Multiple sequence alignment - TraesCS7A01G051000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G051000 | chr7A | 100.000 | 5973 | 0 | 0 | 959 | 6931 | 24586444 | 24592416 | 0.000000e+00 | 11031.0 |
1 | TraesCS7A01G051000 | chr7A | 100.000 | 589 | 0 | 0 | 1 | 589 | 24585486 | 24586074 | 0.000000e+00 | 1088.0 |
2 | TraesCS7A01G051000 | chr7D | 95.208 | 5405 | 128 | 38 | 1011 | 6331 | 23490373 | 23495730 | 0.000000e+00 | 8425.0 |
3 | TraesCS7A01G051000 | chr7D | 78.918 | 721 | 92 | 33 | 2110 | 2803 | 58213545 | 58212858 | 1.070000e-117 | 435.0 |
4 | TraesCS7A01G051000 | chr7D | 85.261 | 441 | 36 | 11 | 3 | 420 | 23488738 | 23489172 | 1.790000e-115 | 427.0 |
5 | TraesCS7A01G051000 | chr7D | 89.888 | 267 | 22 | 5 | 6665 | 6930 | 23495916 | 23496178 | 8.610000e-89 | 339.0 |
6 | TraesCS7A01G051000 | chr7D | 97.368 | 38 | 1 | 0 | 260 | 297 | 23488838 | 23488875 | 1.610000e-06 | 65.8 |
7 | TraesCS7A01G051000 | chr4A | 94.036 | 2800 | 116 | 34 | 3763 | 6527 | 708325429 | 708322646 | 0.000000e+00 | 4198.0 |
8 | TraesCS7A01G051000 | chr4A | 93.609 | 266 | 2 | 3 | 6665 | 6930 | 708322525 | 708322275 | 3.920000e-102 | 383.0 |
9 | TraesCS7A01G051000 | chr4A | 83.333 | 312 | 45 | 7 | 5640 | 5947 | 706206057 | 706205749 | 1.470000e-71 | 281.0 |
10 | TraesCS7A01G051000 | chr4A | 81.356 | 118 | 11 | 6 | 6549 | 6666 | 708322663 | 708322557 | 1.240000e-12 | 86.1 |
11 | TraesCS7A01G051000 | chr7B | 88.785 | 321 | 34 | 1 | 1281 | 1599 | 318149436 | 318149756 | 6.520000e-105 | 392.0 |
12 | TraesCS7A01G051000 | chr3B | 88.379 | 327 | 34 | 2 | 1281 | 1603 | 11383086 | 11383412 | 2.340000e-104 | 390.0 |
13 | TraesCS7A01G051000 | chr3B | 84.314 | 204 | 25 | 5 | 2155 | 2353 | 363045766 | 363045565 | 7.090000e-45 | 193.0 |
14 | TraesCS7A01G051000 | chr2B | 88.308 | 325 | 36 | 1 | 1281 | 1603 | 733273017 | 733273341 | 8.430000e-104 | 388.0 |
15 | TraesCS7A01G051000 | chr2B | 87.730 | 326 | 35 | 2 | 1281 | 1604 | 326723662 | 326723984 | 6.560000e-100 | 375.0 |
16 | TraesCS7A01G051000 | chr2B | 78.044 | 542 | 74 | 19 | 2052 | 2562 | 631365396 | 631364869 | 4.060000e-77 | 300.0 |
17 | TraesCS7A01G051000 | chr2B | 79.747 | 395 | 41 | 16 | 2565 | 2947 | 631347066 | 631346699 | 4.150000e-62 | 250.0 |
18 | TraesCS7A01G051000 | chr5B | 88.110 | 328 | 35 | 2 | 1281 | 1604 | 23521252 | 23520925 | 3.030000e-103 | 387.0 |
19 | TraesCS7A01G051000 | chr5B | 84.314 | 204 | 25 | 5 | 2155 | 2353 | 140948812 | 140948611 | 7.090000e-45 | 193.0 |
20 | TraesCS7A01G051000 | chr5D | 87.768 | 327 | 37 | 1 | 1281 | 1604 | 262396914 | 262396588 | 5.070000e-101 | 379.0 |
21 | TraesCS7A01G051000 | chr6B | 87.117 | 326 | 40 | 1 | 1281 | 1604 | 248546198 | 248546523 | 1.100000e-97 | 368.0 |
22 | TraesCS7A01G051000 | chr6B | 79.699 | 266 | 31 | 11 | 6665 | 6930 | 643395311 | 643395069 | 3.320000e-38 | 171.0 |
23 | TraesCS7A01G051000 | chr4B | 86.890 | 328 | 39 | 2 | 1281 | 1604 | 658573528 | 658573855 | 1.420000e-96 | 364.0 |
24 | TraesCS7A01G051000 | chr4B | 95.082 | 61 | 3 | 0 | 2080 | 2140 | 169934820 | 169934880 | 5.720000e-16 | 97.1 |
25 | TraesCS7A01G051000 | chr6D | 85.294 | 204 | 23 | 5 | 2152 | 2350 | 306006148 | 306006349 | 3.280000e-48 | 204.0 |
26 | TraesCS7A01G051000 | chr1B | 85.294 | 204 | 23 | 5 | 2155 | 2353 | 310102325 | 310102124 | 3.280000e-48 | 204.0 |
27 | TraesCS7A01G051000 | chr2A | 88.889 | 162 | 16 | 2 | 2080 | 2241 | 19839434 | 19839593 | 1.520000e-46 | 198.0 |
28 | TraesCS7A01G051000 | chr1A | 95.082 | 61 | 3 | 0 | 2080 | 2140 | 590829390 | 590829450 | 5.720000e-16 | 97.1 |
29 | TraesCS7A01G051000 | chr3A | 93.443 | 61 | 4 | 0 | 2080 | 2140 | 22144517 | 22144577 | 2.660000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G051000 | chr7A | 24585486 | 24592416 | 6930 | False | 6059.5 | 11031 | 100.00000 | 1 | 6931 | 2 | chr7A.!!$F1 | 6930 |
1 | TraesCS7A01G051000 | chr7D | 23488738 | 23496178 | 7440 | False | 2314.2 | 8425 | 91.93125 | 3 | 6930 | 4 | chr7D.!!$F1 | 6927 |
2 | TraesCS7A01G051000 | chr7D | 58212858 | 58213545 | 687 | True | 435.0 | 435 | 78.91800 | 2110 | 2803 | 1 | chr7D.!!$R1 | 693 |
3 | TraesCS7A01G051000 | chr4A | 708322275 | 708325429 | 3154 | True | 1555.7 | 4198 | 89.66700 | 3763 | 6930 | 3 | chr4A.!!$R2 | 3167 |
4 | TraesCS7A01G051000 | chr2B | 631364869 | 631365396 | 527 | True | 300.0 | 300 | 78.04400 | 2052 | 2562 | 1 | chr2B.!!$R2 | 510 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
533 | 1386 | 0.041839 | CACTCGTGCTTGCAGAACAC | 60.042 | 55.000 | 0.00 | 5.92 | 0.00 | 3.32 | F |
572 | 1425 | 0.533085 | GAGGTAGAAGAATGCGGGCC | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 | F |
574 | 1427 | 0.815615 | GGTAGAAGAATGCGGGCCAG | 60.816 | 60.000 | 4.39 | 0.00 | 0.00 | 4.85 | F |
1322 | 2187 | 1.075601 | TTGGGTGAGCTTTCCCTGAT | 58.924 | 50.000 | 22.11 | 0.00 | 43.74 | 2.90 | F |
1449 | 2314 | 1.287425 | GCGGTATGGCTCAGTACAAC | 58.713 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 | F |
2295 | 3185 | 1.963515 | GTTCCTTTGACTGCCAATGGT | 59.036 | 47.619 | 0.00 | 0.00 | 45.38 | 3.55 | F |
3202 | 4134 | 0.175760 | TTGACCGTCATAGCTCTGCC | 59.824 | 55.000 | 1.09 | 0.00 | 0.00 | 4.85 | F |
4311 | 5270 | 0.682292 | TGACATCGCTTGTACCCACA | 59.318 | 50.000 | 0.00 | 0.00 | 39.18 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1449 | 2314 | 0.108585 | AGTACAAGTGCCACACCCAG | 59.891 | 55.000 | 0.00 | 0.00 | 34.49 | 4.45 | R |
2444 | 3347 | 1.475682 | GATTCTGGCCAAGCTTTCCAG | 59.524 | 52.381 | 27.18 | 27.18 | 46.60 | 3.86 | R |
2446 | 3349 | 1.747924 | GAGATTCTGGCCAAGCTTTCC | 59.252 | 52.381 | 7.01 | 1.34 | 0.00 | 3.13 | R |
2447 | 3350 | 2.440409 | TGAGATTCTGGCCAAGCTTTC | 58.560 | 47.619 | 7.01 | 2.96 | 0.00 | 2.62 | R |
2790 | 3704 | 2.584791 | CTCCGGAAACTGAAAATTGCG | 58.415 | 47.619 | 5.23 | 0.00 | 39.64 | 4.85 | R |
3994 | 4953 | 1.735386 | GCAGATGCACAGTCTCACAT | 58.265 | 50.000 | 0.00 | 0.00 | 41.59 | 3.21 | R |
4893 | 5852 | 0.522180 | ACTCGGCACAGAACTACTCG | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 | R |
6120 | 7100 | 0.613260 | AGAAGAATACGTGCCAGGCA | 59.387 | 50.000 | 11.22 | 11.22 | 35.60 | 4.75 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
104 | 105 | 3.535561 | GTCACAGTTGATGAATCCGGAT | 58.464 | 45.455 | 12.38 | 12.38 | 33.11 | 4.18 |
109 | 110 | 5.994054 | CACAGTTGATGAATCCGGATATCTT | 59.006 | 40.000 | 19.48 | 14.61 | 0.00 | 2.40 |
155 | 156 | 1.134699 | GTCGGAGATGGCATGAGTTCA | 60.135 | 52.381 | 3.81 | 0.00 | 40.67 | 3.18 |
240 | 241 | 4.449081 | GGGGATGGGGATGAATTTATGTGA | 60.449 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
260 | 261 | 1.692749 | GGAGGGTGGGCCATAGTGA | 60.693 | 63.158 | 10.70 | 0.00 | 36.17 | 3.41 |
261 | 262 | 1.527370 | GAGGGTGGGCCATAGTGAC | 59.473 | 63.158 | 10.70 | 0.00 | 36.17 | 3.67 |
262 | 263 | 1.229820 | AGGGTGGGCCATAGTGACA | 60.230 | 57.895 | 10.70 | 0.00 | 36.17 | 3.58 |
263 | 264 | 0.624500 | AGGGTGGGCCATAGTGACAT | 60.625 | 55.000 | 10.70 | 0.00 | 36.17 | 3.06 |
264 | 265 | 0.179018 | GGGTGGGCCATAGTGACATC | 60.179 | 60.000 | 10.70 | 0.00 | 36.17 | 3.06 |
265 | 266 | 0.839946 | GGTGGGCCATAGTGACATCT | 59.160 | 55.000 | 10.70 | 0.00 | 34.09 | 2.90 |
266 | 267 | 1.202698 | GGTGGGCCATAGTGACATCTC | 60.203 | 57.143 | 10.70 | 0.00 | 34.09 | 2.75 |
267 | 268 | 0.752658 | TGGGCCATAGTGACATCTCG | 59.247 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
268 | 269 | 1.040646 | GGGCCATAGTGACATCTCGA | 58.959 | 55.000 | 4.39 | 0.00 | 0.00 | 4.04 |
269 | 270 | 1.412710 | GGGCCATAGTGACATCTCGAA | 59.587 | 52.381 | 4.39 | 0.00 | 0.00 | 3.71 |
270 | 271 | 2.546795 | GGGCCATAGTGACATCTCGAAG | 60.547 | 54.545 | 4.39 | 0.00 | 0.00 | 3.79 |
271 | 272 | 2.101582 | GGCCATAGTGACATCTCGAAGT | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
272 | 273 | 3.376540 | GCCATAGTGACATCTCGAAGTC | 58.623 | 50.000 | 5.61 | 5.61 | 35.37 | 3.01 |
273 | 274 | 3.181486 | GCCATAGTGACATCTCGAAGTCA | 60.181 | 47.826 | 10.02 | 10.02 | 42.06 | 3.41 |
275 | 276 | 4.336713 | CCATAGTGACATCTCGAAGTCAGA | 59.663 | 45.833 | 13.36 | 7.10 | 44.62 | 3.27 |
276 | 277 | 5.009510 | CCATAGTGACATCTCGAAGTCAGAT | 59.990 | 44.000 | 13.36 | 8.65 | 44.62 | 2.90 |
277 | 278 | 6.460814 | CCATAGTGACATCTCGAAGTCAGATT | 60.461 | 42.308 | 13.36 | 7.02 | 44.62 | 2.40 |
278 | 279 | 4.992688 | AGTGACATCTCGAAGTCAGATTC | 58.007 | 43.478 | 13.36 | 4.62 | 44.62 | 2.52 |
279 | 280 | 4.109050 | GTGACATCTCGAAGTCAGATTCC | 58.891 | 47.826 | 13.36 | 1.36 | 44.62 | 3.01 |
280 | 281 | 3.181496 | TGACATCTCGAAGTCAGATTCCG | 60.181 | 47.826 | 10.02 | 0.00 | 39.65 | 4.30 |
281 | 282 | 2.123342 | CATCTCGAAGTCAGATTCCGC | 58.877 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
282 | 283 | 1.464734 | TCTCGAAGTCAGATTCCGCT | 58.535 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
287 | 288 | 2.266554 | GAAGTCAGATTCCGCTGTCTG | 58.733 | 52.381 | 0.00 | 0.00 | 42.46 | 3.51 |
289 | 290 | 1.203523 | AGTCAGATTCCGCTGTCTGTC | 59.796 | 52.381 | 8.40 | 4.49 | 41.92 | 3.51 |
290 | 291 | 1.067565 | GTCAGATTCCGCTGTCTGTCA | 60.068 | 52.381 | 8.40 | 0.00 | 41.92 | 3.58 |
291 | 292 | 1.827344 | TCAGATTCCGCTGTCTGTCAT | 59.173 | 47.619 | 8.40 | 0.00 | 41.92 | 3.06 |
295 | 319 | 0.388520 | TTCCGCTGTCTGTCATGTCG | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
297 | 321 | 1.080501 | CGCTGTCTGTCATGTCGGT | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
299 | 323 | 0.244994 | GCTGTCTGTCATGTCGGTCT | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
313 | 337 | 0.594602 | CGGTCTGAACGTGTGGACTA | 59.405 | 55.000 | 7.00 | 0.00 | 0.00 | 2.59 |
315 | 339 | 1.612463 | GGTCTGAACGTGTGGACTACT | 59.388 | 52.381 | 12.47 | 0.00 | 0.00 | 2.57 |
371 | 395 | 2.231380 | AATGACTGGGGAGGCCGTT | 61.231 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
372 | 396 | 2.484287 | AATGACTGGGGAGGCCGTTG | 62.484 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
373 | 397 | 3.637273 | GACTGGGGAGGCCGTTGT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
384 | 408 | 4.966787 | CCGTTGTGGGGTGGGGTG | 62.967 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
385 | 409 | 4.966787 | CGTTGTGGGGTGGGGTGG | 62.967 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
386 | 410 | 4.614036 | GTTGTGGGGTGGGGTGGG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
463 | 1316 | 5.774498 | AAAAGAAAAAGAGACCGAAGCAT | 57.226 | 34.783 | 0.00 | 0.00 | 0.00 | 3.79 |
464 | 1317 | 5.363979 | AAAGAAAAAGAGACCGAAGCATC | 57.636 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
465 | 1318 | 3.339141 | AGAAAAAGAGACCGAAGCATCC | 58.661 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
466 | 1319 | 2.859165 | AAAAGAGACCGAAGCATCCA | 57.141 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
467 | 1320 | 2.100605 | AAAGAGACCGAAGCATCCAC | 57.899 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
468 | 1321 | 0.250513 | AAGAGACCGAAGCATCCACC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
469 | 1322 | 0.904865 | AGAGACCGAAGCATCCACCA | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
470 | 1323 | 0.179000 | GAGACCGAAGCATCCACCAT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
471 | 1324 | 0.620556 | AGACCGAAGCATCCACCATT | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
472 | 1325 | 1.004745 | AGACCGAAGCATCCACCATTT | 59.995 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
473 | 1326 | 1.401905 | GACCGAAGCATCCACCATTTC | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
474 | 1327 | 0.378257 | CCGAAGCATCCACCATTTCG | 59.622 | 55.000 | 0.00 | 0.00 | 40.03 | 3.46 |
475 | 1328 | 0.378257 | CGAAGCATCCACCATTTCGG | 59.622 | 55.000 | 0.00 | 0.00 | 37.55 | 4.30 |
476 | 1329 | 0.740737 | GAAGCATCCACCATTTCGGG | 59.259 | 55.000 | 0.00 | 0.00 | 40.22 | 5.14 |
477 | 1330 | 1.322538 | AAGCATCCACCATTTCGGGC | 61.323 | 55.000 | 0.00 | 0.00 | 40.22 | 6.13 |
478 | 1331 | 1.754234 | GCATCCACCATTTCGGGCT | 60.754 | 57.895 | 0.00 | 0.00 | 40.22 | 5.19 |
479 | 1332 | 0.465460 | GCATCCACCATTTCGGGCTA | 60.465 | 55.000 | 0.00 | 0.00 | 40.22 | 3.93 |
480 | 1333 | 1.308998 | CATCCACCATTTCGGGCTAC | 58.691 | 55.000 | 0.00 | 0.00 | 40.22 | 3.58 |
481 | 1334 | 0.916086 | ATCCACCATTTCGGGCTACA | 59.084 | 50.000 | 0.00 | 0.00 | 40.22 | 2.74 |
482 | 1335 | 0.693622 | TCCACCATTTCGGGCTACAA | 59.306 | 50.000 | 0.00 | 0.00 | 40.22 | 2.41 |
483 | 1336 | 1.074084 | TCCACCATTTCGGGCTACAAA | 59.926 | 47.619 | 0.00 | 0.00 | 40.22 | 2.83 |
484 | 1337 | 1.201414 | CCACCATTTCGGGCTACAAAC | 59.799 | 52.381 | 0.00 | 0.00 | 40.22 | 2.93 |
485 | 1338 | 1.135803 | CACCATTTCGGGCTACAAACG | 60.136 | 52.381 | 0.00 | 0.00 | 40.22 | 3.60 |
486 | 1339 | 0.179174 | CCATTTCGGGCTACAAACGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.84 |
487 | 1340 | 0.179174 | CATTTCGGGCTACAAACGCC | 60.179 | 55.000 | 0.00 | 0.00 | 46.83 | 5.68 |
488 | 1341 | 0.322187 | ATTTCGGGCTACAAACGCCT | 60.322 | 50.000 | 0.71 | 0.00 | 46.73 | 5.52 |
489 | 1342 | 0.952010 | TTTCGGGCTACAAACGCCTC | 60.952 | 55.000 | 0.71 | 0.00 | 46.73 | 4.70 |
490 | 1343 | 3.186047 | CGGGCTACAAACGCCTCG | 61.186 | 66.667 | 0.71 | 0.00 | 46.73 | 4.63 |
491 | 1344 | 2.818274 | GGGCTACAAACGCCTCGG | 60.818 | 66.667 | 0.71 | 0.00 | 46.73 | 4.63 |
492 | 1345 | 3.497031 | GGCTACAAACGCCTCGGC | 61.497 | 66.667 | 0.00 | 0.00 | 44.17 | 5.54 |
493 | 1346 | 2.740826 | GCTACAAACGCCTCGGCA | 60.741 | 61.111 | 8.87 | 0.00 | 42.06 | 5.69 |
494 | 1347 | 2.106683 | GCTACAAACGCCTCGGCAT | 61.107 | 57.895 | 8.87 | 0.00 | 42.06 | 4.40 |
495 | 1348 | 1.715585 | CTACAAACGCCTCGGCATG | 59.284 | 57.895 | 8.87 | 6.32 | 42.06 | 4.06 |
496 | 1349 | 1.705337 | CTACAAACGCCTCGGCATGG | 61.705 | 60.000 | 8.87 | 0.00 | 42.06 | 3.66 |
497 | 1350 | 3.814268 | CAAACGCCTCGGCATGGG | 61.814 | 66.667 | 8.87 | 0.00 | 42.06 | 4.00 |
508 | 1361 | 4.511246 | GCATGGGCCAGCCAGCTA | 62.511 | 66.667 | 13.78 | 0.00 | 37.98 | 3.32 |
509 | 1362 | 2.519441 | CATGGGCCAGCCAGCTAT | 59.481 | 61.111 | 13.78 | 0.00 | 37.98 | 2.97 |
510 | 1363 | 1.602888 | CATGGGCCAGCCAGCTATC | 60.603 | 63.158 | 13.78 | 0.00 | 37.98 | 2.08 |
511 | 1364 | 2.838467 | ATGGGCCAGCCAGCTATCC | 61.838 | 63.158 | 13.78 | 0.00 | 37.98 | 2.59 |
512 | 1365 | 4.277009 | GGGCCAGCCAGCTATCCC | 62.277 | 72.222 | 11.50 | 11.27 | 37.98 | 3.85 |
513 | 1366 | 4.277009 | GGCCAGCCAGCTATCCCC | 62.277 | 72.222 | 3.12 | 0.00 | 35.81 | 4.81 |
514 | 1367 | 4.277009 | GCCAGCCAGCTATCCCCC | 62.277 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
515 | 1368 | 2.773918 | CCAGCCAGCTATCCCCCA | 60.774 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
516 | 1369 | 2.512896 | CAGCCAGCTATCCCCCAC | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
517 | 1370 | 2.074948 | CAGCCAGCTATCCCCCACT | 61.075 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
518 | 1371 | 1.768077 | AGCCAGCTATCCCCCACTC | 60.768 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
519 | 1372 | 3.142393 | CCAGCTATCCCCCACTCG | 58.858 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
520 | 1373 | 1.762460 | CCAGCTATCCCCCACTCGT | 60.762 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
521 | 1374 | 1.443407 | CAGCTATCCCCCACTCGTG | 59.557 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
522 | 1375 | 2.109181 | GCTATCCCCCACTCGTGC | 59.891 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
523 | 1376 | 2.435693 | GCTATCCCCCACTCGTGCT | 61.436 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
524 | 1377 | 1.972660 | GCTATCCCCCACTCGTGCTT | 61.973 | 60.000 | 0.00 | 0.00 | 0.00 | 3.91 |
525 | 1378 | 0.179073 | CTATCCCCCACTCGTGCTTG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
526 | 1379 | 2.252072 | TATCCCCCACTCGTGCTTGC | 62.252 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
527 | 1380 | 4.641645 | CCCCCACTCGTGCTTGCA | 62.642 | 66.667 | 0.00 | 0.00 | 0.00 | 4.08 |
528 | 1381 | 3.052082 | CCCCACTCGTGCTTGCAG | 61.052 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
529 | 1382 | 2.031012 | CCCACTCGTGCTTGCAGA | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
530 | 1383 | 1.597854 | CCCACTCGTGCTTGCAGAA | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
531 | 1384 | 1.571460 | CCACTCGTGCTTGCAGAAC | 59.429 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
532 | 1385 | 1.159713 | CCACTCGTGCTTGCAGAACA | 61.160 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
533 | 1386 | 0.041839 | CACTCGTGCTTGCAGAACAC | 60.042 | 55.000 | 0.00 | 5.92 | 0.00 | 3.32 |
536 | 1389 | 2.050985 | GTGCTTGCAGAACACGGC | 60.051 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
537 | 1390 | 2.515757 | TGCTTGCAGAACACGGCA | 60.516 | 55.556 | 0.00 | 0.00 | 38.46 | 5.69 |
538 | 1391 | 2.253452 | GCTTGCAGAACACGGCAG | 59.747 | 61.111 | 0.00 | 0.00 | 41.68 | 4.85 |
539 | 1392 | 2.949106 | CTTGCAGAACACGGCAGG | 59.051 | 61.111 | 0.00 | 0.00 | 41.68 | 4.85 |
540 | 1393 | 3.259425 | CTTGCAGAACACGGCAGGC | 62.259 | 63.158 | 0.00 | 0.00 | 41.68 | 4.85 |
543 | 1396 | 4.641645 | CAGAACACGGCAGGCCCA | 62.642 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
544 | 1397 | 3.884774 | AGAACACGGCAGGCCCAA | 61.885 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
545 | 1398 | 3.670377 | GAACACGGCAGGCCCAAC | 61.670 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
568 | 1421 | 2.208074 | CGCGAGGTAGAAGAATGCG | 58.792 | 57.895 | 0.00 | 0.00 | 38.04 | 4.73 |
569 | 1422 | 1.209275 | CGCGAGGTAGAAGAATGCGG | 61.209 | 60.000 | 0.00 | 0.00 | 40.36 | 5.69 |
570 | 1423 | 0.876342 | GCGAGGTAGAAGAATGCGGG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
571 | 1424 | 0.876342 | CGAGGTAGAAGAATGCGGGC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
572 | 1425 | 0.533085 | GAGGTAGAAGAATGCGGGCC | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
573 | 1426 | 1.223487 | GGTAGAAGAATGCGGGCCA | 59.777 | 57.895 | 4.39 | 0.00 | 0.00 | 5.36 |
574 | 1427 | 0.815615 | GGTAGAAGAATGCGGGCCAG | 60.816 | 60.000 | 4.39 | 0.00 | 0.00 | 4.85 |
575 | 1428 | 1.153168 | TAGAAGAATGCGGGCCAGC | 60.153 | 57.895 | 22.10 | 22.10 | 37.71 | 4.85 |
576 | 1429 | 2.923426 | TAGAAGAATGCGGGCCAGCG | 62.923 | 60.000 | 23.18 | 10.38 | 40.67 | 5.18 |
577 | 1430 | 4.408821 | AAGAATGCGGGCCAGCGA | 62.409 | 61.111 | 23.18 | 12.53 | 40.67 | 4.93 |
578 | 1431 | 3.918253 | AAGAATGCGGGCCAGCGAA | 62.918 | 57.895 | 23.18 | 6.89 | 40.67 | 4.70 |
579 | 1432 | 3.880846 | GAATGCGGGCCAGCGAAG | 61.881 | 66.667 | 23.18 | 0.00 | 40.67 | 3.79 |
1002 | 1855 | 4.838152 | CTCGCCCCCACGACCATG | 62.838 | 72.222 | 0.00 | 0.00 | 37.09 | 3.66 |
1322 | 2187 | 1.075601 | TTGGGTGAGCTTTCCCTGAT | 58.924 | 50.000 | 22.11 | 0.00 | 43.74 | 2.90 |
1449 | 2314 | 1.287425 | GCGGTATGGCTCAGTACAAC | 58.713 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1475 | 2340 | 3.435671 | GTGTGGCACTTGTACTGTAATCC | 59.564 | 47.826 | 19.83 | 0.00 | 0.00 | 3.01 |
1585 | 2450 | 3.803368 | GCTAAATGTGGTGGCAAAAGCTT | 60.803 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
1672 | 2537 | 6.065976 | TCAGATCACCATTCACCTGTTATT | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1801 | 2666 | 6.721318 | TGGACTCTTTAAGCATACAGGATTT | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1878 | 2743 | 7.672239 | TCCTTGGTGCCTAATTACAAAGTAATT | 59.328 | 33.333 | 16.52 | 16.52 | 0.00 | 1.40 |
2116 | 3001 | 6.360370 | TCAGAAAGCTTATGAGGTACTTGT | 57.640 | 37.500 | 0.00 | 0.00 | 41.55 | 3.16 |
2148 | 3033 | 2.733227 | GCGTGGATGCTCAATTTCAAGG | 60.733 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2295 | 3185 | 1.963515 | GTTCCTTTGACTGCCAATGGT | 59.036 | 47.619 | 0.00 | 0.00 | 45.38 | 3.55 |
2409 | 3303 | 4.865776 | TGTTTGCCTACACTATTTGCAAC | 58.134 | 39.130 | 0.00 | 0.00 | 41.21 | 4.17 |
2410 | 3304 | 4.339530 | TGTTTGCCTACACTATTTGCAACA | 59.660 | 37.500 | 0.00 | 0.00 | 41.21 | 3.33 |
2419 | 3313 | 6.389830 | ACACTATTTGCAACAGTCATCAAA | 57.610 | 33.333 | 9.43 | 0.00 | 33.64 | 2.69 |
2447 | 3350 | 9.554395 | AATTAAAACACCAACCTTTTATTCTGG | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
2499 | 3402 | 8.408601 | ACATGGAATCTACATTGATAACTTTGC | 58.591 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2709 | 3620 | 4.252878 | CAGTTTGGTGGTTTTGCTTCTTT | 58.747 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2770 | 3684 | 5.582550 | TGACTCAGCAGAAATAGTATCGTG | 58.417 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2780 | 3694 | 7.011482 | GCAGAAATAGTATCGTGTGGAAAATCT | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2790 | 3704 | 6.668323 | TCGTGTGGAAAATCTTTTCATCTTC | 58.332 | 36.000 | 15.24 | 1.21 | 46.34 | 2.87 |
2806 | 3720 | 5.460646 | TCATCTTCGCAATTTTCAGTTTCC | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
2937 | 3851 | 4.080863 | ACCCTCTTATGTCACAGATGGTTC | 60.081 | 45.833 | 5.45 | 0.00 | 35.21 | 3.62 |
2938 | 3852 | 4.446371 | CCTCTTATGTCACAGATGGTTCC | 58.554 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
2939 | 3853 | 4.163078 | CCTCTTATGTCACAGATGGTTCCT | 59.837 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
2940 | 3854 | 5.344743 | TCTTATGTCACAGATGGTTCCTC | 57.655 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2941 | 3855 | 5.026121 | TCTTATGTCACAGATGGTTCCTCT | 58.974 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2942 | 3856 | 3.902881 | ATGTCACAGATGGTTCCTCTC | 57.097 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
2943 | 3857 | 2.894731 | TGTCACAGATGGTTCCTCTCT | 58.105 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
2944 | 3858 | 2.828520 | TGTCACAGATGGTTCCTCTCTC | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2945 | 3859 | 3.096092 | GTCACAGATGGTTCCTCTCTCT | 58.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2946 | 3860 | 3.130340 | GTCACAGATGGTTCCTCTCTCTC | 59.870 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
3090 | 4022 | 7.908827 | AGCATATTTAATCTGATCTCTGCTG | 57.091 | 36.000 | 0.00 | 0.00 | 35.13 | 4.41 |
3202 | 4134 | 0.175760 | TTGACCGTCATAGCTCTGCC | 59.824 | 55.000 | 1.09 | 0.00 | 0.00 | 4.85 |
3334 | 4266 | 4.116961 | TGCGAAACCTGCAGTATGTATAC | 58.883 | 43.478 | 13.81 | 0.00 | 39.31 | 1.47 |
3350 | 4282 | 8.131100 | AGTATGTATACGCACGTGTATTTTACT | 58.869 | 33.333 | 18.38 | 11.00 | 38.28 | 2.24 |
3398 | 4330 | 7.955864 | GGTAACTAAATGTCGTCTTTGAATCAC | 59.044 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
3508 | 4440 | 4.101119 | AGGGGTTCTGGATATGTTAGTTCG | 59.899 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
3512 | 4444 | 5.163437 | GGTTCTGGATATGTTAGTTCGTCCT | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3519 | 4451 | 1.899814 | TGTTAGTTCGTCCTCCAGCAT | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
3679 | 4617 | 6.341316 | GCAAGACTGTAAAGGTGAGATATCA | 58.659 | 40.000 | 5.32 | 0.00 | 0.00 | 2.15 |
3721 | 4679 | 3.127548 | AGCTTTCCGATGTAGCACATTTG | 59.872 | 43.478 | 0.00 | 1.27 | 39.27 | 2.32 |
3734 | 4692 | 1.888512 | CACATTTGCTGTACCAAGCCT | 59.111 | 47.619 | 2.98 | 0.00 | 42.83 | 4.58 |
3740 | 4698 | 1.075374 | TGCTGTACCAAGCCTCCAATT | 59.925 | 47.619 | 2.98 | 0.00 | 42.83 | 2.32 |
3748 | 4706 | 6.667414 | TGTACCAAGCCTCCAATTAATCATTT | 59.333 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
3964 | 4923 | 9.646336 | GTGTACTTTTTAGTGTGTACTGATTTG | 57.354 | 33.333 | 0.00 | 0.00 | 37.78 | 2.32 |
3994 | 4953 | 6.620877 | ACCAGGTGACTAGAATAAATGTCA | 57.379 | 37.500 | 0.00 | 0.00 | 40.21 | 3.58 |
4038 | 4997 | 9.277783 | GCATCTTCCTATCATACATTACTGTTT | 57.722 | 33.333 | 0.00 | 0.00 | 36.79 | 2.83 |
4070 | 5029 | 8.408601 | GTGAATGTTGCTTCCTATCATACATTT | 58.591 | 33.333 | 0.00 | 0.00 | 35.55 | 2.32 |
4311 | 5270 | 0.682292 | TGACATCGCTTGTACCCACA | 59.318 | 50.000 | 0.00 | 0.00 | 39.18 | 4.17 |
4478 | 5437 | 1.951602 | TCAGTCGTCTTCTCGTTTGGA | 59.048 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
4490 | 5449 | 5.418310 | TCTCGTTTGGAATTTCTGTTGTC | 57.582 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
4693 | 5652 | 6.238842 | GGGACAGTTAAAGGAAAGTGGTAAAC | 60.239 | 42.308 | 0.00 | 0.00 | 34.66 | 2.01 |
4718 | 5677 | 3.518992 | TCCCCCTTCTTCGAAATTGTT | 57.481 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
4836 | 5795 | 4.459852 | AATGCTATTAGCTTCCCCATGT | 57.540 | 40.909 | 16.29 | 0.00 | 42.97 | 3.21 |
5204 | 6170 | 6.248433 | TCTGAGAGGAAAAGGTAAATTGCAT | 58.752 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
5273 | 6239 | 9.635520 | GCATATACGGTGACATAGTTTATAGTT | 57.364 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
5458 | 6424 | 4.381411 | AGAGACAAAGTTTGTAGCACCTC | 58.619 | 43.478 | 20.90 | 19.99 | 45.52 | 3.85 |
5539 | 6505 | 6.389906 | AGAAAATGCCAGGATTCGTTTTTAG | 58.610 | 36.000 | 0.00 | 0.00 | 33.17 | 1.85 |
5606 | 6572 | 9.701098 | ATGATTTATGTATGGCATCACATTTTC | 57.299 | 29.630 | 20.07 | 15.88 | 38.94 | 2.29 |
5607 | 6573 | 8.693625 | TGATTTATGTATGGCATCACATTTTCA | 58.306 | 29.630 | 20.07 | 17.31 | 38.94 | 2.69 |
5608 | 6574 | 9.188588 | GATTTATGTATGGCATCACATTTTCAG | 57.811 | 33.333 | 20.07 | 0.00 | 38.94 | 3.02 |
5609 | 6575 | 7.878547 | TTATGTATGGCATCACATTTTCAGA | 57.121 | 32.000 | 20.07 | 6.13 | 38.94 | 3.27 |
5651 | 6627 | 6.071391 | AGGAAAACGGAATAACTGATGCATTT | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
5699 | 6677 | 3.840831 | TCCTGCAGGAATCAAGACG | 57.159 | 52.632 | 33.41 | 2.70 | 42.18 | 4.18 |
5912 | 6890 | 0.251341 | ACAAGGATGCGGAAAAGGCT | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5918 | 6896 | 2.985847 | GCGGAAAAGGCTGCTGGT | 60.986 | 61.111 | 0.00 | 0.00 | 37.20 | 4.00 |
6120 | 7100 | 3.555966 | GGAAATAATGCTACACCCTGCT | 58.444 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
6234 | 7224 | 2.108976 | CACACGGTGCCACTGTCT | 59.891 | 61.111 | 6.28 | 0.00 | 35.04 | 3.41 |
6252 | 7242 | 3.056179 | TGTCTTATTCATGTCGCTGGTCA | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
6258 | 7248 | 1.827344 | TCATGTCGCTGGTCAGAAGAT | 59.173 | 47.619 | 1.65 | 0.00 | 0.00 | 2.40 |
6263 | 7253 | 2.808543 | GTCGCTGGTCAGAAGATTTTGT | 59.191 | 45.455 | 1.65 | 0.00 | 0.00 | 2.83 |
6270 | 7260 | 4.523943 | TGGTCAGAAGATTTTGTCATTGGG | 59.476 | 41.667 | 0.00 | 0.00 | 0.00 | 4.12 |
6290 | 7280 | 3.507622 | GGGAACAATTTTGCTAGCTCTGT | 59.492 | 43.478 | 17.23 | 8.82 | 0.00 | 3.41 |
6296 | 7286 | 5.979517 | ACAATTTTGCTAGCTCTGTTTTCAC | 59.020 | 36.000 | 17.23 | 0.00 | 0.00 | 3.18 |
6299 | 7289 | 3.475566 | TGCTAGCTCTGTTTTCACTGT | 57.524 | 42.857 | 17.23 | 0.00 | 0.00 | 3.55 |
6312 | 7302 | 8.141268 | TCTGTTTTCACTGTTTTTGAGAGTTTT | 58.859 | 29.630 | 0.00 | 0.00 | 27.48 | 2.43 |
6320 | 7310 | 9.023967 | CACTGTTTTTGAGAGTTTTGATTTAGG | 57.976 | 33.333 | 0.00 | 0.00 | 27.48 | 2.69 |
6321 | 7311 | 8.966868 | ACTGTTTTTGAGAGTTTTGATTTAGGA | 58.033 | 29.630 | 0.00 | 0.00 | 0.00 | 2.94 |
6322 | 7312 | 9.237846 | CTGTTTTTGAGAGTTTTGATTTAGGAC | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
6323 | 7313 | 8.744652 | TGTTTTTGAGAGTTTTGATTTAGGACA | 58.255 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
6324 | 7314 | 9.237846 | GTTTTTGAGAGTTTTGATTTAGGACAG | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
6326 | 7316 | 7.496529 | TTGAGAGTTTTGATTTAGGACAGTG | 57.503 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
6337 | 7327 | 2.564721 | GGACAGTGTTTGCTGGGCC | 61.565 | 63.158 | 0.00 | 0.00 | 40.59 | 5.80 |
6408 | 7398 | 6.491403 | ACTTGCTTGGTCTTCTGTAAAATCAT | 59.509 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
6410 | 7400 | 7.288810 | TGCTTGGTCTTCTGTAAAATCATTT | 57.711 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
6412 | 7402 | 8.203485 | TGCTTGGTCTTCTGTAAAATCATTTTT | 58.797 | 29.630 | 0.00 | 0.00 | 38.56 | 1.94 |
6436 | 7426 | 4.222366 | TGTTGGCTGCATTTTCATGGATAA | 59.778 | 37.500 | 0.50 | 0.00 | 28.97 | 1.75 |
6437 | 7427 | 4.659111 | TGGCTGCATTTTCATGGATAAG | 57.341 | 40.909 | 0.50 | 0.00 | 28.97 | 1.73 |
6445 | 7456 | 7.430441 | TGCATTTTCATGGATAAGATGTCATG | 58.570 | 34.615 | 0.00 | 0.00 | 38.54 | 3.07 |
6477 | 7488 | 4.670896 | AGTTTTGCCAATTTGCAGTAGT | 57.329 | 36.364 | 4.22 | 0.00 | 43.21 | 2.73 |
6480 | 7491 | 6.758254 | AGTTTTGCCAATTTGCAGTAGTAAT | 58.242 | 32.000 | 4.22 | 0.00 | 43.21 | 1.89 |
6491 | 7502 | 5.371115 | TGCAGTAGTAATTGTGCCTTTTC | 57.629 | 39.130 | 0.00 | 0.00 | 34.91 | 2.29 |
6497 | 7508 | 9.507280 | CAGTAGTAATTGTGCCTTTTCATATTG | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
6518 | 7529 | 4.490743 | TGCAATTGAGCAATGTTGAGATG | 58.509 | 39.130 | 10.34 | 0.00 | 42.46 | 2.90 |
6519 | 7530 | 4.218852 | TGCAATTGAGCAATGTTGAGATGA | 59.781 | 37.500 | 10.34 | 0.00 | 42.46 | 2.92 |
6520 | 7531 | 4.798907 | GCAATTGAGCAATGTTGAGATGAG | 59.201 | 41.667 | 10.34 | 0.00 | 0.00 | 2.90 |
6521 | 7532 | 4.634184 | ATTGAGCAATGTTGAGATGAGC | 57.366 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
6522 | 7533 | 3.062122 | TGAGCAATGTTGAGATGAGCA | 57.938 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
6523 | 7534 | 3.414269 | TGAGCAATGTTGAGATGAGCAA | 58.586 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
6524 | 7535 | 3.189910 | TGAGCAATGTTGAGATGAGCAAC | 59.810 | 43.478 | 0.00 | 0.00 | 44.40 | 4.17 |
6533 | 7544 | 5.522456 | GTTGAGATGAGCAACATTGTTTCA | 58.478 | 37.500 | 0.00 | 2.91 | 43.77 | 2.69 |
6534 | 7545 | 5.771153 | TGAGATGAGCAACATTGTTTCAA | 57.229 | 34.783 | 7.74 | 0.00 | 39.56 | 2.69 |
6535 | 7546 | 6.146601 | TGAGATGAGCAACATTGTTTCAAA | 57.853 | 33.333 | 7.74 | 0.00 | 39.56 | 2.69 |
6536 | 7547 | 6.571605 | TGAGATGAGCAACATTGTTTCAAAA | 58.428 | 32.000 | 7.74 | 0.00 | 39.56 | 2.44 |
6537 | 7548 | 7.040494 | TGAGATGAGCAACATTGTTTCAAAAA | 58.960 | 30.769 | 7.74 | 0.00 | 39.56 | 1.94 |
6538 | 7549 | 7.711772 | TGAGATGAGCAACATTGTTTCAAAAAT | 59.288 | 29.630 | 7.74 | 0.00 | 39.56 | 1.82 |
6539 | 7550 | 9.195411 | GAGATGAGCAACATTGTTTCAAAAATA | 57.805 | 29.630 | 7.74 | 0.00 | 39.56 | 1.40 |
6540 | 7551 | 9.545105 | AGATGAGCAACATTGTTTCAAAAATAA | 57.455 | 25.926 | 7.74 | 0.00 | 39.56 | 1.40 |
6578 | 7589 | 0.675633 | GCAACATGAACAGGCCTTGT | 59.324 | 50.000 | 0.00 | 0.48 | 43.45 | 3.16 |
6589 | 7600 | 0.314935 | AGGCCTTGTTGTTGCAATCG | 59.685 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
6602 | 7613 | 1.135431 | TGCAATCGTTGTAATGGCTGC | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 5.25 |
6609 | 7620 | 2.419673 | CGTTGTAATGGCTGCATTCTCA | 59.580 | 45.455 | 0.50 | 0.00 | 0.00 | 3.27 |
6618 | 7629 | 5.245584 | TGGCTGCATTCTCATGGATATTA | 57.754 | 39.130 | 0.50 | 0.00 | 28.97 | 0.98 |
6627 | 7638 | 7.415318 | GCATTCTCATGGATATTAATGCTCCTG | 60.415 | 40.741 | 15.85 | 12.38 | 43.53 | 3.86 |
6632 | 7643 | 4.645535 | TGGATATTAATGCTCCTGACTGC | 58.354 | 43.478 | 15.85 | 0.00 | 0.00 | 4.40 |
6634 | 7645 | 4.453819 | GGATATTAATGCTCCTGACTGCAC | 59.546 | 45.833 | 10.25 | 0.00 | 42.26 | 4.57 |
6635 | 7646 | 3.641434 | ATTAATGCTCCTGACTGCACT | 57.359 | 42.857 | 0.00 | 0.00 | 42.26 | 4.40 |
6652 | 7663 | 3.812609 | TGCACTTTCTTGTAATTCAGCGA | 59.187 | 39.130 | 0.00 | 0.00 | 0.00 | 4.93 |
6766 | 7824 | 7.764443 | TCTCCTCCTTGTACGAGAATAATTTTG | 59.236 | 37.037 | 12.02 | 0.00 | 0.00 | 2.44 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 2.750888 | GGAGATGACGGTTTGCGCC | 61.751 | 63.158 | 4.18 | 0.00 | 0.00 | 6.53 |
47 | 48 | 1.827969 | CTTGAGGAGGAGATGACGGTT | 59.172 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
104 | 105 | 4.160439 | ACAGCGGAATCTGACTTCAAGATA | 59.840 | 41.667 | 0.00 | 0.00 | 37.51 | 1.98 |
109 | 110 | 1.895798 | AGACAGCGGAATCTGACTTCA | 59.104 | 47.619 | 0.00 | 0.00 | 36.06 | 3.02 |
147 | 148 | 3.679389 | AGCTTTTCACCGATGAACTCAT | 58.321 | 40.909 | 0.00 | 0.00 | 44.66 | 2.90 |
148 | 149 | 3.126001 | AGCTTTTCACCGATGAACTCA | 57.874 | 42.857 | 0.00 | 0.00 | 44.66 | 3.41 |
155 | 156 | 0.546598 | CCCCCTAGCTTTTCACCGAT | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
240 | 241 | 2.039405 | CTATGGCCCACCCTCCCT | 60.039 | 66.667 | 0.00 | 0.00 | 33.59 | 4.20 |
260 | 261 | 2.480416 | GCGGAATCTGACTTCGAGATGT | 60.480 | 50.000 | 0.00 | 0.00 | 30.30 | 3.06 |
261 | 262 | 2.123342 | GCGGAATCTGACTTCGAGATG | 58.877 | 52.381 | 0.00 | 0.00 | 30.30 | 2.90 |
262 | 263 | 2.028130 | AGCGGAATCTGACTTCGAGAT | 58.972 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
263 | 264 | 1.133216 | CAGCGGAATCTGACTTCGAGA | 59.867 | 52.381 | 0.00 | 0.00 | 36.19 | 4.04 |
264 | 265 | 1.135257 | ACAGCGGAATCTGACTTCGAG | 60.135 | 52.381 | 0.00 | 0.00 | 37.51 | 4.04 |
265 | 266 | 0.888619 | ACAGCGGAATCTGACTTCGA | 59.111 | 50.000 | 0.00 | 0.00 | 37.51 | 3.71 |
266 | 267 | 1.135257 | AGACAGCGGAATCTGACTTCG | 60.135 | 52.381 | 0.00 | 0.00 | 36.06 | 3.79 |
267 | 268 | 2.266554 | CAGACAGCGGAATCTGACTTC | 58.733 | 52.381 | 0.00 | 0.00 | 44.32 | 3.01 |
268 | 269 | 1.620819 | ACAGACAGCGGAATCTGACTT | 59.379 | 47.619 | 10.66 | 0.00 | 44.32 | 3.01 |
269 | 270 | 1.203523 | GACAGACAGCGGAATCTGACT | 59.796 | 52.381 | 10.66 | 0.00 | 44.32 | 3.41 |
270 | 271 | 1.067565 | TGACAGACAGCGGAATCTGAC | 60.068 | 52.381 | 10.66 | 5.91 | 44.32 | 3.51 |
271 | 272 | 1.256812 | TGACAGACAGCGGAATCTGA | 58.743 | 50.000 | 10.66 | 0.00 | 44.32 | 3.27 |
272 | 273 | 1.931841 | CATGACAGACAGCGGAATCTG | 59.068 | 52.381 | 3.45 | 3.45 | 46.49 | 2.90 |
273 | 274 | 1.552337 | ACATGACAGACAGCGGAATCT | 59.448 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
275 | 276 | 1.737029 | CGACATGACAGACAGCGGAAT | 60.737 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
276 | 277 | 0.388520 | CGACATGACAGACAGCGGAA | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
277 | 278 | 1.212751 | CGACATGACAGACAGCGGA | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
278 | 279 | 1.807165 | CCGACATGACAGACAGCGG | 60.807 | 63.158 | 0.00 | 0.00 | 36.14 | 5.52 |
279 | 280 | 1.073216 | GACCGACATGACAGACAGCG | 61.073 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
280 | 281 | 0.244994 | AGACCGACATGACAGACAGC | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
281 | 282 | 1.541588 | TCAGACCGACATGACAGACAG | 59.458 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
282 | 283 | 1.616159 | TCAGACCGACATGACAGACA | 58.384 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
287 | 288 | 1.060713 | CACGTTCAGACCGACATGAC | 58.939 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
289 | 290 | 0.784178 | CACACGTTCAGACCGACATG | 59.216 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
290 | 291 | 0.319555 | CCACACGTTCAGACCGACAT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
291 | 292 | 1.066752 | CCACACGTTCAGACCGACA | 59.933 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
295 | 319 | 1.612463 | AGTAGTCCACACGTTCAGACC | 59.388 | 52.381 | 5.27 | 0.00 | 0.00 | 3.85 |
297 | 321 | 3.382227 | TGAAAGTAGTCCACACGTTCAGA | 59.618 | 43.478 | 0.00 | 0.00 | 38.76 | 3.27 |
299 | 323 | 3.491964 | CCTGAAAGTAGTCCACACGTTCA | 60.492 | 47.826 | 4.30 | 4.30 | 40.49 | 3.18 |
313 | 337 | 2.154462 | CTCAAACGGATGCCTGAAAGT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
315 | 339 | 1.879380 | CACTCAAACGGATGCCTGAAA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
392 | 416 | 4.387598 | AGCATCTACAAGCCATGAATCTC | 58.612 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
463 | 1316 | 0.693622 | TTGTAGCCCGAAATGGTGGA | 59.306 | 50.000 | 0.00 | 0.00 | 35.15 | 4.02 |
464 | 1317 | 1.201414 | GTTTGTAGCCCGAAATGGTGG | 59.799 | 52.381 | 0.00 | 0.00 | 35.15 | 4.61 |
465 | 1318 | 1.135803 | CGTTTGTAGCCCGAAATGGTG | 60.136 | 52.381 | 0.00 | 0.00 | 35.15 | 4.17 |
466 | 1319 | 1.161843 | CGTTTGTAGCCCGAAATGGT | 58.838 | 50.000 | 0.00 | 0.00 | 35.15 | 3.55 |
467 | 1320 | 0.179174 | GCGTTTGTAGCCCGAAATGG | 60.179 | 55.000 | 0.00 | 0.00 | 37.55 | 3.16 |
468 | 1321 | 3.306206 | GCGTTTGTAGCCCGAAATG | 57.694 | 52.632 | 0.00 | 0.00 | 0.00 | 2.32 |
476 | 1329 | 2.106683 | ATGCCGAGGCGTTTGTAGC | 61.107 | 57.895 | 9.78 | 0.00 | 45.51 | 3.58 |
477 | 1330 | 1.705337 | CCATGCCGAGGCGTTTGTAG | 61.705 | 60.000 | 6.03 | 0.00 | 45.51 | 2.74 |
478 | 1331 | 1.743623 | CCATGCCGAGGCGTTTGTA | 60.744 | 57.895 | 6.03 | 0.00 | 45.51 | 2.41 |
479 | 1332 | 3.055719 | CCATGCCGAGGCGTTTGT | 61.056 | 61.111 | 6.03 | 0.00 | 45.51 | 2.83 |
480 | 1333 | 3.814268 | CCCATGCCGAGGCGTTTG | 61.814 | 66.667 | 6.03 | 5.43 | 45.51 | 2.93 |
491 | 1344 | 3.804638 | ATAGCTGGCTGGCCCATGC | 62.805 | 63.158 | 9.28 | 10.50 | 44.33 | 4.06 |
492 | 1345 | 1.602888 | GATAGCTGGCTGGCCCATG | 60.603 | 63.158 | 9.28 | 1.07 | 44.33 | 3.66 |
493 | 1346 | 2.838467 | GGATAGCTGGCTGGCCCAT | 61.838 | 63.158 | 9.28 | 0.00 | 44.33 | 4.00 |
494 | 1347 | 3.492353 | GGATAGCTGGCTGGCCCA | 61.492 | 66.667 | 9.28 | 0.00 | 42.79 | 5.36 |
495 | 1348 | 4.277009 | GGGATAGCTGGCTGGCCC | 62.277 | 72.222 | 15.22 | 15.22 | 34.96 | 5.80 |
496 | 1349 | 4.277009 | GGGGATAGCTGGCTGGCC | 62.277 | 72.222 | 4.43 | 4.43 | 0.00 | 5.36 |
497 | 1350 | 4.277009 | GGGGGATAGCTGGCTGGC | 62.277 | 72.222 | 5.25 | 0.00 | 0.00 | 4.85 |
498 | 1351 | 2.773918 | TGGGGGATAGCTGGCTGG | 60.774 | 66.667 | 5.25 | 0.00 | 0.00 | 4.85 |
499 | 1352 | 2.049627 | GAGTGGGGGATAGCTGGCTG | 62.050 | 65.000 | 5.25 | 0.00 | 0.00 | 4.85 |
500 | 1353 | 1.768077 | GAGTGGGGGATAGCTGGCT | 60.768 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
501 | 1354 | 2.832498 | GAGTGGGGGATAGCTGGC | 59.168 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
502 | 1355 | 1.762460 | ACGAGTGGGGGATAGCTGG | 60.762 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
503 | 1356 | 1.443407 | CACGAGTGGGGGATAGCTG | 59.557 | 63.158 | 0.00 | 0.00 | 0.00 | 4.24 |
504 | 1357 | 2.435693 | GCACGAGTGGGGGATAGCT | 61.436 | 63.158 | 5.32 | 0.00 | 0.00 | 3.32 |
505 | 1358 | 1.972660 | AAGCACGAGTGGGGGATAGC | 61.973 | 60.000 | 5.32 | 0.00 | 0.00 | 2.97 |
506 | 1359 | 0.179073 | CAAGCACGAGTGGGGGATAG | 60.179 | 60.000 | 5.32 | 0.00 | 0.00 | 2.08 |
507 | 1360 | 1.904771 | CAAGCACGAGTGGGGGATA | 59.095 | 57.895 | 5.32 | 0.00 | 0.00 | 2.59 |
508 | 1361 | 2.671070 | CAAGCACGAGTGGGGGAT | 59.329 | 61.111 | 5.32 | 0.00 | 0.00 | 3.85 |
509 | 1362 | 4.329545 | GCAAGCACGAGTGGGGGA | 62.330 | 66.667 | 5.32 | 0.00 | 0.00 | 4.81 |
510 | 1363 | 4.641645 | TGCAAGCACGAGTGGGGG | 62.642 | 66.667 | 5.32 | 0.00 | 0.00 | 5.40 |
511 | 1364 | 3.052082 | CTGCAAGCACGAGTGGGG | 61.052 | 66.667 | 5.32 | 0.00 | 0.00 | 4.96 |
512 | 1365 | 1.597854 | TTCTGCAAGCACGAGTGGG | 60.598 | 57.895 | 5.32 | 0.00 | 0.00 | 4.61 |
513 | 1366 | 1.159713 | TGTTCTGCAAGCACGAGTGG | 61.160 | 55.000 | 5.32 | 0.00 | 30.59 | 4.00 |
514 | 1367 | 0.041839 | GTGTTCTGCAAGCACGAGTG | 60.042 | 55.000 | 0.00 | 0.00 | 30.59 | 3.51 |
515 | 1368 | 2.311294 | GTGTTCTGCAAGCACGAGT | 58.689 | 52.632 | 0.00 | 0.00 | 30.59 | 4.18 |
519 | 1372 | 2.050985 | GCCGTGTTCTGCAAGCAC | 60.051 | 61.111 | 0.00 | 5.25 | 0.00 | 4.40 |
520 | 1373 | 2.515757 | TGCCGTGTTCTGCAAGCA | 60.516 | 55.556 | 0.00 | 0.00 | 36.61 | 3.91 |
521 | 1374 | 2.253452 | CTGCCGTGTTCTGCAAGC | 59.747 | 61.111 | 0.00 | 0.00 | 36.98 | 4.01 |
522 | 1375 | 2.949106 | CCTGCCGTGTTCTGCAAG | 59.051 | 61.111 | 0.00 | 0.00 | 36.98 | 4.01 |
523 | 1376 | 3.286751 | GCCTGCCGTGTTCTGCAA | 61.287 | 61.111 | 0.00 | 0.00 | 36.98 | 4.08 |
526 | 1379 | 4.641645 | TGGGCCTGCCGTGTTCTG | 62.642 | 66.667 | 4.53 | 0.00 | 36.85 | 3.02 |
527 | 1380 | 3.884774 | TTGGGCCTGCCGTGTTCT | 61.885 | 61.111 | 4.53 | 0.00 | 36.85 | 3.01 |
528 | 1381 | 3.670377 | GTTGGGCCTGCCGTGTTC | 61.670 | 66.667 | 4.53 | 0.00 | 36.85 | 3.18 |
545 | 1398 | 4.570663 | CTTCTACCTCGCGGCCCG | 62.571 | 72.222 | 6.13 | 0.00 | 38.61 | 6.13 |
546 | 1399 | 2.029307 | ATTCTTCTACCTCGCGGCCC | 62.029 | 60.000 | 6.13 | 0.00 | 0.00 | 5.80 |
547 | 1400 | 0.876342 | CATTCTTCTACCTCGCGGCC | 60.876 | 60.000 | 6.13 | 0.00 | 0.00 | 6.13 |
548 | 1401 | 1.491505 | GCATTCTTCTACCTCGCGGC | 61.492 | 60.000 | 6.13 | 0.00 | 0.00 | 6.53 |
549 | 1402 | 1.209275 | CGCATTCTTCTACCTCGCGG | 61.209 | 60.000 | 6.13 | 0.00 | 37.72 | 6.46 |
550 | 1403 | 1.209275 | CCGCATTCTTCTACCTCGCG | 61.209 | 60.000 | 0.00 | 0.00 | 40.83 | 5.87 |
551 | 1404 | 0.876342 | CCCGCATTCTTCTACCTCGC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
552 | 1405 | 0.876342 | GCCCGCATTCTTCTACCTCG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
553 | 1406 | 0.533085 | GGCCCGCATTCTTCTACCTC | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
554 | 1407 | 1.271840 | TGGCCCGCATTCTTCTACCT | 61.272 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
555 | 1408 | 0.815615 | CTGGCCCGCATTCTTCTACC | 60.816 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
556 | 1409 | 1.440145 | GCTGGCCCGCATTCTTCTAC | 61.440 | 60.000 | 15.08 | 0.00 | 0.00 | 2.59 |
557 | 1410 | 1.153168 | GCTGGCCCGCATTCTTCTA | 60.153 | 57.895 | 15.08 | 0.00 | 0.00 | 2.10 |
558 | 1411 | 2.439156 | GCTGGCCCGCATTCTTCT | 60.439 | 61.111 | 15.08 | 0.00 | 0.00 | 2.85 |
559 | 1412 | 3.880846 | CGCTGGCCCGCATTCTTC | 61.881 | 66.667 | 19.88 | 0.00 | 0.00 | 2.87 |
560 | 1413 | 3.918253 | TTCGCTGGCCCGCATTCTT | 62.918 | 57.895 | 19.88 | 0.00 | 0.00 | 2.52 |
561 | 1414 | 4.408821 | TTCGCTGGCCCGCATTCT | 62.409 | 61.111 | 19.88 | 0.00 | 0.00 | 2.40 |
562 | 1415 | 3.880846 | CTTCGCTGGCCCGCATTC | 61.881 | 66.667 | 19.88 | 0.00 | 0.00 | 2.67 |
985 | 1838 | 4.838152 | CATGGTCGTGGGGGCGAG | 62.838 | 72.222 | 0.00 | 0.00 | 41.85 | 5.03 |
1240 | 2105 | 1.807573 | GAAGAACCTGCTCGGCGAG | 60.808 | 63.158 | 31.40 | 31.40 | 35.61 | 5.03 |
1322 | 2187 | 4.544047 | TGCACGCAGCCACAGACA | 62.544 | 61.111 | 0.00 | 0.00 | 44.83 | 3.41 |
1351 | 2216 | 2.118732 | TAGTCCCTCACCGCCACA | 59.881 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
1449 | 2314 | 0.108585 | AGTACAAGTGCCACACCCAG | 59.891 | 55.000 | 0.00 | 0.00 | 34.49 | 4.45 |
1475 | 2340 | 7.426410 | TCAAGTTCAGTCTTAGACAACACTAG | 58.574 | 38.462 | 15.23 | 0.14 | 34.60 | 2.57 |
1585 | 2450 | 7.924288 | GAGCGATGATTCGATTTCTAAGCACA | 61.924 | 42.308 | 0.00 | 0.00 | 45.41 | 4.57 |
1608 | 2473 | 7.550551 | ACACATGATGAACTAATAACAGGTGAG | 59.449 | 37.037 | 14.61 | 0.00 | 40.67 | 3.51 |
1672 | 2537 | 7.001674 | ACAAAACTCAGACAATATTACCACCA | 58.998 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
1801 | 2666 | 3.798515 | TCCTAAGGCCCTTTACTTCTGA | 58.201 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
1878 | 2743 | 9.166173 | GCCACAGATATGATATAATAACTTGCA | 57.834 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
1927 | 2792 | 9.809395 | ATGAACTATCTTACAGTGTAGCCTATA | 57.191 | 33.333 | 2.68 | 0.69 | 0.00 | 1.31 |
1928 | 2793 | 8.713708 | ATGAACTATCTTACAGTGTAGCCTAT | 57.286 | 34.615 | 2.68 | 0.00 | 0.00 | 2.57 |
1929 | 2794 | 9.064706 | GTATGAACTATCTTACAGTGTAGCCTA | 57.935 | 37.037 | 2.68 | 0.00 | 36.62 | 3.93 |
2181 | 3070 | 5.844004 | AGTCTACAGAGAAGAAGCGAAAAA | 58.156 | 37.500 | 0.00 | 0.00 | 31.96 | 1.94 |
2409 | 3303 | 8.327429 | GTTGGTGTTTTAATTGTTTGATGACTG | 58.673 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2410 | 3304 | 7.494298 | GGTTGGTGTTTTAATTGTTTGATGACT | 59.506 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2444 | 3347 | 1.475682 | GATTCTGGCCAAGCTTTCCAG | 59.524 | 52.381 | 27.18 | 27.18 | 46.60 | 3.86 |
2446 | 3349 | 1.747924 | GAGATTCTGGCCAAGCTTTCC | 59.252 | 52.381 | 7.01 | 1.34 | 0.00 | 3.13 |
2447 | 3350 | 2.440409 | TGAGATTCTGGCCAAGCTTTC | 58.560 | 47.619 | 7.01 | 2.96 | 0.00 | 2.62 |
2663 | 3574 | 8.625786 | TGGGACCTAAAATAAAAACAGTAGAC | 57.374 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2709 | 3620 | 9.906660 | AATAATGCTAAAAACGTGAGATTTGAA | 57.093 | 25.926 | 0.00 | 0.00 | 36.17 | 2.69 |
2752 | 3663 | 4.682787 | TCCACACGATACTATTTCTGCTG | 58.317 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
2770 | 3684 | 5.460646 | TGCGAAGATGAAAAGATTTTCCAC | 58.539 | 37.500 | 13.89 | 8.74 | 44.48 | 4.02 |
2780 | 3694 | 7.042791 | GGAAACTGAAAATTGCGAAGATGAAAA | 60.043 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2790 | 3704 | 2.584791 | CTCCGGAAACTGAAAATTGCG | 58.415 | 47.619 | 5.23 | 0.00 | 39.64 | 4.85 |
2937 | 3851 | 4.222336 | AGAGAGAGAGAGAGAGAGAGAGG | 58.778 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
2938 | 3852 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2939 | 3853 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2940 | 3854 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2941 | 3855 | 5.136068 | AGAGAGAGAGAGAGAGAGAGAGA | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
2942 | 3856 | 4.892345 | TGAGAGAGAGAGAGAGAGAGAGAG | 59.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2943 | 3857 | 4.871822 | TGAGAGAGAGAGAGAGAGAGAGA | 58.128 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
2944 | 3858 | 5.564455 | CGATGAGAGAGAGAGAGAGAGAGAG | 60.564 | 52.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2945 | 3859 | 4.279420 | CGATGAGAGAGAGAGAGAGAGAGA | 59.721 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2946 | 3860 | 4.279420 | TCGATGAGAGAGAGAGAGAGAGAG | 59.721 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3073 | 4005 | 6.705302 | ACAAAGACAGCAGAGATCAGATTAA | 58.295 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3082 | 4014 | 2.615447 | CAGCAAACAAAGACAGCAGAGA | 59.385 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
3090 | 4022 | 4.105486 | GGAACTTCACAGCAAACAAAGAC | 58.895 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3191 | 4123 | 3.490419 | GCAATTCAAAGGGCAGAGCTATG | 60.490 | 47.826 | 3.34 | 3.34 | 0.00 | 2.23 |
3202 | 4134 | 8.819974 | GGATTACATGTAATTGCAATTCAAAGG | 58.180 | 33.333 | 27.28 | 17.23 | 38.34 | 3.11 |
3334 | 4266 | 6.991655 | TGGTAAATAGTAAAATACACGTGCG | 58.008 | 36.000 | 17.22 | 0.00 | 0.00 | 5.34 |
3398 | 4330 | 9.309516 | CATGATGTTATCAGAAAAGGGAAAATG | 57.690 | 33.333 | 0.00 | 0.00 | 43.53 | 2.32 |
3679 | 4617 | 8.863872 | AAAGCTGATAGTTGGTATTACAAAGT | 57.136 | 30.769 | 0.00 | 0.00 | 31.17 | 2.66 |
3690 | 4628 | 3.535561 | ACATCGGAAAGCTGATAGTTGG | 58.464 | 45.455 | 0.00 | 0.00 | 38.05 | 3.77 |
3721 | 4679 | 1.839424 | AATTGGAGGCTTGGTACAGC | 58.161 | 50.000 | 0.00 | 0.00 | 42.39 | 4.40 |
3740 | 4698 | 7.040062 | ACGAATGGTCAACTTTCCAAATGATTA | 60.040 | 33.333 | 0.00 | 0.00 | 37.27 | 1.75 |
3748 | 4706 | 4.517453 | CCTTAACGAATGGTCAACTTTCCA | 59.483 | 41.667 | 0.00 | 0.00 | 38.14 | 3.53 |
3830 | 4789 | 8.814931 | TGGTCATCTGGTTGAAAATAAATCAAT | 58.185 | 29.630 | 0.00 | 0.00 | 38.89 | 2.57 |
3831 | 4790 | 8.187913 | TGGTCATCTGGTTGAAAATAAATCAA | 57.812 | 30.769 | 0.00 | 0.00 | 34.56 | 2.57 |
3842 | 4801 | 5.887598 | CCATTTATTCTGGTCATCTGGTTGA | 59.112 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3994 | 4953 | 1.735386 | GCAGATGCACAGTCTCACAT | 58.265 | 50.000 | 0.00 | 0.00 | 41.59 | 3.21 |
4038 | 4997 | 9.797642 | ATGATAGGAAGCAACATTCACATTATA | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
4039 | 4998 | 8.701908 | ATGATAGGAAGCAACATTCACATTAT | 57.298 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
4070 | 5029 | 7.239763 | TCATCAGTCTTCACATTAACCAGTA | 57.760 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4270 | 5229 | 3.595190 | AAACTTGGAAGCTTACCAGGT | 57.405 | 42.857 | 19.78 | 19.78 | 46.85 | 4.00 |
4478 | 5437 | 3.057033 | GCCATCAGCTGACAACAGAAATT | 60.057 | 43.478 | 20.97 | 0.00 | 46.03 | 1.82 |
4667 | 5626 | 3.154710 | CCACTTTCCTTTAACTGTCCCC | 58.845 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
4693 | 5652 | 3.350219 | TTTCGAAGAAGGGGGATCAAG | 57.650 | 47.619 | 0.00 | 0.00 | 45.90 | 3.02 |
4740 | 5699 | 2.751166 | TCAGTGGCTTAGAACAGAGC | 57.249 | 50.000 | 0.00 | 0.00 | 38.17 | 4.09 |
4836 | 5795 | 4.365514 | TGGTACTTGCTCATTCAAAGGA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
4893 | 5852 | 0.522180 | ACTCGGCACAGAACTACTCG | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5204 | 6170 | 4.819630 | ACGAGCAAAAGATAAACAGTCCAA | 59.180 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
5273 | 6239 | 6.714810 | AGATGTACTTCAACATAAAAGCACCA | 59.285 | 34.615 | 11.02 | 0.00 | 40.17 | 4.17 |
5458 | 6424 | 4.341366 | AGGCAAAAGGAGACAATTTTGG | 57.659 | 40.909 | 11.16 | 0.00 | 43.42 | 3.28 |
5539 | 6505 | 2.338577 | ATGTTCACCTAGATGCCAGC | 57.661 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5668 | 6645 | 3.009723 | CCTGCAGGACACGATGTTTATT | 58.990 | 45.455 | 29.88 | 0.00 | 37.39 | 1.40 |
5699 | 6677 | 6.864165 | GGTCTCCATATGAATACGAGTTTCTC | 59.136 | 42.308 | 3.65 | 0.00 | 0.00 | 2.87 |
5858 | 6836 | 3.085533 | CTCTTCCTTCTCGAACTCCTCA | 58.914 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5900 | 6878 | 2.985282 | CCAGCAGCCTTTTCCGCA | 60.985 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
5918 | 6896 | 0.760567 | AGACCGGCTATCCTGATGCA | 60.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
6120 | 7100 | 0.613260 | AGAAGAATACGTGCCAGGCA | 59.387 | 50.000 | 11.22 | 11.22 | 35.60 | 4.75 |
6234 | 7224 | 3.885724 | TCTGACCAGCGACATGAATAA | 57.114 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
6252 | 7242 | 6.729690 | TTGTTCCCAATGACAAAATCTTCT | 57.270 | 33.333 | 0.00 | 0.00 | 33.19 | 2.85 |
6258 | 7248 | 5.884792 | AGCAAAATTGTTCCCAATGACAAAA | 59.115 | 32.000 | 0.00 | 0.00 | 40.42 | 2.44 |
6263 | 7253 | 4.527816 | AGCTAGCAAAATTGTTCCCAATGA | 59.472 | 37.500 | 18.83 | 0.00 | 40.42 | 2.57 |
6270 | 7260 | 6.697019 | TGAAAACAGAGCTAGCAAAATTGTTC | 59.303 | 34.615 | 18.83 | 11.84 | 0.00 | 3.18 |
6283 | 7273 | 5.415701 | TCTCAAAAACAGTGAAAACAGAGCT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 4.09 |
6290 | 7280 | 9.487790 | AATCAAAACTCTCAAAAACAGTGAAAA | 57.512 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
6296 | 7286 | 9.237846 | GTCCTAAATCAAAACTCTCAAAAACAG | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
6299 | 7289 | 8.966868 | ACTGTCCTAAATCAAAACTCTCAAAAA | 58.033 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
6312 | 7302 | 3.820467 | CCAGCAAACACTGTCCTAAATCA | 59.180 | 43.478 | 0.00 | 0.00 | 35.83 | 2.57 |
6318 | 7308 | 1.529244 | GCCCAGCAAACACTGTCCT | 60.529 | 57.895 | 0.00 | 0.00 | 35.83 | 3.85 |
6320 | 7310 | 2.908073 | CGGCCCAGCAAACACTGTC | 61.908 | 63.158 | 0.00 | 0.00 | 35.83 | 3.51 |
6321 | 7311 | 2.902423 | TTCGGCCCAGCAAACACTGT | 62.902 | 55.000 | 0.00 | 0.00 | 35.83 | 3.55 |
6322 | 7312 | 2.192861 | TTCGGCCCAGCAAACACTG | 61.193 | 57.895 | 0.00 | 0.00 | 37.42 | 3.66 |
6323 | 7313 | 2.193536 | GTTCGGCCCAGCAAACACT | 61.194 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
6324 | 7314 | 2.335011 | GTTCGGCCCAGCAAACAC | 59.665 | 61.111 | 0.00 | 0.00 | 0.00 | 3.32 |
6326 | 7316 | 4.700365 | GCGTTCGGCCCAGCAAAC | 62.700 | 66.667 | 0.00 | 0.00 | 34.80 | 2.93 |
6410 | 7400 | 3.564644 | CCATGAAAATGCAGCCAACAAAA | 59.435 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
6412 | 7402 | 2.367894 | TCCATGAAAATGCAGCCAACAA | 59.632 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
6414 | 7404 | 2.747396 | TCCATGAAAATGCAGCCAAC | 57.253 | 45.000 | 0.00 | 0.00 | 0.00 | 3.77 |
6415 | 7405 | 4.710865 | TCTTATCCATGAAAATGCAGCCAA | 59.289 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
6418 | 7408 | 5.839621 | ACATCTTATCCATGAAAATGCAGC | 58.160 | 37.500 | 0.00 | 0.00 | 0.00 | 5.25 |
6421 | 7411 | 7.381408 | CACATGACATCTTATCCATGAAAATGC | 59.619 | 37.037 | 0.00 | 0.00 | 38.83 | 3.56 |
6422 | 7412 | 8.410912 | ACACATGACATCTTATCCATGAAAATG | 58.589 | 33.333 | 0.00 | 0.00 | 38.83 | 2.32 |
6436 | 7426 | 9.467258 | CAAAACTTTGAATTACACATGACATCT | 57.533 | 29.630 | 0.00 | 0.00 | 40.55 | 2.90 |
6437 | 7427 | 8.216453 | GCAAAACTTTGAATTACACATGACATC | 58.784 | 33.333 | 0.00 | 0.00 | 40.55 | 3.06 |
6445 | 7456 | 7.165647 | GCAAATTGGCAAAACTTTGAATTACAC | 59.834 | 33.333 | 22.40 | 5.29 | 40.55 | 2.90 |
6477 | 7488 | 8.666573 | CAATTGCAATATGAAAAGGCACAATTA | 58.333 | 29.630 | 13.39 | 0.00 | 34.45 | 1.40 |
6480 | 7491 | 6.228995 | TCAATTGCAATATGAAAAGGCACAA | 58.771 | 32.000 | 13.39 | 0.00 | 33.66 | 3.33 |
6497 | 7508 | 4.740268 | TCATCTCAACATTGCTCAATTGC | 58.260 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
6549 | 7560 | 4.379186 | CCTGTTCATGTTGCTCATCTCAAC | 60.379 | 45.833 | 0.00 | 0.00 | 42.91 | 3.18 |
6550 | 7561 | 3.754850 | CCTGTTCATGTTGCTCATCTCAA | 59.245 | 43.478 | 0.00 | 0.00 | 34.09 | 3.02 |
6551 | 7562 | 3.340928 | CCTGTTCATGTTGCTCATCTCA | 58.659 | 45.455 | 0.00 | 0.00 | 34.09 | 3.27 |
6552 | 7563 | 2.097142 | GCCTGTTCATGTTGCTCATCTC | 59.903 | 50.000 | 0.00 | 0.00 | 34.09 | 2.75 |
6553 | 7564 | 2.089980 | GCCTGTTCATGTTGCTCATCT | 58.910 | 47.619 | 0.00 | 0.00 | 34.09 | 2.90 |
6554 | 7565 | 1.133790 | GGCCTGTTCATGTTGCTCATC | 59.866 | 52.381 | 0.00 | 0.00 | 34.09 | 2.92 |
6555 | 7566 | 1.180029 | GGCCTGTTCATGTTGCTCAT | 58.820 | 50.000 | 0.00 | 0.00 | 37.22 | 2.90 |
6556 | 7567 | 0.111061 | AGGCCTGTTCATGTTGCTCA | 59.889 | 50.000 | 3.11 | 0.00 | 0.00 | 4.26 |
6578 | 7589 | 3.005261 | AGCCATTACAACGATTGCAACAA | 59.995 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
6589 | 7600 | 4.357142 | CATGAGAATGCAGCCATTACAAC | 58.643 | 43.478 | 0.00 | 0.00 | 41.60 | 3.32 |
6602 | 7613 | 7.827729 | TCAGGAGCATTAATATCCATGAGAATG | 59.172 | 37.037 | 17.08 | 7.99 | 35.45 | 2.67 |
6609 | 7620 | 5.221986 | TGCAGTCAGGAGCATTAATATCCAT | 60.222 | 40.000 | 17.08 | 4.34 | 35.51 | 3.41 |
6618 | 7629 | 2.157738 | GAAAGTGCAGTCAGGAGCATT | 58.842 | 47.619 | 0.00 | 0.00 | 43.44 | 3.56 |
6627 | 7638 | 5.149977 | GCTGAATTACAAGAAAGTGCAGTC | 58.850 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
6632 | 7643 | 5.669848 | GCTCTCGCTGAATTACAAGAAAGTG | 60.670 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6634 | 7645 | 4.389992 | TGCTCTCGCTGAATTACAAGAAAG | 59.610 | 41.667 | 0.00 | 0.00 | 36.97 | 2.62 |
6635 | 7646 | 4.314961 | TGCTCTCGCTGAATTACAAGAAA | 58.685 | 39.130 | 0.00 | 0.00 | 36.97 | 2.52 |
6652 | 7663 | 6.944862 | ACAGAATAGGTTCTCAAAATTGCTCT | 59.055 | 34.615 | 0.00 | 0.00 | 42.73 | 4.09 |
6766 | 7824 | 2.237643 | ACCACCAACCAAAAAGGAAACC | 59.762 | 45.455 | 0.00 | 0.00 | 41.22 | 3.27 |
6807 | 7866 | 1.953017 | CATCCTCCTCCTCTACGCG | 59.047 | 63.158 | 3.53 | 3.53 | 0.00 | 6.01 |
6813 | 7872 | 1.757423 | GCCTCAGCATCCTCCTCCTC | 61.757 | 65.000 | 0.00 | 0.00 | 39.53 | 3.71 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.