Multiple sequence alignment - TraesCS7A01G050600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G050600 chr7A 100.000 4546 0 0 1 4546 23785891 23790436 0.000000e+00 8395.0
1 TraesCS7A01G050600 chr7A 96.625 3763 99 15 796 4546 23894719 23898465 0.000000e+00 6220.0
2 TraesCS7A01G050600 chr7A 96.521 3765 101 16 796 4546 24094374 24098122 0.000000e+00 6200.0
3 TraesCS7A01G050600 chr7A 96.032 3125 91 17 796 3907 24278096 24281200 0.000000e+00 5053.0
4 TraesCS7A01G050600 chr7A 77.124 1989 378 49 1276 3229 22626245 22628191 0.000000e+00 1081.0
5 TraesCS7A01G050600 chr7A 94.704 642 12 4 3905 4546 24283074 24283693 0.000000e+00 977.0
6 TraesCS7A01G050600 chr7A 81.109 667 115 4 1262 1920 22666144 22666807 1.450000e-144 523.0
7 TraesCS7A01G050600 chr7A 74.759 1244 247 51 2019 3231 23363421 23364628 3.160000e-136 496.0
8 TraesCS7A01G050600 chr7A 99.000 100 1 0 1 100 63729203 63729302 3.610000e-41 180.0
9 TraesCS7A01G050600 chr4A 93.469 2358 126 14 2206 4546 706498302 706495956 0.000000e+00 3476.0
10 TraesCS7A01G050600 chr4A 92.523 1391 74 13 846 2224 706499686 706498314 0.000000e+00 1965.0
11 TraesCS7A01G050600 chr4A 82.927 2214 282 53 1103 3248 706553118 706555303 0.000000e+00 1906.0
12 TraesCS7A01G050600 chr4A 80.967 662 115 5 1262 1915 704302376 704301718 8.720000e-142 514.0
13 TraesCS7A01G050600 chr4A 80.551 653 119 3 1276 1920 711840149 711840801 3.160000e-136 496.0
14 TraesCS7A01G050600 chr4A 80.245 653 121 4 1276 1920 711778923 711779575 6.840000e-133 484.0
15 TraesCS7A01G050600 chr4A 82.383 386 59 7 3246 3628 706555423 706555802 1.220000e-85 327.0
16 TraesCS7A01G050600 chr4A 99.020 102 1 0 1 102 5402879 5402980 2.790000e-42 183.0
17 TraesCS7A01G050600 chr3A 97.059 544 13 3 100 640 14861810 14861267 0.000000e+00 913.0
18 TraesCS7A01G050600 chr3A 98.077 104 1 1 1 103 727635548 727635651 3.610000e-41 180.0
19 TraesCS7A01G050600 chr3A 98.113 53 1 0 4134 4186 696239715 696239767 4.840000e-15 93.5
20 TraesCS7A01G050600 chr1A 97.032 539 13 3 105 641 554580201 554579664 0.000000e+00 904.0
21 TraesCS7A01G050600 chr1A 83.956 455 30 19 4128 4546 485348608 485348161 3.300000e-106 396.0
22 TraesCS7A01G050600 chr1A 89.474 114 12 0 3930 4043 485348721 485348608 1.320000e-30 145.0
23 TraesCS7A01G050600 chr3D 97.032 539 11 4 106 640 426433549 426434086 0.000000e+00 902.0
24 TraesCS7A01G050600 chr3D 95.495 111 3 2 1 109 569742729 569742839 4.670000e-40 176.0
25 TraesCS7A01G050600 chr2A 96.691 544 15 3 100 641 9787575 9787033 0.000000e+00 902.0
26 TraesCS7A01G050600 chr2A 96.691 544 15 3 100 641 9794575 9794033 0.000000e+00 902.0
27 TraesCS7A01G050600 chr2A 96.846 539 15 2 100 637 736259059 736258522 0.000000e+00 900.0
28 TraesCS7A01G050600 chr2A 96.507 544 16 3 100 641 9179117 9179659 0.000000e+00 896.0
29 TraesCS7A01G050600 chr2A 78.512 363 70 7 2251 2609 81066116 81066474 9.840000e-57 231.0
30 TraesCS7A01G050600 chr2A 98.077 104 1 1 1 103 604974941 604974838 3.610000e-41 180.0
31 TraesCS7A01G050600 chr5A 96.840 538 15 2 105 641 31063530 31062994 0.000000e+00 898.0
32 TraesCS7A01G050600 chr5A 74.373 1237 260 44 2019 3231 41967562 41968765 4.120000e-130 475.0
33 TraesCS7A01G050600 chr5A 78.438 640 128 7 1283 1915 41966851 41967487 4.230000e-110 409.0
34 TraesCS7A01G050600 chr5A 99.000 100 1 0 1 100 431822685 431822586 3.610000e-41 180.0
35 TraesCS7A01G050600 chr5A 99.000 100 1 0 1 100 556404849 556404948 3.610000e-41 180.0
36 TraesCS7A01G050600 chr5D 96.514 545 13 5 100 640 424283898 424283356 0.000000e+00 896.0
37 TraesCS7A01G050600 chr5D 99.010 101 1 0 1 101 38387313 38387213 1.000000e-41 182.0
38 TraesCS7A01G050600 chr5D 84.177 158 25 0 3033 3190 72910376 72910219 2.190000e-33 154.0
39 TraesCS7A01G050600 chr7D 83.333 966 99 30 1076 2014 23071503 23070573 0.000000e+00 835.0
40 TraesCS7A01G050600 chr7D 78.848 1007 184 21 2252 3247 21938671 21937683 0.000000e+00 652.0
41 TraesCS7A01G050600 chr7D 80.660 667 118 4 1262 1920 21939681 21939018 1.460000e-139 507.0
42 TraesCS7A01G050600 chr7D 78.095 210 43 3 3039 3247 22919893 22920100 3.690000e-26 130.0
43 TraesCS7A01G050600 chrUn 81.118 662 114 5 1262 1915 313747307 313746649 1.870000e-143 520.0
44 TraesCS7A01G050600 chrUn 80.967 662 115 5 1262 1915 50554671 50554013 8.720000e-142 514.0
45 TraesCS7A01G050600 chr1B 83.405 464 30 12 4128 4546 517912512 517912051 1.980000e-103 387.0
46 TraesCS7A01G050600 chr1B 90.351 114 11 0 3930 4043 517912625 517912512 2.830000e-32 150.0
47 TraesCS7A01G050600 chr1D 92.179 179 11 3 4370 4546 385627163 385626986 2.720000e-62 250.0
48 TraesCS7A01G050600 chr1D 88.596 114 13 0 3930 4043 385627552 385627439 6.130000e-29 139.0
49 TraesCS7A01G050600 chr2B 79.037 353 70 4 2259 2609 132279119 132279469 5.880000e-59 239.0
50 TraesCS7A01G050600 chr3B 89.944 179 14 4 4370 4546 744211995 744212171 1.270000e-55 228.0
51 TraesCS7A01G050600 chr2D 78.453 362 68 10 2251 2609 80658010 80658364 1.270000e-55 228.0
52 TraesCS7A01G050600 chr6D 91.736 121 8 2 1 120 301740441 301740322 2.810000e-37 167.0
53 TraesCS7A01G050600 chr6D 82.906 117 20 0 3919 4035 21353757 21353873 6.220000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G050600 chr7A 23785891 23790436 4545 False 8395.0 8395 100.0000 1 4546 1 chr7A.!!$F4 4545
1 TraesCS7A01G050600 chr7A 23894719 23898465 3746 False 6220.0 6220 96.6250 796 4546 1 chr7A.!!$F5 3750
2 TraesCS7A01G050600 chr7A 24094374 24098122 3748 False 6200.0 6200 96.5210 796 4546 1 chr7A.!!$F6 3750
3 TraesCS7A01G050600 chr7A 24278096 24283693 5597 False 3015.0 5053 95.3680 796 4546 2 chr7A.!!$F8 3750
4 TraesCS7A01G050600 chr7A 22626245 22628191 1946 False 1081.0 1081 77.1240 1276 3229 1 chr7A.!!$F1 1953
5 TraesCS7A01G050600 chr7A 22666144 22666807 663 False 523.0 523 81.1090 1262 1920 1 chr7A.!!$F2 658
6 TraesCS7A01G050600 chr7A 23363421 23364628 1207 False 496.0 496 74.7590 2019 3231 1 chr7A.!!$F3 1212
7 TraesCS7A01G050600 chr4A 706495956 706499686 3730 True 2720.5 3476 92.9960 846 4546 2 chr4A.!!$R2 3700
8 TraesCS7A01G050600 chr4A 706553118 706555802 2684 False 1116.5 1906 82.6550 1103 3628 2 chr4A.!!$F4 2525
9 TraesCS7A01G050600 chr4A 704301718 704302376 658 True 514.0 514 80.9670 1262 1915 1 chr4A.!!$R1 653
10 TraesCS7A01G050600 chr4A 711840149 711840801 652 False 496.0 496 80.5510 1276 1920 1 chr4A.!!$F3 644
11 TraesCS7A01G050600 chr4A 711778923 711779575 652 False 484.0 484 80.2450 1276 1920 1 chr4A.!!$F2 644
12 TraesCS7A01G050600 chr3A 14861267 14861810 543 True 913.0 913 97.0590 100 640 1 chr3A.!!$R1 540
13 TraesCS7A01G050600 chr1A 554579664 554580201 537 True 904.0 904 97.0320 105 641 1 chr1A.!!$R1 536
14 TraesCS7A01G050600 chr1A 485348161 485348721 560 True 270.5 396 86.7150 3930 4546 2 chr1A.!!$R2 616
15 TraesCS7A01G050600 chr3D 426433549 426434086 537 False 902.0 902 97.0320 106 640 1 chr3D.!!$F1 534
16 TraesCS7A01G050600 chr2A 9787033 9787575 542 True 902.0 902 96.6910 100 641 1 chr2A.!!$R1 541
17 TraesCS7A01G050600 chr2A 9794033 9794575 542 True 902.0 902 96.6910 100 641 1 chr2A.!!$R2 541
18 TraesCS7A01G050600 chr2A 736258522 736259059 537 True 900.0 900 96.8460 100 637 1 chr2A.!!$R4 537
19 TraesCS7A01G050600 chr2A 9179117 9179659 542 False 896.0 896 96.5070 100 641 1 chr2A.!!$F1 541
20 TraesCS7A01G050600 chr5A 31062994 31063530 536 True 898.0 898 96.8400 105 641 1 chr5A.!!$R1 536
21 TraesCS7A01G050600 chr5A 41966851 41968765 1914 False 442.0 475 76.4055 1283 3231 2 chr5A.!!$F2 1948
22 TraesCS7A01G050600 chr5D 424283356 424283898 542 True 896.0 896 96.5140 100 640 1 chr5D.!!$R3 540
23 TraesCS7A01G050600 chr7D 23070573 23071503 930 True 835.0 835 83.3330 1076 2014 1 chr7D.!!$R1 938
24 TraesCS7A01G050600 chr7D 21937683 21939681 1998 True 579.5 652 79.7540 1262 3247 2 chr7D.!!$R2 1985
25 TraesCS7A01G050600 chrUn 313746649 313747307 658 True 520.0 520 81.1180 1262 1915 1 chrUn.!!$R2 653
26 TraesCS7A01G050600 chrUn 50554013 50554671 658 True 514.0 514 80.9670 1262 1915 1 chrUn.!!$R1 653
27 TraesCS7A01G050600 chr1B 517912051 517912625 574 True 268.5 387 86.8780 3930 4546 2 chr1B.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 791 0.035915 GTGGAACAGGAAGCTCTCCC 60.036 60.000 10.27 2.17 46.81 4.30 F
1039 1048 0.108329 CAACCGTGGCAGGTAGGTAG 60.108 60.000 6.43 0.00 45.21 3.18 F
1040 1049 0.251922 AACCGTGGCAGGTAGGTAGA 60.252 55.000 6.43 0.00 45.21 2.59 F
1786 1832 0.597072 GAAGGTTGTCGTCGAGGAGT 59.403 55.000 8.30 0.00 0.00 3.85 F
3184 3380 1.067142 CAGTAGCTAACAAGGGCGTCA 60.067 52.381 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2764 2944 0.253160 AGGGGTCTGCCTTATCCACA 60.253 55.000 0.0 0.00 34.45 4.17 R
3184 3380 4.923871 CGCGGCATCAGTTATAAATAGAGT 59.076 41.667 0.0 0.00 0.00 3.24 R
3340 3658 0.388294 TCTGCAGCATCGATGGAGAG 59.612 55.000 26.0 10.22 41.07 3.20 R
3361 3679 1.209747 GTACCTCAGCCCCCTGTTAAG 59.790 57.143 0.0 0.00 40.09 1.85 R
4416 6682 1.944024 CAGGCTTGACGTTGTACCAAA 59.056 47.619 0.0 0.00 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.573558 CACGAACCGGGACCAATG 58.426 61.111 6.32 0.00 28.17 2.82
18 19 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
19 20 2.046314 CGAACCGGGACCAATGCT 60.046 61.111 6.32 0.00 0.00 3.79
20 21 2.106683 CGAACCGGGACCAATGCTC 61.107 63.158 6.32 0.00 0.00 4.26
21 22 1.002624 GAACCGGGACCAATGCTCA 60.003 57.895 6.32 0.00 0.00 4.26
22 23 1.303317 AACCGGGACCAATGCTCAC 60.303 57.895 6.32 0.00 0.00 3.51
23 24 2.063015 AACCGGGACCAATGCTCACA 62.063 55.000 6.32 0.00 0.00 3.58
24 25 1.077501 CCGGGACCAATGCTCACAT 60.078 57.895 0.00 0.00 38.49 3.21
26 27 1.408127 CCGGGACCAATGCTCACATTA 60.408 52.381 0.00 0.00 44.83 1.90
27 28 1.942657 CGGGACCAATGCTCACATTAG 59.057 52.381 0.00 0.00 44.83 1.73
28 29 2.680805 CGGGACCAATGCTCACATTAGT 60.681 50.000 0.00 0.00 44.83 2.24
31 32 2.945668 GACCAATGCTCACATTAGTCCC 59.054 50.000 6.20 0.00 44.37 4.46
32 33 1.942657 CCAATGCTCACATTAGTCCCG 59.057 52.381 0.00 0.00 44.83 5.14
33 34 1.942657 CAATGCTCACATTAGTCCCGG 59.057 52.381 0.00 0.00 44.83 5.73
34 35 1.204146 ATGCTCACATTAGTCCCGGT 58.796 50.000 0.00 0.00 30.07 5.28
35 36 0.981183 TGCTCACATTAGTCCCGGTT 59.019 50.000 0.00 0.00 0.00 4.44
36 37 1.066430 TGCTCACATTAGTCCCGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
37 38 1.922570 CTCACATTAGTCCCGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
38 39 1.203994 CTCACATTAGTCCCGGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
39 40 1.067425 TCACATTAGTCCCGGTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
40 41 1.067425 CACATTAGTCCCGGTTCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
41 42 1.067354 ACATTAGTCCCGGTTCGTGAC 60.067 52.381 0.00 0.00 34.71 3.67
42 43 1.203994 CATTAGTCCCGGTTCGTGACT 59.796 52.381 13.76 13.76 45.32 3.41
43 44 0.599558 TTAGTCCCGGTTCGTGACTG 59.400 55.000 17.52 0.00 43.49 3.51
44 45 0.250858 TAGTCCCGGTTCGTGACTGA 60.251 55.000 17.52 2.93 43.49 3.41
45 46 1.111116 AGTCCCGGTTCGTGACTGAA 61.111 55.000 9.22 0.00 42.28 3.02
46 47 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
50 51 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
51 52 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
52 53 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
53 54 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
54 55 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
55 56 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
56 57 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
57 58 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
58 59 2.028385 GTGACTGAACCGGGACTAATGT 60.028 50.000 6.32 0.00 0.00 2.71
59 60 2.028476 TGACTGAACCGGGACTAATGTG 60.028 50.000 6.32 0.00 0.00 3.21
60 61 2.232941 GACTGAACCGGGACTAATGTGA 59.767 50.000 6.32 0.00 0.00 3.58
61 62 2.635915 ACTGAACCGGGACTAATGTGAA 59.364 45.455 6.32 0.00 0.00 3.18
62 63 3.263425 ACTGAACCGGGACTAATGTGAAT 59.737 43.478 6.32 0.00 0.00 2.57
63 64 4.468510 ACTGAACCGGGACTAATGTGAATA 59.531 41.667 6.32 0.00 0.00 1.75
64 65 5.130477 ACTGAACCGGGACTAATGTGAATAT 59.870 40.000 6.32 0.00 0.00 1.28
65 66 5.996644 TGAACCGGGACTAATGTGAATATT 58.003 37.500 6.32 0.00 0.00 1.28
66 67 6.419791 TGAACCGGGACTAATGTGAATATTT 58.580 36.000 6.32 0.00 0.00 1.40
67 68 6.540914 TGAACCGGGACTAATGTGAATATTTC 59.459 38.462 6.32 0.00 0.00 2.17
68 69 5.374071 ACCGGGACTAATGTGAATATTTCC 58.626 41.667 6.32 0.00 0.00 3.13
69 70 4.760204 CCGGGACTAATGTGAATATTTCCC 59.240 45.833 7.31 7.31 35.28 3.97
70 71 4.760204 CGGGACTAATGTGAATATTTCCCC 59.240 45.833 10.62 0.00 35.22 4.81
71 72 4.760204 GGGACTAATGTGAATATTTCCCCG 59.240 45.833 6.37 0.00 33.67 5.73
72 73 5.374071 GGACTAATGTGAATATTTCCCCGT 58.626 41.667 0.00 0.00 0.00 5.28
73 74 5.238650 GGACTAATGTGAATATTTCCCCGTG 59.761 44.000 0.00 0.00 0.00 4.94
74 75 5.996644 ACTAATGTGAATATTTCCCCGTGA 58.003 37.500 0.00 0.00 0.00 4.35
75 76 5.820947 ACTAATGTGAATATTTCCCCGTGAC 59.179 40.000 0.00 0.00 0.00 3.67
76 77 2.993937 TGTGAATATTTCCCCGTGACC 58.006 47.619 0.00 0.00 0.00 4.02
77 78 2.306219 TGTGAATATTTCCCCGTGACCA 59.694 45.455 0.00 0.00 0.00 4.02
78 79 3.244946 TGTGAATATTTCCCCGTGACCAA 60.245 43.478 0.00 0.00 0.00 3.67
79 80 3.759618 GTGAATATTTCCCCGTGACCAAA 59.240 43.478 0.00 0.00 0.00 3.28
80 81 4.013728 TGAATATTTCCCCGTGACCAAAG 58.986 43.478 0.00 0.00 0.00 2.77
81 82 1.828979 TATTTCCCCGTGACCAAAGC 58.171 50.000 0.00 0.00 0.00 3.51
82 83 0.898326 ATTTCCCCGTGACCAAAGCC 60.898 55.000 0.00 0.00 0.00 4.35
83 84 2.987355 TTTCCCCGTGACCAAAGCCC 62.987 60.000 0.00 0.00 0.00 5.19
84 85 3.966543 CCCCGTGACCAAAGCCCT 61.967 66.667 0.00 0.00 0.00 5.19
85 86 2.672996 CCCGTGACCAAAGCCCTG 60.673 66.667 0.00 0.00 0.00 4.45
86 87 2.113139 CCGTGACCAAAGCCCTGT 59.887 61.111 0.00 0.00 0.00 4.00
87 88 1.528309 CCGTGACCAAAGCCCTGTT 60.528 57.895 0.00 0.00 0.00 3.16
88 89 1.106944 CCGTGACCAAAGCCCTGTTT 61.107 55.000 0.00 0.00 0.00 2.83
89 90 0.744281 CGTGACCAAAGCCCTGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
90 91 1.269051 CGTGACCAAAGCCCTGTTTTC 60.269 52.381 0.00 0.00 0.00 2.29
91 92 2.031870 GTGACCAAAGCCCTGTTTTCT 58.968 47.619 0.00 0.00 0.00 2.52
92 93 3.219281 GTGACCAAAGCCCTGTTTTCTA 58.781 45.455 0.00 0.00 0.00 2.10
93 94 3.004419 GTGACCAAAGCCCTGTTTTCTAC 59.996 47.826 0.00 0.00 0.00 2.59
94 95 3.117663 TGACCAAAGCCCTGTTTTCTACT 60.118 43.478 0.00 0.00 0.00 2.57
95 96 4.103469 TGACCAAAGCCCTGTTTTCTACTA 59.897 41.667 0.00 0.00 0.00 1.82
96 97 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
97 98 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
98 99 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
102 103 3.306780 GCCCTGTTTTCTACTAGTGAGCA 60.307 47.826 5.39 0.00 0.00 4.26
203 204 0.758310 GTAGCTAGGTTACCCGCCCT 60.758 60.000 0.00 0.00 35.12 5.19
399 402 0.608130 ACGTGACTTATGGAGCTGCA 59.392 50.000 11.44 11.44 0.00 4.41
637 642 4.792804 GGGAGCACTGGAGCAGGC 62.793 72.222 0.00 0.00 35.51 4.85
638 643 3.715097 GGAGCACTGGAGCAGGCT 61.715 66.667 0.00 0.00 39.42 4.58
639 644 2.125188 GAGCACTGGAGCAGGCTC 60.125 66.667 12.78 12.78 42.54 4.70
647 652 3.005539 GAGCAGGCTCCAGGTGGA 61.006 66.667 10.15 0.00 43.08 4.02
648 653 3.322318 GAGCAGGCTCCAGGTGGAC 62.322 68.421 10.15 0.00 39.78 4.02
649 654 3.640407 GCAGGCTCCAGGTGGACA 61.640 66.667 0.00 0.00 39.78 4.02
650 655 2.976490 GCAGGCTCCAGGTGGACAT 61.976 63.158 0.00 0.00 39.78 3.06
651 656 1.077930 CAGGCTCCAGGTGGACATG 60.078 63.158 0.00 0.00 39.78 3.21
653 658 2.439156 GCTCCAGGTGGACATGGC 60.439 66.667 5.57 0.00 46.58 4.40
654 659 2.124983 CTCCAGGTGGACATGGCG 60.125 66.667 5.57 0.00 46.58 5.69
655 660 4.408821 TCCAGGTGGACATGGCGC 62.409 66.667 5.57 0.00 46.58 6.53
670 675 3.342627 CGCGGTGCACCTTTCGAA 61.343 61.111 32.28 0.00 0.00 3.71
671 676 2.677003 CGCGGTGCACCTTTCGAAT 61.677 57.895 32.28 0.00 0.00 3.34
672 677 1.579429 GCGGTGCACCTTTCGAATT 59.421 52.632 32.28 0.00 0.00 2.17
673 678 0.039527 GCGGTGCACCTTTCGAATTT 60.040 50.000 32.28 0.00 0.00 1.82
674 679 1.963747 CGGTGCACCTTTCGAATTTC 58.036 50.000 32.28 2.75 0.00 2.17
675 680 1.401018 CGGTGCACCTTTCGAATTTCC 60.401 52.381 32.28 2.50 0.00 3.13
676 681 1.401018 GGTGCACCTTTCGAATTTCCG 60.401 52.381 29.12 0.00 0.00 4.30
677 682 1.533731 GTGCACCTTTCGAATTTCCGA 59.466 47.619 5.22 0.00 36.70 4.55
678 683 2.031508 GTGCACCTTTCGAATTTCCGAA 60.032 45.455 5.22 0.00 45.45 4.30
679 684 2.031508 TGCACCTTTCGAATTTCCGAAC 60.032 45.455 0.00 0.00 46.56 3.95
680 685 2.031508 GCACCTTTCGAATTTCCGAACA 60.032 45.455 0.00 0.00 46.56 3.18
681 686 3.551551 CACCTTTCGAATTTCCGAACAC 58.448 45.455 0.00 0.00 46.56 3.32
682 687 3.250040 CACCTTTCGAATTTCCGAACACT 59.750 43.478 0.00 0.00 46.56 3.55
683 688 3.881089 ACCTTTCGAATTTCCGAACACTT 59.119 39.130 0.00 0.00 46.56 3.16
684 689 4.337274 ACCTTTCGAATTTCCGAACACTTT 59.663 37.500 0.00 0.00 46.56 2.66
685 690 5.163591 ACCTTTCGAATTTCCGAACACTTTT 60.164 36.000 0.00 0.00 46.56 2.27
686 691 5.746721 CCTTTCGAATTTCCGAACACTTTTT 59.253 36.000 0.00 0.00 46.56 1.94
687 692 6.291585 CCTTTCGAATTTCCGAACACTTTTTG 60.292 38.462 0.00 0.00 46.56 2.44
688 693 4.602995 TCGAATTTCCGAACACTTTTTGG 58.397 39.130 0.00 0.00 35.42 3.28
689 694 4.335874 TCGAATTTCCGAACACTTTTTGGA 59.664 37.500 0.00 0.00 35.42 3.53
690 695 5.009210 TCGAATTTCCGAACACTTTTTGGAT 59.991 36.000 0.00 0.00 35.42 3.41
691 696 5.689961 CGAATTTCCGAACACTTTTTGGATT 59.310 36.000 0.00 0.00 0.00 3.01
692 697 6.129194 CGAATTTCCGAACACTTTTTGGATTC 60.129 38.462 0.00 0.00 0.00 2.52
693 698 5.584253 TTTCCGAACACTTTTTGGATTCA 57.416 34.783 0.00 0.00 0.00 2.57
694 699 5.782893 TTCCGAACACTTTTTGGATTCAT 57.217 34.783 0.00 0.00 0.00 2.57
695 700 6.885952 TTCCGAACACTTTTTGGATTCATA 57.114 33.333 0.00 0.00 0.00 2.15
696 701 6.885952 TCCGAACACTTTTTGGATTCATAA 57.114 33.333 0.00 0.00 0.00 1.90
697 702 7.278461 TCCGAACACTTTTTGGATTCATAAA 57.722 32.000 0.00 0.00 0.00 1.40
698 703 7.142680 TCCGAACACTTTTTGGATTCATAAAC 58.857 34.615 0.00 0.00 0.00 2.01
699 704 6.920758 CCGAACACTTTTTGGATTCATAAACA 59.079 34.615 0.00 0.00 0.00 2.83
700 705 7.598493 CCGAACACTTTTTGGATTCATAAACAT 59.402 33.333 0.00 0.00 0.00 2.71
701 706 8.977505 CGAACACTTTTTGGATTCATAAACATT 58.022 29.630 0.00 0.00 0.00 2.71
716 721 9.502145 TTCATAAACATTATCTTCAATTCACGC 57.498 29.630 0.00 0.00 0.00 5.34
717 722 8.128582 TCATAAACATTATCTTCAATTCACGCC 58.871 33.333 0.00 0.00 0.00 5.68
718 723 4.900635 ACATTATCTTCAATTCACGCCC 57.099 40.909 0.00 0.00 0.00 6.13
719 724 3.312421 ACATTATCTTCAATTCACGCCCG 59.688 43.478 0.00 0.00 0.00 6.13
720 725 2.684001 TATCTTCAATTCACGCCCGT 57.316 45.000 0.00 0.00 0.00 5.28
721 726 1.821216 ATCTTCAATTCACGCCCGTT 58.179 45.000 0.00 0.00 0.00 4.44
722 727 2.459060 TCTTCAATTCACGCCCGTTA 57.541 45.000 0.00 0.00 0.00 3.18
723 728 2.343101 TCTTCAATTCACGCCCGTTAG 58.657 47.619 0.00 0.00 0.00 2.34
724 729 0.800012 TTCAATTCACGCCCGTTAGC 59.200 50.000 0.00 0.00 0.00 3.09
725 730 0.036765 TCAATTCACGCCCGTTAGCT 60.037 50.000 0.00 0.00 0.00 3.32
726 731 0.373716 CAATTCACGCCCGTTAGCTC 59.626 55.000 0.00 0.00 0.00 4.09
727 732 0.249398 AATTCACGCCCGTTAGCTCT 59.751 50.000 0.00 0.00 0.00 4.09
728 733 0.179108 ATTCACGCCCGTTAGCTCTC 60.179 55.000 0.00 0.00 0.00 3.20
729 734 1.529152 TTCACGCCCGTTAGCTCTCA 61.529 55.000 0.00 0.00 0.00 3.27
730 735 1.805945 CACGCCCGTTAGCTCTCAC 60.806 63.158 0.00 0.00 0.00 3.51
731 736 2.579787 CGCCCGTTAGCTCTCACG 60.580 66.667 0.00 0.00 36.12 4.35
732 737 2.886124 GCCCGTTAGCTCTCACGC 60.886 66.667 7.35 0.00 34.98 5.34
733 738 2.579787 CCCGTTAGCTCTCACGCG 60.580 66.667 3.53 3.53 34.98 6.01
734 739 2.178521 CCGTTAGCTCTCACGCGT 59.821 61.111 5.58 5.58 34.98 6.01
735 740 2.152699 CCGTTAGCTCTCACGCGTG 61.153 63.158 32.76 32.76 34.98 5.34
736 741 2.152699 CGTTAGCTCTCACGCGTGG 61.153 63.158 36.41 26.52 34.40 4.94
737 742 1.805945 GTTAGCTCTCACGCGTGGG 60.806 63.158 36.41 34.81 34.40 4.61
738 743 3.001902 TTAGCTCTCACGCGTGGGG 62.002 63.158 36.70 27.27 34.40 4.96
740 745 4.681978 GCTCTCACGCGTGGGGTT 62.682 66.667 36.70 0.00 0.00 4.11
741 746 2.432628 CTCTCACGCGTGGGGTTC 60.433 66.667 36.70 0.00 0.00 3.62
742 747 4.351938 TCTCACGCGTGGGGTTCG 62.352 66.667 36.70 18.38 0.00 3.95
743 748 4.351938 CTCACGCGTGGGGTTCGA 62.352 66.667 36.41 16.34 0.00 3.71
744 749 3.642778 CTCACGCGTGGGGTTCGAT 62.643 63.158 36.41 0.00 0.00 3.59
745 750 3.186047 CACGCGTGGGGTTCGATC 61.186 66.667 31.15 0.00 0.00 3.69
746 751 4.789075 ACGCGTGGGGTTCGATCG 62.789 66.667 12.93 9.36 0.00 3.69
749 754 3.766691 CGTGGGGTTCGATCGGGT 61.767 66.667 16.41 0.00 0.00 5.28
750 755 2.125269 GTGGGGTTCGATCGGGTG 60.125 66.667 16.41 0.00 0.00 4.61
751 756 4.090588 TGGGGTTCGATCGGGTGC 62.091 66.667 16.41 3.08 0.00 5.01
754 759 4.814294 GGTTCGATCGGGTGCGCT 62.814 66.667 16.41 0.00 0.00 5.92
755 760 2.813908 GTTCGATCGGGTGCGCTT 60.814 61.111 16.41 0.00 0.00 4.68
756 761 2.047655 TTCGATCGGGTGCGCTTT 60.048 55.556 16.41 0.00 0.00 3.51
757 762 1.669760 TTCGATCGGGTGCGCTTTT 60.670 52.632 16.41 0.00 0.00 2.27
758 763 1.906994 TTCGATCGGGTGCGCTTTTG 61.907 55.000 16.41 0.00 0.00 2.44
759 764 2.202479 GATCGGGTGCGCTTTTGC 60.202 61.111 9.73 0.00 43.23 3.68
760 765 3.683587 GATCGGGTGCGCTTTTGCC 62.684 63.158 9.73 2.90 43.93 4.52
763 768 4.362476 GGGTGCGCTTTTGCCCTG 62.362 66.667 9.73 0.00 43.93 4.45
764 769 3.294493 GGTGCGCTTTTGCCCTGA 61.294 61.111 9.73 0.00 43.93 3.86
765 770 2.050077 GTGCGCTTTTGCCCTGAC 60.050 61.111 9.73 0.00 43.93 3.51
766 771 3.294493 TGCGCTTTTGCCCTGACC 61.294 61.111 9.73 0.00 43.93 4.02
767 772 4.404654 GCGCTTTTGCCCTGACCG 62.405 66.667 0.00 0.00 43.93 4.79
768 773 2.978010 CGCTTTTGCCCTGACCGT 60.978 61.111 0.00 0.00 43.93 4.83
769 774 2.644992 GCTTTTGCCCTGACCGTG 59.355 61.111 0.00 0.00 40.15 4.94
770 775 2.919494 GCTTTTGCCCTGACCGTGG 61.919 63.158 0.00 0.00 40.15 4.94
771 776 1.228124 CTTTTGCCCTGACCGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
772 777 0.821711 CTTTTGCCCTGACCGTGGAA 60.822 55.000 0.00 0.00 0.00 3.53
773 778 1.104577 TTTTGCCCTGACCGTGGAAC 61.105 55.000 0.00 0.00 0.00 3.62
774 779 2.272230 TTTGCCCTGACCGTGGAACA 62.272 55.000 0.00 0.00 35.74 3.18
775 780 2.358737 GCCCTGACCGTGGAACAG 60.359 66.667 0.00 2.13 41.80 3.16
785 790 3.542046 GTGGAACAGGAAGCTCTCC 57.458 57.895 6.79 6.79 45.81 3.71
786 791 0.035915 GTGGAACAGGAAGCTCTCCC 60.036 60.000 10.27 2.17 46.81 4.30
787 792 1.219393 GGAACAGGAAGCTCTCCCG 59.781 63.158 10.27 4.54 46.81 5.14
788 793 1.448717 GAACAGGAAGCTCTCCCGC 60.449 63.158 10.27 0.00 46.81 6.13
789 794 2.172483 GAACAGGAAGCTCTCCCGCA 62.172 60.000 10.27 0.00 46.81 5.69
790 795 1.557269 AACAGGAAGCTCTCCCGCAT 61.557 55.000 10.27 0.00 46.81 4.73
791 796 1.222936 CAGGAAGCTCTCCCGCATT 59.777 57.895 10.27 0.00 46.81 3.56
792 797 0.465705 CAGGAAGCTCTCCCGCATTA 59.534 55.000 10.27 0.00 46.81 1.90
793 798 1.071385 CAGGAAGCTCTCCCGCATTAT 59.929 52.381 10.27 0.00 46.81 1.28
794 799 1.771255 AGGAAGCTCTCCCGCATTATT 59.229 47.619 10.27 0.00 46.81 1.40
797 802 1.428869 AGCTCTCCCGCATTATTCCT 58.571 50.000 0.00 0.00 0.00 3.36
806 811 2.563976 CGCATTATTCCTTTCGCATCG 58.436 47.619 0.00 0.00 0.00 3.84
809 814 3.803555 CATTATTCCTTTCGCATCGCTC 58.196 45.455 0.00 0.00 0.00 5.03
810 815 2.890808 TATTCCTTTCGCATCGCTCT 57.109 45.000 0.00 0.00 0.00 4.09
812 817 1.361668 TTCCTTTCGCATCGCTCTGC 61.362 55.000 0.00 0.00 38.81 4.26
813 818 2.102438 CCTTTCGCATCGCTCTGCA 61.102 57.895 7.93 0.00 42.40 4.41
896 901 3.882326 CCCAGCATCGCCCTCCAT 61.882 66.667 0.00 0.00 0.00 3.41
897 902 2.593725 CCAGCATCGCCCTCCATG 60.594 66.667 0.00 0.00 0.00 3.66
914 922 0.327924 ATGGGTGCACTCGGATTTCA 59.672 50.000 17.98 0.00 0.00 2.69
915 923 0.321564 TGGGTGCACTCGGATTTCAG 60.322 55.000 17.98 0.00 0.00 3.02
955 963 2.004017 CGACTCGTTGAGCTCTACTCT 58.996 52.381 22.89 7.63 46.41 3.24
956 964 2.417239 CGACTCGTTGAGCTCTACTCTT 59.583 50.000 22.89 8.93 46.41 2.85
959 967 4.076394 ACTCGTTGAGCTCTACTCTTTCT 58.924 43.478 22.89 0.67 46.41 2.52
961 969 5.883673 ACTCGTTGAGCTCTACTCTTTCTAT 59.116 40.000 22.89 1.14 46.41 1.98
981 990 3.003763 GGAGACGGAAGGCCCTGT 61.004 66.667 0.00 0.00 43.69 4.00
982 991 2.266055 GAGACGGAAGGCCCTGTG 59.734 66.667 0.00 0.00 43.69 3.66
1012 1021 9.744468 CGCAGCCTACATATATATAAATACACA 57.256 33.333 0.00 0.00 0.00 3.72
1025 1034 0.250553 ATACACACACCCCACAACCG 60.251 55.000 0.00 0.00 0.00 4.44
1026 1035 1.624479 TACACACACCCCACAACCGT 61.624 55.000 0.00 0.00 0.00 4.83
1027 1036 2.124487 ACACACCCCACAACCGTG 60.124 61.111 0.00 0.00 43.21 4.94
1035 1044 3.966215 CACAACCGTGGCAGGTAG 58.034 61.111 6.43 0.00 45.21 3.18
1036 1045 1.671054 CACAACCGTGGCAGGTAGG 60.671 63.158 6.43 1.72 45.21 3.18
1037 1046 2.144738 ACAACCGTGGCAGGTAGGT 61.145 57.895 6.43 2.37 45.21 3.08
1038 1047 0.832983 ACAACCGTGGCAGGTAGGTA 60.833 55.000 6.43 0.00 45.21 3.08
1039 1048 0.108329 CAACCGTGGCAGGTAGGTAG 60.108 60.000 6.43 0.00 45.21 3.18
1040 1049 0.251922 AACCGTGGCAGGTAGGTAGA 60.252 55.000 6.43 0.00 45.21 2.59
1091 1100 3.986006 TCAGGCCTCGCGTTCGTT 61.986 61.111 0.00 0.00 36.96 3.85
1109 1118 3.755628 GTAGCCTCCGCCGTCACA 61.756 66.667 0.00 0.00 34.57 3.58
1148 1157 2.277756 GCGTCGGCGTTCTACGAT 60.278 61.111 20.68 0.00 46.05 3.73
1203 1212 2.612836 CCCCGGATCTGTCCCCTA 59.387 66.667 0.73 0.00 41.83 3.53
1241 1250 3.118454 CGCGCCCAGAACAACGAT 61.118 61.111 0.00 0.00 0.00 3.73
1470 1479 3.645660 TCCCGGACATGCTGGCAA 61.646 61.111 0.73 0.00 42.12 4.52
1476 1485 2.033141 ACATGCTGGCAAGAGCGT 59.967 55.556 4.81 0.00 42.32 5.07
1651 1685 1.133792 CGATAAAGGAGGCCCCATTGT 60.134 52.381 12.24 5.32 37.41 2.71
1756 1802 2.356313 CGGACGCTGCACTTGAGT 60.356 61.111 0.00 0.00 0.00 3.41
1786 1832 0.597072 GAAGGTTGTCGTCGAGGAGT 59.403 55.000 8.30 0.00 0.00 3.85
2291 2459 2.033424 TCAGTCGATGCACTAGAATCCG 59.967 50.000 0.00 0.00 0.00 4.18
2356 2524 3.129287 CCTAGCGGAAAAATTGCATGAGT 59.871 43.478 0.00 0.00 0.00 3.41
2764 2944 4.389374 ACAGTGTTGTCCTTTTCGATCAT 58.611 39.130 0.00 0.00 29.46 2.45
3184 3380 1.067142 CAGTAGCTAACAAGGGCGTCA 60.067 52.381 0.00 0.00 0.00 4.35
3340 3658 2.035442 GCTTGTGAAGGCTCGACCC 61.035 63.158 0.00 0.00 40.58 4.46
3361 3679 1.000618 TCTCCATCGATGCTGCAGATC 59.999 52.381 20.43 15.81 0.00 2.75
3471 3789 5.463286 CATAGCAGCATCTGACAAAAACAA 58.537 37.500 0.00 0.00 32.44 2.83
3604 3924 5.835113 ATTGCAGTAAGTGTGAGTTTTGT 57.165 34.783 0.00 0.00 0.00 2.83
3980 6177 9.507329 AGCACTGATATTATTGTCGGATAAAAT 57.493 29.630 0.00 0.00 0.00 1.82
4303 6530 8.450578 TGATTGTTTGTGTGAGATTAGTCTTT 57.549 30.769 0.00 0.00 33.97 2.52
4416 6682 7.365117 CCTGTAGGTTTTCTATCATCTCCACTT 60.365 40.741 0.00 0.00 0.00 3.16
4487 6753 7.823745 AGTTGGAACAGATTACACATTTTCT 57.176 32.000 0.00 0.00 42.39 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
2 3 2.046314 AGCATTGGTCCCGGTTCG 60.046 61.111 0.00 0.00 0.00 3.95
3 4 1.002624 TGAGCATTGGTCCCGGTTC 60.003 57.895 12.99 0.00 0.00 3.62
4 5 1.303317 GTGAGCATTGGTCCCGGTT 60.303 57.895 12.99 0.00 0.00 4.44
5 6 1.852157 ATGTGAGCATTGGTCCCGGT 61.852 55.000 12.99 0.00 29.54 5.28
12 13 1.942657 CGGGACTAATGTGAGCATTGG 59.057 52.381 3.39 3.10 44.32 3.16
13 14 1.942657 CCGGGACTAATGTGAGCATTG 59.057 52.381 0.00 0.00 44.32 2.82
14 15 1.559682 ACCGGGACTAATGTGAGCATT 59.440 47.619 6.32 0.00 46.14 3.56
15 16 1.204146 ACCGGGACTAATGTGAGCAT 58.796 50.000 6.32 0.00 36.80 3.79
16 17 0.981183 AACCGGGACTAATGTGAGCA 59.019 50.000 6.32 0.00 0.00 4.26
17 18 1.653151 GAACCGGGACTAATGTGAGC 58.347 55.000 6.32 0.00 0.00 4.26
18 19 1.203994 ACGAACCGGGACTAATGTGAG 59.796 52.381 6.32 0.00 0.00 3.51
19 20 1.067425 CACGAACCGGGACTAATGTGA 60.067 52.381 6.32 0.00 28.17 3.58
20 21 1.067425 TCACGAACCGGGACTAATGTG 60.067 52.381 6.32 4.66 32.99 3.21
21 22 1.259609 TCACGAACCGGGACTAATGT 58.740 50.000 6.32 0.00 32.99 2.71
28 29 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
29 30 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
33 34 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
34 35 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
35 36 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
36 37 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
37 38 2.028385 ACATTAGTCCCGGTTCAGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
38 39 2.028476 CACATTAGTCCCGGTTCAGTCA 60.028 50.000 0.00 0.00 0.00 3.41
39 40 2.232941 TCACATTAGTCCCGGTTCAGTC 59.767 50.000 0.00 0.00 0.00 3.51
40 41 2.253610 TCACATTAGTCCCGGTTCAGT 58.746 47.619 0.00 0.00 0.00 3.41
41 42 3.328382 TTCACATTAGTCCCGGTTCAG 57.672 47.619 0.00 0.00 0.00 3.02
42 43 3.992943 ATTCACATTAGTCCCGGTTCA 57.007 42.857 0.00 0.00 0.00 3.18
43 44 6.017357 GGAAATATTCACATTAGTCCCGGTTC 60.017 42.308 0.00 0.00 0.00 3.62
44 45 5.826208 GGAAATATTCACATTAGTCCCGGTT 59.174 40.000 0.00 0.00 0.00 4.44
45 46 5.374071 GGAAATATTCACATTAGTCCCGGT 58.626 41.667 0.00 0.00 0.00 5.28
46 47 4.760204 GGGAAATATTCACATTAGTCCCGG 59.240 45.833 0.00 0.00 31.89 5.73
47 48 4.760204 GGGGAAATATTCACATTAGTCCCG 59.240 45.833 10.20 0.00 33.74 5.14
48 49 4.760204 CGGGGAAATATTCACATTAGTCCC 59.240 45.833 8.52 8.52 33.74 4.46
49 50 5.238650 CACGGGGAAATATTCACATTAGTCC 59.761 44.000 0.00 0.00 33.74 3.85
50 51 6.018180 GTCACGGGGAAATATTCACATTAGTC 60.018 42.308 0.00 0.00 33.74 2.59
51 52 5.820947 GTCACGGGGAAATATTCACATTAGT 59.179 40.000 0.00 0.00 33.74 2.24
52 53 5.238650 GGTCACGGGGAAATATTCACATTAG 59.761 44.000 0.00 0.00 33.74 1.73
53 54 5.127491 GGTCACGGGGAAATATTCACATTA 58.873 41.667 0.00 0.00 33.74 1.90
54 55 3.951680 GGTCACGGGGAAATATTCACATT 59.048 43.478 0.00 0.00 33.74 2.71
55 56 3.053991 TGGTCACGGGGAAATATTCACAT 60.054 43.478 0.00 0.00 33.74 3.21
56 57 2.306219 TGGTCACGGGGAAATATTCACA 59.694 45.455 0.00 0.00 33.74 3.58
57 58 2.993937 TGGTCACGGGGAAATATTCAC 58.006 47.619 0.00 0.00 0.00 3.18
58 59 3.722908 TTGGTCACGGGGAAATATTCA 57.277 42.857 0.00 0.00 0.00 2.57
59 60 3.181490 GCTTTGGTCACGGGGAAATATTC 60.181 47.826 0.00 0.00 0.00 1.75
60 61 2.758423 GCTTTGGTCACGGGGAAATATT 59.242 45.455 0.00 0.00 0.00 1.28
61 62 2.375146 GCTTTGGTCACGGGGAAATAT 58.625 47.619 0.00 0.00 0.00 1.28
62 63 1.614850 GGCTTTGGTCACGGGGAAATA 60.615 52.381 0.00 0.00 0.00 1.40
63 64 0.898326 GGCTTTGGTCACGGGGAAAT 60.898 55.000 0.00 0.00 0.00 2.17
64 65 1.529713 GGCTTTGGTCACGGGGAAA 60.530 57.895 0.00 0.00 0.00 3.13
65 66 2.114411 GGCTTTGGTCACGGGGAA 59.886 61.111 0.00 0.00 0.00 3.97
66 67 3.961414 GGGCTTTGGTCACGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
67 68 3.966543 AGGGCTTTGGTCACGGGG 61.967 66.667 0.00 0.00 0.00 5.73
68 69 2.672996 CAGGGCTTTGGTCACGGG 60.673 66.667 0.00 0.00 0.00 5.28
69 70 1.106944 AAACAGGGCTTTGGTCACGG 61.107 55.000 0.00 0.00 0.00 4.94
70 71 0.744281 AAAACAGGGCTTTGGTCACG 59.256 50.000 0.00 0.00 0.00 4.35
71 72 2.031870 AGAAAACAGGGCTTTGGTCAC 58.968 47.619 0.00 0.00 0.00 3.67
72 73 2.452600 AGAAAACAGGGCTTTGGTCA 57.547 45.000 0.00 0.00 0.00 4.02
73 74 3.487372 AGTAGAAAACAGGGCTTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
74 75 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
75 76 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
76 77 5.305585 TCACTAGTAGAAAACAGGGCTTTG 58.694 41.667 3.59 0.00 0.00 2.77
77 78 5.552178 CTCACTAGTAGAAAACAGGGCTTT 58.448 41.667 3.59 0.00 0.00 3.51
78 79 4.563786 GCTCACTAGTAGAAAACAGGGCTT 60.564 45.833 3.59 0.00 0.00 4.35
79 80 3.055747 GCTCACTAGTAGAAAACAGGGCT 60.056 47.826 3.59 0.00 0.00 5.19
80 81 3.263261 GCTCACTAGTAGAAAACAGGGC 58.737 50.000 3.59 0.00 0.00 5.19
81 82 4.220821 TCTGCTCACTAGTAGAAAACAGGG 59.779 45.833 3.59 0.00 40.96 4.45
82 83 5.164954 GTCTGCTCACTAGTAGAAAACAGG 58.835 45.833 3.59 0.00 44.75 4.00
83 84 4.854291 CGTCTGCTCACTAGTAGAAAACAG 59.146 45.833 3.59 6.45 44.75 3.16
84 85 4.321008 CCGTCTGCTCACTAGTAGAAAACA 60.321 45.833 3.59 0.00 44.75 2.83
85 86 4.167268 CCGTCTGCTCACTAGTAGAAAAC 58.833 47.826 3.59 0.00 44.75 2.43
86 87 3.367087 GCCGTCTGCTCACTAGTAGAAAA 60.367 47.826 3.59 0.00 44.75 2.29
87 88 2.163815 GCCGTCTGCTCACTAGTAGAAA 59.836 50.000 3.59 0.00 44.75 2.52
88 89 1.743958 GCCGTCTGCTCACTAGTAGAA 59.256 52.381 3.59 0.00 44.75 2.10
89 90 1.339727 TGCCGTCTGCTCACTAGTAGA 60.340 52.381 3.59 0.00 41.56 2.59
90 91 1.095600 TGCCGTCTGCTCACTAGTAG 58.904 55.000 0.00 0.00 42.00 2.57
91 92 1.201647 GTTGCCGTCTGCTCACTAGTA 59.798 52.381 0.00 0.00 42.00 1.82
92 93 0.038159 GTTGCCGTCTGCTCACTAGT 60.038 55.000 0.00 0.00 42.00 2.57
93 94 0.737715 GGTTGCCGTCTGCTCACTAG 60.738 60.000 0.00 0.00 42.00 2.57
94 95 1.292223 GGTTGCCGTCTGCTCACTA 59.708 57.895 0.00 0.00 42.00 2.74
95 96 2.031163 GGTTGCCGTCTGCTCACT 59.969 61.111 0.00 0.00 42.00 3.41
96 97 3.414700 CGGTTGCCGTCTGCTCAC 61.415 66.667 0.00 0.00 42.73 3.51
203 204 3.259876 CAGTGGTAGTGGTTAACCTAGCA 59.740 47.826 24.78 20.57 36.67 3.49
235 238 1.225745 GCGGCAACATCGAACGAAG 60.226 57.895 0.12 0.00 0.00 3.79
399 402 2.229675 TCAATCTCGCGAGCATTGAT 57.770 45.000 34.57 22.99 33.88 2.57
466 469 0.321671 AGAACATCACACGACCCCAG 59.678 55.000 0.00 0.00 0.00 4.45
493 497 3.627577 CGTATACGTACAGTACCCTGGTT 59.372 47.826 17.16 0.00 38.29 3.67
637 642 2.124983 CGCCATGTCCACCTGGAG 60.125 66.667 0.00 0.00 46.49 3.86
638 643 4.408821 GCGCCATGTCCACCTGGA 62.409 66.667 0.00 0.00 43.08 3.86
653 658 2.182614 AATTCGAAAGGTGCACCGCG 62.183 55.000 30.14 30.14 42.08 6.46
654 659 0.039527 AAATTCGAAAGGTGCACCGC 60.040 50.000 29.68 20.99 42.08 5.68
655 660 1.401018 GGAAATTCGAAAGGTGCACCG 60.401 52.381 29.68 17.87 42.08 4.94
656 661 1.401018 CGGAAATTCGAAAGGTGCACC 60.401 52.381 29.22 29.22 0.00 5.01
657 662 1.533731 TCGGAAATTCGAAAGGTGCAC 59.466 47.619 8.80 8.80 36.12 4.57
658 663 1.885560 TCGGAAATTCGAAAGGTGCA 58.114 45.000 0.00 0.00 36.12 4.57
659 664 2.981400 TTCGGAAATTCGAAAGGTGC 57.019 45.000 0.00 0.00 44.70 5.01
665 670 5.038033 CCAAAAAGTGTTCGGAAATTCGAA 58.962 37.500 0.00 0.00 45.34 3.71
666 671 4.335874 TCCAAAAAGTGTTCGGAAATTCGA 59.664 37.500 0.00 0.00 37.38 3.71
667 672 4.602995 TCCAAAAAGTGTTCGGAAATTCG 58.397 39.130 0.00 0.00 0.00 3.34
668 673 6.699642 TGAATCCAAAAAGTGTTCGGAAATTC 59.300 34.615 0.00 0.00 0.00 2.17
669 674 6.578023 TGAATCCAAAAAGTGTTCGGAAATT 58.422 32.000 0.00 0.00 0.00 1.82
670 675 6.155475 TGAATCCAAAAAGTGTTCGGAAAT 57.845 33.333 0.00 0.00 0.00 2.17
671 676 5.584253 TGAATCCAAAAAGTGTTCGGAAA 57.416 34.783 0.00 0.00 0.00 3.13
672 677 5.782893 ATGAATCCAAAAAGTGTTCGGAA 57.217 34.783 0.00 0.00 0.00 4.30
673 678 6.885952 TTATGAATCCAAAAAGTGTTCGGA 57.114 33.333 0.00 0.00 0.00 4.55
674 679 6.920758 TGTTTATGAATCCAAAAAGTGTTCGG 59.079 34.615 0.00 0.00 0.00 4.30
675 680 7.922505 TGTTTATGAATCCAAAAAGTGTTCG 57.077 32.000 0.00 0.00 0.00 3.95
690 695 9.502145 GCGTGAATTGAAGATAATGTTTATGAA 57.498 29.630 0.00 0.00 0.00 2.57
691 696 8.128582 GGCGTGAATTGAAGATAATGTTTATGA 58.871 33.333 0.00 0.00 0.00 2.15
692 697 7.379529 GGGCGTGAATTGAAGATAATGTTTATG 59.620 37.037 0.00 0.00 0.00 1.90
693 698 7.425606 GGGCGTGAATTGAAGATAATGTTTAT 58.574 34.615 0.00 0.00 0.00 1.40
694 699 6.457663 CGGGCGTGAATTGAAGATAATGTTTA 60.458 38.462 0.00 0.00 0.00 2.01
695 700 5.650543 GGGCGTGAATTGAAGATAATGTTT 58.349 37.500 0.00 0.00 0.00 2.83
696 701 4.201910 CGGGCGTGAATTGAAGATAATGTT 60.202 41.667 0.00 0.00 0.00 2.71
697 702 3.312421 CGGGCGTGAATTGAAGATAATGT 59.688 43.478 0.00 0.00 0.00 2.71
698 703 3.312421 ACGGGCGTGAATTGAAGATAATG 59.688 43.478 0.00 0.00 0.00 1.90
699 704 3.541632 ACGGGCGTGAATTGAAGATAAT 58.458 40.909 0.00 0.00 0.00 1.28
700 705 2.980568 ACGGGCGTGAATTGAAGATAA 58.019 42.857 0.00 0.00 0.00 1.75
701 706 2.684001 ACGGGCGTGAATTGAAGATA 57.316 45.000 0.00 0.00 0.00 1.98
702 707 1.821216 AACGGGCGTGAATTGAAGAT 58.179 45.000 0.00 0.00 0.00 2.40
703 708 2.343101 CTAACGGGCGTGAATTGAAGA 58.657 47.619 0.00 0.00 0.00 2.87
704 709 1.202031 GCTAACGGGCGTGAATTGAAG 60.202 52.381 0.00 0.00 0.00 3.02
705 710 0.800012 GCTAACGGGCGTGAATTGAA 59.200 50.000 0.00 0.00 0.00 2.69
706 711 0.036765 AGCTAACGGGCGTGAATTGA 60.037 50.000 0.00 0.00 37.29 2.57
707 712 0.373716 GAGCTAACGGGCGTGAATTG 59.626 55.000 0.00 0.00 37.29 2.32
708 713 0.249398 AGAGCTAACGGGCGTGAATT 59.751 50.000 0.00 0.00 37.29 2.17
709 714 0.179108 GAGAGCTAACGGGCGTGAAT 60.179 55.000 0.00 0.00 37.29 2.57
710 715 1.214589 GAGAGCTAACGGGCGTGAA 59.785 57.895 0.00 0.00 37.29 3.18
711 716 1.974875 TGAGAGCTAACGGGCGTGA 60.975 57.895 0.00 0.00 37.29 4.35
712 717 1.805945 GTGAGAGCTAACGGGCGTG 60.806 63.158 0.00 0.00 37.29 5.34
713 718 2.572284 GTGAGAGCTAACGGGCGT 59.428 61.111 0.00 0.00 37.29 5.68
714 719 2.579787 CGTGAGAGCTAACGGGCG 60.580 66.667 7.91 0.00 33.88 6.13
715 720 2.886124 GCGTGAGAGCTAACGGGC 60.886 66.667 15.38 1.20 37.89 6.13
716 721 2.579787 CGCGTGAGAGCTAACGGG 60.580 66.667 15.42 15.42 42.61 5.28
717 722 2.152699 CACGCGTGAGAGCTAACGG 61.153 63.158 34.93 1.17 37.89 4.44
718 723 2.152699 CCACGCGTGAGAGCTAACG 61.153 63.158 39.10 15.99 40.35 3.18
719 724 1.805945 CCCACGCGTGAGAGCTAAC 60.806 63.158 39.10 0.00 34.40 2.34
720 725 2.571757 CCCACGCGTGAGAGCTAA 59.428 61.111 39.10 0.00 34.40 3.09
721 726 3.449227 CCCCACGCGTGAGAGCTA 61.449 66.667 39.10 0.00 34.40 3.32
723 728 4.681978 AACCCCACGCGTGAGAGC 62.682 66.667 39.10 0.00 0.00 4.09
724 729 2.432628 GAACCCCACGCGTGAGAG 60.433 66.667 39.10 27.08 0.00 3.20
725 730 4.351938 CGAACCCCACGCGTGAGA 62.352 66.667 39.10 0.00 0.00 3.27
726 731 3.642778 ATCGAACCCCACGCGTGAG 62.643 63.158 39.10 29.84 0.00 3.51
727 732 3.636313 GATCGAACCCCACGCGTGA 62.636 63.158 39.10 18.79 0.00 4.35
728 733 3.186047 GATCGAACCCCACGCGTG 61.186 66.667 31.77 31.77 0.00 5.34
729 734 4.789075 CGATCGAACCCCACGCGT 62.789 66.667 10.26 5.58 0.00 6.01
732 737 3.766691 ACCCGATCGAACCCCACG 61.767 66.667 18.66 0.00 0.00 4.94
733 738 2.125269 CACCCGATCGAACCCCAC 60.125 66.667 18.66 0.00 0.00 4.61
734 739 4.090588 GCACCCGATCGAACCCCA 62.091 66.667 18.66 0.00 0.00 4.96
737 742 4.814294 AGCGCACCCGATCGAACC 62.814 66.667 18.66 0.76 36.29 3.62
738 743 1.908066 AAAAGCGCACCCGATCGAAC 61.908 55.000 18.66 1.51 36.29 3.95
739 744 1.669760 AAAAGCGCACCCGATCGAA 60.670 52.632 18.66 0.00 36.29 3.71
740 745 2.047655 AAAAGCGCACCCGATCGA 60.048 55.556 18.66 0.00 36.29 3.59
741 746 2.098298 CAAAAGCGCACCCGATCG 59.902 61.111 11.47 8.51 36.29 3.69
742 747 2.202479 GCAAAAGCGCACCCGATC 60.202 61.111 11.47 0.00 36.29 3.69
743 748 3.747976 GGCAAAAGCGCACCCGAT 61.748 61.111 11.47 0.00 36.29 4.18
746 751 4.362476 CAGGGCAAAAGCGCACCC 62.362 66.667 11.47 12.31 43.17 4.61
747 752 3.294493 TCAGGGCAAAAGCGCACC 61.294 61.111 11.47 2.11 35.19 5.01
748 753 2.050077 GTCAGGGCAAAAGCGCAC 60.050 61.111 11.47 0.00 34.65 5.34
749 754 3.294493 GGTCAGGGCAAAAGCGCA 61.294 61.111 11.47 0.00 0.00 6.09
750 755 4.404654 CGGTCAGGGCAAAAGCGC 62.405 66.667 0.00 0.00 0.00 5.92
751 756 2.978010 ACGGTCAGGGCAAAAGCG 60.978 61.111 2.95 2.95 39.60 4.68
752 757 2.644992 CACGGTCAGGGCAAAAGC 59.355 61.111 0.00 0.00 0.00 3.51
753 758 0.821711 TTCCACGGTCAGGGCAAAAG 60.822 55.000 0.00 0.00 0.00 2.27
754 759 1.104577 GTTCCACGGTCAGGGCAAAA 61.105 55.000 0.00 0.00 0.00 2.44
755 760 1.527380 GTTCCACGGTCAGGGCAAA 60.527 57.895 0.00 0.00 0.00 3.68
756 761 2.112297 GTTCCACGGTCAGGGCAA 59.888 61.111 0.00 0.00 0.00 4.52
757 762 3.164977 TGTTCCACGGTCAGGGCA 61.165 61.111 0.00 0.00 0.00 5.36
758 763 2.358737 CTGTTCCACGGTCAGGGC 60.359 66.667 0.00 0.00 0.00 5.19
759 764 1.764571 TTCCTGTTCCACGGTCAGGG 61.765 60.000 20.86 0.00 45.97 4.45
760 765 0.320771 CTTCCTGTTCCACGGTCAGG 60.321 60.000 17.57 17.57 46.94 3.86
761 766 0.951040 GCTTCCTGTTCCACGGTCAG 60.951 60.000 0.00 4.79 0.00 3.51
762 767 1.070786 GCTTCCTGTTCCACGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
763 768 0.670854 GAGCTTCCTGTTCCACGGTC 60.671 60.000 0.00 0.00 0.00 4.79
764 769 1.122019 AGAGCTTCCTGTTCCACGGT 61.122 55.000 0.00 0.00 0.00 4.83
765 770 0.390472 GAGAGCTTCCTGTTCCACGG 60.390 60.000 0.00 0.00 0.00 4.94
766 771 0.390472 GGAGAGCTTCCTGTTCCACG 60.390 60.000 7.46 0.00 43.16 4.94
767 772 0.035915 GGGAGAGCTTCCTGTTCCAC 60.036 60.000 12.71 0.00 45.98 4.02
768 773 1.544825 CGGGAGAGCTTCCTGTTCCA 61.545 60.000 12.94 0.00 45.85 3.53
769 774 1.219393 CGGGAGAGCTTCCTGTTCC 59.781 63.158 12.94 3.68 45.85 3.62
770 775 4.921834 CGGGAGAGCTTCCTGTTC 57.078 61.111 12.94 0.00 45.85 3.18
774 779 1.428869 ATAATGCGGGAGAGCTTCCT 58.571 50.000 12.71 0.00 45.98 3.36
775 780 2.147150 GAATAATGCGGGAGAGCTTCC 58.853 52.381 6.43 6.43 46.00 3.46
776 781 2.147150 GGAATAATGCGGGAGAGCTTC 58.853 52.381 0.00 0.00 38.13 3.86
777 782 1.771255 AGGAATAATGCGGGAGAGCTT 59.229 47.619 0.00 0.00 38.13 3.74
778 783 1.428869 AGGAATAATGCGGGAGAGCT 58.571 50.000 0.00 0.00 38.13 4.09
779 784 2.262423 AAGGAATAATGCGGGAGAGC 57.738 50.000 0.00 0.00 37.71 4.09
780 785 2.802816 CGAAAGGAATAATGCGGGAGAG 59.197 50.000 0.00 0.00 0.00 3.20
781 786 2.833794 CGAAAGGAATAATGCGGGAGA 58.166 47.619 0.00 0.00 0.00 3.71
782 787 1.264288 GCGAAAGGAATAATGCGGGAG 59.736 52.381 0.00 0.00 0.00 4.30
783 788 1.305201 GCGAAAGGAATAATGCGGGA 58.695 50.000 0.00 0.00 0.00 5.14
784 789 1.021202 TGCGAAAGGAATAATGCGGG 58.979 50.000 0.00 0.00 0.00 6.13
785 790 2.662791 CGATGCGAAAGGAATAATGCGG 60.663 50.000 0.00 0.00 32.68 5.69
786 791 2.563976 CGATGCGAAAGGAATAATGCG 58.436 47.619 0.00 0.00 32.68 4.73
787 792 2.031682 AGCGATGCGAAAGGAATAATGC 60.032 45.455 0.00 0.00 32.68 3.56
788 793 3.496130 AGAGCGATGCGAAAGGAATAATG 59.504 43.478 0.00 0.00 32.68 1.90
789 794 3.496130 CAGAGCGATGCGAAAGGAATAAT 59.504 43.478 0.00 0.00 32.68 1.28
790 795 2.866156 CAGAGCGATGCGAAAGGAATAA 59.134 45.455 0.00 0.00 32.68 1.40
791 796 2.473816 CAGAGCGATGCGAAAGGAATA 58.526 47.619 0.00 0.00 32.68 1.75
792 797 1.293924 CAGAGCGATGCGAAAGGAAT 58.706 50.000 0.00 0.00 32.68 3.01
793 798 1.361668 GCAGAGCGATGCGAAAGGAA 61.362 55.000 0.30 0.00 36.28 3.36
794 799 1.811266 GCAGAGCGATGCGAAAGGA 60.811 57.895 0.30 0.00 36.28 3.36
890 895 2.124983 CGAGTGCACCCATGGAGG 60.125 66.667 15.22 5.71 37.03 4.30
891 896 1.976132 ATCCGAGTGCACCCATGGAG 61.976 60.000 15.22 6.55 0.00 3.86
892 897 1.561769 AATCCGAGTGCACCCATGGA 61.562 55.000 15.22 15.67 0.00 3.41
893 898 0.680921 AAATCCGAGTGCACCCATGG 60.681 55.000 14.63 4.14 0.00 3.66
896 901 0.321564 CTGAAATCCGAGTGCACCCA 60.322 55.000 14.63 0.00 0.00 4.51
897 902 1.648467 GCTGAAATCCGAGTGCACCC 61.648 60.000 14.63 0.00 0.00 4.61
942 950 6.354938 TCCGTATAGAAAGAGTAGAGCTCAA 58.645 40.000 17.77 0.00 46.47 3.02
955 963 2.360165 GCCTTCCGTCTCCGTATAGAAA 59.640 50.000 0.00 0.00 0.00 2.52
956 964 1.952296 GCCTTCCGTCTCCGTATAGAA 59.048 52.381 0.00 0.00 0.00 2.10
959 967 0.825010 GGGCCTTCCGTCTCCGTATA 60.825 60.000 0.84 0.00 0.00 1.47
961 969 2.757099 GGGCCTTCCGTCTCCGTA 60.757 66.667 0.84 0.00 0.00 4.02
981 990 0.678950 TATATGTAGGCTGCGCTGCA 59.321 50.000 35.16 18.94 36.92 4.41
982 991 2.015736 ATATATGTAGGCTGCGCTGC 57.984 50.000 28.81 28.81 0.00 5.25
1005 1014 1.816183 CGGTTGTGGGGTGTGTGTATT 60.816 52.381 0.00 0.00 0.00 1.89
1006 1015 0.250553 CGGTTGTGGGGTGTGTGTAT 60.251 55.000 0.00 0.00 0.00 2.29
1007 1016 1.146485 CGGTTGTGGGGTGTGTGTA 59.854 57.895 0.00 0.00 0.00 2.90
1008 1017 2.124487 CGGTTGTGGGGTGTGTGT 60.124 61.111 0.00 0.00 0.00 3.72
1009 1018 2.124487 ACGGTTGTGGGGTGTGTG 60.124 61.111 0.00 0.00 0.00 3.82
1010 1019 2.124487 CACGGTTGTGGGGTGTGT 60.124 61.111 0.00 0.00 42.59 3.72
1025 1034 2.029623 TCGATTCTACCTACCTGCCAC 58.970 52.381 0.00 0.00 0.00 5.01
1026 1035 2.447408 TCGATTCTACCTACCTGCCA 57.553 50.000 0.00 0.00 0.00 4.92
1027 1036 3.612004 CGATTCGATTCTACCTACCTGCC 60.612 52.174 0.00 0.00 0.00 4.85
1028 1037 3.252701 TCGATTCGATTCTACCTACCTGC 59.747 47.826 4.29 0.00 0.00 4.85
1029 1038 4.614078 GCTCGATTCGATTCTACCTACCTG 60.614 50.000 9.54 0.00 34.61 4.00
1030 1039 3.502979 GCTCGATTCGATTCTACCTACCT 59.497 47.826 9.54 0.00 34.61 3.08
1031 1040 3.366171 GGCTCGATTCGATTCTACCTACC 60.366 52.174 9.54 0.00 34.61 3.18
1032 1041 3.502979 AGGCTCGATTCGATTCTACCTAC 59.497 47.826 9.54 0.00 34.61 3.18
1035 1044 3.053455 CAAGGCTCGATTCGATTCTACC 58.947 50.000 9.54 6.66 34.61 3.18
1036 1045 3.053455 CCAAGGCTCGATTCGATTCTAC 58.947 50.000 9.54 0.00 34.61 2.59
1037 1046 2.956333 TCCAAGGCTCGATTCGATTCTA 59.044 45.455 9.54 0.00 34.61 2.10
1038 1047 1.757118 TCCAAGGCTCGATTCGATTCT 59.243 47.619 9.54 7.29 34.61 2.40
1039 1048 2.225068 TCCAAGGCTCGATTCGATTC 57.775 50.000 9.54 5.08 34.61 2.52
1040 1049 2.280628 GTTCCAAGGCTCGATTCGATT 58.719 47.619 9.54 0.00 34.61 3.34
1085 1094 3.471399 GCGGAGGCTACAACGAAC 58.529 61.111 0.00 0.00 35.83 3.95
1148 1157 0.677098 ACGAGCGCTGGAAGTAGAGA 60.677 55.000 26.95 0.00 35.30 3.10
1203 1212 0.460311 GTGTAGATGTACCGGCTGCT 59.540 55.000 0.00 0.00 0.00 4.24
1470 1479 2.898738 CTCCAGGATGCACGCTCT 59.101 61.111 0.00 0.00 31.97 4.09
1476 1485 1.332889 ATGTCGAGCTCCAGGATGCA 61.333 55.000 8.47 0.00 31.97 3.96
1651 1685 6.652481 GCTAATGCTAGCTTGAGGATATTTGA 59.348 38.462 17.23 0.00 46.12 2.69
1756 1802 1.228124 CAACCTTCTGGAACCGGCA 60.228 57.895 0.00 0.00 37.04 5.69
1786 1832 2.281484 GGTTCCCTGCACGCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
1900 1958 7.337480 TGAGTTACGAACCAGTAATATAGCA 57.663 36.000 0.00 0.00 38.63 3.49
2356 2524 2.143876 TCATCCTGACCGATGACTCA 57.856 50.000 0.00 0.00 42.89 3.41
2764 2944 0.253160 AGGGGTCTGCCTTATCCACA 60.253 55.000 0.00 0.00 34.45 4.17
3184 3380 4.923871 CGCGGCATCAGTTATAAATAGAGT 59.076 41.667 0.00 0.00 0.00 3.24
3340 3658 0.388294 TCTGCAGCATCGATGGAGAG 59.612 55.000 26.00 10.22 41.07 3.20
3361 3679 1.209747 GTACCTCAGCCCCCTGTTAAG 59.790 57.143 0.00 0.00 40.09 1.85
3535 3853 9.866655 ATCAACCTGGATATATTTGTATGTGTT 57.133 29.630 0.00 0.00 0.00 3.32
3665 3985 5.060662 TGTGACAATGTACTGAGTAGCTC 57.939 43.478 0.00 0.00 0.00 4.09
3790 4111 5.550981 CGCATCATAAATAGCCGATACAAC 58.449 41.667 0.00 0.00 0.00 3.32
3895 4216 3.326006 CAGGCAGGTACCATAGATCACAT 59.674 47.826 15.94 0.00 0.00 3.21
3980 6177 3.362040 CCAAGATTGGCCAAGTCCA 57.638 52.632 24.94 0.00 42.21 4.02
4084 6303 9.206870 CACAATCCAGCATTAACTTAAAACAAT 57.793 29.630 0.00 0.00 0.00 2.71
4303 6530 8.264347 TGTACAAGATCAGGCTTCATAAATACA 58.736 33.333 0.00 0.00 0.00 2.29
4416 6682 1.944024 CAGGCTTGACGTTGTACCAAA 59.056 47.619 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.