455 0.00 0.00 0.00 2.57
58 59 2.298610 AGCGGATTGACTAGACGATGA 58.701 47.619 0.00 0.00 0.00 2.92
59 60 2.783828 AGCGGATTGACTAGACGATG 57.216 50.000 0.00 0.00 0.00 3.84
60 61 2.034812 GGAAGCGGATTGACTAGACGAT 59.965 50.000 0.00 0.00 0.00 3.73
61 62 1.404391 GGAAGCGGATTGACTAGACGA 59.596 52.381 0.00 0.00 0.00 4.20
62 63 1.536284 GGGAAGCGGATTGACTAGACG 60.536 57.143 0.00 0.00 0.00 4.18
63 64 1.202545 GGGGAAGCGGATTGACTAGAC 60.203 57.143 0.00 0.00 0.00 2.59
64 65 1.120530 GGGGAAGCGGATTGACTAGA 58.879 55.000 0.00 0.00 0.00 2.43
65 66 0.106894 GGGGGAAGCGGATTGACTAG 59.893 60.000 0.00 0.00 0.00 2.57
66 67 1.682451 CGGGGGAAGCGGATTGACTA 61.682 60.000 0.00 0.00 0.00 2.59
67 68 2.998949 GGGGGAAGCGGATTGACT 59.001 61.111 0.00 0.00 0.00 3.41
68 69 2.325393 ATCGGGGGAAGCGGATTGAC 62.325 60.000 0.00 0.00 0.00 3.18
69 70 0.761323 TATCGGGGGAAGCGGATTGA 60.761 55.000 0.00 0.00 0.00 2.57
70 71 0.320771 CTATCGGGGGAAGCGGATTG 60.321 60.000 0.00 0.00 0.00 2.67
71 72 0.471211 TCTATCGGGGGAAGCGGATT 60.471 55.000 0.00 0.00 0.00 3.01
72 73 0.471211 TTCTATCGGGGGAAGCGGAT 60.471 55.000 0.00 0.00 0.00 4.18
73 74 1.075822 TTCTATCGGGGGAAGCGGA 60.076 57.895 0.00 0.00 0.00 5.54
74 75 1.113517 TCTTCTATCGGGGGAAGCGG 61.114 60.000 0.00 0.00 38.86 5.52
75 76 0.750850 TTCTTCTATCGGGGGAAGCG 59.249 55.000 0.00 0.00 38.86 4.68
76 77 2.036604 CTCTTCTTCTATCGGGGGAAGC 59.963 54.545 0.00 0.00 38.86 3.86
77 78 3.068873 CACTCTTCTTCTATCGGGGGAAG 59.931 52.174 0.00 0.00 39.94 3.46
78 79 3.031736 CACTCTTCTTCTATCGGGGGAA 58.968 50.000 0.00 0.00 0.00 3.97
79 80 2.024273 ACACTCTTCTTCTATCGGGGGA 60.024 50.000 0.00 0.00 0.00 4.81
80 81 2.101582 CACACTCTTCTTCTATCGGGGG 59.898 54.545 0.00 0.00 0.00 5.40
81 82 2.482142 GCACACTCTTCTTCTATCGGGG 60.482 54.545 0.00 0.00 0.00 5.73
82 83 2.482142 GGCACACTCTTCTTCTATCGGG 60.482 54.545 0.00 0.00 0.00 5.14
83 84 2.482142 GGGCACACTCTTCTTCTATCGG 60.482 54.545 0.00 0.00 0.00 4.18
84 85 2.482142 GGGGCACACTCTTCTTCTATCG 60.482 54.545 0.00 0.00 0.00 2.92
85 86 2.501723 TGGGGCACACTCTTCTTCTATC 59.498 50.000 0.00 0.00 0.00 2.08
86 87 2.503356 CTGGGGCACACTCTTCTTCTAT 59.497 50.000 0.00 0.00 0.00 1.98
87 88 1.902508 CTGGGGCACACTCTTCTTCTA 59.097 52.381 0.00 0.00 0.00 2.10
88 89 0.689623 CTGGGGCACACTCTTCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
89 90 0.398318 ACTGGGGCACACTCTTCTTC 59.602 55.000 0.00 0.00 0.00 2.87
90 91 1.348036 GTACTGGGGCACACTCTTCTT 59.652 52.381 0.00 0.00 0.00 2.52
91 92 0.977395 GTACTGGGGCACACTCTTCT 59.023 55.000 0.00 0.00 0.00 2.85
92 93 0.036294 GGTACTGGGGCACACTCTTC 60.036 60.000 0.00 0.00 0.00 2.87
93 94 0.766674 TGGTACTGGGGCACACTCTT 60.767 55.000 0.00 0.00 0.00 2.85
94 95 1.152118 TGGTACTGGGGCACACTCT 60.152 57.895 0.00 0.00 0.00 3.24
95 96 1.192146 TCTGGTACTGGGGCACACTC 61.192 60.000 0.00 0.00 0.00 3.51
96 97 1.152118 TCTGGTACTGGGGCACACT 60.152 57.895 0.00 0.00 0.00 3.55
97 98 1.192146 TCTCTGGTACTGGGGCACAC 61.192 60.000 0.00 0.00 0.00 3.82
98 99 1.157513 TCTCTGGTACTGGGGCACA 59.842 57.895 0.00 0.00 0.00 4.57
99 100 1.597461 GTCTCTGGTACTGGGGCAC 59.403 63.158 0.00 0.00 30.74 5.01
100 101 1.982395 CGTCTCTGGTACTGGGGCA 60.982 63.158 0.00 0.00 29.18 5.36
101 102 1.542187 AACGTCTCTGGTACTGGGGC 61.542 60.000 0.00 0.00 0.00 5.80
102 103 0.974383 AAACGTCTCTGGTACTGGGG 59.026 55.000 0.00 0.00 0.00 4.96
103 104 2.299297 AGAAAACGTCTCTGGTACTGGG 59.701 50.000 0.00 0.00 0.00 4.45
104 105 3.662247 AGAAAACGTCTCTGGTACTGG 57.338 47.619 0.00 0.00 0.00 4.00
114 115 1.344763 CAGGGTCCTGAGAAAACGTCT 59.655 52.381 11.39 0.00 46.30 4.18
115 116 1.070289 ACAGGGTCCTGAGAAAACGTC 59.930 52.381 22.46 0.00 46.30 4.34
116 117 1.070289 GACAGGGTCCTGAGAAAACGT 59.930 52.381 22.46 0.00 46.30 3.99
117 118 1.797025 GACAGGGTCCTGAGAAAACG 58.203 55.000 22.46 0.00 46.30 3.60
128 129 2.484742 AACGGTAAATGGACAGGGTC 57.515 50.000 0.00 0.00 0.00 4.46
129 130 2.963599 AAACGGTAAATGGACAGGGT 57.036 45.000 0.00 0.00 0.00 4.34
130 131 3.057806 GTGAAAACGGTAAATGGACAGGG 60.058 47.826 0.00 0.00 0.00 4.45
131 132 3.818773 AGTGAAAACGGTAAATGGACAGG 59.181 43.478 0.00 0.00 0.00 4.00
132 133 4.274950 ACAGTGAAAACGGTAAATGGACAG 59.725 41.667 0.00 0.00 0.00 3.51
133 134 4.200874 ACAGTGAAAACGGTAAATGGACA 58.799 39.130 0.00 0.00 0.00 4.02
134 135 4.823790 ACAGTGAAAACGGTAAATGGAC 57.176 40.909 0.00 0.00 0.00 4.02
135 136 5.697633 GTCTACAGTGAAAACGGTAAATGGA 59.302 40.000 0.00 0.00 0.00 3.41
136 137 5.467399 TGTCTACAGTGAAAACGGTAAATGG 59.533 40.000 0.00 0.00 0.00 3.16
137 138 6.533819 TGTCTACAGTGAAAACGGTAAATG 57.466 37.500 0.00 0.00 0.00 2.32
138 139 6.932400 TGATGTCTACAGTGAAAACGGTAAAT 59.068 34.615 0.00 0.00 0.00 1.40
139 140 6.201425 GTGATGTCTACAGTGAAAACGGTAAA 59.799 38.462 0.00 0.00 0.00 2.01
140 141 5.693104 GTGATGTCTACAGTGAAAACGGTAA 59.307 40.000 0.00 0.00 0.00 2.85
141 142 5.010314 AGTGATGTCTACAGTGAAAACGGTA 59.990 40.000 0.00 0.00 0.00 4.02
142 143 4.056050 GTGATGTCTACAGTGAAAACGGT 58.944 43.478 0.00 0.00 0.00 4.83
143 144 4.150627 CAGTGATGTCTACAGTGAAAACGG 59.849 45.833 0.00 0.00 40.01 4.44
144 145 4.376413 GCAGTGATGTCTACAGTGAAAACG 60.376 45.833 0.00 0.00 40.01 3.60
145 146 4.752101 AGCAGTGATGTCTACAGTGAAAAC 59.248 41.667 0.00 0.00 40.01 2.43
146 147 4.960938 AGCAGTGATGTCTACAGTGAAAA 58.039 39.130 0.00 0.00 40.01 2.29
147 148 4.607293 AGCAGTGATGTCTACAGTGAAA 57.393 40.909 0.00 0.00 40.01 2.69
148 149 5.185828 ACATAGCAGTGATGTCTACAGTGAA 59.814 40.000 0.00 0.00 40.01 3.18
149 150 4.706962 ACATAGCAGTGATGTCTACAGTGA 59.293 41.667 0.00 0.00 40.01 3.41
150 151 5.003692 ACATAGCAGTGATGTCTACAGTG 57.996 43.478 0.00 0.00 40.40 3.66
151 152 5.667539 AACATAGCAGTGATGTCTACAGT 57.332 39.130 0.00 0.00 36.50 3.55
152 153 8.546244 CAATAAACATAGCAGTGATGTCTACAG 58.454 37.037 0.00 0.00 36.50 2.74
153 154 8.040727 ACAATAAACATAGCAGTGATGTCTACA 58.959 33.333 0.00 0.00 36.50 2.74
154 155 8.425577 ACAATAAACATAGCAGTGATGTCTAC 57.574 34.615 0.00 0.00 36.50 2.59
155 156 7.710907 GGACAATAAACATAGCAGTGATGTCTA 59.289 37.037 0.00 0.00 36.50 2.59
156 157 6.540189 GGACAATAAACATAGCAGTGATGTCT 59.460 38.462 0.00 0.00 36.50 3.41
157 158 6.238484 GGGACAATAAACATAGCAGTGATGTC 60.238 42.308 0.00 0.00 36.50 3.06
158 159 5.590259 GGGACAATAAACATAGCAGTGATGT 59.410 40.000 0.00 0.00 39.22 3.06
159 160 5.589855 TGGGACAATAAACATAGCAGTGATG 59.410 40.000 0.00 0.00 31.92 3.07
160 161 5.754782 TGGGACAATAAACATAGCAGTGAT 58.245 37.500 0.00 0.00 31.92 3.06
161 162 5.172687 TGGGACAATAAACATAGCAGTGA 57.827 39.130 0.00 0.00 31.92 3.41
162 163 4.943705 ACTGGGACAATAAACATAGCAGTG 59.056 41.667 0.00 0.00 38.70 3.66
163 164 4.943705 CACTGGGACAATAAACATAGCAGT 59.056 41.667 0.00 0.00 38.70 4.40
164 165 4.943705 ACACTGGGACAATAAACATAGCAG 59.056 41.667 0.00 0.00 38.70 4.24
165 166 4.917385 ACACTGGGACAATAAACATAGCA 58.083 39.130 0.00 0.00 38.70 3.49
166 167 5.897377 AACACTGGGACAATAAACATAGC 57.103 39.130 0.00 0.00 38.70 2.97
167 168 9.787532 CAATAAACACTGGGACAATAAACATAG 57.212 33.333 0.00 0.00 38.70 2.23
168 169 9.521841 TCAATAAACACTGGGACAATAAACATA 57.478 29.630 0.00 0.00 38.70 2.29
169 170 8.415950 TCAATAAACACTGGGACAATAAACAT 57.584 30.769 0.00 0.00 38.70 2.71
170 171 7.825331 TCAATAAACACTGGGACAATAAACA 57.175 32.000 0.00 0.00 38.70 2.83
171 172 8.303876 ACATCAATAAACACTGGGACAATAAAC 58.696 33.333 0.00 0.00 38.70 2.01
172 173 8.303156 CACATCAATAAACACTGGGACAATAAA 58.697 33.333 0.00 0.00 38.70 1.40
173 174 7.450014 ACACATCAATAAACACTGGGACAATAA 59.550 33.333 0.00 0.00 38.70 1.40
174 175 6.945435 ACACATCAATAAACACTGGGACAATA 59.055 34.615 0.00 0.00 38.70 1.90
175 176 5.774690 ACACATCAATAAACACTGGGACAAT 59.225 36.000 0.00 0.00 38.70 2.71
176 177 5.136828 ACACATCAATAAACACTGGGACAA 58.863 37.500 0.00 0.00 38.70 3.18
177 178 4.724399 ACACATCAATAAACACTGGGACA 58.276 39.130 0.00 0.00 0.00 4.02
178 179 5.460646 CAACACATCAATAAACACTGGGAC 58.539 41.667 0.00 0.00 0.00 4.46
179 180 4.022416 GCAACACATCAATAAACACTGGGA 60.022 41.667 0.00 0.00 0.00 4.37
180 181 4.236935 GCAACACATCAATAAACACTGGG 58.763 43.478 0.00 0.00 0.00 4.45
181 182 4.869215 TGCAACACATCAATAAACACTGG 58.131 39.130 0.00 0.00 0.00 4.00
182 183 5.747675 TGTTGCAACACATCAATAAACACTG 59.252 36.000 27.96 0.00 33.17 3.66
183 184 5.900425 TGTTGCAACACATCAATAAACACT 58.100 33.333 27.96 0.00 33.17 3.55
184 185 6.768029 ATGTTGCAACACATCAATAAACAC 57.232 33.333 33.29 0.29 42.51 3.32
185 186 8.463456 CATATGTTGCAACACATCAATAAACA 57.537 30.769 33.29 7.99 42.51 2.83
201 202 6.573664 TTTAGGATACCATGCATATGTTGC 57.426 37.500 0.00 0.00 46.14 4.17
202 203 9.414295 CAAATTTAGGATACCATGCATATGTTG 57.586 33.333 0.00 2.92 32.21 3.33
203 204 9.146586 ACAAATTTAGGATACCATGCATATGTT 57.853 29.630 0.00 0.00 32.21 2.71
204 205 8.579006 CACAAATTTAGGATACCATGCATATGT 58.421 33.333 0.00 2.22 32.21 2.29
205 206 7.543172 GCACAAATTTAGGATACCATGCATATG 59.457 37.037 0.00 0.00 37.17 1.78
206 207 7.575532 CGCACAAATTTAGGATACCATGCATAT 60.576 37.037 0.00 0.00 37.17 1.78
207 208 6.293900 CGCACAAATTTAGGATACCATGCATA 60.294 38.462 0.00 0.00 37.17 3.14
208 209 5.507817 CGCACAAATTTAGGATACCATGCAT 60.508 40.000 0.00 0.00 37.17 3.96
209 210 4.202000 CGCACAAATTTAGGATACCATGCA 60.202 41.667 0.00 0.00 37.17 3.96
210 211 4.036262 TCGCACAAATTTAGGATACCATGC 59.964 41.667 0.00 0.00 37.17 4.06
211 212 5.749596 TCGCACAAATTTAGGATACCATG 57.250 39.130 0.00 0.00 37.17 3.66
212 213 5.241506 CCATCGCACAAATTTAGGATACCAT 59.758 40.000 0.00 0.00 37.17 3.55
213 214 4.578516 CCATCGCACAAATTTAGGATACCA 59.421 41.667 0.00 0.00 37.17 3.25
214 215 4.819630 TCCATCGCACAAATTTAGGATACC 59.180 41.667 0.00 0.00 37.17 2.73
215 216 6.560253 ATCCATCGCACAAATTTAGGATAC 57.440 37.500 0.00 0.00 33.15 2.24
216 217 8.684386 TTAATCCATCGCACAAATTTAGGATA 57.316 30.769 0.00 0.00 33.75 2.59
217 218 7.581213 TTAATCCATCGCACAAATTTAGGAT 57.419 32.000 0.00 0.00 36.25 3.24
218 219 7.397892 TTTAATCCATCGCACAAATTTAGGA 57.602 32.000 0.00 0.00 0.00 2.94
219 220 9.912634 ATATTTAATCCATCGCACAAATTTAGG 57.087 29.630 0.00 0.00 0.00 2.69
224 225 8.730680 GGTAGATATTTAATCCATCGCACAAAT 58.269 33.333 0.00 0.00 0.00 2.32
225 226 7.936847 AGGTAGATATTTAATCCATCGCACAAA 59.063 33.333 0.00 0.00 0.00 2.83
226 227 7.450074 AGGTAGATATTTAATCCATCGCACAA 58.550 34.615 0.00 0.00 0.00 3.33
227 228 7.004555 AGGTAGATATTTAATCCATCGCACA 57.995 36.000 0.00 0.00 0.00 4.57
228 229 7.602644 TCAAGGTAGATATTTAATCCATCGCAC 59.397 37.037 0.00 0.00 0.00 5.34
229 230 7.676004 TCAAGGTAGATATTTAATCCATCGCA 58.324 34.615 0.00 0.00 0.00 5.10
230 231 8.547967 TTCAAGGTAGATATTTAATCCATCGC 57.452 34.615 0.00 0.00 0.00 4.58
231 232 9.929180 TCTTCAAGGTAGATATTTAATCCATCG 57.071 33.333 0.00 0.00 0.00 3.84
240 241 7.980099 CGTGGTAAGTCTTCAAGGTAGATATTT 59.020 37.037 0.00 0.00 0.00 1.40
241 242 7.341256 TCGTGGTAAGTCTTCAAGGTAGATATT 59.659 37.037 0.00 0.00 0.00 1.28
242 243 6.832384 TCGTGGTAAGTCTTCAAGGTAGATAT 59.168 38.462 0.00 0.00 0.00 1.63
243 244 6.182627 TCGTGGTAAGTCTTCAAGGTAGATA 58.817 40.000 0.00 0.00 0.00 1.98
244 245 5.014858 TCGTGGTAAGTCTTCAAGGTAGAT 58.985 41.667 0.00 0.00 0.00 1.98
278 279 3.391296 TGAGCCAAGGTCACTTAGACTTT 59.609 43.478 0.00 0.00 46.25 2.66
310 312 4.899457 TCTGAAGAAACTTAGTCCTCACCA 59.101 41.667 0.00 0.00 0.00 4.17
654 660 2.673368 AGTTGGCGAAATTTAGAGCGAG 59.327 45.455 2.11 0.00 0.00 5.03
657 663 4.419522 TGAAGTTGGCGAAATTTAGAGC 57.580 40.909 2.11 3.60 0.00 4.09
664 670 3.679389 ACTCTGATGAAGTTGGCGAAAT 58.321 40.909 0.00 0.00 0.00 2.17
670 676 4.058124 TCGTCAAACTCTGATGAAGTTGG 58.942 43.478 0.00 0.00 45.30 3.77
730 742 0.677842 AAGTTTACTCTCACGCCGGT 59.322 50.000 1.90 0.00 0.00 5.28
748 760 3.531538 CTTAGGGATAGTGAAAGCGCAA 58.468 45.455 11.47 0.00 0.00 4.85
802 986 4.901250 AGAAACCATTGATTTTGTGGGTCT 59.099 37.500 0.00 0.00 37.33 3.85
935 1123 2.807967 GGCAGCGAATATGCATGTTAGA 59.192 45.455 18.09 0.00 45.68 2.10
1047 1235 0.691078 GGAGGGTGAGGAGCATGGTA 60.691 60.000 0.00 0.00 0.00 3.25
1048 1236 1.997874 GGAGGGTGAGGAGCATGGT 60.998 63.158 0.00 0.00 0.00 3.55
1207 1395 4.698780 GTGGTTAGGAAGTAATTCCACACC 59.301 45.833 25.11 25.11 43.54 4.16
1383 1571 9.845740 ATACATTATTTGTAGTAACATGCCAGA 57.154 29.630 0.00 0.00 43.87 3.86
1597 1785 1.909302 ACATCGTCACTGGAGGGATTT 59.091 47.619 0.00 0.00 0.00 2.17
1609 1797 5.358725 TGCTAGTGGTATAGAAACATCGTCA 59.641 40.000 0.00 0.00 0.00 4.35
1647 1835 4.270834 AGAGCTTCAGACCGTATACTGAA 58.729 43.478 0.00 0.00 46.36 3.02
1655 1843 0.605589 CCAAGAGAGCTTCAGACCGT 59.394 55.000 0.00 0.00 30.14 4.83
2148 2344 1.176527 CCGTCCATTTGGTGCAGAAT 58.823 50.000 0.00 0.00 36.34 2.40
2167 2363 5.768164 TGTTAGACCTTCTCCAACATTTTCC 59.232 40.000 0.00 0.00 0.00 3.13
2236 2433 3.523606 AGCAATTGTTGTGCAAAGACA 57.476 38.095 7.40 0.00 44.74 3.41
2420 2617 9.433153 CATCATGTGTTACTATATCAAGCAGAT 57.567 33.333 0.00 0.00 40.86 2.90
2440 2637 7.115236 CACAACAGAAACATGTAAACCATCATG 59.885 37.037 0.00 0.00 44.56 3.07
2441 2638 7.014134 TCACAACAGAAACATGTAAACCATCAT 59.986 33.333 0.00 0.00 31.70 2.45
2442 2639 6.319911 TCACAACAGAAACATGTAAACCATCA 59.680 34.615 0.00 0.00 31.70 3.07
2443 2640 6.734137 TCACAACAGAAACATGTAAACCATC 58.266 36.000 0.00 0.00 31.70 3.51
2444 2641 6.707440 TCACAACAGAAACATGTAAACCAT 57.293 33.333 0.00 0.00 31.70 3.55
2445 2642 6.071896 TGTTCACAACAGAAACATGTAAACCA 60.072 34.615 0.00 0.00 36.25 3.67
2446 2643 6.252655 GTGTTCACAACAGAAACATGTAAACC 59.747 38.462 0.00 0.00 43.10 3.27
2470 2679 1.614317 GCTTAACATCACTGGCTGGGT 60.614 52.381 0.00 0.00 0.00 4.51
2786 2995 3.081061 TGACGGTAAATGAGCAGCAAAT 58.919 40.909 0.00 0.00 0.00 2.32
2787 2996 2.499197 TGACGGTAAATGAGCAGCAAA 58.501 42.857 0.00 0.00 0.00 3.68
2788 2997 2.177394 TGACGGTAAATGAGCAGCAA 57.823 45.000 0.00 0.00 0.00 3.91
2789 2998 2.401583 ATGACGGTAAATGAGCAGCA 57.598 45.000 0.00 0.00 0.00 4.41
2790 2999 3.764885 AAATGACGGTAAATGAGCAGC 57.235 42.857 0.00 0.00 0.00 5.25
2885 3200 2.366435 GTAGCTAGCCCCCACCCA 60.366 66.667 12.13 0.00 0.00 4.51
2911 3226 1.608590 CATCACTGCCGAAAACAACCT 59.391 47.619 0.00 0.00 0.00 3.50
2960 3275 5.070981 TGAATGATTACCCTGATGAGACTCC 59.929 44.000 0.00 0.00 0.00 3.85
2963 3278 6.769822 ACAATGAATGATTACCCTGATGAGAC 59.230 38.462 0.00 0.00 0.00 3.36
3174 3489 8.481314 ACTCTAGAATGACTATTCAGCATTTCA 58.519 33.333 0.00 0.00 44.14 2.69
3321 3636 7.130681 TGTGAAACCCTTTATCCACATTTTT 57.869 32.000 0.00 0.00 34.36 1.94
3360 3675 6.207691 TCTTAGTAAAAATTGAGGCATGCC 57.792 37.500 30.12 30.12 0.00 4.40
3437 3752 6.959639 TCATTTCTACCAATGGCCTATTTC 57.040 37.500 3.32 0.00 35.22 2.17
3489 3804 4.277476 TCCATTAAATCCGAGCCAATGTT 58.723 39.130 0.00 0.00 0.00 2.71
3491 3806 4.580167 TCTTCCATTAAATCCGAGCCAATG 59.420 41.667 0.00 0.00 0.00 2.82
3525 3840 8.134202 TCACTTTCATTCCATAGTTGACTAGA 57.866 34.615 0.00 0.00 0.00 2.43
3541 3856 9.582431 CATTGCTCTAATCAATTTCACTTTCAT 57.418 29.630 0.00 0.00 32.30 2.57
3576 3892 6.653320 CCAGTTGAAGTGGCAAACTAATACTA 59.347 38.462 6.05 0.00 38.56 1.82
3585 3901 4.202202 CCAATAACCAGTTGAAGTGGCAAA 60.202 41.667 18.62 5.11 42.53 3.68
3617 3933 0.108138 GGCTGCTGACGACTTATGGT 60.108 55.000 0.00 0.00 0.00 3.55
3639 3955 6.446318 CAGCACAGTATTACAACAAATTGGT 58.554 36.000 0.00 0.00 40.42 3.67
3682 3998 5.052481 TGCAATCTGTCTACATGTCATAGC 58.948 41.667 0.00 0.00 0.00 2.97
3687 4003 3.060003 GCGATGCAATCTGTCTACATGTC 60.060 47.826 0.00 0.00 42.58 3.06
3868 4184 3.130869 GCCTGCATGAACCACATCAATAA 59.869 43.478 0.00 0.00 37.07 1.40
3900 4216 6.069673 ACCACTCACCATATTACCTGAATTCA 60.070 38.462 8.12 8.12 0.00 2.57
3930 4246 8.301002 TCCAAGCACAATATTAACAAGTAAACC 58.699 33.333 0.00 0.00 0.00 3.27
3993 4309 5.438761 AAATGTAACTCACTCCAACAAGC 57.561 39.130 0.00 0.00 0.00 4.01
4272 4588 6.095021 TGTGACGTAGCTTAATCTCATACAGT 59.905 38.462 0.00 0.00 0.00 3.55
4275 4591 7.648112 TCAATGTGACGTAGCTTAATCTCATAC 59.352 37.037 0.00 0.00 0.00 2.39
4327 4643 6.944862 GGAATTATGATCCTTGGACATAGCTT 59.055 38.462 0.00 1.84 33.98 3.74
4362 4678 1.607767 CCGGCTTGTTTGGGGAAATTG 60.608 52.381 0.00 0.00 0.00 2.32
4368 4684 3.683937 CAGCCGGCTTGTTTGGGG 61.684 66.667 30.60 9.35 0.00 4.96
4414 4730 3.004862 GTCGAAACCATGTAATCCGGTT 58.995 45.455 0.00 0.00 44.90 4.44
4456 4772 3.320673 AACTAACTAGCAGCTCACACC 57.679 47.619 0.00 0.00 0.00 4.16
4510 4826 4.374689 TGCAAGACCCAACCTTTACATA 57.625 40.909 0.00 0.00 0.00 2.29
4541 4857 9.318041 CTTGACAATTACAATAGTTCGAAACAG 57.682 33.333 0.00 0.00 0.00 3.16
4553 4869 6.344500 TGTTTTGTGCCTTGACAATTACAAT 58.656 32.000 10.77 0.00 35.77 2.71
4573 4889 4.101430 ACTCCACATGGCAAGAAAATGTTT 59.899 37.500 0.00 0.00 32.27 2.83
4626 4942 9.767684 TGTAATGCTGTCTATTAATTTCAAACG 57.232 29.630 0.00 0.00 0.00 3.60
4645 4961 6.775629 TCCCCTTTCCTAATACAATGTAATGC 59.224 38.462 0.00 0.00 0.00 3.56
4648 4964 7.286775 GCATTCCCCTTTCCTAATACAATGTAA 59.713 37.037 0.00 0.00 0.00 2.41
4692 5008 0.953471 TTTGATGGTCGGCGTTGGAG 60.953 55.000 6.85 0.00 0.00 3.86
4726 5042 1.153469 GCGGCAGAAGGAAGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
4752 5068 0.246635 ACATGTTCTCCTCGGTTCCG 59.753 55.000 4.74 4.74 0.00 4.30
4809 5125 5.139435 TGATCTTTCGGGCTAGTATGATG 57.861 43.478 0.00 0.00 0.00 3.07
4815 5131 3.181461 CCAAGATGATCTTTCGGGCTAGT 60.181 47.826 4.67 0.00 33.78 2.57
4818 5134 1.748591 GCCAAGATGATCTTTCGGGCT 60.749 52.381 21.25 0.00 38.97 5.19
4846 5162 0.657368 GCTTTGACGCGGTGAGTTTG 60.657 55.000 12.47 0.00 0.00 2.93
4869 5185 0.957395 AGCACAACATCTTGGCCTCG 60.957 55.000 3.32 0.00 0.00 4.63
4936 5252 0.604243 TGCAACGTTTGGTAGCGGAT 60.604 50.000 0.00 0.00 0.00 4.18
4940 5256 1.440353 CGCTGCAACGTTTGGTAGC 60.440 57.895 15.64 15.64 39.05 3.58
4961 5277 6.702282 GTCTGCCGCTATTAACTAATCTTTCT 59.298 38.462 0.00 0.00 0.00 2.52
4985 5301 1.336887 CCTTCGTCGTGTCCTCATTGT 60.337 52.381 0.00 0.00 0.00 2.71
4999 5315 1.941999 GCCGTGTAGGTAGCCTTCGT 61.942 60.000 0.00 0.00 43.70 3.85
5001 5317 1.226888 CGCCGTGTAGGTAGCCTTC 60.227 63.158 0.00 0.00 43.70 3.46
5002 5318 2.718073 CCGCCGTGTAGGTAGCCTT 61.718 63.158 0.00 0.00 43.70 4.35
5015 5331 2.048877 AAGGTGTCGTTACCGCCG 60.049 61.111 5.44 0.00 45.56 6.46
5021 5337 4.866508 ACTTCAGATCAAGGTGTCGTTA 57.133 40.909 0.00 0.00 0.00 3.18
5022 5338 3.753294 ACTTCAGATCAAGGTGTCGTT 57.247 42.857 0.00 0.00 0.00 3.85
5039 5355 3.535561 CAACAATCCCAGCGATCTACTT 58.464 45.455 0.00 0.00 0.00 2.24
5042 5358 1.837439 ACCAACAATCCCAGCGATCTA 59.163 47.619 0.00 0.00 0.00 1.98
5059 5375 4.291792 TCCAATTCTTCCCTATCGTACCA 58.708 43.478 0.00 0.00 0.00 3.25
5063 5379 4.503296 CCGAATCCAATTCTTCCCTATCGT 60.503 45.833 0.00 0.00 37.13 3.73
5067 5383 2.441750 CCCCGAATCCAATTCTTCCCTA 59.558 50.000 0.00 0.00 37.13 3.53
5138 5476 3.740128 ATCACACCAGCGCCGGATC 62.740 63.158 18.59 0.00 0.00 3.36
5160 5498 2.965147 TTTGATCCACACAGCGCGC 61.965 57.895 26.66 26.66 0.00 6.86
5161 5499 1.154413 GTTTGATCCACACAGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
5162 5500 0.593128 AAGTTTGATCCACACAGCGC 59.407 50.000 0.00 0.00 0.00 5.92
5163 5501 4.685169 ATAAAGTTTGATCCACACAGCG 57.315 40.909 0.00 0.00 0.00 5.18
5164 5502 6.446318 TCAAATAAAGTTTGATCCACACAGC 58.554 36.000 0.00 0.00 33.90 4.40
5165 5503 9.480053 AATTCAAATAAAGTTTGATCCACACAG 57.520 29.630 0.00 0.00 38.12 3.66
5166 5504 9.258826 CAATTCAAATAAAGTTTGATCCACACA 57.741 29.630 0.00 0.00 38.12 3.72
5167 5505 8.223100 GCAATTCAAATAAAGTTTGATCCACAC 58.777 33.333 0.00 0.00 38.12 3.82
5192 5530 2.354821 CCGTTAGTAGAGGGCAATTTGC 59.645 50.000 13.04 13.04 44.08 3.68
5205 5543 8.818622 AATGCTATCCTATATGTCCGTTAGTA 57.181 34.615 0.00 0.00 0.00 1.82
5206 5544 7.719871 AATGCTATCCTATATGTCCGTTAGT 57.280 36.000 0.00 0.00 0.00 2.24
5207 5545 8.251026 TCAAATGCTATCCTATATGTCCGTTAG 58.749 37.037 0.00 0.00 0.00 2.34
5208 5546 8.129496 TCAAATGCTATCCTATATGTCCGTTA 57.871 34.615 0.00 0.00 0.00 3.18
5209 5547 7.004555 TCAAATGCTATCCTATATGTCCGTT 57.995 36.000 0.00 0.00 0.00 4.44
5237 5575 2.352032 GGACAGGGACAGGAGTCGG 61.352 68.421 0.00 0.00 45.92 4.79
5240 5578 2.997897 GCGGACAGGGACAGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
5241 5579 4.135153 CGCGGACAGGGACAGGAG 62.135 72.222 0.00 0.00 34.27 3.69
5265 5603 2.046285 CGGCAAATTTCCTCCCGCT 61.046 57.895 0.00 0.00 31.87 5.52
5282 5620 1.353103 GCATCTCCAACGCCAATCG 59.647 57.895 0.00 0.00 45.38 3.34
5283 5621 1.027357 ATGCATCTCCAACGCCAATC 58.973 50.000 0.00 0.00 0.00 2.67
5350 5688 2.559668 GCTGTAAGGGGGTAAAACCAAC 59.440 50.000 0.00 0.00 41.02 3.77
5369 5707 2.190578 GGATTGGCTAGGTGCGCT 59.809 61.111 9.73 0.00 44.05 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.