Multiple sequence alignment - TraesCS7A01G051800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G051800 chr7A 100.000 3598 0 0 1 3598 25005418 25009015 0.000000e+00 6645.0
1 TraesCS7A01G051800 chr7A 77.317 1036 191 28 987 2012 24626885 24627886 4.030000e-159 571.0
2 TraesCS7A01G051800 chr7A 79.226 775 135 20 1258 2027 24539722 24538969 1.920000e-142 516.0
3 TraesCS7A01G051800 chr7A 78.138 709 120 24 1323 2022 91910616 91911298 5.560000e-113 418.0
4 TraesCS7A01G051800 chr7A 83.481 339 51 5 2291 2624 26838633 26838295 9.700000e-81 311.0
5 TraesCS7A01G051800 chr4A 92.747 2137 136 13 823 2948 708916960 708914832 0.000000e+00 3070.0
6 TraesCS7A01G051800 chr4A 92.418 976 66 5 1979 2948 708914382 708913409 0.000000e+00 1386.0
7 TraesCS7A01G051800 chr4A 88.136 767 27 10 1 741 708917686 708916958 0.000000e+00 854.0
8 TraesCS7A01G051800 chr4A 79.472 1023 173 25 1052 2041 710413895 710412877 0.000000e+00 691.0
9 TraesCS7A01G051800 chr4A 85.736 659 66 9 2946 3598 708774956 708774320 0.000000e+00 671.0
10 TraesCS7A01G051800 chr4A 81.061 396 67 7 2235 2624 710412649 710412256 3.490000e-80 309.0
11 TraesCS7A01G051800 chrUn 91.906 1705 121 11 490 2182 90119251 90117552 0.000000e+00 2368.0
12 TraesCS7A01G051800 chrUn 93.487 1428 83 7 2180 3598 90117395 90115969 0.000000e+00 2113.0
13 TraesCS7A01G051800 chrUn 80.818 318 19 13 131 421 90119565 90119263 1.010000e-50 211.0
14 TraesCS7A01G051800 chr1B 79.790 1143 181 39 999 2107 558495621 558496747 0.000000e+00 785.0
15 TraesCS7A01G051800 chr1B 81.132 424 67 9 2249 2663 558285508 558285927 9.630000e-86 327.0
16 TraesCS7A01G051800 chr1A 78.479 1078 169 43 962 2027 510672460 510673486 0.000000e+00 647.0
17 TraesCS7A01G051800 chr1A 80.907 838 133 20 1266 2090 510803507 510804330 1.410000e-178 636.0
18 TraesCS7A01G051800 chr1A 81.527 406 66 4 2344 2743 510804581 510804983 3.460000e-85 326.0
19 TraesCS7A01G051800 chr1A 80.941 425 67 9 2249 2663 510673527 510673947 1.250000e-84 324.0
20 TraesCS7A01G051800 chr7D 77.629 1046 196 29 987 2012 23509732 23510759 5.140000e-168 601.0
21 TraesCS7A01G051800 chr7D 77.997 709 130 17 1324 2022 90552201 90552893 4.300000e-114 422.0
22 TraesCS7A01G051800 chr7D 79.924 528 83 18 2235 2745 26002164 26001643 2.040000e-97 366.0
23 TraesCS7A01G051800 chr2D 85.938 64 8 1 3181 3243 386839151 386839214 2.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G051800 chr7A 25005418 25009015 3597 False 6645.0 6645 100.000000 1 3598 1 chr7A.!!$F2 3597
1 TraesCS7A01G051800 chr7A 24626885 24627886 1001 False 571.0 571 77.317000 987 2012 1 chr7A.!!$F1 1025
2 TraesCS7A01G051800 chr7A 24538969 24539722 753 True 516.0 516 79.226000 1258 2027 1 chr7A.!!$R1 769
3 TraesCS7A01G051800 chr7A 91910616 91911298 682 False 418.0 418 78.138000 1323 2022 1 chr7A.!!$F3 699
4 TraesCS7A01G051800 chr4A 708913409 708917686 4277 True 1770.0 3070 91.100333 1 2948 3 chr4A.!!$R2 2947
5 TraesCS7A01G051800 chr4A 708774320 708774956 636 True 671.0 671 85.736000 2946 3598 1 chr4A.!!$R1 652
6 TraesCS7A01G051800 chr4A 710412256 710413895 1639 True 500.0 691 80.266500 1052 2624 2 chr4A.!!$R3 1572
7 TraesCS7A01G051800 chrUn 90115969 90119565 3596 True 1564.0 2368 88.737000 131 3598 3 chrUn.!!$R1 3467
8 TraesCS7A01G051800 chr1B 558495621 558496747 1126 False 785.0 785 79.790000 999 2107 1 chr1B.!!$F2 1108
9 TraesCS7A01G051800 chr1A 510672460 510673947 1487 False 485.5 647 79.710000 962 2663 2 chr1A.!!$F1 1701
10 TraesCS7A01G051800 chr1A 510803507 510804983 1476 False 481.0 636 81.217000 1266 2743 2 chr1A.!!$F2 1477
11 TraesCS7A01G051800 chr7D 23509732 23510759 1027 False 601.0 601 77.629000 987 2012 1 chr7D.!!$F1 1025
12 TraesCS7A01G051800 chr7D 90552201 90552893 692 False 422.0 422 77.997000 1324 2022 1 chr7D.!!$F2 698
13 TraesCS7A01G051800 chr7D 26001643 26002164 521 True 366.0 366 79.924000 2235 2745 1 chr7D.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 373 0.462225 TCGTTTGCCGAGGTGTTCAA 60.462 50.000 0.00 0.0 41.6 2.69 F
602 628 0.882042 AGAGCAGCAAGTTGTGACCG 60.882 55.000 4.48 0.0 0.0 4.79 F
1026 1066 1.078143 CACAGGGGCAGCTAGAACC 60.078 63.158 0.00 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1449 0.034337 CCGGAAAAACTCCCTCGACA 59.966 55.000 0.0 0.0 41.87 4.35 R
1457 1543 1.680314 GTCGTTCCCGTACCCCTCT 60.680 63.158 0.0 0.0 35.01 3.69 R
2921 3333 0.179108 GAGACGGGATGTGTGTAGCC 60.179 60.000 0.0 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 7.696992 AATACCCAATTTCGAACTACATGTT 57.303 32.000 2.30 0.00 42.38 2.71
81 82 8.666573 TCGAACTACATGTTTACAAAAACTGAA 58.333 29.630 2.30 0.00 44.44 3.02
270 271 5.180492 CCTACTGCCGATAGTTTTTGTTTGA 59.820 40.000 0.00 0.00 32.19 2.69
271 272 5.705609 ACTGCCGATAGTTTTTGTTTGAT 57.294 34.783 0.00 0.00 0.00 2.57
320 321 7.255451 CCTGTTTGCCTAGTTTCATTTTCTACA 60.255 37.037 0.00 0.00 0.00 2.74
357 371 4.036977 TCGTTTGCCGAGGTGTTC 57.963 55.556 0.00 0.00 41.60 3.18
359 373 0.462225 TCGTTTGCCGAGGTGTTCAA 60.462 50.000 0.00 0.00 41.60 2.69
460 486 6.154363 TGTTTTCACCATTGGTCTCTTTTTCT 59.846 34.615 5.04 0.00 31.02 2.52
461 487 6.391227 TTTCACCATTGGTCTCTTTTTCTC 57.609 37.500 5.04 0.00 31.02 2.87
465 491 5.945784 CACCATTGGTCTCTTTTTCTCCATA 59.054 40.000 5.04 0.00 31.02 2.74
467 493 6.183347 CCATTGGTCTCTTTTTCTCCATAGT 58.817 40.000 0.00 0.00 0.00 2.12
469 495 4.579869 TGGTCTCTTTTTCTCCATAGTGC 58.420 43.478 0.00 0.00 0.00 4.40
566 592 3.985877 TGGCATTTCCACGCTGAG 58.014 55.556 0.00 0.00 40.72 3.35
597 623 3.199880 AGTTGTAGAGCAGCAAGTTGT 57.800 42.857 4.48 0.00 0.00 3.32
598 624 2.874701 AGTTGTAGAGCAGCAAGTTGTG 59.125 45.455 4.48 3.17 0.00 3.33
599 625 2.872245 GTTGTAGAGCAGCAAGTTGTGA 59.128 45.455 4.48 0.00 0.00 3.58
600 626 2.483876 TGTAGAGCAGCAAGTTGTGAC 58.516 47.619 4.48 0.00 0.00 3.67
601 627 1.801178 GTAGAGCAGCAAGTTGTGACC 59.199 52.381 4.48 0.00 0.00 4.02
602 628 0.882042 AGAGCAGCAAGTTGTGACCG 60.882 55.000 4.48 0.00 0.00 4.79
603 629 2.050985 GCAGCAAGTTGTGACCGC 60.051 61.111 4.48 0.00 0.00 5.68
604 630 2.833533 GCAGCAAGTTGTGACCGCA 61.834 57.895 4.48 0.00 0.00 5.69
605 631 1.280746 CAGCAAGTTGTGACCGCAG 59.719 57.895 4.48 0.00 0.00 5.18
606 632 2.050985 GCAAGTTGTGACCGCAGC 60.051 61.111 4.48 0.00 0.00 5.25
607 633 2.833533 GCAAGTTGTGACCGCAGCA 61.834 57.895 4.48 0.00 0.00 4.41
608 634 1.280746 CAAGTTGTGACCGCAGCAG 59.719 57.895 0.00 0.00 0.00 4.24
715 753 3.079578 CTCAGTTGTTCCATGCATCAGT 58.920 45.455 0.00 0.00 0.00 3.41
791 829 7.848821 AATCATACCTAGATCCTAGGTCCTA 57.151 40.000 24.27 11.49 44.10 2.94
821 859 1.571919 CTGATTTCTAACCGGCTCCG 58.428 55.000 0.00 0.48 39.44 4.63
909 948 7.288810 AGCACAAAAGGTTTTCATCTCATTA 57.711 32.000 0.00 0.00 0.00 1.90
936 975 2.081585 GCAAAGAAGGGACCCAGGGT 62.082 60.000 12.53 12.53 39.44 4.34
946 985 2.197465 GGACCCAGGGTTATTGAGTCT 58.803 52.381 14.23 0.00 35.25 3.24
948 987 3.010250 GGACCCAGGGTTATTGAGTCTTT 59.990 47.826 14.23 0.00 35.25 2.52
949 988 4.508584 GGACCCAGGGTTATTGAGTCTTTT 60.509 45.833 14.23 0.00 35.25 2.27
951 990 6.402981 ACCCAGGGTTATTGAGTCTTTTAT 57.597 37.500 4.76 0.00 27.29 1.40
952 991 7.366191 GGACCCAGGGTTATTGAGTCTTTTATA 60.366 40.741 14.23 0.00 35.25 0.98
953 992 7.935405 ACCCAGGGTTATTGAGTCTTTTATAA 58.065 34.615 4.76 0.00 27.29 0.98
955 994 9.421399 CCCAGGGTTATTGAGTCTTTTATAAAT 57.579 33.333 0.00 0.00 0.00 1.40
1024 1064 1.492133 AAGCACAGGGGCAGCTAGAA 61.492 55.000 0.00 0.00 37.70 2.10
1026 1066 1.078143 CACAGGGGCAGCTAGAACC 60.078 63.158 0.00 0.00 0.00 3.62
1032 1072 4.643795 GCAGCTAGAACCATGCCA 57.356 55.556 0.00 0.00 32.49 4.92
1110 1150 1.999071 GCACGCACAAGGACCAACAA 61.999 55.000 0.00 0.00 0.00 2.83
1114 1154 1.680338 GCACAAGGACCAACAACTCT 58.320 50.000 0.00 0.00 0.00 3.24
1302 1363 5.163683 ACAAGATCAAAGCATGCATGTCTAC 60.164 40.000 26.79 10.97 0.00 2.59
1378 1449 1.885887 GATAGAGAGCATGAGAGCCGT 59.114 52.381 0.00 0.00 34.23 5.68
1457 1543 2.343758 GGCGAGCAGTTCCAGTCA 59.656 61.111 0.00 0.00 0.00 3.41
1629 1736 7.226720 AGAGTGATGTCGACTTACACAAATTTT 59.773 33.333 27.36 14.85 34.47 1.82
1633 1740 7.658167 TGATGTCGACTTACACAAATTTTCCTA 59.342 33.333 17.92 0.00 30.75 2.94
1636 1743 8.286800 TGTCGACTTACACAAATTTTCCTATTG 58.713 33.333 17.92 0.00 0.00 1.90
1823 1986 2.481622 GGAGAAGGCTCTTACTAACGCC 60.482 54.545 0.00 0.00 41.06 5.68
1910 2073 2.964464 TGGAACCGTTGTTACTGTCCTA 59.036 45.455 0.00 0.00 36.19 2.94
1973 2136 1.633945 GGAGTTTGGTGGGATGTACCT 59.366 52.381 0.00 0.00 39.01 3.08
1976 2139 2.159382 GTTTGGTGGGATGTACCTGTG 58.841 52.381 0.00 0.00 39.01 3.66
2129 2303 6.088016 TCCATTTCTCAGTGGTCAAAATTG 57.912 37.500 0.00 0.00 36.84 2.32
2131 2305 5.693104 CCATTTCTCAGTGGTCAAAATTGTG 59.307 40.000 0.00 0.00 0.00 3.33
2213 2600 7.493971 AGCCTGATCGTAGCATATCAAATATTC 59.506 37.037 4.51 0.00 31.97 1.75
2230 2617 9.529325 TCAAATATTCAAGTCTATTCTACCGTG 57.471 33.333 0.00 0.00 0.00 4.94
2274 2665 2.698855 ACATGTCCGGGATCTCAAAG 57.301 50.000 0.00 0.00 0.00 2.77
2277 2668 3.118738 ACATGTCCGGGATCTCAAAGTAC 60.119 47.826 0.00 0.00 0.00 2.73
2907 3319 6.986904 TTGGGTTCAACAAAATTTGGTAAC 57.013 33.333 10.71 10.21 34.12 2.50
2921 3333 1.000731 TGGTAACCGGGTGTCGTTAAG 59.999 52.381 0.00 0.00 37.11 1.85
2924 3336 1.761500 AACCGGGTGTCGTTAAGGCT 61.761 55.000 6.32 0.00 37.11 4.58
2927 3339 0.244450 CGGGTGTCGTTAAGGCTACA 59.756 55.000 0.00 0.00 0.00 2.74
2986 3832 5.335191 GCCCAAAATCAAGATCATATCCGTC 60.335 44.000 0.00 0.00 0.00 4.79
3072 4683 2.985751 CACACATGCACACACTAACAC 58.014 47.619 0.00 0.00 0.00 3.32
3124 4736 0.896940 AAGACCGGGTCGAAGTAGCA 60.897 55.000 20.87 0.00 37.67 3.49
3158 4770 3.909430 TGATGAAGTAACCACTGACGAC 58.091 45.455 0.00 0.00 34.36 4.34
3192 4804 2.291605 GGAAGGTTGCCTCCCACTAAAT 60.292 50.000 0.00 0.00 30.89 1.40
3265 4877 6.936279 TCTTTCACCATTACAAACAAAACCA 58.064 32.000 0.00 0.00 0.00 3.67
3267 4879 7.708752 TCTTTCACCATTACAAACAAAACCATC 59.291 33.333 0.00 0.00 0.00 3.51
3313 4925 1.772836 AAATTCATGGAGCTCCCTGC 58.227 50.000 29.95 5.46 43.29 4.85
3446 5063 1.279271 CCAGACGAGTCCTGGGAAATT 59.721 52.381 7.39 0.00 45.66 1.82
3452 5069 4.189231 ACGAGTCCTGGGAAATTTAATCG 58.811 43.478 5.08 5.08 0.00 3.34
3477 5094 0.105964 TCTAGGGGTGCCTAGAGCTG 60.106 60.000 0.00 0.00 42.40 4.24
3534 5151 8.641499 TCCATTTCTACACAACAAAACATTTC 57.359 30.769 0.00 0.00 0.00 2.17
3545 5162 6.915843 ACAACAAAACATTTCGACCTACATTC 59.084 34.615 0.00 0.00 0.00 2.67
3553 5170 2.616960 TCGACCTACATTCACATGTGC 58.383 47.619 21.38 2.70 43.92 4.57
3566 5183 2.413796 CACATGTGCCAATTGTTGCATC 59.586 45.455 13.94 7.25 40.07 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.904498 TGTAAACATGTAGTTCGAAATTGGG 58.096 36.000 2.37 0.00 40.26 4.12
57 58 9.783256 AGTTCAGTTTTTGTAAACATGTAGTTC 57.217 29.630 0.00 0.00 44.88 3.01
320 321 4.202326 ACGAGTGTCCCAGACAAAATACTT 60.202 41.667 0.00 0.00 44.49 2.24
460 486 1.496060 ATCAGGGAACGCACTATGGA 58.504 50.000 0.00 0.00 0.00 3.41
461 487 2.332063 AATCAGGGAACGCACTATGG 57.668 50.000 0.00 0.00 0.00 2.74
465 491 1.981256 ACAAAATCAGGGAACGCACT 58.019 45.000 0.00 0.00 0.00 4.40
467 493 4.920640 TTTAACAAAATCAGGGAACGCA 57.079 36.364 0.00 0.00 0.00 5.24
469 495 5.469479 AGCATTTAACAAAATCAGGGAACG 58.531 37.500 0.00 0.00 0.00 3.95
564 590 4.794655 GCTCTACAACTAGTATGCAGCCTC 60.795 50.000 0.00 0.00 34.37 4.70
566 592 3.181475 TGCTCTACAACTAGTATGCAGCC 60.181 47.826 0.00 0.00 37.24 4.85
597 623 1.737735 CGATCAACTGCTGCGGTCA 60.738 57.895 15.51 5.10 0.00 4.02
598 624 1.014044 TTCGATCAACTGCTGCGGTC 61.014 55.000 15.51 1.06 0.00 4.79
599 625 1.005037 TTCGATCAACTGCTGCGGT 60.005 52.632 8.62 8.62 0.00 5.68
600 626 1.712081 CTTCGATCAACTGCTGCGG 59.288 57.895 6.98 6.98 0.00 5.69
601 627 1.059994 GCTTCGATCAACTGCTGCG 59.940 57.895 0.00 0.00 0.00 5.18
602 628 0.373024 GAGCTTCGATCAACTGCTGC 59.627 55.000 4.58 0.00 33.83 5.25
603 629 1.005340 GGAGCTTCGATCAACTGCTG 58.995 55.000 4.58 0.00 33.83 4.41
604 630 0.610174 TGGAGCTTCGATCAACTGCT 59.390 50.000 0.00 0.00 36.63 4.24
605 631 1.596727 GATGGAGCTTCGATCAACTGC 59.403 52.381 0.00 0.00 32.72 4.40
606 632 3.122297 GAGATGGAGCTTCGATCAACTG 58.878 50.000 7.06 0.00 34.57 3.16
607 633 3.030291 AGAGATGGAGCTTCGATCAACT 58.970 45.455 7.06 4.01 34.57 3.16
608 634 3.122297 CAGAGATGGAGCTTCGATCAAC 58.878 50.000 7.06 2.32 34.57 3.18
715 753 8.868522 AAGTTCATGGATTTTCTCATCTACAA 57.131 30.769 0.00 0.00 0.00 2.41
791 829 4.518249 GTTAGAAATCAGGTGCTTAGCCT 58.482 43.478 0.29 0.00 36.66 4.58
821 859 2.074547 TCACGTACTAGGTTGCAAGC 57.925 50.000 20.81 20.81 0.00 4.01
883 922 6.899393 TGAGATGAAAACCTTTTGTGCTAT 57.101 33.333 0.00 0.00 0.00 2.97
884 923 6.899393 ATGAGATGAAAACCTTTTGTGCTA 57.101 33.333 0.00 0.00 0.00 3.49
900 939 8.824781 CCTTCTTTGCCGATATATAATGAGATG 58.175 37.037 0.00 0.00 0.00 2.90
901 940 7.989741 CCCTTCTTTGCCGATATATAATGAGAT 59.010 37.037 0.00 0.00 0.00 2.75
909 948 3.009143 GGGTCCCTTCTTTGCCGATATAT 59.991 47.826 0.00 0.00 0.00 0.86
951 990 9.739276 AGAAGAATCTGGAATGTTGTACATTTA 57.261 29.630 6.51 0.06 40.64 1.40
952 991 8.517878 CAGAAGAATCTGGAATGTTGTACATTT 58.482 33.333 6.51 0.00 45.65 2.32
953 992 8.048534 CAGAAGAATCTGGAATGTTGTACATT 57.951 34.615 4.82 4.82 45.98 2.71
1032 1072 2.033757 CCAGCAAGCTCCTGCACT 59.966 61.111 12.73 0.00 45.18 4.40
1110 1150 1.303888 TACAACCGCCGAGGAGAGT 60.304 57.895 3.89 2.47 45.00 3.24
1114 1154 4.124351 CGCTACAACCGCCGAGGA 62.124 66.667 3.89 0.00 45.00 3.71
1302 1363 2.609459 GGAACATACATGTGAAGCGAGG 59.391 50.000 9.11 0.00 41.61 4.63
1355 1426 2.029110 GGCTCTCATGCTCTCTATCACC 60.029 54.545 0.00 0.00 0.00 4.02
1378 1449 0.034337 CCGGAAAAACTCCCTCGACA 59.966 55.000 0.00 0.00 41.87 4.35
1457 1543 1.680314 GTCGTTCCCGTACCCCTCT 60.680 63.158 0.00 0.00 35.01 3.69
1629 1736 5.076873 CAACAAACCTTCCTTCCAATAGGA 58.923 41.667 0.00 0.00 42.56 2.94
1633 1740 4.344968 CCTTCAACAAACCTTCCTTCCAAT 59.655 41.667 0.00 0.00 0.00 3.16
1636 1743 3.562182 TCCTTCAACAAACCTTCCTTCC 58.438 45.455 0.00 0.00 0.00 3.46
1643 1750 8.017418 TGTTTTAATGATCCTTCAACAAACCT 57.983 30.769 6.15 0.00 34.96 3.50
1645 1752 9.260002 ACATGTTTTAATGATCCTTCAACAAAC 57.740 29.630 10.49 6.63 34.96 2.93
1823 1986 2.034878 TCTGGGTAGTAGCTGCATCTG 58.965 52.381 4.12 0.00 0.00 2.90
1973 2136 2.082140 ACAGTGTCTGAGGTACCACA 57.918 50.000 15.94 13.70 35.18 4.17
1976 2139 3.368531 GGATCAACAGTGTCTGAGGTACC 60.369 52.174 2.73 2.73 35.18 3.34
2129 2303 9.935682 ATCATCATTAAACGTATTGAACATCAC 57.064 29.630 0.00 0.00 0.00 3.06
2213 2600 4.713824 TGGACACGGTAGAATAGACTTG 57.286 45.455 0.00 0.00 0.00 3.16
2274 2665 4.909305 CACACAATGTTGACGATTTGGTAC 59.091 41.667 0.00 0.00 0.00 3.34
2277 2668 2.725723 GCACACAATGTTGACGATTTGG 59.274 45.455 0.00 0.00 0.00 3.28
2396 2792 6.453092 CCTCTCTTTCTTTGCATTTGTGATT 58.547 36.000 0.00 0.00 0.00 2.57
2501 2897 3.311322 CCTTCACTTTTCTGTACAACGCA 59.689 43.478 0.00 0.00 0.00 5.24
2712 3119 4.566004 TGTAGACCATACACAAAGCTGAC 58.434 43.478 0.00 0.00 0.00 3.51
2717 3124 7.792374 ATTAGCATGTAGACCATACACAAAG 57.208 36.000 0.00 0.00 30.71 2.77
2721 3128 8.888579 AGTTTATTAGCATGTAGACCATACAC 57.111 34.615 0.00 0.00 30.71 2.90
2810 3218 7.226523 ACCAATAAAAACAGAGTGAAAATTGGC 59.773 33.333 9.54 0.00 42.86 4.52
2907 3319 0.459063 GTAGCCTTAACGACACCCGG 60.459 60.000 0.00 0.00 43.93 5.73
2921 3333 0.179108 GAGACGGGATGTGTGTAGCC 60.179 60.000 0.00 0.00 0.00 3.93
2924 3336 1.274167 GTTGGAGACGGGATGTGTGTA 59.726 52.381 0.00 0.00 0.00 2.90
2927 3339 1.677552 GGTTGGAGACGGGATGTGT 59.322 57.895 0.00 0.00 0.00 3.72
3072 4683 0.951558 GTAAGTGCCTTGTGTGGTGG 59.048 55.000 0.00 0.00 0.00 4.61
3124 4736 6.597280 GGTTACTTCATCAATCTTCAAGCTCT 59.403 38.462 0.00 0.00 0.00 4.09
3158 4770 0.460311 ACCTTCCCGTCAATAGCGAG 59.540 55.000 0.00 0.00 0.00 5.03
3192 4804 5.813672 GTGTCTCATTACTGCGGGTTATTAA 59.186 40.000 0.00 0.00 0.00 1.40
3313 4925 5.126869 TGCATATCTTGGTTTTGTATGGGTG 59.873 40.000 0.00 0.00 0.00 4.61
3406 5023 5.835819 TCTGGAGTGGAGGAGTAGAAATATG 59.164 44.000 0.00 0.00 0.00 1.78
3435 5052 3.951680 GCCTTCGATTAAATTTCCCAGGA 59.048 43.478 0.00 0.00 0.00 3.86
3437 5054 4.884164 AGAGCCTTCGATTAAATTTCCCAG 59.116 41.667 0.00 0.00 0.00 4.45
3446 5063 2.698797 CACCCCTAGAGCCTTCGATTAA 59.301 50.000 0.00 0.00 0.00 1.40
3452 5069 2.911928 GGCACCCCTAGAGCCTTC 59.088 66.667 7.84 0.00 44.92 3.46
3477 5094 1.072852 GATCCTGGCCAGAGCATCC 59.927 63.158 34.91 12.42 42.56 3.51
3534 5151 1.665679 GGCACATGTGAATGTAGGTCG 59.334 52.381 29.80 0.00 32.74 4.79
3545 5162 1.867166 TGCAACAATTGGCACATGTG 58.133 45.000 21.83 21.83 39.30 3.21
3553 5170 1.153588 GGGCCGATGCAACAATTGG 60.154 57.895 10.83 0.00 40.13 3.16
3566 5183 2.613977 GGAGACAATGATCTATGGGCCG 60.614 54.545 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.