Multiple sequence alignment - TraesCS7A01G050000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G050000 chr7A 100.000 4028 0 0 1 4028 23239699 23235672 0.000000e+00 7439
1 TraesCS7A01G050000 chr7A 91.533 685 51 3 2323 3002 7696142 7696824 0.000000e+00 937
2 TraesCS7A01G050000 chr7A 84.483 290 26 5 1799 2069 7683450 7683739 6.640000e-68 268
3 TraesCS7A01G050000 chr7A 91.327 196 16 1 970 1165 7681138 7681332 2.390000e-67 267
4 TraesCS7A01G050000 chr4A 91.363 1482 83 18 866 2323 733627260 733628720 0.000000e+00 1986
5 TraesCS7A01G050000 chr4A 93.905 804 41 3 2323 3118 733628758 733629561 0.000000e+00 1206
6 TraesCS7A01G050000 chr4A 91.753 97 5 1 447 540 733627143 733627239 9.080000e-27 132
7 TraesCS7A01G050000 chr7D 94.633 1118 44 11 1217 2323 6696167 6695055 0.000000e+00 1718
8 TraesCS7A01G050000 chr7D 97.595 873 16 1 2323 3190 6695017 6694145 0.000000e+00 1491
9 TraesCS7A01G050000 chr7D 95.662 853 11 5 352 1197 6697057 6696224 0.000000e+00 1347
10 TraesCS7A01G050000 chr7D 81.285 903 79 34 1437 2323 6722710 6723538 0.000000e+00 649
11 TraesCS7A01G050000 chr7D 98.333 360 6 0 3646 4005 6693661 6693302 2.040000e-177 632
12 TraesCS7A01G050000 chr7D 90.132 456 9 8 3191 3646 6694113 6693694 9.780000e-156 560
13 TraesCS7A01G050000 chr7D 87.193 367 32 5 2685 3051 6743883 6744234 1.740000e-108 403
14 TraesCS7A01G050000 chr7D 90.980 255 13 4 2323 2567 6723582 6723836 6.450000e-88 335
15 TraesCS7A01G050000 chr7D 86.777 242 26 6 951 1189 6722077 6722315 8.580000e-67 265
16 TraesCS7A01G050000 chr7D 91.729 133 11 0 2558 2690 6741856 6741988 6.870000e-43 185
17 TraesCS7A01G050000 chr5B 80.570 1580 211 62 490 2011 439255354 439256895 0.000000e+00 1129
18 TraesCS7A01G050000 chr5B 86.212 718 92 6 2323 3034 439257441 439258157 0.000000e+00 771
19 TraesCS7A01G050000 chr5D 85.929 732 90 7 2361 3080 370027967 370028697 0.000000e+00 769
20 TraesCS7A01G050000 chr5D 84.463 605 73 12 1273 1861 370011626 370012225 9.710000e-161 577
21 TraesCS7A01G050000 chr5D 82.784 668 75 20 513 1165 370010544 370011186 9.780000e-156 560
22 TraesCS7A01G050000 chr5D 76.645 304 40 19 2011 2304 370012399 370012681 5.430000e-29 139
23 TraesCS7A01G050000 chr5A 86.231 719 82 7 2323 3034 472487211 472487919 0.000000e+00 763
24 TraesCS7A01G050000 chr5A 83.310 725 67 30 452 1165 472484929 472485610 1.590000e-173 619
25 TraesCS7A01G050000 chr5A 88.136 118 12 1 2189 2304 472486865 472486982 5.430000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G050000 chr7A 23235672 23239699 4027 True 7439.000000 7439 100.000000 1 4028 1 chr7A.!!$R1 4027
1 TraesCS7A01G050000 chr7A 7696142 7696824 682 False 937.000000 937 91.533000 2323 3002 1 chr7A.!!$F1 679
2 TraesCS7A01G050000 chr7A 7681138 7683739 2601 False 267.500000 268 87.905000 970 2069 2 chr7A.!!$F2 1099
3 TraesCS7A01G050000 chr4A 733627143 733629561 2418 False 1108.000000 1986 92.340333 447 3118 3 chr4A.!!$F1 2671
4 TraesCS7A01G050000 chr7D 6693302 6697057 3755 True 1149.600000 1718 95.271000 352 4005 5 chr7D.!!$R1 3653
5 TraesCS7A01G050000 chr7D 6722077 6723836 1759 False 416.333333 649 86.347333 951 2567 3 chr7D.!!$F1 1616
6 TraesCS7A01G050000 chr7D 6741856 6744234 2378 False 294.000000 403 89.461000 2558 3051 2 chr7D.!!$F2 493
7 TraesCS7A01G050000 chr5B 439255354 439258157 2803 False 950.000000 1129 83.391000 490 3034 2 chr5B.!!$F1 2544
8 TraesCS7A01G050000 chr5D 370027967 370028697 730 False 769.000000 769 85.929000 2361 3080 1 chr5D.!!$F1 719
9 TraesCS7A01G050000 chr5D 370010544 370012681 2137 False 425.333333 577 81.297333 513 2304 3 chr5D.!!$F2 1791
10 TraesCS7A01G050000 chr5A 472484929 472487919 2990 False 507.000000 763 85.892333 452 3034 3 chr5A.!!$F1 2582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.031616 ACCCCTGAGAGTCTGATCCC 60.032 60.0 0.00 0.00 0.00 3.85 F
172 173 0.031716 CCCCTGAGAGTCTGATCCCA 60.032 60.0 0.00 0.00 0.00 4.37 F
236 237 0.034670 CCAGAGGGAGAAGGCAAAGG 60.035 60.0 0.00 0.00 35.59 3.11 F
358 359 0.045469 AGGGAAGAGCAGGGAAGGAT 59.955 55.0 0.00 0.00 0.00 3.24 F
397 398 0.325577 AAATGGGCTGGATCAACCCC 60.326 55.0 12.89 9.88 38.89 4.95 F
854 896 0.336737 GACAAGGAGGAGGAGGAGGA 59.663 60.0 0.00 0.00 0.00 3.71 F
855 897 0.338120 ACAAGGAGGAGGAGGAGGAG 59.662 60.0 0.00 0.00 0.00 3.69 F
856 898 0.398381 CAAGGAGGAGGAGGAGGAGG 60.398 65.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1943 0.040157 CAAACGACACCATGCACCTG 60.040 55.000 0.00 0.0 0.00 4.00 R
2088 4445 1.605710 GCAAGAACAGCAAGCTGAGAA 59.394 47.619 27.17 0.0 46.30 2.87 R
2307 4692 1.258982 CAAGCTCACACGAACTCACAC 59.741 52.381 0.00 0.0 0.00 3.82 R
2316 4873 2.071688 AAGTAGAGCAAGCTCACACG 57.928 50.000 22.68 0.0 44.99 4.49 R
2487 5098 0.324614 CATGGAGCACTACCACACCA 59.675 55.000 0.00 0.0 40.36 4.17 R
2619 5231 1.408702 GGTGCTGCTCCTTTCAAAACA 59.591 47.619 13.24 0.0 0.00 2.83 R
2842 7366 1.529244 GCTTGACCAAGGTGCCTGT 60.529 57.895 11.26 0.0 38.80 4.00 R
3203 7768 7.667557 ACCATCCATTCATCATTCATTCATTC 58.332 34.615 0.00 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.766691 GGGCGCCTCGAGGTTACA 61.767 66.667 31.43 0.00 37.57 2.41
18 19 2.263540 GGCGCCTCGAGGTTACAA 59.736 61.111 31.43 0.00 37.57 2.41
19 20 1.810030 GGCGCCTCGAGGTTACAAG 60.810 63.158 31.43 16.66 37.57 3.16
20 21 1.214589 GCGCCTCGAGGTTACAAGA 59.785 57.895 31.43 0.00 37.57 3.02
21 22 0.802607 GCGCCTCGAGGTTACAAGAG 60.803 60.000 31.43 13.82 37.57 2.85
23 24 3.742983 CCTCGAGGTTACAAGAGGC 57.257 57.895 24.04 0.00 42.99 4.70
24 25 0.175989 CCTCGAGGTTACAAGAGGCC 59.824 60.000 24.04 0.00 42.99 5.19
25 26 1.187087 CTCGAGGTTACAAGAGGCCT 58.813 55.000 3.86 3.86 0.00 5.19
26 27 1.550976 CTCGAGGTTACAAGAGGCCTT 59.449 52.381 6.77 0.00 0.00 4.35
27 28 1.975680 TCGAGGTTACAAGAGGCCTTT 59.024 47.619 6.77 0.00 0.00 3.11
28 29 2.370849 TCGAGGTTACAAGAGGCCTTTT 59.629 45.455 6.77 4.05 0.00 2.27
29 30 3.579586 TCGAGGTTACAAGAGGCCTTTTA 59.420 43.478 6.77 0.00 0.00 1.52
30 31 4.224370 TCGAGGTTACAAGAGGCCTTTTAT 59.776 41.667 6.77 0.00 0.00 1.40
31 32 4.941873 CGAGGTTACAAGAGGCCTTTTATT 59.058 41.667 6.77 0.05 0.00 1.40
32 33 5.163754 CGAGGTTACAAGAGGCCTTTTATTG 60.164 44.000 6.77 12.70 0.00 1.90
33 34 4.462834 AGGTTACAAGAGGCCTTTTATTGC 59.537 41.667 6.77 0.00 0.00 3.56
34 35 4.219725 GGTTACAAGAGGCCTTTTATTGCA 59.780 41.667 6.77 0.00 0.00 4.08
35 36 3.942130 ACAAGAGGCCTTTTATTGCAC 57.058 42.857 6.77 0.00 0.00 4.57
36 37 2.228822 ACAAGAGGCCTTTTATTGCACG 59.771 45.455 6.77 0.00 0.00 5.34
37 38 2.200373 AGAGGCCTTTTATTGCACGT 57.800 45.000 6.77 0.00 0.00 4.49
38 39 2.514803 AGAGGCCTTTTATTGCACGTT 58.485 42.857 6.77 0.00 0.00 3.99
39 40 2.890945 AGAGGCCTTTTATTGCACGTTT 59.109 40.909 6.77 0.00 0.00 3.60
40 41 3.057526 AGAGGCCTTTTATTGCACGTTTC 60.058 43.478 6.77 0.00 0.00 2.78
41 42 1.982913 GGCCTTTTATTGCACGTTTCG 59.017 47.619 0.00 0.00 0.00 3.46
42 43 1.385409 GCCTTTTATTGCACGTTTCGC 59.615 47.619 0.00 0.00 0.00 4.70
43 44 1.982913 CCTTTTATTGCACGTTTCGCC 59.017 47.619 0.00 0.00 0.00 5.54
44 45 2.351350 CCTTTTATTGCACGTTTCGCCT 60.351 45.455 0.00 0.00 0.00 5.52
45 46 3.120130 CCTTTTATTGCACGTTTCGCCTA 60.120 43.478 0.00 0.00 0.00 3.93
46 47 3.733024 TTTATTGCACGTTTCGCCTAG 57.267 42.857 0.00 0.00 0.00 3.02
47 48 2.373540 TATTGCACGTTTCGCCTAGT 57.626 45.000 0.00 0.00 0.00 2.57
48 49 2.373540 ATTGCACGTTTCGCCTAGTA 57.626 45.000 0.00 0.00 0.00 1.82
49 50 1.705256 TTGCACGTTTCGCCTAGTAG 58.295 50.000 0.00 0.00 0.00 2.57
50 51 0.599558 TGCACGTTTCGCCTAGTAGT 59.400 50.000 0.00 0.00 0.00 2.73
51 52 1.000060 TGCACGTTTCGCCTAGTAGTT 60.000 47.619 0.00 0.00 0.00 2.24
52 53 2.064014 GCACGTTTCGCCTAGTAGTTT 58.936 47.619 0.00 0.00 0.00 2.66
53 54 2.091744 GCACGTTTCGCCTAGTAGTTTC 59.908 50.000 0.00 0.00 0.00 2.78
54 55 2.665052 CACGTTTCGCCTAGTAGTTTCC 59.335 50.000 0.00 0.00 0.00 3.13
55 56 1.916000 CGTTTCGCCTAGTAGTTTCCG 59.084 52.381 0.00 0.00 0.00 4.30
56 57 2.414559 CGTTTCGCCTAGTAGTTTCCGA 60.415 50.000 0.00 0.00 0.00 4.55
57 58 3.578688 GTTTCGCCTAGTAGTTTCCGAA 58.421 45.455 0.00 2.89 33.55 4.30
58 59 2.927553 TCGCCTAGTAGTTTCCGAAC 57.072 50.000 0.00 0.00 35.97 3.95
59 60 1.474077 TCGCCTAGTAGTTTCCGAACC 59.526 52.381 0.00 0.00 36.39 3.62
60 61 1.475682 CGCCTAGTAGTTTCCGAACCT 59.524 52.381 0.00 0.00 36.39 3.50
61 62 2.479219 CGCCTAGTAGTTTCCGAACCTC 60.479 54.545 0.00 0.00 36.39 3.85
62 63 2.159128 GCCTAGTAGTTTCCGAACCTCC 60.159 54.545 0.00 0.00 36.39 4.30
63 64 3.094572 CCTAGTAGTTTCCGAACCTCCA 58.905 50.000 0.00 0.00 36.39 3.86
64 65 3.705072 CCTAGTAGTTTCCGAACCTCCAT 59.295 47.826 0.00 0.00 36.39 3.41
65 66 4.891756 CCTAGTAGTTTCCGAACCTCCATA 59.108 45.833 0.00 0.00 36.39 2.74
66 67 5.539193 CCTAGTAGTTTCCGAACCTCCATAT 59.461 44.000 0.00 0.00 36.39 1.78
67 68 5.952347 AGTAGTTTCCGAACCTCCATATT 57.048 39.130 0.00 0.00 36.39 1.28
68 69 6.309389 AGTAGTTTCCGAACCTCCATATTT 57.691 37.500 0.00 0.00 36.39 1.40
69 70 6.718294 AGTAGTTTCCGAACCTCCATATTTT 58.282 36.000 0.00 0.00 36.39 1.82
70 71 7.173032 AGTAGTTTCCGAACCTCCATATTTTT 58.827 34.615 0.00 0.00 36.39 1.94
97 98 9.955208 TTTCTAAATTTTTCGGAGTTAAGGTTC 57.045 29.630 0.00 0.00 0.00 3.62
98 99 8.913487 TCTAAATTTTTCGGAGTTAAGGTTCT 57.087 30.769 0.00 0.00 0.00 3.01
99 100 8.996271 TCTAAATTTTTCGGAGTTAAGGTTCTC 58.004 33.333 0.00 0.00 0.00 2.87
100 101 7.818997 AAATTTTTCGGAGTTAAGGTTCTCT 57.181 32.000 0.00 0.00 0.00 3.10
101 102 8.913487 AAATTTTTCGGAGTTAAGGTTCTCTA 57.087 30.769 0.00 0.00 0.00 2.43
102 103 8.549338 AATTTTTCGGAGTTAAGGTTCTCTAG 57.451 34.615 0.00 0.00 0.00 2.43
103 104 5.656213 TTTCGGAGTTAAGGTTCTCTAGG 57.344 43.478 0.00 0.00 0.00 3.02
104 105 4.581309 TCGGAGTTAAGGTTCTCTAGGA 57.419 45.455 0.00 0.00 0.00 2.94
105 106 4.927049 TCGGAGTTAAGGTTCTCTAGGAA 58.073 43.478 0.00 0.00 0.00 3.36
106 107 5.516984 TCGGAGTTAAGGTTCTCTAGGAAT 58.483 41.667 0.00 0.00 36.24 3.01
107 108 6.666678 TCGGAGTTAAGGTTCTCTAGGAATA 58.333 40.000 0.00 0.00 36.24 1.75
108 109 7.296098 TCGGAGTTAAGGTTCTCTAGGAATAT 58.704 38.462 0.00 0.00 36.24 1.28
109 110 7.783596 TCGGAGTTAAGGTTCTCTAGGAATATT 59.216 37.037 0.00 0.00 36.24 1.28
110 111 9.075678 CGGAGTTAAGGTTCTCTAGGAATATTA 57.924 37.037 0.00 0.00 36.24 0.98
127 128 9.838339 AGGAATATTAAAAATGATGACGAGACT 57.162 29.630 0.00 0.00 0.00 3.24
132 133 8.954950 ATTAAAAATGATGACGAGACTCAGAT 57.045 30.769 2.82 0.00 0.00 2.90
133 134 8.777865 TTAAAAATGATGACGAGACTCAGATT 57.222 30.769 2.82 0.00 0.00 2.40
134 135 7.678947 AAAAATGATGACGAGACTCAGATTT 57.321 32.000 2.82 0.00 0.00 2.17
135 136 6.900568 AAATGATGACGAGACTCAGATTTC 57.099 37.500 2.82 0.00 0.00 2.17
136 137 5.588958 ATGATGACGAGACTCAGATTTCA 57.411 39.130 2.82 0.00 0.00 2.69
137 138 5.391312 TGATGACGAGACTCAGATTTCAA 57.609 39.130 2.82 0.00 0.00 2.69
138 139 5.164233 TGATGACGAGACTCAGATTTCAAC 58.836 41.667 2.82 0.00 0.00 3.18
139 140 3.565516 TGACGAGACTCAGATTTCAACG 58.434 45.455 2.82 0.00 0.00 4.10
140 141 3.252458 TGACGAGACTCAGATTTCAACGA 59.748 43.478 2.82 0.00 0.00 3.85
141 142 3.827625 ACGAGACTCAGATTTCAACGAG 58.172 45.455 2.82 0.00 0.00 4.18
142 143 2.596419 CGAGACTCAGATTTCAACGAGC 59.404 50.000 2.82 0.00 0.00 5.03
143 144 2.926838 GAGACTCAGATTTCAACGAGCC 59.073 50.000 0.00 0.00 0.00 4.70
144 145 2.300152 AGACTCAGATTTCAACGAGCCA 59.700 45.455 0.00 0.00 0.00 4.75
145 146 2.670414 GACTCAGATTTCAACGAGCCAG 59.330 50.000 0.00 0.00 0.00 4.85
146 147 2.300152 ACTCAGATTTCAACGAGCCAGA 59.700 45.455 0.00 0.00 0.00 3.86
147 148 3.244215 ACTCAGATTTCAACGAGCCAGAA 60.244 43.478 0.00 0.00 0.00 3.02
148 149 3.738982 TCAGATTTCAACGAGCCAGAAA 58.261 40.909 0.00 0.00 35.92 2.52
149 150 4.133820 TCAGATTTCAACGAGCCAGAAAA 58.866 39.130 0.00 0.00 35.20 2.29
150 151 4.024048 TCAGATTTCAACGAGCCAGAAAAC 60.024 41.667 0.00 0.00 35.20 2.43
151 152 3.882888 AGATTTCAACGAGCCAGAAAACA 59.117 39.130 0.00 0.00 35.20 2.83
152 153 4.338118 AGATTTCAACGAGCCAGAAAACAA 59.662 37.500 0.00 0.00 35.20 2.83
153 154 3.414549 TTCAACGAGCCAGAAAACAAC 57.585 42.857 0.00 0.00 0.00 3.32
154 155 1.673920 TCAACGAGCCAGAAAACAACC 59.326 47.619 0.00 0.00 0.00 3.77
155 156 1.029681 AACGAGCCAGAAAACAACCC 58.970 50.000 0.00 0.00 0.00 4.11
156 157 0.822121 ACGAGCCAGAAAACAACCCC 60.822 55.000 0.00 0.00 0.00 4.95
157 158 0.537371 CGAGCCAGAAAACAACCCCT 60.537 55.000 0.00 0.00 0.00 4.79
158 159 0.961753 GAGCCAGAAAACAACCCCTG 59.038 55.000 0.00 0.00 0.00 4.45
159 160 0.555769 AGCCAGAAAACAACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
160 161 0.961753 GCCAGAAAACAACCCCTGAG 59.038 55.000 0.00 0.00 0.00 3.35
161 162 1.478654 GCCAGAAAACAACCCCTGAGA 60.479 52.381 0.00 0.00 0.00 3.27
162 163 2.508526 CCAGAAAACAACCCCTGAGAG 58.491 52.381 0.00 0.00 0.00 3.20
163 164 2.158608 CCAGAAAACAACCCCTGAGAGT 60.159 50.000 0.00 0.00 0.00 3.24
164 165 3.142174 CAGAAAACAACCCCTGAGAGTC 58.858 50.000 0.00 0.00 0.00 3.36
165 166 3.049344 AGAAAACAACCCCTGAGAGTCT 58.951 45.455 0.00 0.00 0.00 3.24
166 167 2.938956 AAACAACCCCTGAGAGTCTG 57.061 50.000 0.00 0.00 0.00 3.51
167 168 2.103153 AACAACCCCTGAGAGTCTGA 57.897 50.000 0.00 0.00 0.00 3.27
168 169 2.334006 ACAACCCCTGAGAGTCTGAT 57.666 50.000 0.00 0.00 0.00 2.90
169 170 2.183679 ACAACCCCTGAGAGTCTGATC 58.816 52.381 0.00 0.00 0.00 2.92
170 171 1.484240 CAACCCCTGAGAGTCTGATCC 59.516 57.143 0.00 0.00 0.00 3.36
171 172 0.031616 ACCCCTGAGAGTCTGATCCC 60.032 60.000 0.00 0.00 0.00 3.85
172 173 0.031716 CCCCTGAGAGTCTGATCCCA 60.032 60.000 0.00 0.00 0.00 4.37
173 174 1.414245 CCCCTGAGAGTCTGATCCCAT 60.414 57.143 0.00 0.00 0.00 4.00
174 175 2.406559 CCCTGAGAGTCTGATCCCATT 58.593 52.381 0.00 0.00 0.00 3.16
175 176 2.776536 CCCTGAGAGTCTGATCCCATTT 59.223 50.000 0.00 0.00 0.00 2.32
176 177 3.433314 CCCTGAGAGTCTGATCCCATTTG 60.433 52.174 0.00 0.00 0.00 2.32
177 178 3.453717 CCTGAGAGTCTGATCCCATTTGA 59.546 47.826 0.00 0.00 0.00 2.69
178 179 4.443175 CCTGAGAGTCTGATCCCATTTGAG 60.443 50.000 0.00 0.00 0.00 3.02
179 180 3.453717 TGAGAGTCTGATCCCATTTGAGG 59.546 47.826 0.00 0.00 0.00 3.86
187 188 4.995594 CCATTTGAGGGGAGGCTC 57.004 61.111 5.78 5.78 0.00 4.70
188 189 1.228510 CCATTTGAGGGGAGGCTCC 59.771 63.158 25.80 25.80 35.23 4.70
189 190 1.153086 CATTTGAGGGGAGGCTCCG 60.153 63.158 26.54 6.93 37.43 4.63
190 191 2.378634 ATTTGAGGGGAGGCTCCGG 61.379 63.158 26.54 0.00 37.43 5.14
191 192 3.864983 TTTGAGGGGAGGCTCCGGT 62.865 63.158 26.54 16.38 37.43 5.28
192 193 4.779733 TGAGGGGAGGCTCCGGTC 62.780 72.222 26.54 23.54 37.43 4.79
198 199 2.444895 GAGGCTCCGGTCCTCCAT 60.445 66.667 25.30 4.91 43.32 3.41
199 200 1.152525 GAGGCTCCGGTCCTCCATA 60.153 63.158 25.30 0.00 43.32 2.74
200 201 1.152440 AGGCTCCGGTCCTCCATAG 60.152 63.158 11.41 0.00 0.00 2.23
201 202 2.737830 GCTCCGGTCCTCCATAGC 59.262 66.667 0.00 0.00 35.16 2.97
202 203 2.873525 GCTCCGGTCCTCCATAGCC 61.874 68.421 0.00 0.00 36.02 3.93
203 204 1.457643 CTCCGGTCCTCCATAGCCA 60.458 63.158 0.00 0.00 0.00 4.75
204 205 0.833834 CTCCGGTCCTCCATAGCCAT 60.834 60.000 0.00 0.00 0.00 4.40
205 206 1.121407 TCCGGTCCTCCATAGCCATG 61.121 60.000 0.00 0.00 0.00 3.66
212 213 2.602438 CCATAGCCATGGCCACCA 59.398 61.111 33.14 16.28 45.29 4.17
213 214 1.076118 CCATAGCCATGGCCACCAA 60.076 57.895 33.14 14.01 45.29 3.67
214 215 0.687098 CCATAGCCATGGCCACCAAA 60.687 55.000 33.14 12.16 45.29 3.28
215 216 1.193323 CATAGCCATGGCCACCAAAA 58.807 50.000 33.14 10.35 43.17 2.44
216 217 1.554160 CATAGCCATGGCCACCAAAAA 59.446 47.619 33.14 8.92 43.17 1.94
217 218 0.972883 TAGCCATGGCCACCAAAAAC 59.027 50.000 33.14 1.44 43.17 2.43
218 219 1.302431 GCCATGGCCACCAAAAACC 60.302 57.895 27.24 0.00 36.95 3.27
219 220 2.049627 GCCATGGCCACCAAAAACCA 62.050 55.000 27.24 0.00 36.95 3.67
220 221 0.035176 CCATGGCCACCAAAAACCAG 59.965 55.000 8.16 0.00 36.95 4.00
221 222 1.047002 CATGGCCACCAAAAACCAGA 58.953 50.000 8.16 0.00 36.95 3.86
222 223 1.001181 CATGGCCACCAAAAACCAGAG 59.999 52.381 8.16 0.00 36.95 3.35
223 224 0.758685 TGGCCACCAAAAACCAGAGG 60.759 55.000 0.00 0.00 0.00 3.69
224 225 1.471829 GGCCACCAAAAACCAGAGGG 61.472 60.000 0.00 0.00 41.29 4.30
225 226 0.469144 GCCACCAAAAACCAGAGGGA 60.469 55.000 0.00 0.00 38.05 4.20
226 227 1.620822 CCACCAAAAACCAGAGGGAG 58.379 55.000 0.00 0.00 38.05 4.30
227 228 1.144913 CCACCAAAAACCAGAGGGAGA 59.855 52.381 0.00 0.00 38.05 3.71
228 229 2.424234 CCACCAAAAACCAGAGGGAGAA 60.424 50.000 0.00 0.00 38.05 2.87
229 230 2.887152 CACCAAAAACCAGAGGGAGAAG 59.113 50.000 0.00 0.00 38.05 2.85
230 231 2.158460 ACCAAAAACCAGAGGGAGAAGG 60.158 50.000 0.00 0.00 38.05 3.46
231 232 1.889170 CAAAAACCAGAGGGAGAAGGC 59.111 52.381 0.00 0.00 38.05 4.35
232 233 1.149101 AAAACCAGAGGGAGAAGGCA 58.851 50.000 0.00 0.00 38.05 4.75
233 234 1.149101 AAACCAGAGGGAGAAGGCAA 58.851 50.000 0.00 0.00 38.05 4.52
234 235 1.149101 AACCAGAGGGAGAAGGCAAA 58.851 50.000 0.00 0.00 38.05 3.68
235 236 0.695347 ACCAGAGGGAGAAGGCAAAG 59.305 55.000 0.00 0.00 38.05 2.77
236 237 0.034670 CCAGAGGGAGAAGGCAAAGG 60.035 60.000 0.00 0.00 35.59 3.11
237 238 0.987294 CAGAGGGAGAAGGCAAAGGA 59.013 55.000 0.00 0.00 0.00 3.36
238 239 1.352352 CAGAGGGAGAAGGCAAAGGAA 59.648 52.381 0.00 0.00 0.00 3.36
239 240 1.632920 AGAGGGAGAAGGCAAAGGAAG 59.367 52.381 0.00 0.00 0.00 3.46
240 241 1.630878 GAGGGAGAAGGCAAAGGAAGA 59.369 52.381 0.00 0.00 0.00 2.87
241 242 2.040412 GAGGGAGAAGGCAAAGGAAGAA 59.960 50.000 0.00 0.00 0.00 2.52
242 243 2.040947 AGGGAGAAGGCAAAGGAAGAAG 59.959 50.000 0.00 0.00 0.00 2.85
243 244 2.224892 GGGAGAAGGCAAAGGAAGAAGT 60.225 50.000 0.00 0.00 0.00 3.01
244 245 3.009143 GGGAGAAGGCAAAGGAAGAAGTA 59.991 47.826 0.00 0.00 0.00 2.24
245 246 4.257731 GGAGAAGGCAAAGGAAGAAGTAG 58.742 47.826 0.00 0.00 0.00 2.57
246 247 4.020128 GGAGAAGGCAAAGGAAGAAGTAGA 60.020 45.833 0.00 0.00 0.00 2.59
247 248 5.513267 GGAGAAGGCAAAGGAAGAAGTAGAA 60.513 44.000 0.00 0.00 0.00 2.10
248 249 5.555966 AGAAGGCAAAGGAAGAAGTAGAAG 58.444 41.667 0.00 0.00 0.00 2.85
249 250 4.293662 AGGCAAAGGAAGAAGTAGAAGG 57.706 45.455 0.00 0.00 0.00 3.46
250 251 3.910627 AGGCAAAGGAAGAAGTAGAAGGA 59.089 43.478 0.00 0.00 0.00 3.36
251 252 4.019771 AGGCAAAGGAAGAAGTAGAAGGAG 60.020 45.833 0.00 0.00 0.00 3.69
252 253 4.020128 GGCAAAGGAAGAAGTAGAAGGAGA 60.020 45.833 0.00 0.00 0.00 3.71
253 254 5.175127 GCAAAGGAAGAAGTAGAAGGAGAG 58.825 45.833 0.00 0.00 0.00 3.20
254 255 5.729510 CAAAGGAAGAAGTAGAAGGAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
255 256 3.989056 AGGAAGAAGTAGAAGGAGAGGG 58.011 50.000 0.00 0.00 0.00 4.30
256 257 2.432874 GGAAGAAGTAGAAGGAGAGGGC 59.567 54.545 0.00 0.00 0.00 5.19
257 258 3.371034 GAAGAAGTAGAAGGAGAGGGCT 58.629 50.000 0.00 0.00 0.00 5.19
258 259 3.026707 AGAAGTAGAAGGAGAGGGCTC 57.973 52.381 0.00 0.00 40.54 4.70
259 260 2.585432 AGAAGTAGAAGGAGAGGGCTCT 59.415 50.000 0.00 0.00 43.78 4.09
271 272 2.041265 GGCTCTCCCTCCTTCCCA 59.959 66.667 0.00 0.00 0.00 4.37
272 273 1.385206 GGCTCTCCCTCCTTCCCAT 60.385 63.158 0.00 0.00 0.00 4.00
273 274 0.990818 GGCTCTCCCTCCTTCCCATT 60.991 60.000 0.00 0.00 0.00 3.16
274 275 0.922626 GCTCTCCCTCCTTCCCATTT 59.077 55.000 0.00 0.00 0.00 2.32
275 276 1.286257 GCTCTCCCTCCTTCCCATTTT 59.714 52.381 0.00 0.00 0.00 1.82
276 277 2.291865 GCTCTCCCTCCTTCCCATTTTT 60.292 50.000 0.00 0.00 0.00 1.94
277 278 3.053619 GCTCTCCCTCCTTCCCATTTTTA 60.054 47.826 0.00 0.00 0.00 1.52
278 279 4.786425 CTCTCCCTCCTTCCCATTTTTAG 58.214 47.826 0.00 0.00 0.00 1.85
279 280 3.053619 TCTCCCTCCTTCCCATTTTTAGC 60.054 47.826 0.00 0.00 0.00 3.09
280 281 2.652348 TCCCTCCTTCCCATTTTTAGCA 59.348 45.455 0.00 0.00 0.00 3.49
281 282 3.026694 CCCTCCTTCCCATTTTTAGCAG 58.973 50.000 0.00 0.00 0.00 4.24
282 283 3.564352 CCCTCCTTCCCATTTTTAGCAGT 60.564 47.826 0.00 0.00 0.00 4.40
283 284 4.325030 CCCTCCTTCCCATTTTTAGCAGTA 60.325 45.833 0.00 0.00 0.00 2.74
284 285 5.261216 CCTCCTTCCCATTTTTAGCAGTAA 58.739 41.667 0.00 0.00 0.00 2.24
285 286 5.358160 CCTCCTTCCCATTTTTAGCAGTAAG 59.642 44.000 0.00 0.00 0.00 2.34
286 287 5.887754 TCCTTCCCATTTTTAGCAGTAAGT 58.112 37.500 0.00 0.00 0.00 2.24
287 288 7.023171 TCCTTCCCATTTTTAGCAGTAAGTA 57.977 36.000 0.00 0.00 0.00 2.24
288 289 7.110155 TCCTTCCCATTTTTAGCAGTAAGTAG 58.890 38.462 0.00 0.00 0.00 2.57
289 290 7.037873 TCCTTCCCATTTTTAGCAGTAAGTAGA 60.038 37.037 0.00 0.00 0.00 2.59
290 291 7.610305 CCTTCCCATTTTTAGCAGTAAGTAGAA 59.390 37.037 0.00 0.00 0.00 2.10
291 292 8.561738 TTCCCATTTTTAGCAGTAAGTAGAAG 57.438 34.615 0.00 0.00 0.00 2.85
292 293 7.686434 TCCCATTTTTAGCAGTAAGTAGAAGT 58.314 34.615 0.00 0.00 0.00 3.01
293 294 8.818860 TCCCATTTTTAGCAGTAAGTAGAAGTA 58.181 33.333 0.00 0.00 0.00 2.24
294 295 9.099454 CCCATTTTTAGCAGTAAGTAGAAGTAG 57.901 37.037 0.00 0.00 0.00 2.57
295 296 9.871238 CCATTTTTAGCAGTAAGTAGAAGTAGA 57.129 33.333 0.00 0.00 0.00 2.59
303 304 9.169592 AGCAGTAAGTAGAAGTAGAAGTAGAAG 57.830 37.037 0.00 0.00 0.00 2.85
304 305 8.949177 GCAGTAAGTAGAAGTAGAAGTAGAAGT 58.051 37.037 0.00 0.00 0.00 3.01
315 316 9.478768 AAGTAGAAGTAGAAGTTGTTTCTTAGC 57.521 33.333 0.00 0.00 43.68 3.09
316 317 8.639761 AGTAGAAGTAGAAGTTGTTTCTTAGCA 58.360 33.333 0.00 0.00 43.68 3.49
317 318 7.954788 AGAAGTAGAAGTTGTTTCTTAGCAG 57.045 36.000 0.00 0.00 43.68 4.24
318 319 7.501844 AGAAGTAGAAGTTGTTTCTTAGCAGT 58.498 34.615 0.00 0.00 43.68 4.40
319 320 8.639761 AGAAGTAGAAGTTGTTTCTTAGCAGTA 58.360 33.333 0.00 0.00 43.68 2.74
320 321 9.257651 GAAGTAGAAGTTGTTTCTTAGCAGTAA 57.742 33.333 0.00 0.00 43.68 2.24
321 322 8.819643 AGTAGAAGTTGTTTCTTAGCAGTAAG 57.180 34.615 0.00 0.00 43.68 2.34
322 323 8.422566 AGTAGAAGTTGTTTCTTAGCAGTAAGT 58.577 33.333 0.00 0.00 43.68 2.24
323 324 9.688592 GTAGAAGTTGTTTCTTAGCAGTAAGTA 57.311 33.333 0.00 0.00 43.68 2.24
324 325 8.819643 AGAAGTTGTTTCTTAGCAGTAAGTAG 57.180 34.615 0.00 0.00 43.68 2.57
325 326 8.639761 AGAAGTTGTTTCTTAGCAGTAAGTAGA 58.360 33.333 0.00 0.00 43.68 2.59
326 327 9.257651 GAAGTTGTTTCTTAGCAGTAAGTAGAA 57.742 33.333 0.00 0.00 37.50 2.10
327 328 8.819643 AGTTGTTTCTTAGCAGTAAGTAGAAG 57.180 34.615 0.00 0.00 37.50 2.85
328 329 8.422566 AGTTGTTTCTTAGCAGTAAGTAGAAGT 58.577 33.333 0.00 0.00 37.50 3.01
329 330 9.043079 GTTGTTTCTTAGCAGTAAGTAGAAGTT 57.957 33.333 0.00 0.00 37.50 2.66
330 331 9.609346 TTGTTTCTTAGCAGTAAGTAGAAGTTT 57.391 29.630 0.00 0.00 37.50 2.66
331 332 9.609346 TGTTTCTTAGCAGTAAGTAGAAGTTTT 57.391 29.630 0.00 0.00 37.50 2.43
358 359 0.045469 AGGGAAGAGCAGGGAAGGAT 59.955 55.000 0.00 0.00 0.00 3.24
389 390 1.410083 GCCACTGATAAATGGGCTGGA 60.410 52.381 0.00 0.00 41.39 3.86
391 392 3.152341 CCACTGATAAATGGGCTGGATC 58.848 50.000 0.00 0.00 31.83 3.36
392 393 3.435457 CCACTGATAAATGGGCTGGATCA 60.435 47.826 0.00 0.00 31.83 2.92
394 395 4.037208 CACTGATAAATGGGCTGGATCAAC 59.963 45.833 0.00 0.00 0.00 3.18
395 396 3.565307 TGATAAATGGGCTGGATCAACC 58.435 45.455 0.00 0.00 39.54 3.77
396 397 2.452600 TAAATGGGCTGGATCAACCC 57.547 50.000 9.44 9.44 39.99 4.11
397 398 0.325577 AAATGGGCTGGATCAACCCC 60.326 55.000 12.89 9.88 38.89 4.95
398 399 2.242408 AATGGGCTGGATCAACCCCC 62.242 60.000 12.89 8.33 38.89 5.40
572 582 5.652452 TCGATCATCTCACACCTTCTTCTTA 59.348 40.000 0.00 0.00 0.00 2.10
842 884 4.323477 CCCAACCCGCGACAAGGA 62.323 66.667 8.23 0.00 0.00 3.36
843 885 2.742372 CCAACCCGCGACAAGGAG 60.742 66.667 8.23 0.00 0.00 3.69
844 886 2.742372 CAACCCGCGACAAGGAGG 60.742 66.667 8.23 0.00 0.00 4.30
845 887 2.920912 AACCCGCGACAAGGAGGA 60.921 61.111 8.23 0.00 0.00 3.71
846 888 2.943978 AACCCGCGACAAGGAGGAG 61.944 63.158 8.23 0.00 0.00 3.69
847 889 4.148825 CCCGCGACAAGGAGGAGG 62.149 72.222 8.23 0.00 0.00 4.30
848 890 3.068691 CCGCGACAAGGAGGAGGA 61.069 66.667 8.23 0.00 0.00 3.71
849 891 2.492090 CGCGACAAGGAGGAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
850 892 2.896443 GCGACAAGGAGGAGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
851 893 1.682684 GCGACAAGGAGGAGGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
852 894 1.671901 GCGACAAGGAGGAGGAGGAG 61.672 65.000 0.00 0.00 0.00 3.69
853 895 1.040339 CGACAAGGAGGAGGAGGAGG 61.040 65.000 0.00 0.00 0.00 4.30
854 896 0.336737 GACAAGGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
855 897 0.338120 ACAAGGAGGAGGAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
856 898 0.398381 CAAGGAGGAGGAGGAGGAGG 60.398 65.000 0.00 0.00 0.00 4.30
857 899 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
926 968 2.197875 CCCCCTACGGAGATCGGT 59.802 66.667 0.00 0.00 44.45 4.69
1018 1075 2.737359 GCGATGACGATGGTGGAGTTAA 60.737 50.000 0.00 0.00 42.66 2.01
1230 1496 4.756642 TGATGAGTGTGGATTTCACTTGAC 59.243 41.667 0.00 0.00 44.68 3.18
1551 2159 3.160679 AGTCCATTCCCTGTTTCCTTG 57.839 47.619 0.00 0.00 0.00 3.61
1623 3770 9.593134 CCTCTTCTCATAAATATGCTGTATACC 57.407 37.037 0.00 0.00 33.76 2.73
1983 4284 5.542616 TTGCAAAAATGGTTTGTGAGTTG 57.457 34.783 0.00 0.00 0.00 3.16
1995 4296 5.050159 GGTTTGTGAGTTGCCATTTTGATTC 60.050 40.000 0.00 0.00 0.00 2.52
2085 4442 5.323581 TCTCAGCTCTCATGATGTAGCTAT 58.676 41.667 20.64 4.61 43.26 2.97
2086 4443 5.415389 TCTCAGCTCTCATGATGTAGCTATC 59.585 44.000 20.64 0.00 43.26 2.08
2087 4444 5.323581 TCAGCTCTCATGATGTAGCTATCT 58.676 41.667 20.64 3.78 43.26 1.98
2088 4445 5.774184 TCAGCTCTCATGATGTAGCTATCTT 59.226 40.000 20.64 3.50 43.26 2.40
2168 4543 6.258354 TCCCTAGTATACACCACTCTTTCAA 58.742 40.000 5.50 0.00 0.00 2.69
2252 4635 8.927721 GTTCAAAACTTGTTGCCTTTTAACTTA 58.072 29.630 0.00 0.00 0.00 2.24
2307 4692 7.072177 TGGTCTGATTAATTGCTTAACTTCG 57.928 36.000 0.00 0.00 29.85 3.79
2316 4873 4.789095 TTGCTTAACTTCGTGTGAGTTC 57.211 40.909 0.00 0.00 0.00 3.01
2487 5098 3.006940 TGGCGACGAAGATTTTAGCAAT 58.993 40.909 0.00 0.00 0.00 3.56
2619 5231 2.363683 GCAGCTAGCCTTGAAGTCAAT 58.636 47.619 12.13 0.00 37.23 2.57
2765 7277 1.889530 AACCTCGTAGCTGTCCCTGC 61.890 60.000 0.00 0.00 0.00 4.85
2797 7312 3.431912 CGACGAAGATGAAATTGGTGTCA 59.568 43.478 0.00 0.00 0.00 3.58
2842 7366 4.686839 GATGACGTCGATGATGAGGATA 57.313 45.455 12.58 0.00 0.00 2.59
3139 7674 1.404035 GGGATGTAATGAACCAACCGC 59.596 52.381 0.00 0.00 0.00 5.68
3190 7725 2.749839 GCCATGCGCCCTGTTGTA 60.750 61.111 4.18 0.00 0.00 2.41
3191 7726 3.051392 GCCATGCGCCCTGTTGTAC 62.051 63.158 4.18 0.00 0.00 2.90
3192 7727 1.673993 CCATGCGCCCTGTTGTACA 60.674 57.895 4.18 0.00 0.00 2.90
3193 7728 1.031571 CCATGCGCCCTGTTGTACAT 61.032 55.000 4.18 0.00 0.00 2.29
3246 7811 6.668323 GGATGGTTCCATGATTTATAACACG 58.332 40.000 9.21 0.00 42.12 4.49
3275 7840 1.279496 ATAGTGGCTCCTCTGTTGCA 58.721 50.000 1.05 0.00 0.00 4.08
3323 7888 5.648960 GGTGGCAAAAATGAATGGATGATTT 59.351 36.000 0.00 0.00 0.00 2.17
3324 7889 6.151480 GGTGGCAAAAATGAATGGATGATTTT 59.849 34.615 0.00 0.00 32.01 1.82
3325 7890 7.024768 GTGGCAAAAATGAATGGATGATTTTG 58.975 34.615 0.00 0.00 39.50 2.44
3327 7892 7.094720 TGGCAAAAATGAATGGATGATTTTGTC 60.095 33.333 6.47 6.47 40.72 3.18
3329 7894 8.173130 GCAAAAATGAATGGATGATTTTGTCTC 58.827 33.333 9.62 0.00 39.01 3.36
3331 7896 9.649167 AAAAATGAATGGATGATTTTGTCTCTC 57.351 29.630 0.00 0.00 31.31 3.20
3332 7897 6.615264 ATGAATGGATGATTTTGTCTCTCG 57.385 37.500 0.00 0.00 0.00 4.04
3333 7898 5.733676 TGAATGGATGATTTTGTCTCTCGA 58.266 37.500 0.00 0.00 0.00 4.04
3334 7899 6.351711 TGAATGGATGATTTTGTCTCTCGAT 58.648 36.000 0.00 0.00 0.00 3.59
3335 7900 6.481313 TGAATGGATGATTTTGTCTCTCGATC 59.519 38.462 0.00 0.00 0.00 3.69
3336 7901 5.604758 TGGATGATTTTGTCTCTCGATCT 57.395 39.130 0.00 0.00 0.00 2.75
3337 7902 5.982356 TGGATGATTTTGTCTCTCGATCTT 58.018 37.500 0.00 0.00 0.00 2.40
3338 7903 7.112452 TGGATGATTTTGTCTCTCGATCTTA 57.888 36.000 0.00 0.00 0.00 2.10
3339 7904 7.730084 TGGATGATTTTGTCTCTCGATCTTAT 58.270 34.615 0.00 0.00 0.00 1.73
3340 7905 8.206867 TGGATGATTTTGTCTCTCGATCTTATT 58.793 33.333 0.00 0.00 0.00 1.40
3341 7906 8.494347 GGATGATTTTGTCTCTCGATCTTATTG 58.506 37.037 0.00 0.00 0.00 1.90
3342 7907 8.954950 ATGATTTTGTCTCTCGATCTTATTGT 57.045 30.769 0.00 0.00 0.00 2.71
3343 7908 8.777865 TGATTTTGTCTCTCGATCTTATTGTT 57.222 30.769 0.00 0.00 0.00 2.83
3344 7909 9.219603 TGATTTTGTCTCTCGATCTTATTGTTT 57.780 29.630 0.00 0.00 0.00 2.83
3346 7911 9.831737 ATTTTGTCTCTCGATCTTATTGTTTTG 57.168 29.630 0.00 0.00 0.00 2.44
3347 7912 6.408858 TGTCTCTCGATCTTATTGTTTTGC 57.591 37.500 0.00 0.00 0.00 3.68
3348 7913 5.351465 TGTCTCTCGATCTTATTGTTTTGCC 59.649 40.000 0.00 0.00 0.00 4.52
3349 7914 4.566759 TCTCTCGATCTTATTGTTTTGCCG 59.433 41.667 0.00 0.00 0.00 5.69
3350 7915 3.063452 TCTCGATCTTATTGTTTTGCCGC 59.937 43.478 0.00 0.00 0.00 6.53
3351 7916 2.101125 CGATCTTATTGTTTTGCCGCG 58.899 47.619 0.00 0.00 0.00 6.46
3352 7917 1.846175 GATCTTATTGTTTTGCCGCGC 59.154 47.619 0.00 0.00 0.00 6.86
3353 7918 0.593618 TCTTATTGTTTTGCCGCGCA 59.406 45.000 8.75 0.00 36.47 6.09
3354 7919 1.201181 TCTTATTGTTTTGCCGCGCAT 59.799 42.857 8.75 0.00 38.76 4.73
3355 7920 2.420372 TCTTATTGTTTTGCCGCGCATA 59.580 40.909 8.75 0.00 38.76 3.14
3356 7921 3.066064 TCTTATTGTTTTGCCGCGCATAT 59.934 39.130 8.75 0.00 38.76 1.78
3357 7922 1.558741 ATTGTTTTGCCGCGCATATG 58.441 45.000 8.75 0.00 38.76 1.78
3358 7923 0.242286 TTGTTTTGCCGCGCATATGT 59.758 45.000 8.75 0.00 38.76 2.29
3359 7924 0.242286 TGTTTTGCCGCGCATATGTT 59.758 45.000 8.75 0.00 38.76 2.71
3360 7925 0.913876 GTTTTGCCGCGCATATGTTC 59.086 50.000 8.75 0.00 38.76 3.18
3435 8000 6.267471 ACTTGTTATTTGAGCCAAGGAAATCA 59.733 34.615 0.00 0.00 38.84 2.57
3520 8085 3.118905 GCATGTAATGGTCTCTCTCCC 57.881 52.381 0.00 0.00 46.86 4.30
3521 8086 2.703007 GCATGTAATGGTCTCTCTCCCT 59.297 50.000 0.00 0.00 46.86 4.20
3522 8087 3.244044 GCATGTAATGGTCTCTCTCCCTC 60.244 52.174 0.00 0.00 46.86 4.30
3618 8183 9.334693 GCATAGCATAGTATTTTACAGCAAATC 57.665 33.333 0.00 0.00 0.00 2.17
3638 8203 7.011295 GCAAATCATTCTCCTCAAACAAACAAA 59.989 33.333 0.00 0.00 0.00 2.83
3704 8302 2.343426 GCCCTCTTCTTTTGGCCGG 61.343 63.158 0.00 0.00 37.94 6.13
3749 8347 2.301902 CTTGATGAAGAGCGCGGCAC 62.302 60.000 8.83 0.00 0.00 5.01
3812 8410 4.315803 AGAACACGGACCAATTTGACTAG 58.684 43.478 0.00 0.00 0.00 2.57
3961 8559 0.179000 CACACAGGCCCTCCATAGAC 59.821 60.000 0.00 0.00 33.74 2.59
4005 8603 2.046285 CACCATCGGAAGGGCCAAC 61.046 63.158 6.18 0.00 35.94 3.77
4006 8604 2.824041 CCATCGGAAGGGCCAACG 60.824 66.667 6.18 7.30 35.94 4.10
4007 8605 2.824041 CATCGGAAGGGCCAACGG 60.824 66.667 6.18 3.67 35.94 4.44
4008 8606 3.327404 ATCGGAAGGGCCAACGGT 61.327 61.111 6.18 0.00 35.94 4.83
4009 8607 3.325201 ATCGGAAGGGCCAACGGTC 62.325 63.158 6.18 0.00 35.94 4.79
4018 8616 2.594303 CCAACGGTCCTGCAGCAA 60.594 61.111 8.66 0.00 0.00 3.91
4019 8617 2.620112 CCAACGGTCCTGCAGCAAG 61.620 63.158 8.66 1.54 0.00 4.01
4020 8618 1.597854 CAACGGTCCTGCAGCAAGA 60.598 57.895 8.66 0.00 0.00 3.02
4021 8619 1.148273 AACGGTCCTGCAGCAAGAA 59.852 52.632 8.66 0.00 0.00 2.52
4022 8620 1.166531 AACGGTCCTGCAGCAAGAAC 61.167 55.000 8.66 1.89 0.00 3.01
4023 8621 2.328099 CGGTCCTGCAGCAAGAACC 61.328 63.158 8.66 9.03 0.00 3.62
4024 8622 1.073897 GGTCCTGCAGCAAGAACCT 59.926 57.895 8.66 0.00 0.00 3.50
4025 8623 0.538287 GGTCCTGCAGCAAGAACCTT 60.538 55.000 8.66 0.00 0.00 3.50
4026 8624 0.877743 GTCCTGCAGCAAGAACCTTC 59.122 55.000 8.66 0.00 0.00 3.46
4027 8625 0.767375 TCCTGCAGCAAGAACCTTCT 59.233 50.000 8.66 0.00 39.74 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.305177 TTGTAACCTCGAGGCGCCC 62.305 63.158 31.56 16.61 39.32 6.13
1 2 1.810030 CTTGTAACCTCGAGGCGCC 60.810 63.158 31.56 21.89 39.32 6.53
2 3 0.802607 CTCTTGTAACCTCGAGGCGC 60.803 60.000 31.56 20.55 39.32 6.53
5 6 0.175989 GGCCTCTTGTAACCTCGAGG 59.824 60.000 30.11 30.11 44.58 4.63
8 9 2.474410 AAAGGCCTCTTGTAACCTCG 57.526 50.000 5.23 0.00 32.75 4.63
9 10 5.393135 GCAATAAAAGGCCTCTTGTAACCTC 60.393 44.000 5.23 0.00 32.75 3.85
10 11 4.462834 GCAATAAAAGGCCTCTTGTAACCT 59.537 41.667 5.23 0.00 32.75 3.50
11 12 4.219725 TGCAATAAAAGGCCTCTTGTAACC 59.780 41.667 5.23 0.00 32.75 2.85
12 13 5.161358 GTGCAATAAAAGGCCTCTTGTAAC 58.839 41.667 5.23 7.45 32.75 2.50
13 14 4.083003 CGTGCAATAAAAGGCCTCTTGTAA 60.083 41.667 5.23 0.00 32.75 2.41
14 15 3.438781 CGTGCAATAAAAGGCCTCTTGTA 59.561 43.478 5.23 4.86 32.75 2.41
15 16 2.228822 CGTGCAATAAAAGGCCTCTTGT 59.771 45.455 5.23 0.00 32.75 3.16
16 17 2.228822 ACGTGCAATAAAAGGCCTCTTG 59.771 45.455 5.23 9.28 32.75 3.02
17 18 2.514803 ACGTGCAATAAAAGGCCTCTT 58.485 42.857 5.23 0.00 34.07 2.85
18 19 2.200373 ACGTGCAATAAAAGGCCTCT 57.800 45.000 5.23 0.00 0.00 3.69
19 20 3.242518 GAAACGTGCAATAAAAGGCCTC 58.757 45.455 5.23 0.00 0.00 4.70
20 21 2.351350 CGAAACGTGCAATAAAAGGCCT 60.351 45.455 0.00 0.00 0.00 5.19
21 22 1.982913 CGAAACGTGCAATAAAAGGCC 59.017 47.619 0.00 0.00 0.00 5.19
22 23 1.385409 GCGAAACGTGCAATAAAAGGC 59.615 47.619 0.00 0.00 0.00 4.35
23 24 1.982913 GGCGAAACGTGCAATAAAAGG 59.017 47.619 0.00 0.00 0.00 3.11
24 25 2.928694 AGGCGAAACGTGCAATAAAAG 58.071 42.857 0.00 0.00 0.00 2.27
25 26 3.499157 ACTAGGCGAAACGTGCAATAAAA 59.501 39.130 0.00 0.00 0.00 1.52
26 27 3.068560 ACTAGGCGAAACGTGCAATAAA 58.931 40.909 0.00 0.00 0.00 1.40
27 28 2.690786 ACTAGGCGAAACGTGCAATAA 58.309 42.857 0.00 0.00 0.00 1.40
28 29 2.373540 ACTAGGCGAAACGTGCAATA 57.626 45.000 0.00 0.00 0.00 1.90
29 30 2.268298 CTACTAGGCGAAACGTGCAAT 58.732 47.619 0.00 0.00 0.00 3.56
30 31 1.000060 ACTACTAGGCGAAACGTGCAA 60.000 47.619 0.00 0.00 0.00 4.08
31 32 0.599558 ACTACTAGGCGAAACGTGCA 59.400 50.000 0.00 0.00 0.00 4.57
32 33 1.706443 AACTACTAGGCGAAACGTGC 58.294 50.000 0.00 0.00 0.00 5.34
33 34 2.665052 GGAAACTACTAGGCGAAACGTG 59.335 50.000 0.00 0.00 0.00 4.49
34 35 2.669391 CGGAAACTACTAGGCGAAACGT 60.669 50.000 0.00 0.00 0.00 3.99
35 36 1.916000 CGGAAACTACTAGGCGAAACG 59.084 52.381 0.00 0.00 0.00 3.60
36 37 3.221964 TCGGAAACTACTAGGCGAAAC 57.778 47.619 0.00 0.00 0.00 2.78
37 38 3.578688 GTTCGGAAACTACTAGGCGAAA 58.421 45.455 0.00 0.00 32.36 3.46
38 39 2.094545 GGTTCGGAAACTACTAGGCGAA 60.095 50.000 0.00 0.00 35.61 4.70
39 40 1.474077 GGTTCGGAAACTACTAGGCGA 59.526 52.381 0.00 0.00 35.61 5.54
40 41 1.475682 AGGTTCGGAAACTACTAGGCG 59.524 52.381 6.49 0.00 35.61 5.52
41 42 2.159128 GGAGGTTCGGAAACTACTAGGC 60.159 54.545 10.85 0.00 35.61 3.93
42 43 3.094572 TGGAGGTTCGGAAACTACTAGG 58.905 50.000 18.44 0.00 35.61 3.02
43 44 6.651975 ATATGGAGGTTCGGAAACTACTAG 57.348 41.667 18.44 0.00 35.61 2.57
44 45 7.427989 AAATATGGAGGTTCGGAAACTACTA 57.572 36.000 18.44 9.07 35.61 1.82
45 46 5.952347 AATATGGAGGTTCGGAAACTACT 57.048 39.130 18.44 7.27 35.61 2.57
46 47 6.997239 AAAATATGGAGGTTCGGAAACTAC 57.003 37.500 11.21 11.21 35.61 2.73
71 72 9.955208 GAACCTTAACTCCGAAAAATTTAGAAA 57.045 29.630 0.00 0.00 0.00 2.52
72 73 9.346005 AGAACCTTAACTCCGAAAAATTTAGAA 57.654 29.630 0.00 0.00 0.00 2.10
73 74 8.913487 AGAACCTTAACTCCGAAAAATTTAGA 57.087 30.769 0.00 0.00 0.00 2.10
74 75 9.000486 AGAGAACCTTAACTCCGAAAAATTTAG 58.000 33.333 0.00 0.00 34.13 1.85
75 76 8.913487 AGAGAACCTTAACTCCGAAAAATTTA 57.087 30.769 0.00 0.00 34.13 1.40
76 77 7.818997 AGAGAACCTTAACTCCGAAAAATTT 57.181 32.000 0.00 0.00 34.13 1.82
77 78 7.606839 CCTAGAGAACCTTAACTCCGAAAAATT 59.393 37.037 0.00 0.00 34.13 1.82
78 79 7.038516 TCCTAGAGAACCTTAACTCCGAAAAAT 60.039 37.037 0.00 0.00 34.13 1.82
79 80 6.268387 TCCTAGAGAACCTTAACTCCGAAAAA 59.732 38.462 0.00 0.00 34.13 1.94
80 81 5.776716 TCCTAGAGAACCTTAACTCCGAAAA 59.223 40.000 0.00 0.00 34.13 2.29
81 82 5.327732 TCCTAGAGAACCTTAACTCCGAAA 58.672 41.667 0.00 0.00 34.13 3.46
82 83 4.927049 TCCTAGAGAACCTTAACTCCGAA 58.073 43.478 0.00 0.00 34.13 4.30
83 84 4.581309 TCCTAGAGAACCTTAACTCCGA 57.419 45.455 0.00 0.00 34.13 4.55
84 85 5.855740 ATTCCTAGAGAACCTTAACTCCG 57.144 43.478 0.00 0.00 37.29 4.63
101 102 9.838339 AGTCTCGTCATCATTTTTAATATTCCT 57.162 29.630 0.00 0.00 0.00 3.36
107 108 8.954950 ATCTGAGTCTCGTCATCATTTTTAAT 57.045 30.769 0.00 0.00 0.00 1.40
108 109 8.777865 AATCTGAGTCTCGTCATCATTTTTAA 57.222 30.769 0.00 0.00 0.00 1.52
109 110 8.777865 AAATCTGAGTCTCGTCATCATTTTTA 57.222 30.769 0.00 0.00 0.00 1.52
110 111 7.388776 TGAAATCTGAGTCTCGTCATCATTTTT 59.611 33.333 0.00 0.00 0.00 1.94
111 112 6.875726 TGAAATCTGAGTCTCGTCATCATTTT 59.124 34.615 0.00 0.00 0.00 1.82
112 113 6.401394 TGAAATCTGAGTCTCGTCATCATTT 58.599 36.000 0.00 0.00 0.00 2.32
113 114 5.970592 TGAAATCTGAGTCTCGTCATCATT 58.029 37.500 0.00 0.00 0.00 2.57
114 115 5.588958 TGAAATCTGAGTCTCGTCATCAT 57.411 39.130 0.00 0.00 0.00 2.45
115 116 5.164233 GTTGAAATCTGAGTCTCGTCATCA 58.836 41.667 0.00 0.00 0.00 3.07
116 117 4.264145 CGTTGAAATCTGAGTCTCGTCATC 59.736 45.833 0.00 0.00 0.00 2.92
117 118 4.082733 TCGTTGAAATCTGAGTCTCGTCAT 60.083 41.667 0.00 0.00 0.00 3.06
118 119 3.252458 TCGTTGAAATCTGAGTCTCGTCA 59.748 43.478 0.00 0.00 0.00 4.35
119 120 3.822996 TCGTTGAAATCTGAGTCTCGTC 58.177 45.455 0.00 0.00 0.00 4.20
120 121 3.827625 CTCGTTGAAATCTGAGTCTCGT 58.172 45.455 0.00 0.00 0.00 4.18
121 122 2.596419 GCTCGTTGAAATCTGAGTCTCG 59.404 50.000 0.00 0.00 0.00 4.04
122 123 2.926838 GGCTCGTTGAAATCTGAGTCTC 59.073 50.000 0.00 0.00 30.60 3.36
123 124 2.300152 TGGCTCGTTGAAATCTGAGTCT 59.700 45.455 0.00 0.00 34.27 3.24
124 125 2.670414 CTGGCTCGTTGAAATCTGAGTC 59.330 50.000 0.00 0.00 33.77 3.36
125 126 2.300152 TCTGGCTCGTTGAAATCTGAGT 59.700 45.455 0.00 0.00 0.00 3.41
126 127 2.964740 TCTGGCTCGTTGAAATCTGAG 58.035 47.619 0.00 0.00 0.00 3.35
127 128 3.401033 TTCTGGCTCGTTGAAATCTGA 57.599 42.857 0.00 0.00 0.00 3.27
128 129 4.222114 GTTTTCTGGCTCGTTGAAATCTG 58.778 43.478 0.00 0.00 31.08 2.90
129 130 3.882888 TGTTTTCTGGCTCGTTGAAATCT 59.117 39.130 0.00 0.00 31.08 2.40
130 131 4.223320 TGTTTTCTGGCTCGTTGAAATC 57.777 40.909 0.00 0.00 31.08 2.17
131 132 4.359706 GTTGTTTTCTGGCTCGTTGAAAT 58.640 39.130 0.00 0.00 31.08 2.17
132 133 3.428316 GGTTGTTTTCTGGCTCGTTGAAA 60.428 43.478 0.00 0.00 0.00 2.69
133 134 2.098443 GGTTGTTTTCTGGCTCGTTGAA 59.902 45.455 0.00 0.00 0.00 2.69
134 135 1.673920 GGTTGTTTTCTGGCTCGTTGA 59.326 47.619 0.00 0.00 0.00 3.18
135 136 1.269051 GGGTTGTTTTCTGGCTCGTTG 60.269 52.381 0.00 0.00 0.00 4.10
136 137 1.029681 GGGTTGTTTTCTGGCTCGTT 58.970 50.000 0.00 0.00 0.00 3.85
137 138 0.822121 GGGGTTGTTTTCTGGCTCGT 60.822 55.000 0.00 0.00 0.00 4.18
138 139 0.537371 AGGGGTTGTTTTCTGGCTCG 60.537 55.000 0.00 0.00 0.00 5.03
139 140 0.961753 CAGGGGTTGTTTTCTGGCTC 59.038 55.000 0.00 0.00 0.00 4.70
140 141 0.555769 TCAGGGGTTGTTTTCTGGCT 59.444 50.000 0.00 0.00 0.00 4.75
141 142 0.961753 CTCAGGGGTTGTTTTCTGGC 59.038 55.000 0.00 0.00 0.00 4.85
142 143 2.158608 ACTCTCAGGGGTTGTTTTCTGG 60.159 50.000 0.00 0.00 0.00 3.86
143 144 3.142174 GACTCTCAGGGGTTGTTTTCTG 58.858 50.000 0.00 0.00 0.00 3.02
144 145 3.049344 AGACTCTCAGGGGTTGTTTTCT 58.951 45.455 0.00 0.00 0.00 2.52
145 146 3.142174 CAGACTCTCAGGGGTTGTTTTC 58.858 50.000 0.00 0.00 0.00 2.29
146 147 2.777692 TCAGACTCTCAGGGGTTGTTTT 59.222 45.455 0.00 0.00 0.00 2.43
147 148 2.408565 TCAGACTCTCAGGGGTTGTTT 58.591 47.619 0.00 0.00 0.00 2.83
148 149 2.103153 TCAGACTCTCAGGGGTTGTT 57.897 50.000 0.00 0.00 0.00 2.83
149 150 2.183679 GATCAGACTCTCAGGGGTTGT 58.816 52.381 0.00 0.00 0.00 3.32
150 151 1.484240 GGATCAGACTCTCAGGGGTTG 59.516 57.143 0.00 0.00 0.00 3.77
151 152 1.623834 GGGATCAGACTCTCAGGGGTT 60.624 57.143 0.00 0.00 0.00 4.11
152 153 0.031616 GGGATCAGACTCTCAGGGGT 60.032 60.000 0.00 0.00 0.00 4.95
153 154 0.031716 TGGGATCAGACTCTCAGGGG 60.032 60.000 0.00 0.00 0.00 4.79
154 155 2.100128 ATGGGATCAGACTCTCAGGG 57.900 55.000 0.00 0.00 0.00 4.45
155 156 3.453717 TCAAATGGGATCAGACTCTCAGG 59.546 47.826 0.00 0.00 0.00 3.86
156 157 4.443175 CCTCAAATGGGATCAGACTCTCAG 60.443 50.000 0.00 0.00 0.00 3.35
157 158 3.453717 CCTCAAATGGGATCAGACTCTCA 59.546 47.826 0.00 0.00 0.00 3.27
158 159 4.070630 CCTCAAATGGGATCAGACTCTC 57.929 50.000 0.00 0.00 0.00 3.20
169 170 1.228510 GAGCCTCCCCTCAAATGGG 59.771 63.158 0.00 0.00 46.68 4.00
170 171 1.228510 GGAGCCTCCCCTCAAATGG 59.771 63.158 0.00 0.00 33.47 3.16
171 172 1.153086 CGGAGCCTCCCCTCAAATG 60.153 63.158 4.85 0.00 31.13 2.32
172 173 2.378634 CCGGAGCCTCCCCTCAAAT 61.379 63.158 4.85 0.00 31.13 2.32
173 174 3.009115 CCGGAGCCTCCCCTCAAA 61.009 66.667 4.85 0.00 31.13 2.69
174 175 4.332543 ACCGGAGCCTCCCCTCAA 62.333 66.667 9.46 0.00 31.13 3.02
175 176 4.779733 GACCGGAGCCTCCCCTCA 62.780 72.222 9.46 0.00 31.13 3.86
182 183 1.152440 CTATGGAGGACCGGAGCCT 60.152 63.158 18.36 18.36 39.42 4.58
183 184 2.873525 GCTATGGAGGACCGGAGCC 61.874 68.421 9.46 9.59 39.25 4.70
184 185 2.737830 GCTATGGAGGACCGGAGC 59.262 66.667 9.46 0.00 38.62 4.70
185 186 0.833834 ATGGCTATGGAGGACCGGAG 60.834 60.000 9.46 0.00 39.42 4.63
186 187 1.121407 CATGGCTATGGAGGACCGGA 61.121 60.000 9.46 0.00 39.42 5.14
187 188 1.372683 CATGGCTATGGAGGACCGG 59.627 63.158 0.00 0.00 39.42 5.28
196 197 1.193323 TTTTGGTGGCCATGGCTATG 58.807 50.000 34.70 2.48 41.60 2.23
197 198 1.554617 GTTTTTGGTGGCCATGGCTAT 59.445 47.619 34.70 0.00 41.60 2.97
198 199 0.972883 GTTTTTGGTGGCCATGGCTA 59.027 50.000 34.70 28.21 41.60 3.93
199 200 1.754107 GTTTTTGGTGGCCATGGCT 59.246 52.632 34.70 0.00 41.60 4.75
200 201 1.302431 GGTTTTTGGTGGCCATGGC 60.302 57.895 29.47 29.47 41.06 4.40
201 202 0.035176 CTGGTTTTTGGTGGCCATGG 59.965 55.000 9.72 7.63 31.53 3.66
202 203 1.001181 CTCTGGTTTTTGGTGGCCATG 59.999 52.381 9.72 0.00 31.53 3.66
203 204 1.341080 CTCTGGTTTTTGGTGGCCAT 58.659 50.000 9.72 0.00 31.53 4.40
204 205 0.758685 CCTCTGGTTTTTGGTGGCCA 60.759 55.000 0.00 0.00 0.00 5.36
205 206 1.471829 CCCTCTGGTTTTTGGTGGCC 61.472 60.000 0.00 0.00 0.00 5.36
206 207 0.469144 TCCCTCTGGTTTTTGGTGGC 60.469 55.000 0.00 0.00 0.00 5.01
207 208 1.144913 TCTCCCTCTGGTTTTTGGTGG 59.855 52.381 0.00 0.00 0.00 4.61
208 209 2.656947 TCTCCCTCTGGTTTTTGGTG 57.343 50.000 0.00 0.00 0.00 4.17
209 210 2.158460 CCTTCTCCCTCTGGTTTTTGGT 60.158 50.000 0.00 0.00 0.00 3.67
210 211 2.519013 CCTTCTCCCTCTGGTTTTTGG 58.481 52.381 0.00 0.00 0.00 3.28
211 212 1.889170 GCCTTCTCCCTCTGGTTTTTG 59.111 52.381 0.00 0.00 0.00 2.44
212 213 1.499007 TGCCTTCTCCCTCTGGTTTTT 59.501 47.619 0.00 0.00 0.00 1.94
213 214 1.149101 TGCCTTCTCCCTCTGGTTTT 58.851 50.000 0.00 0.00 0.00 2.43
214 215 1.149101 TTGCCTTCTCCCTCTGGTTT 58.851 50.000 0.00 0.00 0.00 3.27
215 216 1.074566 CTTTGCCTTCTCCCTCTGGTT 59.925 52.381 0.00 0.00 0.00 3.67
216 217 0.695347 CTTTGCCTTCTCCCTCTGGT 59.305 55.000 0.00 0.00 0.00 4.00
217 218 0.034670 CCTTTGCCTTCTCCCTCTGG 60.035 60.000 0.00 0.00 0.00 3.86
218 219 0.987294 TCCTTTGCCTTCTCCCTCTG 59.013 55.000 0.00 0.00 0.00 3.35
219 220 1.632920 CTTCCTTTGCCTTCTCCCTCT 59.367 52.381 0.00 0.00 0.00 3.69
220 221 1.630878 TCTTCCTTTGCCTTCTCCCTC 59.369 52.381 0.00 0.00 0.00 4.30
221 222 1.747444 TCTTCCTTTGCCTTCTCCCT 58.253 50.000 0.00 0.00 0.00 4.20
222 223 2.224892 ACTTCTTCCTTTGCCTTCTCCC 60.225 50.000 0.00 0.00 0.00 4.30
223 224 3.147553 ACTTCTTCCTTTGCCTTCTCC 57.852 47.619 0.00 0.00 0.00 3.71
224 225 5.153950 TCTACTTCTTCCTTTGCCTTCTC 57.846 43.478 0.00 0.00 0.00 2.87
225 226 5.513962 CCTTCTACTTCTTCCTTTGCCTTCT 60.514 44.000 0.00 0.00 0.00 2.85
226 227 4.697828 CCTTCTACTTCTTCCTTTGCCTTC 59.302 45.833 0.00 0.00 0.00 3.46
227 228 4.351111 TCCTTCTACTTCTTCCTTTGCCTT 59.649 41.667 0.00 0.00 0.00 4.35
228 229 3.910627 TCCTTCTACTTCTTCCTTTGCCT 59.089 43.478 0.00 0.00 0.00 4.75
229 230 4.020128 TCTCCTTCTACTTCTTCCTTTGCC 60.020 45.833 0.00 0.00 0.00 4.52
230 231 5.153950 TCTCCTTCTACTTCTTCCTTTGC 57.846 43.478 0.00 0.00 0.00 3.68
231 232 5.337975 CCCTCTCCTTCTACTTCTTCCTTTG 60.338 48.000 0.00 0.00 0.00 2.77
232 233 4.780554 CCCTCTCCTTCTACTTCTTCCTTT 59.219 45.833 0.00 0.00 0.00 3.11
233 234 4.358214 CCCTCTCCTTCTACTTCTTCCTT 58.642 47.826 0.00 0.00 0.00 3.36
234 235 3.884123 GCCCTCTCCTTCTACTTCTTCCT 60.884 52.174 0.00 0.00 0.00 3.36
235 236 2.432874 GCCCTCTCCTTCTACTTCTTCC 59.567 54.545 0.00 0.00 0.00 3.46
236 237 3.371034 AGCCCTCTCCTTCTACTTCTTC 58.629 50.000 0.00 0.00 0.00 2.87
237 238 3.012388 AGAGCCCTCTCCTTCTACTTCTT 59.988 47.826 0.00 0.00 40.22 2.52
238 239 2.585432 AGAGCCCTCTCCTTCTACTTCT 59.415 50.000 0.00 0.00 40.22 2.85
239 240 3.026707 AGAGCCCTCTCCTTCTACTTC 57.973 52.381 0.00 0.00 40.22 3.01
254 255 0.990818 AATGGGAAGGAGGGAGAGCC 60.991 60.000 0.00 0.00 0.00 4.70
255 256 0.922626 AAATGGGAAGGAGGGAGAGC 59.077 55.000 0.00 0.00 0.00 4.09
256 257 3.746792 AAAAATGGGAAGGAGGGAGAG 57.253 47.619 0.00 0.00 0.00 3.20
257 258 3.053619 GCTAAAAATGGGAAGGAGGGAGA 60.054 47.826 0.00 0.00 0.00 3.71
258 259 3.291584 GCTAAAAATGGGAAGGAGGGAG 58.708 50.000 0.00 0.00 0.00 4.30
259 260 2.652348 TGCTAAAAATGGGAAGGAGGGA 59.348 45.455 0.00 0.00 0.00 4.20
260 261 3.026694 CTGCTAAAAATGGGAAGGAGGG 58.973 50.000 0.00 0.00 0.00 4.30
261 262 3.701664 ACTGCTAAAAATGGGAAGGAGG 58.298 45.455 0.00 0.00 32.28 4.30
262 263 5.946377 ACTTACTGCTAAAAATGGGAAGGAG 59.054 40.000 0.00 0.00 34.01 3.69
263 264 5.887754 ACTTACTGCTAAAAATGGGAAGGA 58.112 37.500 0.00 0.00 0.00 3.36
264 265 7.110155 TCTACTTACTGCTAAAAATGGGAAGG 58.890 38.462 0.00 0.00 0.00 3.46
265 266 8.561738 TTCTACTTACTGCTAAAAATGGGAAG 57.438 34.615 0.00 0.00 0.00 3.46
266 267 8.161425 ACTTCTACTTACTGCTAAAAATGGGAA 58.839 33.333 0.00 0.00 0.00 3.97
267 268 7.686434 ACTTCTACTTACTGCTAAAAATGGGA 58.314 34.615 0.00 0.00 0.00 4.37
268 269 7.923414 ACTTCTACTTACTGCTAAAAATGGG 57.077 36.000 0.00 0.00 0.00 4.00
269 270 9.871238 TCTACTTCTACTTACTGCTAAAAATGG 57.129 33.333 0.00 0.00 0.00 3.16
277 278 9.169592 CTTCTACTTCTACTTCTACTTACTGCT 57.830 37.037 0.00 0.00 0.00 4.24
278 279 8.949177 ACTTCTACTTCTACTTCTACTTACTGC 58.051 37.037 0.00 0.00 0.00 4.40
289 290 9.478768 GCTAAGAAACAACTTCTACTTCTACTT 57.521 33.333 0.00 0.00 44.00 2.24
290 291 8.639761 TGCTAAGAAACAACTTCTACTTCTACT 58.360 33.333 0.00 0.00 44.00 2.57
291 292 8.813643 TGCTAAGAAACAACTTCTACTTCTAC 57.186 34.615 0.00 0.00 44.00 2.59
292 293 8.639761 ACTGCTAAGAAACAACTTCTACTTCTA 58.360 33.333 0.00 0.00 44.00 2.10
293 294 7.501844 ACTGCTAAGAAACAACTTCTACTTCT 58.498 34.615 0.00 0.00 44.00 2.85
294 295 7.716768 ACTGCTAAGAAACAACTTCTACTTC 57.283 36.000 0.00 0.00 44.00 3.01
295 296 9.262358 CTTACTGCTAAGAAACAACTTCTACTT 57.738 33.333 0.00 0.00 44.00 2.24
296 297 8.422566 ACTTACTGCTAAGAAACAACTTCTACT 58.577 33.333 0.07 0.00 44.00 2.57
297 298 8.590719 ACTTACTGCTAAGAAACAACTTCTAC 57.409 34.615 0.07 0.00 44.00 2.59
298 299 9.909644 CTACTTACTGCTAAGAAACAACTTCTA 57.090 33.333 0.07 0.00 44.00 2.10
299 300 8.639761 TCTACTTACTGCTAAGAAACAACTTCT 58.360 33.333 0.07 0.00 46.92 2.85
300 301 8.813643 TCTACTTACTGCTAAGAAACAACTTC 57.186 34.615 0.07 0.00 34.46 3.01
301 302 9.262358 CTTCTACTTACTGCTAAGAAACAACTT 57.738 33.333 0.07 0.00 34.46 2.66
302 303 8.422566 ACTTCTACTTACTGCTAAGAAACAACT 58.577 33.333 0.07 0.00 34.46 3.16
303 304 8.590719 ACTTCTACTTACTGCTAAGAAACAAC 57.409 34.615 0.07 0.00 34.46 3.32
304 305 9.609346 AAACTTCTACTTACTGCTAAGAAACAA 57.391 29.630 0.07 0.00 34.46 2.83
305 306 9.609346 AAAACTTCTACTTACTGCTAAGAAACA 57.391 29.630 0.07 0.00 34.46 2.83
329 330 4.261801 CCTGCTCTTCCCTCGAATAAAAA 58.738 43.478 0.00 0.00 0.00 1.94
330 331 3.370527 CCCTGCTCTTCCCTCGAATAAAA 60.371 47.826 0.00 0.00 0.00 1.52
331 332 2.170607 CCCTGCTCTTCCCTCGAATAAA 59.829 50.000 0.00 0.00 0.00 1.40
332 333 1.762957 CCCTGCTCTTCCCTCGAATAA 59.237 52.381 0.00 0.00 0.00 1.40
333 334 1.063190 TCCCTGCTCTTCCCTCGAATA 60.063 52.381 0.00 0.00 0.00 1.75
334 335 0.325671 TCCCTGCTCTTCCCTCGAAT 60.326 55.000 0.00 0.00 0.00 3.34
335 336 0.544357 TTCCCTGCTCTTCCCTCGAA 60.544 55.000 0.00 0.00 0.00 3.71
336 337 0.972983 CTTCCCTGCTCTTCCCTCGA 60.973 60.000 0.00 0.00 0.00 4.04
337 338 1.519719 CTTCCCTGCTCTTCCCTCG 59.480 63.158 0.00 0.00 0.00 4.63
338 339 0.618968 TCCTTCCCTGCTCTTCCCTC 60.619 60.000 0.00 0.00 0.00 4.30
339 340 0.045469 ATCCTTCCCTGCTCTTCCCT 59.955 55.000 0.00 0.00 0.00 4.20
340 341 0.182299 CATCCTTCCCTGCTCTTCCC 59.818 60.000 0.00 0.00 0.00 3.97
341 342 1.140652 CTCATCCTTCCCTGCTCTTCC 59.859 57.143 0.00 0.00 0.00 3.46
342 343 1.836802 ACTCATCCTTCCCTGCTCTTC 59.163 52.381 0.00 0.00 0.00 2.87
343 344 1.558756 CACTCATCCTTCCCTGCTCTT 59.441 52.381 0.00 0.00 0.00 2.85
344 345 1.202330 CACTCATCCTTCCCTGCTCT 58.798 55.000 0.00 0.00 0.00 4.09
345 346 0.179936 CCACTCATCCTTCCCTGCTC 59.820 60.000 0.00 0.00 0.00 4.26
346 347 1.277580 CCCACTCATCCTTCCCTGCT 61.278 60.000 0.00 0.00 0.00 4.24
347 348 1.225704 CCCACTCATCCTTCCCTGC 59.774 63.158 0.00 0.00 0.00 4.85
348 349 1.225704 GCCCACTCATCCTTCCCTG 59.774 63.158 0.00 0.00 0.00 4.45
349 350 2.003548 GGCCCACTCATCCTTCCCT 61.004 63.158 0.00 0.00 0.00 4.20
350 351 2.597903 GGCCCACTCATCCTTCCC 59.402 66.667 0.00 0.00 0.00 3.97
371 372 3.824133 TGATCCAGCCCATTTATCAGTG 58.176 45.455 0.00 0.00 0.00 3.66
398 399 0.963962 GATATGTGCTGGCCCATTGG 59.036 55.000 0.00 0.00 0.00 3.16
572 582 0.846427 TCTTGCCACCAGGGAGGAAT 60.846 55.000 5.93 0.00 38.41 3.01
841 883 0.478507 CTCTCCTCCTCCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
842 884 0.998945 CCTCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
843 885 0.996762 TCCTCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
844 886 0.478507 CTCCTCTCCTCCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
845 887 0.998945 CCTCCTCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
846 888 0.996762 TCCTCCTCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
847 889 0.478507 CTCCTCCTCTCCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
848 890 0.998945 CCTCCTCCTCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
849 891 0.996762 TCCTCCTCCTCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
850 892 0.478507 CTCCTCCTCCTCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
851 893 0.998945 CCTCCTCCTCCTCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
852 894 0.996762 TCCTCCTCCTCCTCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
853 895 0.478507 CTCCTCCTCCTCCTCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
854 896 0.998945 CCTCCTCCTCCTCCTCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
855 897 0.996762 TCCTCCTCCTCCTCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
856 898 0.478507 CTCCTCCTCCTCCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
857 899 0.047176 TCTCCTCCTCCTCCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
926 968 2.640184 TCTGAGGCGATCGAAGAACTA 58.360 47.619 21.57 0.00 43.58 2.24
1018 1075 3.142838 GGCCTTGGTCATGCGCAT 61.143 61.111 19.28 19.28 0.00 4.73
1165 1223 0.877071 GAATGGGTGTGAGTGCACTG 59.123 55.000 27.27 0.00 45.36 3.66
1230 1496 4.021368 TCGTCTCCTAACAAGGGAAGAAAG 60.021 45.833 0.00 0.00 31.92 2.62
1360 1943 0.040157 CAAACGACACCATGCACCTG 60.040 55.000 0.00 0.00 0.00 4.00
1551 2159 7.646314 TCAGTATATACGAGTAAGTCAAAGCC 58.354 38.462 7.23 0.00 0.00 4.35
1623 3770 3.314913 TCAGCACACACACACCTTTTATG 59.685 43.478 0.00 0.00 0.00 1.90
1983 4284 7.906527 GCTATCAATGTTTTGAATCAAAATGGC 59.093 33.333 21.97 14.85 44.70 4.40
1995 4296 9.447040 CTACATCATGAAGCTATCAATGTTTTG 57.553 33.333 15.26 0.00 42.54 2.44
2085 4442 3.482156 AGAACAGCAAGCTGAGAAAGA 57.518 42.857 27.17 0.00 46.30 2.52
2086 4443 3.852572 GCAAGAACAGCAAGCTGAGAAAG 60.853 47.826 27.17 14.49 46.30 2.62
2087 4444 2.033801 GCAAGAACAGCAAGCTGAGAAA 59.966 45.455 27.17 0.00 46.30 2.52
2088 4445 1.605710 GCAAGAACAGCAAGCTGAGAA 59.394 47.619 27.17 0.00 46.30 2.87
2307 4692 1.258982 CAAGCTCACACGAACTCACAC 59.741 52.381 0.00 0.00 0.00 3.82
2316 4873 2.071688 AAGTAGAGCAAGCTCACACG 57.928 50.000 22.68 0.00 44.99 4.49
2487 5098 0.324614 CATGGAGCACTACCACACCA 59.675 55.000 0.00 0.00 40.36 4.17
2619 5231 1.408702 GGTGCTGCTCCTTTCAAAACA 59.591 47.619 13.24 0.00 0.00 2.83
2765 7277 1.735376 ATCTTCGTCGTCATCCGGGG 61.735 60.000 0.00 0.00 37.11 5.73
2797 7312 3.379372 CCATCATCAAGGAAGCGAACATT 59.621 43.478 0.00 0.00 0.00 2.71
2842 7366 1.529244 GCTTGACCAAGGTGCCTGT 60.529 57.895 11.26 0.00 38.80 4.00
3203 7768 7.667557 ACCATCCATTCATCATTCATTCATTC 58.332 34.615 0.00 0.00 0.00 2.67
3246 7811 5.931146 CAGAGGAGCCACTATTTGTATGATC 59.069 44.000 0.00 0.00 0.00 2.92
3275 7840 2.749621 GACGCAGAATCATGGAAGGTTT 59.250 45.455 0.00 0.00 0.00 3.27
3323 7888 6.128282 GGCAAAACAATAAGATCGAGAGACAA 60.128 38.462 0.00 0.00 46.97 3.18
3324 7889 5.351465 GGCAAAACAATAAGATCGAGAGACA 59.649 40.000 0.00 0.00 46.97 3.41
3325 7890 5.500931 CGGCAAAACAATAAGATCGAGAGAC 60.501 44.000 0.00 0.00 46.97 3.36
3327 7892 4.783450 GCGGCAAAACAATAAGATCGAGAG 60.783 45.833 0.00 0.00 0.00 3.20
3329 7894 3.354397 GCGGCAAAACAATAAGATCGAG 58.646 45.455 0.00 0.00 0.00 4.04
3331 7896 2.101125 CGCGGCAAAACAATAAGATCG 58.899 47.619 0.00 0.00 0.00 3.69
3332 7897 1.846175 GCGCGGCAAAACAATAAGATC 59.154 47.619 8.83 0.00 0.00 2.75
3333 7898 1.201181 TGCGCGGCAAAACAATAAGAT 59.799 42.857 8.83 0.00 34.76 2.40
3334 7899 0.593618 TGCGCGGCAAAACAATAAGA 59.406 45.000 8.83 0.00 34.76 2.10
3335 7900 1.627879 ATGCGCGGCAAAACAATAAG 58.372 45.000 8.83 0.00 43.62 1.73
3336 7901 2.921634 TATGCGCGGCAAAACAATAA 57.078 40.000 8.83 0.00 43.62 1.40
3337 7902 2.098280 ACATATGCGCGGCAAAACAATA 59.902 40.909 8.83 0.00 43.62 1.90
3338 7903 1.135141 ACATATGCGCGGCAAAACAAT 60.135 42.857 8.83 0.00 43.62 2.71
3339 7904 0.242286 ACATATGCGCGGCAAAACAA 59.758 45.000 8.83 0.00 43.62 2.83
3340 7905 0.242286 AACATATGCGCGGCAAAACA 59.758 45.000 8.83 0.00 43.62 2.83
3341 7906 0.913876 GAACATATGCGCGGCAAAAC 59.086 50.000 8.83 0.00 43.62 2.43
3342 7907 0.808125 AGAACATATGCGCGGCAAAA 59.192 45.000 8.83 0.00 43.62 2.44
3343 7908 0.808125 AAGAACATATGCGCGGCAAA 59.192 45.000 8.83 0.00 43.62 3.68
3344 7909 0.808125 AAAGAACATATGCGCGGCAA 59.192 45.000 8.83 0.00 43.62 4.52
3345 7910 0.808125 AAAAGAACATATGCGCGGCA 59.192 45.000 8.83 7.01 44.86 5.69
3346 7911 1.908065 AAAAAGAACATATGCGCGGC 58.092 45.000 8.83 0.00 0.00 6.53
3443 8008 1.308998 CCCATCCGTGTTAATCCTGC 58.691 55.000 0.00 0.00 0.00 4.85
3519 8084 2.328099 GCCGTTGCTGGTGAAGAGG 61.328 63.158 0.00 0.00 33.53 3.69
3520 8085 3.257933 GCCGTTGCTGGTGAAGAG 58.742 61.111 0.00 0.00 33.53 2.85
3618 8183 5.232838 GCTGTTTGTTTGTTTGAGGAGAATG 59.767 40.000 0.00 0.00 0.00 2.67
3704 8302 4.187694 CAGCTCAGGGAAGAAGTGATAAC 58.812 47.826 0.00 0.00 0.00 1.89
3749 8347 1.074566 AGCCTGAGAAGAAAAGGTGGG 59.925 52.381 0.00 0.00 33.34 4.61
3754 8352 5.476254 AGGAAATCAAGCCTGAGAAGAAAAG 59.524 40.000 0.00 0.00 34.23 2.27
3812 8410 4.219725 GGGATACTCTGGAGTTAGATGAGC 59.780 50.000 8.60 0.00 42.54 4.26
3984 8582 2.372074 GGCCCTTCCGATGGTGGTA 61.372 63.158 0.00 0.00 0.00 3.25
4005 8603 2.328099 GGTTCTTGCTGCAGGACCG 61.328 63.158 17.12 6.61 0.00 4.79
4006 8604 0.538287 AAGGTTCTTGCTGCAGGACC 60.538 55.000 17.12 17.07 0.00 4.46
4007 8605 0.877743 GAAGGTTCTTGCTGCAGGAC 59.122 55.000 17.12 9.43 0.00 3.85
4008 8606 0.767375 AGAAGGTTCTTGCTGCAGGA 59.233 50.000 17.12 10.66 32.55 3.86
4009 8607 3.336122 AGAAGGTTCTTGCTGCAGG 57.664 52.632 17.12 5.27 32.55 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.