Multiple sequence alignment - TraesCS7A01G049400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G049400 chr7A 100.000 2790 0 0 1 2790 22977922 22975133 0.000000e+00 5153.0
1 TraesCS7A01G049400 chr7D 92.546 1838 105 18 974 2790 22624704 22622878 0.000000e+00 2606.0
2 TraesCS7A01G049400 chr7D 87.338 308 16 9 360 653 22625151 22624853 5.760000e-87 331.0
3 TraesCS7A01G049400 chr7D 93.617 94 6 0 1 94 159662300 159662393 1.040000e-29 141.0
4 TraesCS7A01G049400 chr7D 93.617 94 6 0 1 94 580554054 580554147 1.040000e-29 141.0
5 TraesCS7A01G049400 chr7D 95.181 83 3 1 653 734 388696860 388696942 2.260000e-26 130.0
6 TraesCS7A01G049400 chr7D 93.103 87 5 1 649 734 5068172 5068086 2.920000e-25 126.0
7 TraesCS7A01G049400 chr7D 85.455 110 5 2 850 952 22624808 22624703 1.370000e-18 104.0
8 TraesCS7A01G049400 chr7D 100.000 38 0 0 732 769 22624848 22624811 1.390000e-08 71.3
9 TraesCS7A01G049400 chr4A 86.344 908 88 15 1889 2790 705544499 705543622 0.000000e+00 957.0
10 TraesCS7A01G049400 chr4A 89.150 553 30 17 1313 1857 705545029 705544499 0.000000e+00 662.0
11 TraesCS7A01G049400 chr4A 95.283 318 6 1 991 1308 705546408 705546100 1.930000e-136 496.0
12 TraesCS7A01G049400 chr4A 90.083 242 16 6 410 648 705546803 705546567 9.710000e-80 307.0
13 TraesCS7A01G049400 chr4A 95.349 86 4 0 777 862 163914561 163914476 1.350000e-28 137.0
14 TraesCS7A01G049400 chr1A 80.233 774 114 18 1006 1770 337776920 337776177 1.890000e-151 545.0
15 TraesCS7A01G049400 chr1A 92.632 95 7 0 1 95 521945114 521945208 1.350000e-28 137.0
16 TraesCS7A01G049400 chr1A 91.579 95 6 1 777 871 110282817 110282725 2.260000e-26 130.0
17 TraesCS7A01G049400 chr5A 80.606 330 52 7 1019 1342 17628655 17628978 7.720000e-61 244.0
18 TraesCS7A01G049400 chr5A 89.524 105 9 2 1 105 495395564 495395462 6.270000e-27 132.0
19 TraesCS7A01G049400 chr2D 80.435 322 58 3 1022 1342 599003780 599003463 9.990000e-60 241.0
20 TraesCS7A01G049400 chr2D 98.734 79 1 0 777 855 475134502 475134424 1.040000e-29 141.0
21 TraesCS7A01G049400 chr2A 80.124 322 59 3 1022 1342 733217332 733217015 4.650000e-58 235.0
22 TraesCS7A01G049400 chr2A 92.381 105 6 2 1 105 470645791 470645689 6.230000e-32 148.0
23 TraesCS7A01G049400 chr3D 94.681 94 5 0 1 94 6058210 6058117 2.240000e-31 147.0
24 TraesCS7A01G049400 chr3D 94.681 94 5 0 1 94 574565980 574566073 2.240000e-31 147.0
25 TraesCS7A01G049400 chr3D 89.474 95 9 1 649 742 303788543 303788449 4.880000e-23 119.0
26 TraesCS7A01G049400 chr6A 98.750 80 1 0 775 854 209854355 209854434 2.900000e-30 143.0
27 TraesCS7A01G049400 chr6D 93.617 94 6 0 1 94 75402946 75403039 1.040000e-29 141.0
28 TraesCS7A01G049400 chr5D 98.734 79 1 0 777 855 384795407 384795485 1.040000e-29 141.0
29 TraesCS7A01G049400 chr5D 89.720 107 7 4 777 880 524326471 524326366 1.740000e-27 134.0
30 TraesCS7A01G049400 chr5D 91.304 92 6 2 645 734 111788637 111788728 1.050000e-24 124.0
31 TraesCS7A01G049400 chr5D 90.526 95 7 2 649 741 329276198 329276292 1.050000e-24 124.0
32 TraesCS7A01G049400 chr3B 98.734 79 1 0 777 855 142730143 142730065 1.040000e-29 141.0
33 TraesCS7A01G049400 chr3B 96.429 84 2 1 777 860 55098938 55098856 1.350000e-28 137.0
34 TraesCS7A01G049400 chr3B 94.318 88 5 0 777 864 173097644 173097731 4.850000e-28 135.0
35 TraesCS7A01G049400 chr3A 92.632 95 7 0 1 95 203983229 203983323 1.350000e-28 137.0
36 TraesCS7A01G049400 chrUn 94.186 86 4 1 653 737 68883350 68883265 2.260000e-26 130.0
37 TraesCS7A01G049400 chr4D 91.398 93 7 1 653 744 434161696 434161604 2.920000e-25 126.0
38 TraesCS7A01G049400 chr4D 90.722 97 5 4 650 744 479997664 479997570 2.920000e-25 126.0
39 TraesCS7A01G049400 chr2B 89.691 97 9 1 649 744 785825918 785826014 3.770000e-24 122.0
40 TraesCS7A01G049400 chr2B 86.170 94 13 0 2 95 28252458 28252551 4.920000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G049400 chr7A 22975133 22977922 2789 True 5153.000 5153 100.00000 1 2790 1 chr7A.!!$R1 2789
1 TraesCS7A01G049400 chr7D 22622878 22625151 2273 True 778.075 2606 91.33475 360 2790 4 chr7D.!!$R2 2430
2 TraesCS7A01G049400 chr4A 705543622 705546803 3181 True 605.500 957 90.21500 410 2790 4 chr4A.!!$R2 2380
3 TraesCS7A01G049400 chr1A 337776177 337776920 743 True 545.000 545 80.23300 1006 1770 1 chr1A.!!$R2 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.035056 AACATACAGACCAGCAGCCC 60.035 55.0 0.00 0.00 0.00 5.19 F
971 1002 0.035630 GACCACCTTGAGCAGCTCAT 60.036 55.0 25.94 9.89 40.39 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 2880 0.109342 AGAACTCCACCAGCCTGTTG 59.891 55.0 0.00 0.00 0.00 3.33 R
2222 3363 0.108774 TGTTGCAACCGGTGATGGTA 59.891 50.0 26.14 0.76 42.89 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.630242 GTAATTTGATCTCATTCACCTGGAA 57.370 36.000 0.00 0.00 40.46 3.53
25 26 8.055279 GTAATTTGATCTCATTCACCTGGAAA 57.945 34.615 0.00 0.00 39.39 3.13
26 27 7.543359 AATTTGATCTCATTCACCTGGAAAA 57.457 32.000 0.00 0.00 39.39 2.29
27 28 5.964958 TTGATCTCATTCACCTGGAAAAC 57.035 39.130 0.00 0.00 39.39 2.43
28 29 4.984295 TGATCTCATTCACCTGGAAAACA 58.016 39.130 0.00 0.00 39.39 2.83
29 30 5.384336 TGATCTCATTCACCTGGAAAACAA 58.616 37.500 0.00 0.00 39.39 2.83
30 31 5.474532 TGATCTCATTCACCTGGAAAACAAG 59.525 40.000 0.00 0.00 39.39 3.16
31 32 5.047566 TCTCATTCACCTGGAAAACAAGA 57.952 39.130 0.00 0.00 39.39 3.02
32 33 5.634118 TCTCATTCACCTGGAAAACAAGAT 58.366 37.500 0.00 0.00 39.39 2.40
33 34 5.707298 TCTCATTCACCTGGAAAACAAGATC 59.293 40.000 0.00 0.00 39.39 2.75
34 35 4.455533 TCATTCACCTGGAAAACAAGATCG 59.544 41.667 0.00 0.00 39.39 3.69
35 36 2.778299 TCACCTGGAAAACAAGATCGG 58.222 47.619 0.00 0.00 0.00 4.18
36 37 2.370519 TCACCTGGAAAACAAGATCGGA 59.629 45.455 0.00 0.00 0.00 4.55
37 38 3.009033 TCACCTGGAAAACAAGATCGGAT 59.991 43.478 0.00 0.00 0.00 4.18
38 39 4.224147 TCACCTGGAAAACAAGATCGGATA 59.776 41.667 0.00 0.00 0.00 2.59
39 40 5.104527 TCACCTGGAAAACAAGATCGGATAT 60.105 40.000 0.00 0.00 0.00 1.63
40 41 6.099125 TCACCTGGAAAACAAGATCGGATATA 59.901 38.462 0.00 0.00 0.00 0.86
41 42 6.765989 CACCTGGAAAACAAGATCGGATATAA 59.234 38.462 0.00 0.00 0.00 0.98
42 43 6.766467 ACCTGGAAAACAAGATCGGATATAAC 59.234 38.462 0.00 0.00 0.00 1.89
43 44 6.204882 CCTGGAAAACAAGATCGGATATAACC 59.795 42.308 0.00 0.00 0.00 2.85
44 45 6.059484 TGGAAAACAAGATCGGATATAACCC 58.941 40.000 0.00 0.00 0.00 4.11
45 46 6.059484 GGAAAACAAGATCGGATATAACCCA 58.941 40.000 0.00 0.00 0.00 4.51
46 47 6.017357 GGAAAACAAGATCGGATATAACCCAC 60.017 42.308 0.00 0.00 0.00 4.61
47 48 4.252971 ACAAGATCGGATATAACCCACG 57.747 45.455 0.00 0.00 0.00 4.94
48 49 3.640029 ACAAGATCGGATATAACCCACGT 59.360 43.478 0.00 0.00 0.00 4.49
49 50 4.235360 CAAGATCGGATATAACCCACGTC 58.765 47.826 0.00 0.00 0.00 4.34
50 51 3.493334 AGATCGGATATAACCCACGTCA 58.507 45.455 0.00 0.00 0.00 4.35
51 52 3.506455 AGATCGGATATAACCCACGTCAG 59.494 47.826 0.00 0.00 0.00 3.51
52 53 1.338973 TCGGATATAACCCACGTCAGC 59.661 52.381 0.00 0.00 0.00 4.26
53 54 1.067974 CGGATATAACCCACGTCAGCA 59.932 52.381 0.00 0.00 0.00 4.41
54 55 2.480845 GGATATAACCCACGTCAGCAC 58.519 52.381 0.00 0.00 0.00 4.40
55 56 2.159014 GGATATAACCCACGTCAGCACA 60.159 50.000 0.00 0.00 0.00 4.57
56 57 2.373540 TATAACCCACGTCAGCACAC 57.626 50.000 0.00 0.00 0.00 3.82
57 58 0.394938 ATAACCCACGTCAGCACACA 59.605 50.000 0.00 0.00 0.00 3.72
58 59 0.531090 TAACCCACGTCAGCACACAC 60.531 55.000 0.00 0.00 0.00 3.82
59 60 2.203001 CCCACGTCAGCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
60 61 2.534019 CCCACGTCAGCACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
61 62 1.813337 CCACGTCAGCACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
62 63 1.159713 CCACGTCAGCACACACACAT 61.160 55.000 0.00 0.00 0.00 3.21
63 64 0.233074 CACGTCAGCACACACACATC 59.767 55.000 0.00 0.00 0.00 3.06
64 65 0.104855 ACGTCAGCACACACACATCT 59.895 50.000 0.00 0.00 0.00 2.90
65 66 1.220529 CGTCAGCACACACACATCTT 58.779 50.000 0.00 0.00 0.00 2.40
66 67 2.223947 ACGTCAGCACACACACATCTTA 60.224 45.455 0.00 0.00 0.00 2.10
67 68 2.995939 CGTCAGCACACACACATCTTAT 59.004 45.455 0.00 0.00 0.00 1.73
68 69 4.173256 CGTCAGCACACACACATCTTATA 58.827 43.478 0.00 0.00 0.00 0.98
69 70 4.266265 CGTCAGCACACACACATCTTATAG 59.734 45.833 0.00 0.00 0.00 1.31
70 71 4.033358 GTCAGCACACACACATCTTATAGC 59.967 45.833 0.00 0.00 0.00 2.97
71 72 3.934579 CAGCACACACACATCTTATAGCA 59.065 43.478 0.00 0.00 0.00 3.49
72 73 4.573607 CAGCACACACACATCTTATAGCAT 59.426 41.667 0.00 0.00 0.00 3.79
73 74 4.813161 AGCACACACACATCTTATAGCATC 59.187 41.667 0.00 0.00 0.00 3.91
74 75 4.571984 GCACACACACATCTTATAGCATCA 59.428 41.667 0.00 0.00 0.00 3.07
75 76 5.503031 GCACACACACATCTTATAGCATCAC 60.503 44.000 0.00 0.00 0.00 3.06
76 77 5.581874 CACACACACATCTTATAGCATCACA 59.418 40.000 0.00 0.00 0.00 3.58
77 78 6.259387 CACACACACATCTTATAGCATCACAT 59.741 38.462 0.00 0.00 0.00 3.21
78 79 6.481313 ACACACACATCTTATAGCATCACATC 59.519 38.462 0.00 0.00 0.00 3.06
79 80 5.994054 ACACACATCTTATAGCATCACATCC 59.006 40.000 0.00 0.00 0.00 3.51
80 81 5.993441 CACACATCTTATAGCATCACATCCA 59.007 40.000 0.00 0.00 0.00 3.41
81 82 6.147328 CACACATCTTATAGCATCACATCCAG 59.853 42.308 0.00 0.00 0.00 3.86
82 83 6.183361 ACACATCTTATAGCATCACATCCAGT 60.183 38.462 0.00 0.00 0.00 4.00
88 89 3.586174 ATAGCATCACATCCAGTGGCTAT 59.414 43.478 3.51 10.94 45.42 2.97
95 96 4.780815 CACATCCAGTGGCTATAAAAGGA 58.219 43.478 3.51 0.00 44.69 3.36
96 97 4.818546 CACATCCAGTGGCTATAAAAGGAG 59.181 45.833 3.51 0.00 44.69 3.69
97 98 4.475016 ACATCCAGTGGCTATAAAAGGAGT 59.525 41.667 3.51 0.00 0.00 3.85
98 99 5.665812 ACATCCAGTGGCTATAAAAGGAGTA 59.334 40.000 3.51 0.00 0.00 2.59
99 100 6.330250 ACATCCAGTGGCTATAAAAGGAGTAT 59.670 38.462 3.51 0.00 0.00 2.12
100 101 7.512746 ACATCCAGTGGCTATAAAAGGAGTATA 59.487 37.037 3.51 0.00 0.00 1.47
101 102 8.543774 CATCCAGTGGCTATAAAAGGAGTATAT 58.456 37.037 3.51 0.00 0.00 0.86
102 103 7.907389 TCCAGTGGCTATAAAAGGAGTATATG 58.093 38.462 3.51 0.00 0.00 1.78
103 104 7.733047 TCCAGTGGCTATAAAAGGAGTATATGA 59.267 37.037 3.51 0.00 0.00 2.15
104 105 8.037758 CCAGTGGCTATAAAAGGAGTATATGAG 58.962 40.741 0.00 0.00 0.00 2.90
105 106 8.589338 CAGTGGCTATAAAAGGAGTATATGAGT 58.411 37.037 0.00 0.00 0.00 3.41
106 107 9.160412 AGTGGCTATAAAAGGAGTATATGAGTT 57.840 33.333 0.00 0.00 0.00 3.01
107 108 9.425577 GTGGCTATAAAAGGAGTATATGAGTTC 57.574 37.037 0.00 0.00 0.00 3.01
108 109 9.381038 TGGCTATAAAAGGAGTATATGAGTTCT 57.619 33.333 0.00 0.00 0.00 3.01
115 116 9.959721 AAAAGGAGTATATGAGTTCTAGCAAAA 57.040 29.630 0.00 0.00 0.00 2.44
116 117 8.950208 AAGGAGTATATGAGTTCTAGCAAAAC 57.050 34.615 0.00 0.00 0.00 2.43
117 118 8.312669 AGGAGTATATGAGTTCTAGCAAAACT 57.687 34.615 0.00 0.00 39.61 2.66
118 119 8.200792 AGGAGTATATGAGTTCTAGCAAAACTG 58.799 37.037 0.32 0.00 37.10 3.16
119 120 7.982354 GGAGTATATGAGTTCTAGCAAAACTGT 59.018 37.037 0.32 0.00 37.10 3.55
124 125 9.944376 ATATGAGTTCTAGCAAAACTGTAGAAA 57.056 29.630 0.32 0.00 37.10 2.52
125 126 8.677148 ATGAGTTCTAGCAAAACTGTAGAAAA 57.323 30.769 0.32 0.00 37.10 2.29
126 127 8.500753 TGAGTTCTAGCAAAACTGTAGAAAAA 57.499 30.769 0.32 0.00 37.10 1.94
127 128 9.120538 TGAGTTCTAGCAAAACTGTAGAAAAAT 57.879 29.630 0.32 0.00 37.10 1.82
130 131 9.331106 GTTCTAGCAAAACTGTAGAAAAATAGC 57.669 33.333 0.00 0.00 35.17 2.97
131 132 8.040716 TCTAGCAAAACTGTAGAAAAATAGCC 57.959 34.615 0.00 0.00 0.00 3.93
132 133 6.025749 AGCAAAACTGTAGAAAAATAGCCC 57.974 37.500 0.00 0.00 0.00 5.19
133 134 5.538433 AGCAAAACTGTAGAAAAATAGCCCA 59.462 36.000 0.00 0.00 0.00 5.36
134 135 6.041523 AGCAAAACTGTAGAAAAATAGCCCAA 59.958 34.615 0.00 0.00 0.00 4.12
135 136 6.704050 GCAAAACTGTAGAAAAATAGCCCAAA 59.296 34.615 0.00 0.00 0.00 3.28
136 137 7.225734 GCAAAACTGTAGAAAAATAGCCCAAAA 59.774 33.333 0.00 0.00 0.00 2.44
137 138 8.547894 CAAAACTGTAGAAAAATAGCCCAAAAC 58.452 33.333 0.00 0.00 0.00 2.43
138 139 6.969993 ACTGTAGAAAAATAGCCCAAAACA 57.030 33.333 0.00 0.00 0.00 2.83
139 140 7.354751 ACTGTAGAAAAATAGCCCAAAACAA 57.645 32.000 0.00 0.00 0.00 2.83
140 141 7.207383 ACTGTAGAAAAATAGCCCAAAACAAC 58.793 34.615 0.00 0.00 0.00 3.32
141 142 7.113658 TGTAGAAAAATAGCCCAAAACAACA 57.886 32.000 0.00 0.00 0.00 3.33
142 143 7.731054 TGTAGAAAAATAGCCCAAAACAACAT 58.269 30.769 0.00 0.00 0.00 2.71
143 144 8.861086 TGTAGAAAAATAGCCCAAAACAACATA 58.139 29.630 0.00 0.00 0.00 2.29
144 145 9.135843 GTAGAAAAATAGCCCAAAACAACATAC 57.864 33.333 0.00 0.00 0.00 2.39
145 146 7.731054 AGAAAAATAGCCCAAAACAACATACA 58.269 30.769 0.00 0.00 0.00 2.29
146 147 7.872483 AGAAAAATAGCCCAAAACAACATACAG 59.128 33.333 0.00 0.00 0.00 2.74
147 148 6.909550 AAATAGCCCAAAACAACATACAGA 57.090 33.333 0.00 0.00 0.00 3.41
148 149 5.897377 ATAGCCCAAAACAACATACAGAC 57.103 39.130 0.00 0.00 0.00 3.51
149 150 2.890945 AGCCCAAAACAACATACAGACC 59.109 45.455 0.00 0.00 0.00 3.85
150 151 2.625790 GCCCAAAACAACATACAGACCA 59.374 45.455 0.00 0.00 0.00 4.02
151 152 3.305335 GCCCAAAACAACATACAGACCAG 60.305 47.826 0.00 0.00 0.00 4.00
152 153 3.305335 CCCAAAACAACATACAGACCAGC 60.305 47.826 0.00 0.00 0.00 4.85
153 154 3.317711 CCAAAACAACATACAGACCAGCA 59.682 43.478 0.00 0.00 0.00 4.41
154 155 4.539870 CAAAACAACATACAGACCAGCAG 58.460 43.478 0.00 0.00 0.00 4.24
155 156 1.813513 ACAACATACAGACCAGCAGC 58.186 50.000 0.00 0.00 0.00 5.25
156 157 1.089920 CAACATACAGACCAGCAGCC 58.910 55.000 0.00 0.00 0.00 4.85
157 158 0.035056 AACATACAGACCAGCAGCCC 60.035 55.000 0.00 0.00 0.00 5.19
158 159 1.200760 ACATACAGACCAGCAGCCCA 61.201 55.000 0.00 0.00 0.00 5.36
159 160 0.463295 CATACAGACCAGCAGCCCAG 60.463 60.000 0.00 0.00 0.00 4.45
160 161 0.618680 ATACAGACCAGCAGCCCAGA 60.619 55.000 0.00 0.00 0.00 3.86
161 162 0.835971 TACAGACCAGCAGCCCAGAA 60.836 55.000 0.00 0.00 0.00 3.02
162 163 1.073722 CAGACCAGCAGCCCAGAAA 59.926 57.895 0.00 0.00 0.00 2.52
163 164 0.538057 CAGACCAGCAGCCCAGAAAA 60.538 55.000 0.00 0.00 0.00 2.29
164 165 0.185901 AGACCAGCAGCCCAGAAAAA 59.814 50.000 0.00 0.00 0.00 1.94
165 166 0.600057 GACCAGCAGCCCAGAAAAAG 59.400 55.000 0.00 0.00 0.00 2.27
166 167 0.185901 ACCAGCAGCCCAGAAAAAGA 59.814 50.000 0.00 0.00 0.00 2.52
167 168 1.331214 CCAGCAGCCCAGAAAAAGAA 58.669 50.000 0.00 0.00 0.00 2.52
168 169 1.688197 CCAGCAGCCCAGAAAAAGAAA 59.312 47.619 0.00 0.00 0.00 2.52
169 170 2.288640 CCAGCAGCCCAGAAAAAGAAAG 60.289 50.000 0.00 0.00 0.00 2.62
170 171 2.363359 CAGCAGCCCAGAAAAAGAAAGT 59.637 45.455 0.00 0.00 0.00 2.66
171 172 3.033909 AGCAGCCCAGAAAAAGAAAGTT 58.966 40.909 0.00 0.00 0.00 2.66
172 173 4.037923 CAGCAGCCCAGAAAAAGAAAGTTA 59.962 41.667 0.00 0.00 0.00 2.24
173 174 4.835056 AGCAGCCCAGAAAAAGAAAGTTAT 59.165 37.500 0.00 0.00 0.00 1.89
174 175 6.010219 AGCAGCCCAGAAAAAGAAAGTTATA 58.990 36.000 0.00 0.00 0.00 0.98
175 176 6.665248 AGCAGCCCAGAAAAAGAAAGTTATAT 59.335 34.615 0.00 0.00 0.00 0.86
176 177 6.753744 GCAGCCCAGAAAAAGAAAGTTATATG 59.246 38.462 0.00 0.00 0.00 1.78
177 178 7.260603 CAGCCCAGAAAAAGAAAGTTATATGG 58.739 38.462 0.00 0.00 0.00 2.74
178 179 7.122650 CAGCCCAGAAAAAGAAAGTTATATGGA 59.877 37.037 0.00 0.00 0.00 3.41
179 180 7.841222 AGCCCAGAAAAAGAAAGTTATATGGAT 59.159 33.333 0.00 0.00 0.00 3.41
180 181 8.138074 GCCCAGAAAAAGAAAGTTATATGGATC 58.862 37.037 0.00 0.00 0.00 3.36
181 182 8.345565 CCCAGAAAAAGAAAGTTATATGGATCG 58.654 37.037 0.00 0.00 0.00 3.69
182 183 8.893727 CCAGAAAAAGAAAGTTATATGGATCGT 58.106 33.333 0.00 0.00 0.00 3.73
198 199 9.698309 ATATGGATCGTAAAGTAGACTTCAATG 57.302 33.333 0.00 0.00 34.61 2.82
199 200 6.338146 TGGATCGTAAAGTAGACTTCAATGG 58.662 40.000 0.00 0.00 34.61 3.16
200 201 5.234543 GGATCGTAAAGTAGACTTCAATGGC 59.765 44.000 0.00 0.00 34.61 4.40
201 202 4.501071 TCGTAAAGTAGACTTCAATGGCC 58.499 43.478 0.00 0.00 34.61 5.36
202 203 4.020928 TCGTAAAGTAGACTTCAATGGCCA 60.021 41.667 8.56 8.56 34.61 5.36
203 204 4.330074 CGTAAAGTAGACTTCAATGGCCAG 59.670 45.833 13.05 0.00 34.61 4.85
204 205 4.640771 AAAGTAGACTTCAATGGCCAGA 57.359 40.909 13.05 0.00 34.61 3.86
205 206 4.640771 AAGTAGACTTCAATGGCCAGAA 57.359 40.909 13.05 9.58 0.00 3.02
206 207 4.640771 AGTAGACTTCAATGGCCAGAAA 57.359 40.909 13.05 4.21 0.00 2.52
207 208 4.985538 AGTAGACTTCAATGGCCAGAAAA 58.014 39.130 13.05 3.81 0.00 2.29
208 209 5.574188 AGTAGACTTCAATGGCCAGAAAAT 58.426 37.500 13.05 1.13 0.00 1.82
209 210 5.649831 AGTAGACTTCAATGGCCAGAAAATC 59.350 40.000 13.05 10.51 0.00 2.17
210 211 3.441572 AGACTTCAATGGCCAGAAAATCG 59.558 43.478 13.05 0.93 0.00 3.34
211 212 3.420893 ACTTCAATGGCCAGAAAATCGA 58.579 40.909 13.05 0.00 0.00 3.59
212 213 3.191371 ACTTCAATGGCCAGAAAATCGAC 59.809 43.478 13.05 0.00 0.00 4.20
213 214 3.071874 TCAATGGCCAGAAAATCGACT 57.928 42.857 13.05 0.00 0.00 4.18
214 215 4.214986 TCAATGGCCAGAAAATCGACTA 57.785 40.909 13.05 0.00 0.00 2.59
215 216 4.584874 TCAATGGCCAGAAAATCGACTAA 58.415 39.130 13.05 0.00 0.00 2.24
216 217 4.394920 TCAATGGCCAGAAAATCGACTAAC 59.605 41.667 13.05 0.00 0.00 2.34
217 218 2.706890 TGGCCAGAAAATCGACTAACC 58.293 47.619 0.00 0.00 0.00 2.85
218 219 2.014857 GGCCAGAAAATCGACTAACCC 58.985 52.381 0.00 0.00 0.00 4.11
219 220 2.617021 GGCCAGAAAATCGACTAACCCA 60.617 50.000 0.00 0.00 0.00 4.51
220 221 3.078837 GCCAGAAAATCGACTAACCCAA 58.921 45.455 0.00 0.00 0.00 4.12
221 222 3.504520 GCCAGAAAATCGACTAACCCAAA 59.495 43.478 0.00 0.00 0.00 3.28
222 223 4.022676 GCCAGAAAATCGACTAACCCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
223 224 5.336451 GCCAGAAAATCGACTAACCCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
224 225 6.687604 CCAGAAAATCGACTAACCCAAAATT 58.312 36.000 0.00 0.00 0.00 1.82
225 226 6.586082 CCAGAAAATCGACTAACCCAAAATTG 59.414 38.462 0.00 0.00 0.00 2.32
226 227 7.367285 CAGAAAATCGACTAACCCAAAATTGA 58.633 34.615 0.00 0.00 0.00 2.57
227 228 7.865385 CAGAAAATCGACTAACCCAAAATTGAA 59.135 33.333 0.00 0.00 0.00 2.69
228 229 7.865889 AGAAAATCGACTAACCCAAAATTGAAC 59.134 33.333 0.00 0.00 0.00 3.18
229 230 6.894339 AATCGACTAACCCAAAATTGAACT 57.106 33.333 0.00 0.00 0.00 3.01
230 231 6.894339 ATCGACTAACCCAAAATTGAACTT 57.106 33.333 0.00 0.00 0.00 2.66
231 232 6.308371 TCGACTAACCCAAAATTGAACTTC 57.692 37.500 0.00 0.00 0.00 3.01
232 233 5.823570 TCGACTAACCCAAAATTGAACTTCA 59.176 36.000 0.00 0.00 0.00 3.02
233 234 6.488683 TCGACTAACCCAAAATTGAACTTCAT 59.511 34.615 0.00 0.00 0.00 2.57
234 235 6.582295 CGACTAACCCAAAATTGAACTTCATG 59.418 38.462 0.00 0.00 0.00 3.07
235 236 6.223120 ACTAACCCAAAATTGAACTTCATGC 58.777 36.000 0.00 0.00 0.00 4.06
236 237 4.686191 ACCCAAAATTGAACTTCATGCA 57.314 36.364 0.00 0.00 0.00 3.96
237 238 5.033589 ACCCAAAATTGAACTTCATGCAA 57.966 34.783 0.00 0.00 0.00 4.08
238 239 4.815846 ACCCAAAATTGAACTTCATGCAAC 59.184 37.500 0.00 0.00 0.00 4.17
239 240 5.058490 CCCAAAATTGAACTTCATGCAACT 58.942 37.500 0.00 0.00 0.00 3.16
240 241 5.528320 CCCAAAATTGAACTTCATGCAACTT 59.472 36.000 0.00 0.00 0.00 2.66
241 242 6.705381 CCCAAAATTGAACTTCATGCAACTTA 59.295 34.615 0.00 0.00 0.00 2.24
242 243 7.388500 CCCAAAATTGAACTTCATGCAACTTAT 59.612 33.333 0.00 0.00 0.00 1.73
243 244 9.421806 CCAAAATTGAACTTCATGCAACTTATA 57.578 29.630 0.00 0.00 0.00 0.98
249 250 9.625747 TTGAACTTCATGCAACTTATATATGGA 57.374 29.630 0.00 0.00 0.00 3.41
250 251 9.797642 TGAACTTCATGCAACTTATATATGGAT 57.202 29.630 0.00 0.00 0.00 3.41
257 258 9.778993 CATGCAACTTATATATGGATAAAGTGC 57.221 33.333 0.00 4.71 34.60 4.40
258 259 8.916628 TGCAACTTATATATGGATAAAGTGCA 57.083 30.769 12.98 12.98 38.04 4.57
259 260 9.519191 TGCAACTTATATATGGATAAAGTGCAT 57.481 29.630 12.98 0.00 42.10 3.96
260 261 9.778993 GCAACTTATATATGGATAAAGTGCATG 57.221 33.333 0.00 0.00 39.44 4.06
325 326 7.391148 TCACTTTATCAAAATTGCCTACTCC 57.609 36.000 0.00 0.00 0.00 3.85
326 327 6.093495 TCACTTTATCAAAATTGCCTACTCCG 59.907 38.462 0.00 0.00 0.00 4.63
327 328 4.893424 TTATCAAAATTGCCTACTCCGC 57.107 40.909 0.00 0.00 0.00 5.54
328 329 2.192664 TCAAAATTGCCTACTCCGCA 57.807 45.000 0.00 0.00 0.00 5.69
334 335 1.173043 TTGCCTACTCCGCAAATTGG 58.827 50.000 0.00 0.00 43.00 3.16
335 336 0.326595 TGCCTACTCCGCAAATTGGA 59.673 50.000 0.00 0.00 32.05 3.53
336 337 1.271652 TGCCTACTCCGCAAATTGGAA 60.272 47.619 0.00 0.00 34.44 3.53
337 338 1.132453 GCCTACTCCGCAAATTGGAAC 59.868 52.381 0.00 0.00 34.44 3.62
338 339 1.743394 CCTACTCCGCAAATTGGAACC 59.257 52.381 0.00 0.00 34.44 3.62
339 340 2.432444 CTACTCCGCAAATTGGAACCA 58.568 47.619 0.00 0.00 34.44 3.67
340 341 1.698506 ACTCCGCAAATTGGAACCAA 58.301 45.000 8.75 8.75 40.47 3.67
341 342 1.613437 ACTCCGCAAATTGGAACCAAG 59.387 47.619 11.88 0.43 39.47 3.61
342 343 0.316841 TCCGCAAATTGGAACCAAGC 59.683 50.000 11.88 8.84 39.47 4.01
343 344 0.670239 CCGCAAATTGGAACCAAGCC 60.670 55.000 11.88 0.42 39.47 4.35
344 345 0.318120 CGCAAATTGGAACCAAGCCT 59.682 50.000 11.88 0.00 39.47 4.58
345 346 1.669795 CGCAAATTGGAACCAAGCCTC 60.670 52.381 11.88 1.72 39.47 4.70
346 347 1.344114 GCAAATTGGAACCAAGCCTCA 59.656 47.619 11.88 0.00 39.47 3.86
347 348 2.027837 GCAAATTGGAACCAAGCCTCAT 60.028 45.455 11.88 0.00 39.47 2.90
348 349 3.853475 CAAATTGGAACCAAGCCTCATC 58.147 45.455 11.88 0.00 39.47 2.92
349 350 3.463048 AATTGGAACCAAGCCTCATCT 57.537 42.857 11.88 0.00 39.47 2.90
350 351 4.591321 AATTGGAACCAAGCCTCATCTA 57.409 40.909 11.88 0.00 39.47 1.98
351 352 4.803329 ATTGGAACCAAGCCTCATCTAT 57.197 40.909 11.88 0.00 39.47 1.98
352 353 3.565764 TGGAACCAAGCCTCATCTATG 57.434 47.619 0.00 0.00 0.00 2.23
353 354 2.846206 TGGAACCAAGCCTCATCTATGT 59.154 45.455 0.00 0.00 0.00 2.29
354 355 3.266772 TGGAACCAAGCCTCATCTATGTT 59.733 43.478 0.00 0.00 0.00 2.71
355 356 3.629398 GGAACCAAGCCTCATCTATGTTG 59.371 47.826 0.00 0.00 0.00 3.33
356 357 2.648059 ACCAAGCCTCATCTATGTTGC 58.352 47.619 0.00 0.00 0.00 4.17
357 358 2.240667 ACCAAGCCTCATCTATGTTGCT 59.759 45.455 4.05 4.05 37.33 3.91
358 359 2.617308 CCAAGCCTCATCTATGTTGCTG 59.383 50.000 8.85 5.20 36.43 4.41
362 363 3.452264 AGCCTCATCTATGTTGCTGTGTA 59.548 43.478 7.75 0.00 35.54 2.90
391 392 4.697756 TGGAACCAAGCCTCCGCG 62.698 66.667 0.00 0.00 41.18 6.46
398 399 4.830765 AAGCCTCCGCGCGCATTA 62.831 61.111 32.61 14.44 41.18 1.90
399 400 4.830765 AGCCTCCGCGCGCATTAA 62.831 61.111 32.61 11.70 41.18 1.40
453 454 0.389391 ATACGATCAAGCCTGACCGG 59.611 55.000 3.69 0.00 43.47 5.28
467 468 3.556213 CCTGACCGGAAATGTTGTACTGA 60.556 47.826 9.46 0.00 33.16 3.41
468 469 3.395639 TGACCGGAAATGTTGTACTGAC 58.604 45.455 9.46 0.00 0.00 3.51
469 470 3.070446 TGACCGGAAATGTTGTACTGACT 59.930 43.478 9.46 0.00 0.00 3.41
470 471 4.281435 TGACCGGAAATGTTGTACTGACTA 59.719 41.667 9.46 0.00 0.00 2.59
471 472 4.817517 ACCGGAAATGTTGTACTGACTAG 58.182 43.478 9.46 0.00 0.00 2.57
472 473 4.282703 ACCGGAAATGTTGTACTGACTAGT 59.717 41.667 9.46 0.00 40.99 2.57
474 475 5.120208 CCGGAAATGTTGTACTGACTAGTTG 59.880 44.000 0.00 0.00 38.36 3.16
475 476 5.694910 CGGAAATGTTGTACTGACTAGTTGT 59.305 40.000 0.00 2.18 38.36 3.32
505 513 1.610038 TGAGTCAACTTTGGCATGCTG 59.390 47.619 18.92 6.85 34.61 4.41
516 532 1.238439 GGCATGCTGTATATGGCGTT 58.762 50.000 18.92 0.00 40.54 4.84
535 551 4.034510 GCGTTGCTAGCTTTGAATCATAGT 59.965 41.667 17.23 0.00 0.00 2.12
536 552 5.234329 GCGTTGCTAGCTTTGAATCATAGTA 59.766 40.000 17.23 0.00 0.00 1.82
537 553 6.563010 GCGTTGCTAGCTTTGAATCATAGTAG 60.563 42.308 17.23 4.89 0.00 2.57
560 576 2.238521 GCCAAGATCTGTTTGGGTCAA 58.761 47.619 12.80 0.00 44.21 3.18
607 623 3.584406 ATAGCTAGTGCGATGGACATC 57.416 47.619 0.00 2.22 45.42 3.06
649 665 2.103432 TCCAAGTCGGTAAAGCAGACAA 59.897 45.455 0.00 0.00 43.32 3.18
653 669 4.273148 AGTCGGTAAAGCAGACAATTCT 57.727 40.909 0.00 0.00 43.32 2.40
654 670 4.246458 AGTCGGTAAAGCAGACAATTCTC 58.754 43.478 0.00 0.00 43.32 2.87
656 672 2.678336 CGGTAAAGCAGACAATTCTCCC 59.322 50.000 0.00 0.00 0.00 4.30
657 673 3.619979 CGGTAAAGCAGACAATTCTCCCT 60.620 47.826 0.00 0.00 0.00 4.20
658 674 3.942115 GGTAAAGCAGACAATTCTCCCTC 59.058 47.826 0.00 0.00 0.00 4.30
659 675 2.797177 AAGCAGACAATTCTCCCTCC 57.203 50.000 0.00 0.00 0.00 4.30
660 676 0.539051 AGCAGACAATTCTCCCTCCG 59.461 55.000 0.00 0.00 0.00 4.63
661 677 0.250513 GCAGACAATTCTCCCTCCGT 59.749 55.000 0.00 0.00 0.00 4.69
662 678 1.740718 GCAGACAATTCTCCCTCCGTC 60.741 57.143 0.00 0.00 0.00 4.79
663 679 1.134670 CAGACAATTCTCCCTCCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
664 680 0.178301 GACAATTCTCCCTCCGTCCC 59.822 60.000 0.00 0.00 0.00 4.46
665 681 0.546747 ACAATTCTCCCTCCGTCCCA 60.547 55.000 0.00 0.00 0.00 4.37
666 682 0.839946 CAATTCTCCCTCCGTCCCAT 59.160 55.000 0.00 0.00 0.00 4.00
667 683 2.047061 CAATTCTCCCTCCGTCCCATA 58.953 52.381 0.00 0.00 0.00 2.74
668 684 2.438021 CAATTCTCCCTCCGTCCCATAA 59.562 50.000 0.00 0.00 0.00 1.90
669 685 2.489528 TTCTCCCTCCGTCCCATAAT 57.510 50.000 0.00 0.00 0.00 1.28
670 686 3.623466 TTCTCCCTCCGTCCCATAATA 57.377 47.619 0.00 0.00 0.00 0.98
671 687 3.847042 TCTCCCTCCGTCCCATAATAT 57.153 47.619 0.00 0.00 0.00 1.28
672 688 4.959522 TCTCCCTCCGTCCCATAATATA 57.040 45.455 0.00 0.00 0.00 0.86
673 689 5.279562 TCTCCCTCCGTCCCATAATATAA 57.720 43.478 0.00 0.00 0.00 0.98
674 690 5.269991 TCTCCCTCCGTCCCATAATATAAG 58.730 45.833 0.00 0.00 0.00 1.73
675 691 5.015924 TCTCCCTCCGTCCCATAATATAAGA 59.984 44.000 0.00 0.00 0.00 2.10
676 692 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
677 693 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
678 694 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
679 695 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
680 696 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
681 697 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
682 698 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
683 699 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
684 700 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
685 701 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
686 702 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
687 703 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
688 704 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
689 705 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
692 708 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
693 709 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
694 710 3.527533 AGAGCGTTTTTGACACTACACA 58.472 40.909 0.00 0.00 0.00 3.72
695 711 3.936453 AGAGCGTTTTTGACACTACACAA 59.064 39.130 0.00 0.00 0.00 3.33
696 712 4.034048 AGAGCGTTTTTGACACTACACAAG 59.966 41.667 0.00 0.00 0.00 3.16
697 713 3.687698 AGCGTTTTTGACACTACACAAGT 59.312 39.130 0.00 0.00 39.81 3.16
769 785 1.603326 CCACCAAACATTTTGCCTTGC 59.397 47.619 0.00 0.00 0.00 4.01
770 786 1.261089 CACCAAACATTTTGCCTTGCG 59.739 47.619 0.00 0.00 0.00 4.85
771 787 0.867086 CCAAACATTTTGCCTTGCGG 59.133 50.000 0.00 0.00 0.00 5.69
772 788 1.539929 CCAAACATTTTGCCTTGCGGA 60.540 47.619 0.00 0.00 0.00 5.54
773 789 1.794116 CAAACATTTTGCCTTGCGGAG 59.206 47.619 0.00 0.00 0.00 4.63
795 811 9.400638 CGGAGCTTCTGTAAACTAATATAAGAG 57.599 37.037 0.00 0.00 0.00 2.85
848 864 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
859 883 3.513119 AGTTTACGGAGGGAGTAAGTTCC 59.487 47.826 0.00 0.00 35.75 3.62
881 905 2.729194 ACGGAAGAGTCTCTGCTATGT 58.271 47.619 7.82 2.00 0.00 2.29
882 906 3.887352 ACGGAAGAGTCTCTGCTATGTA 58.113 45.455 7.82 0.00 0.00 2.29
883 907 3.628487 ACGGAAGAGTCTCTGCTATGTAC 59.372 47.826 7.82 0.00 0.00 2.90
884 908 3.303461 CGGAAGAGTCTCTGCTATGTACG 60.303 52.174 7.82 0.00 0.00 3.67
898 922 6.483687 TGCTATGTACGCTCGTGTATATATG 58.516 40.000 5.05 4.63 30.97 1.78
958 989 1.845809 CGTGCAAAGCTGAGACCACC 61.846 60.000 0.00 0.00 0.00 4.61
959 990 0.536006 GTGCAAAGCTGAGACCACCT 60.536 55.000 0.00 0.00 0.00 4.00
960 991 0.183492 TGCAAAGCTGAGACCACCTT 59.817 50.000 0.00 0.00 0.00 3.50
961 992 0.595095 GCAAAGCTGAGACCACCTTG 59.405 55.000 0.00 0.00 0.00 3.61
962 993 1.815408 GCAAAGCTGAGACCACCTTGA 60.815 52.381 0.00 0.00 0.00 3.02
963 994 2.149578 CAAAGCTGAGACCACCTTGAG 58.850 52.381 0.00 0.00 0.00 3.02
964 995 0.036022 AAGCTGAGACCACCTTGAGC 59.964 55.000 0.00 0.00 33.29 4.26
965 996 1.123861 AGCTGAGACCACCTTGAGCA 61.124 55.000 0.00 0.00 34.71 4.26
966 997 0.673022 GCTGAGACCACCTTGAGCAG 60.673 60.000 0.00 0.00 33.32 4.24
967 998 0.673022 CTGAGACCACCTTGAGCAGC 60.673 60.000 0.00 0.00 0.00 5.25
968 999 1.123861 TGAGACCACCTTGAGCAGCT 61.124 55.000 0.00 0.00 0.00 4.24
969 1000 0.390998 GAGACCACCTTGAGCAGCTC 60.391 60.000 16.21 16.21 0.00 4.09
970 1001 1.123861 AGACCACCTTGAGCAGCTCA 61.124 55.000 21.85 21.85 38.87 4.26
971 1002 0.035630 GACCACCTTGAGCAGCTCAT 60.036 55.000 25.94 9.89 40.39 2.90
972 1003 1.208052 GACCACCTTGAGCAGCTCATA 59.792 52.381 25.94 15.02 40.39 2.15
973 1004 1.209019 ACCACCTTGAGCAGCTCATAG 59.791 52.381 25.94 22.14 40.39 2.23
974 1005 1.483827 CCACCTTGAGCAGCTCATAGA 59.516 52.381 25.94 10.47 40.39 1.98
975 1006 2.548875 CACCTTGAGCAGCTCATAGAC 58.451 52.381 25.94 0.00 40.39 2.59
976 1007 2.093816 CACCTTGAGCAGCTCATAGACA 60.094 50.000 25.94 9.70 40.39 3.41
977 1008 2.093764 ACCTTGAGCAGCTCATAGACAC 60.094 50.000 25.94 0.00 40.39 3.67
978 1009 2.548875 CTTGAGCAGCTCATAGACACC 58.451 52.381 25.94 0.00 40.39 4.16
979 1010 1.560505 TGAGCAGCTCATAGACACCA 58.439 50.000 21.85 0.00 35.39 4.17
980 1011 1.205655 TGAGCAGCTCATAGACACCAC 59.794 52.381 21.85 0.00 35.39 4.16
981 1012 1.205655 GAGCAGCTCATAGACACCACA 59.794 52.381 18.17 0.00 0.00 4.17
982 1013 1.066573 AGCAGCTCATAGACACCACAC 60.067 52.381 0.00 0.00 0.00 3.82
983 1014 2.009042 GCAGCTCATAGACACCACACC 61.009 57.143 0.00 0.00 0.00 4.16
984 1015 1.276138 CAGCTCATAGACACCACACCA 59.724 52.381 0.00 0.00 0.00 4.17
985 1016 1.552337 AGCTCATAGACACCACACCAG 59.448 52.381 0.00 0.00 0.00 4.00
1036 1067 0.540830 AGGAGACGACCTGAAGCTGT 60.541 55.000 0.00 0.00 39.01 4.40
1158 1189 3.146913 GAGCTGCTCCTCCGCTCT 61.147 66.667 18.80 0.00 45.00 4.09
1343 2446 1.709760 TCGTCGACGACACGGTATC 59.290 57.895 34.97 0.00 44.22 2.24
1346 2449 1.258720 CGTCGACGACACGGTATCATA 59.741 52.381 33.35 0.00 43.02 2.15
1347 2450 2.096565 CGTCGACGACACGGTATCATAT 60.097 50.000 33.35 0.00 43.02 1.78
1349 2452 3.904824 GTCGACGACACGGTATCATATTC 59.095 47.826 22.66 0.00 32.09 1.75
1350 2453 3.560896 TCGACGACACGGTATCATATTCA 59.439 43.478 0.00 0.00 0.00 2.57
1354 2457 4.523173 ACGACACGGTATCATATTCATCCT 59.477 41.667 0.00 0.00 0.00 3.24
1355 2458 5.096169 CGACACGGTATCATATTCATCCTC 58.904 45.833 0.00 0.00 0.00 3.71
1356 2459 5.407407 ACACGGTATCATATTCATCCTCC 57.593 43.478 0.00 0.00 0.00 4.30
1367 2476 8.185506 TCATATTCATCCTCCATTTCATTTGG 57.814 34.615 0.00 0.00 35.45 3.28
1379 2488 1.956297 TCATTTGGTCCGTCGTGTTT 58.044 45.000 0.00 0.00 0.00 2.83
1380 2489 3.109044 TCATTTGGTCCGTCGTGTTTA 57.891 42.857 0.00 0.00 0.00 2.01
1381 2490 2.801679 TCATTTGGTCCGTCGTGTTTAC 59.198 45.455 0.00 0.00 0.00 2.01
1382 2491 1.580815 TTTGGTCCGTCGTGTTTACC 58.419 50.000 0.00 0.00 0.00 2.85
1384 2493 0.752054 TGGTCCGTCGTGTTTACCTT 59.248 50.000 0.00 0.00 0.00 3.50
1385 2494 1.142474 GGTCCGTCGTGTTTACCTTG 58.858 55.000 0.00 0.00 0.00 3.61
1387 2496 1.523934 GTCCGTCGTGTTTACCTTGTG 59.476 52.381 0.00 0.00 0.00 3.33
1403 2512 2.857186 TGTGGCATTGAGCTCTTGTA 57.143 45.000 16.19 4.16 44.79 2.41
1676 2806 2.656069 AAGACCATCGACCCCGTGG 61.656 63.158 0.36 0.36 40.38 4.94
1677 2807 3.072468 GACCATCGACCCCGTGGA 61.072 66.667 8.96 0.00 38.99 4.02
1794 2924 1.000506 GTCCTTGACAACGTAGGCTCA 59.999 52.381 0.00 0.00 32.09 4.26
1795 2925 1.899814 TCCTTGACAACGTAGGCTCAT 59.100 47.619 0.00 0.00 0.00 2.90
1887 3017 3.243367 TGGCTTTTCTCGTTGGAATTGTG 60.243 43.478 0.00 0.00 0.00 3.33
1929 3059 2.991190 ACGTAGCGTTCACCATTTAGTG 59.009 45.455 0.00 0.00 36.35 2.74
2065 3201 7.997107 ATTTTATTGACTCGTAATGTCGCTA 57.003 32.000 0.00 0.00 37.26 4.26
2071 3207 4.083164 TGACTCGTAATGTCGCTACAAGAA 60.083 41.667 0.00 0.00 39.58 2.52
2127 3263 1.229428 CGACTGGAATGCACACAACT 58.771 50.000 0.00 0.00 0.00 3.16
2145 3281 3.852203 CATCATCGCGCGCACACA 61.852 61.111 32.61 12.34 0.00 3.72
2146 3282 3.853330 ATCATCGCGCGCACACAC 61.853 61.111 32.61 0.00 0.00 3.82
2152 3288 2.353376 GCGCGCACACACACAAAT 60.353 55.556 29.10 0.00 0.00 2.32
2180 3316 7.785033 ACAAAATTGAAACCTCTGAAAGTCAT 58.215 30.769 0.00 0.00 33.76 3.06
2184 3320 4.058124 TGAAACCTCTGAAAGTCATGTCG 58.942 43.478 0.00 0.00 33.76 4.35
2186 3322 4.336889 AACCTCTGAAAGTCATGTCGAA 57.663 40.909 0.00 0.00 33.76 3.71
2187 3323 3.919216 ACCTCTGAAAGTCATGTCGAAG 58.081 45.455 0.00 0.00 33.76 3.79
2188 3324 3.322254 ACCTCTGAAAGTCATGTCGAAGT 59.678 43.478 0.00 0.00 33.76 3.01
2215 3356 4.869215 TCAAGCATACAACAACAACCATG 58.131 39.130 0.00 0.00 0.00 3.66
2222 3363 6.680810 CATACAACAACAACCATGAACATCT 58.319 36.000 0.00 0.00 0.00 2.90
2235 3376 2.569853 TGAACATCTACCATCACCGGTT 59.430 45.455 2.97 0.00 40.67 4.44
2239 3380 0.687920 TCTACCATCACCGGTTGCAA 59.312 50.000 2.97 0.00 40.67 4.08
2243 3384 1.172180 CCATCACCGGTTGCAACACT 61.172 55.000 29.55 9.32 0.00 3.55
2271 3412 7.553760 GGAATGTGGGATAAGCATTTCAAAAAT 59.446 33.333 0.00 0.00 33.56 1.82
2361 3502 3.692690 TGGGTTTTCTCCCCGATTAAAG 58.307 45.455 0.00 0.00 45.86 1.85
2437 3578 7.725818 TGTACAAATTTTACGGACACATACA 57.274 32.000 0.00 0.00 0.00 2.29
2508 3649 8.536175 TGGATGTCCTCGCAAAATATGTATATA 58.464 33.333 0.09 0.00 36.82 0.86
2599 3740 1.134367 CCGAGTGGCTAGTGATTTCGA 59.866 52.381 0.00 0.00 0.00 3.71
2624 3765 3.217242 GGCGACGATGGCTATTGAT 57.783 52.632 3.98 0.00 0.00 2.57
2632 3773 4.708177 ACGATGGCTATTGATGTTTAGCT 58.292 39.130 3.98 0.00 40.52 3.32
2638 3779 5.123820 TGGCTATTGATGTTTAGCTGTTGTC 59.876 40.000 0.00 0.00 40.52 3.18
2658 3799 1.152756 AACCCGCTTTGGAGCTTGT 60.153 52.632 0.00 0.00 46.96 3.16
2662 3803 1.630244 CCGCTTTGGAGCTTGTCTCG 61.630 60.000 0.00 0.00 46.96 4.04
2749 3890 3.064324 GTGCCCGGCAATGCTCTT 61.064 61.111 15.39 0.00 41.47 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.522830 GTTTTCCAGGTGAATGAGATCAAATTA 58.477 33.333 0.00 0.00 31.67 1.40
2 3 7.015487 TGTTTTCCAGGTGAATGAGATCAAATT 59.985 33.333 0.00 0.00 31.67 1.82
4 5 5.832595 TGTTTTCCAGGTGAATGAGATCAAA 59.167 36.000 0.00 0.00 31.67 2.69
5 6 5.384336 TGTTTTCCAGGTGAATGAGATCAA 58.616 37.500 0.00 0.00 31.67 2.57
6 7 4.984295 TGTTTTCCAGGTGAATGAGATCA 58.016 39.130 0.00 0.00 31.67 2.92
7 8 5.707298 TCTTGTTTTCCAGGTGAATGAGATC 59.293 40.000 0.00 0.00 31.67 2.75
8 9 5.634118 TCTTGTTTTCCAGGTGAATGAGAT 58.366 37.500 0.00 0.00 31.67 2.75
9 10 5.047566 TCTTGTTTTCCAGGTGAATGAGA 57.952 39.130 0.00 0.00 31.67 3.27
10 11 5.391310 CGATCTTGTTTTCCAGGTGAATGAG 60.391 44.000 0.00 0.00 31.67 2.90
11 12 4.455533 CGATCTTGTTTTCCAGGTGAATGA 59.544 41.667 0.00 0.00 31.67 2.57
12 13 4.379813 CCGATCTTGTTTTCCAGGTGAATG 60.380 45.833 0.00 0.00 31.67 2.67
13 14 3.758554 CCGATCTTGTTTTCCAGGTGAAT 59.241 43.478 0.00 0.00 31.67 2.57
14 15 3.146066 CCGATCTTGTTTTCCAGGTGAA 58.854 45.455 0.00 0.00 0.00 3.18
15 16 2.370519 TCCGATCTTGTTTTCCAGGTGA 59.629 45.455 0.00 0.00 0.00 4.02
16 17 2.778299 TCCGATCTTGTTTTCCAGGTG 58.222 47.619 0.00 0.00 0.00 4.00
17 18 3.721087 ATCCGATCTTGTTTTCCAGGT 57.279 42.857 0.00 0.00 0.00 4.00
18 19 6.204882 GGTTATATCCGATCTTGTTTTCCAGG 59.795 42.308 0.00 0.00 0.00 4.45
19 20 6.204882 GGGTTATATCCGATCTTGTTTTCCAG 59.795 42.308 0.00 0.00 0.00 3.86
20 21 6.059484 GGGTTATATCCGATCTTGTTTTCCA 58.941 40.000 0.00 0.00 0.00 3.53
21 22 6.017357 GTGGGTTATATCCGATCTTGTTTTCC 60.017 42.308 0.00 0.00 0.00 3.13
22 23 6.292703 CGTGGGTTATATCCGATCTTGTTTTC 60.293 42.308 0.00 0.00 0.00 2.29
23 24 5.526111 CGTGGGTTATATCCGATCTTGTTTT 59.474 40.000 0.00 0.00 0.00 2.43
24 25 5.054477 CGTGGGTTATATCCGATCTTGTTT 58.946 41.667 0.00 0.00 0.00 2.83
25 26 4.100498 ACGTGGGTTATATCCGATCTTGTT 59.900 41.667 0.00 0.00 0.00 2.83
26 27 3.640029 ACGTGGGTTATATCCGATCTTGT 59.360 43.478 0.00 0.00 0.00 3.16
27 28 4.235360 GACGTGGGTTATATCCGATCTTG 58.765 47.826 0.00 0.00 0.00 3.02
28 29 3.893200 TGACGTGGGTTATATCCGATCTT 59.107 43.478 0.00 0.00 0.00 2.40
29 30 3.493334 TGACGTGGGTTATATCCGATCT 58.507 45.455 0.00 0.00 0.00 2.75
30 31 3.834610 CTGACGTGGGTTATATCCGATC 58.165 50.000 0.00 0.00 0.00 3.69
31 32 2.029290 GCTGACGTGGGTTATATCCGAT 60.029 50.000 0.00 0.00 0.00 4.18
32 33 1.338973 GCTGACGTGGGTTATATCCGA 59.661 52.381 0.00 0.00 0.00 4.55
33 34 1.067974 TGCTGACGTGGGTTATATCCG 59.932 52.381 0.00 0.00 0.00 4.18
34 35 2.159014 TGTGCTGACGTGGGTTATATCC 60.159 50.000 0.00 0.00 0.00 2.59
35 36 2.864343 GTGTGCTGACGTGGGTTATATC 59.136 50.000 0.00 0.00 0.00 1.63
36 37 2.235155 TGTGTGCTGACGTGGGTTATAT 59.765 45.455 0.00 0.00 0.00 0.86
37 38 1.619332 TGTGTGCTGACGTGGGTTATA 59.381 47.619 0.00 0.00 0.00 0.98
38 39 0.394938 TGTGTGCTGACGTGGGTTAT 59.605 50.000 0.00 0.00 0.00 1.89
39 40 0.531090 GTGTGTGCTGACGTGGGTTA 60.531 55.000 0.00 0.00 0.00 2.85
40 41 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
41 42 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
42 43 2.203001 TGTGTGTGCTGACGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
43 44 1.159713 ATGTGTGTGTGCTGACGTGG 61.160 55.000 0.00 0.00 0.00 4.94
44 45 0.233074 GATGTGTGTGTGCTGACGTG 59.767 55.000 0.00 0.00 0.00 4.49
45 46 0.104855 AGATGTGTGTGTGCTGACGT 59.895 50.000 0.00 0.00 0.00 4.34
46 47 1.220529 AAGATGTGTGTGTGCTGACG 58.779 50.000 0.00 0.00 0.00 4.35
47 48 4.033358 GCTATAAGATGTGTGTGTGCTGAC 59.967 45.833 0.00 0.00 0.00 3.51
48 49 4.183865 GCTATAAGATGTGTGTGTGCTGA 58.816 43.478 0.00 0.00 0.00 4.26
49 50 3.934579 TGCTATAAGATGTGTGTGTGCTG 59.065 43.478 0.00 0.00 0.00 4.41
50 51 4.206477 TGCTATAAGATGTGTGTGTGCT 57.794 40.909 0.00 0.00 0.00 4.40
51 52 4.571984 TGATGCTATAAGATGTGTGTGTGC 59.428 41.667 0.00 0.00 0.00 4.57
52 53 5.581874 TGTGATGCTATAAGATGTGTGTGTG 59.418 40.000 0.00 0.00 0.00 3.82
53 54 5.733676 TGTGATGCTATAAGATGTGTGTGT 58.266 37.500 0.00 0.00 0.00 3.72
54 55 6.073385 GGATGTGATGCTATAAGATGTGTGTG 60.073 42.308 0.00 0.00 0.00 3.82
55 56 5.994054 GGATGTGATGCTATAAGATGTGTGT 59.006 40.000 0.00 0.00 0.00 3.72
56 57 5.993441 TGGATGTGATGCTATAAGATGTGTG 59.007 40.000 0.00 0.00 0.00 3.82
57 58 6.178607 TGGATGTGATGCTATAAGATGTGT 57.821 37.500 0.00 0.00 0.00 3.72
58 59 6.228995 ACTGGATGTGATGCTATAAGATGTG 58.771 40.000 0.00 0.00 0.00 3.21
59 60 6.430962 ACTGGATGTGATGCTATAAGATGT 57.569 37.500 0.00 0.00 0.00 3.06
62 63 8.676396 ATAGCCACTGGATGTGATGCTATAAGA 61.676 40.741 13.69 0.00 45.97 2.10
63 64 6.575847 ATAGCCACTGGATGTGATGCTATAAG 60.576 42.308 13.69 0.00 45.97 1.73
64 65 5.249163 ATAGCCACTGGATGTGATGCTATAA 59.751 40.000 13.69 0.00 45.97 0.98
65 66 4.779489 ATAGCCACTGGATGTGATGCTATA 59.221 41.667 13.69 0.00 45.97 1.31
73 74 4.780815 TCCTTTTATAGCCACTGGATGTG 58.219 43.478 0.00 0.00 45.80 3.21
74 75 4.475016 ACTCCTTTTATAGCCACTGGATGT 59.525 41.667 0.00 0.00 0.00 3.06
75 76 5.041191 ACTCCTTTTATAGCCACTGGATG 57.959 43.478 0.00 0.00 0.00 3.51
76 77 8.543774 CATATACTCCTTTTATAGCCACTGGAT 58.456 37.037 0.00 0.00 0.00 3.41
77 78 7.733047 TCATATACTCCTTTTATAGCCACTGGA 59.267 37.037 0.00 0.00 0.00 3.86
78 79 7.907389 TCATATACTCCTTTTATAGCCACTGG 58.093 38.462 0.00 0.00 0.00 4.00
79 80 8.589338 ACTCATATACTCCTTTTATAGCCACTG 58.411 37.037 0.00 0.00 0.00 3.66
80 81 8.728596 ACTCATATACTCCTTTTATAGCCACT 57.271 34.615 0.00 0.00 0.00 4.00
81 82 9.425577 GAACTCATATACTCCTTTTATAGCCAC 57.574 37.037 0.00 0.00 0.00 5.01
82 83 9.381038 AGAACTCATATACTCCTTTTATAGCCA 57.619 33.333 0.00 0.00 0.00 4.75
89 90 9.959721 TTTTGCTAGAACTCATATACTCCTTTT 57.040 29.630 0.00 0.00 0.00 2.27
90 91 9.384764 GTTTTGCTAGAACTCATATACTCCTTT 57.615 33.333 0.00 0.00 0.00 3.11
91 92 8.763601 AGTTTTGCTAGAACTCATATACTCCTT 58.236 33.333 0.00 0.00 32.04 3.36
92 93 8.200792 CAGTTTTGCTAGAACTCATATACTCCT 58.799 37.037 0.00 0.00 35.26 3.69
93 94 7.982354 ACAGTTTTGCTAGAACTCATATACTCC 59.018 37.037 0.00 0.00 35.26 3.85
94 95 8.934507 ACAGTTTTGCTAGAACTCATATACTC 57.065 34.615 0.00 0.00 35.26 2.59
98 99 9.944376 TTTCTACAGTTTTGCTAGAACTCATAT 57.056 29.630 0.00 0.00 35.26 1.78
99 100 9.772973 TTTTCTACAGTTTTGCTAGAACTCATA 57.227 29.630 0.00 0.00 35.26 2.15
100 101 8.677148 TTTTCTACAGTTTTGCTAGAACTCAT 57.323 30.769 0.00 0.00 35.26 2.90
101 102 8.500753 TTTTTCTACAGTTTTGCTAGAACTCA 57.499 30.769 0.00 0.00 35.26 3.41
104 105 9.331106 GCTATTTTTCTACAGTTTTGCTAGAAC 57.669 33.333 0.00 0.00 32.12 3.01
105 106 8.512138 GGCTATTTTTCTACAGTTTTGCTAGAA 58.488 33.333 0.00 0.00 31.31 2.10
106 107 7.120726 GGGCTATTTTTCTACAGTTTTGCTAGA 59.879 37.037 0.00 0.00 0.00 2.43
107 108 7.094377 TGGGCTATTTTTCTACAGTTTTGCTAG 60.094 37.037 0.00 0.00 0.00 3.42
108 109 6.717540 TGGGCTATTTTTCTACAGTTTTGCTA 59.282 34.615 0.00 0.00 0.00 3.49
109 110 5.538433 TGGGCTATTTTTCTACAGTTTTGCT 59.462 36.000 0.00 0.00 0.00 3.91
110 111 5.778862 TGGGCTATTTTTCTACAGTTTTGC 58.221 37.500 0.00 0.00 0.00 3.68
111 112 8.547894 GTTTTGGGCTATTTTTCTACAGTTTTG 58.452 33.333 0.00 0.00 0.00 2.44
112 113 8.261522 TGTTTTGGGCTATTTTTCTACAGTTTT 58.738 29.630 0.00 0.00 0.00 2.43
113 114 7.787028 TGTTTTGGGCTATTTTTCTACAGTTT 58.213 30.769 0.00 0.00 0.00 2.66
114 115 7.354751 TGTTTTGGGCTATTTTTCTACAGTT 57.645 32.000 0.00 0.00 0.00 3.16
115 116 6.969993 TGTTTTGGGCTATTTTTCTACAGT 57.030 33.333 0.00 0.00 0.00 3.55
116 117 7.206687 TGTTGTTTTGGGCTATTTTTCTACAG 58.793 34.615 0.00 0.00 0.00 2.74
117 118 7.113658 TGTTGTTTTGGGCTATTTTTCTACA 57.886 32.000 0.00 0.00 0.00 2.74
118 119 9.135843 GTATGTTGTTTTGGGCTATTTTTCTAC 57.864 33.333 0.00 0.00 0.00 2.59
119 120 8.861086 TGTATGTTGTTTTGGGCTATTTTTCTA 58.139 29.630 0.00 0.00 0.00 2.10
120 121 7.731054 TGTATGTTGTTTTGGGCTATTTTTCT 58.269 30.769 0.00 0.00 0.00 2.52
121 122 7.870445 TCTGTATGTTGTTTTGGGCTATTTTTC 59.130 33.333 0.00 0.00 0.00 2.29
122 123 7.655732 GTCTGTATGTTGTTTTGGGCTATTTTT 59.344 33.333 0.00 0.00 0.00 1.94
123 124 7.151976 GTCTGTATGTTGTTTTGGGCTATTTT 58.848 34.615 0.00 0.00 0.00 1.82
124 125 6.295067 GGTCTGTATGTTGTTTTGGGCTATTT 60.295 38.462 0.00 0.00 0.00 1.40
125 126 5.185056 GGTCTGTATGTTGTTTTGGGCTATT 59.815 40.000 0.00 0.00 0.00 1.73
126 127 4.705023 GGTCTGTATGTTGTTTTGGGCTAT 59.295 41.667 0.00 0.00 0.00 2.97
127 128 4.076394 GGTCTGTATGTTGTTTTGGGCTA 58.924 43.478 0.00 0.00 0.00 3.93
128 129 2.890945 GGTCTGTATGTTGTTTTGGGCT 59.109 45.455 0.00 0.00 0.00 5.19
129 130 2.625790 TGGTCTGTATGTTGTTTTGGGC 59.374 45.455 0.00 0.00 0.00 5.36
130 131 3.305335 GCTGGTCTGTATGTTGTTTTGGG 60.305 47.826 0.00 0.00 0.00 4.12
131 132 3.317711 TGCTGGTCTGTATGTTGTTTTGG 59.682 43.478 0.00 0.00 0.00 3.28
132 133 4.539870 CTGCTGGTCTGTATGTTGTTTTG 58.460 43.478 0.00 0.00 0.00 2.44
133 134 3.004734 GCTGCTGGTCTGTATGTTGTTTT 59.995 43.478 0.00 0.00 0.00 2.43
134 135 2.554032 GCTGCTGGTCTGTATGTTGTTT 59.446 45.455 0.00 0.00 0.00 2.83
135 136 2.154462 GCTGCTGGTCTGTATGTTGTT 58.846 47.619 0.00 0.00 0.00 2.83
136 137 1.611673 GGCTGCTGGTCTGTATGTTGT 60.612 52.381 0.00 0.00 0.00 3.32
137 138 1.089920 GGCTGCTGGTCTGTATGTTG 58.910 55.000 0.00 0.00 0.00 3.33
138 139 0.035056 GGGCTGCTGGTCTGTATGTT 60.035 55.000 0.00 0.00 0.00 2.71
139 140 1.200760 TGGGCTGCTGGTCTGTATGT 61.201 55.000 0.00 0.00 0.00 2.29
140 141 0.463295 CTGGGCTGCTGGTCTGTATG 60.463 60.000 0.00 0.00 0.00 2.39
141 142 0.618680 TCTGGGCTGCTGGTCTGTAT 60.619 55.000 0.00 0.00 0.00 2.29
142 143 0.835971 TTCTGGGCTGCTGGTCTGTA 60.836 55.000 0.00 0.00 0.00 2.74
143 144 1.708993 TTTCTGGGCTGCTGGTCTGT 61.709 55.000 0.00 0.00 0.00 3.41
144 145 0.538057 TTTTCTGGGCTGCTGGTCTG 60.538 55.000 0.00 0.00 0.00 3.51
145 146 0.185901 TTTTTCTGGGCTGCTGGTCT 59.814 50.000 0.00 0.00 0.00 3.85
146 147 0.600057 CTTTTTCTGGGCTGCTGGTC 59.400 55.000 0.00 0.00 0.00 4.02
147 148 0.185901 TCTTTTTCTGGGCTGCTGGT 59.814 50.000 0.00 0.00 0.00 4.00
148 149 1.331214 TTCTTTTTCTGGGCTGCTGG 58.669 50.000 0.00 0.00 0.00 4.85
149 150 2.363359 ACTTTCTTTTTCTGGGCTGCTG 59.637 45.455 0.00 0.00 0.00 4.41
150 151 2.670939 ACTTTCTTTTTCTGGGCTGCT 58.329 42.857 0.00 0.00 0.00 4.24
151 152 3.459232 AACTTTCTTTTTCTGGGCTGC 57.541 42.857 0.00 0.00 0.00 5.25
152 153 7.122650 TCCATATAACTTTCTTTTTCTGGGCTG 59.877 37.037 0.00 0.00 0.00 4.85
153 154 7.182060 TCCATATAACTTTCTTTTTCTGGGCT 58.818 34.615 0.00 0.00 0.00 5.19
154 155 7.404671 TCCATATAACTTTCTTTTTCTGGGC 57.595 36.000 0.00 0.00 0.00 5.36
155 156 8.345565 CGATCCATATAACTTTCTTTTTCTGGG 58.654 37.037 0.00 0.00 0.00 4.45
156 157 8.893727 ACGATCCATATAACTTTCTTTTTCTGG 58.106 33.333 0.00 0.00 0.00 3.86
172 173 9.698309 CATTGAAGTCTACTTTACGATCCATAT 57.302 33.333 0.00 0.00 36.11 1.78
173 174 8.141909 CCATTGAAGTCTACTTTACGATCCATA 58.858 37.037 0.00 0.00 36.11 2.74
174 175 6.986817 CCATTGAAGTCTACTTTACGATCCAT 59.013 38.462 0.00 0.00 36.11 3.41
175 176 6.338146 CCATTGAAGTCTACTTTACGATCCA 58.662 40.000 0.00 0.00 36.11 3.41
176 177 5.234543 GCCATTGAAGTCTACTTTACGATCC 59.765 44.000 0.00 0.00 36.11 3.36
177 178 5.234543 GGCCATTGAAGTCTACTTTACGATC 59.765 44.000 0.00 0.00 36.11 3.69
178 179 5.116882 GGCCATTGAAGTCTACTTTACGAT 58.883 41.667 0.00 0.00 36.11 3.73
179 180 4.020928 TGGCCATTGAAGTCTACTTTACGA 60.021 41.667 0.00 0.00 36.11 3.43
180 181 4.250464 TGGCCATTGAAGTCTACTTTACG 58.750 43.478 0.00 0.00 36.11 3.18
181 182 5.488341 TCTGGCCATTGAAGTCTACTTTAC 58.512 41.667 5.51 0.00 36.11 2.01
182 183 5.755409 TCTGGCCATTGAAGTCTACTTTA 57.245 39.130 5.51 0.00 36.11 1.85
183 184 4.640771 TCTGGCCATTGAAGTCTACTTT 57.359 40.909 5.51 0.00 36.11 2.66
184 185 4.640771 TTCTGGCCATTGAAGTCTACTT 57.359 40.909 5.51 0.00 39.23 2.24
185 186 4.640771 TTTCTGGCCATTGAAGTCTACT 57.359 40.909 5.51 0.00 0.00 2.57
186 187 5.447818 CGATTTTCTGGCCATTGAAGTCTAC 60.448 44.000 5.51 0.00 0.00 2.59
187 188 4.635765 CGATTTTCTGGCCATTGAAGTCTA 59.364 41.667 5.51 0.00 0.00 2.59
188 189 3.441572 CGATTTTCTGGCCATTGAAGTCT 59.558 43.478 5.51 0.00 0.00 3.24
189 190 3.440173 TCGATTTTCTGGCCATTGAAGTC 59.560 43.478 5.51 8.73 0.00 3.01
190 191 3.191371 GTCGATTTTCTGGCCATTGAAGT 59.809 43.478 5.51 0.00 0.00 3.01
191 192 3.441572 AGTCGATTTTCTGGCCATTGAAG 59.558 43.478 5.51 0.00 0.00 3.02
192 193 3.420893 AGTCGATTTTCTGGCCATTGAA 58.579 40.909 5.51 4.21 0.00 2.69
193 194 3.071874 AGTCGATTTTCTGGCCATTGA 57.928 42.857 5.51 0.00 0.00 2.57
194 195 4.438744 GGTTAGTCGATTTTCTGGCCATTG 60.439 45.833 5.51 0.00 0.00 2.82
195 196 3.694566 GGTTAGTCGATTTTCTGGCCATT 59.305 43.478 5.51 0.00 0.00 3.16
196 197 3.279434 GGTTAGTCGATTTTCTGGCCAT 58.721 45.455 5.51 0.00 0.00 4.40
197 198 2.617021 GGGTTAGTCGATTTTCTGGCCA 60.617 50.000 4.71 4.71 0.00 5.36
198 199 2.014857 GGGTTAGTCGATTTTCTGGCC 58.985 52.381 0.00 0.00 0.00 5.36
199 200 2.706890 TGGGTTAGTCGATTTTCTGGC 58.293 47.619 0.00 0.00 0.00 4.85
200 201 5.699097 TTTTGGGTTAGTCGATTTTCTGG 57.301 39.130 0.00 0.00 0.00 3.86
201 202 7.367285 TCAATTTTGGGTTAGTCGATTTTCTG 58.633 34.615 0.00 0.00 0.00 3.02
202 203 7.519032 TCAATTTTGGGTTAGTCGATTTTCT 57.481 32.000 0.00 0.00 0.00 2.52
203 204 7.865889 AGTTCAATTTTGGGTTAGTCGATTTTC 59.134 33.333 0.00 0.00 0.00 2.29
204 205 7.722363 AGTTCAATTTTGGGTTAGTCGATTTT 58.278 30.769 0.00 0.00 0.00 1.82
205 206 7.284919 AGTTCAATTTTGGGTTAGTCGATTT 57.715 32.000 0.00 0.00 0.00 2.17
206 207 6.894339 AGTTCAATTTTGGGTTAGTCGATT 57.106 33.333 0.00 0.00 0.00 3.34
207 208 6.488683 TGAAGTTCAATTTTGGGTTAGTCGAT 59.511 34.615 2.20 0.00 0.00 3.59
208 209 5.823570 TGAAGTTCAATTTTGGGTTAGTCGA 59.176 36.000 2.20 0.00 0.00 4.20
209 210 6.067263 TGAAGTTCAATTTTGGGTTAGTCG 57.933 37.500 2.20 0.00 0.00 4.18
210 211 6.366061 GCATGAAGTTCAATTTTGGGTTAGTC 59.634 38.462 10.14 0.00 0.00 2.59
211 212 6.183360 TGCATGAAGTTCAATTTTGGGTTAGT 60.183 34.615 10.14 0.00 0.00 2.24
212 213 6.222389 TGCATGAAGTTCAATTTTGGGTTAG 58.778 36.000 10.14 0.00 0.00 2.34
213 214 6.166984 TGCATGAAGTTCAATTTTGGGTTA 57.833 33.333 10.14 0.00 0.00 2.85
214 215 5.033589 TGCATGAAGTTCAATTTTGGGTT 57.966 34.783 10.14 0.00 0.00 4.11
215 216 4.686191 TGCATGAAGTTCAATTTTGGGT 57.314 36.364 10.14 0.00 0.00 4.51
216 217 5.058490 AGTTGCATGAAGTTCAATTTTGGG 58.942 37.500 10.14 0.00 0.00 4.12
217 218 6.607735 AAGTTGCATGAAGTTCAATTTTGG 57.392 33.333 10.14 0.00 0.00 3.28
223 224 9.625747 TCCATATATAAGTTGCATGAAGTTCAA 57.374 29.630 10.14 0.00 0.00 2.69
224 225 9.797642 ATCCATATATAAGTTGCATGAAGTTCA 57.202 29.630 8.27 8.27 0.00 3.18
231 232 9.778993 GCACTTTATCCATATATAAGTTGCATG 57.221 33.333 0.00 0.00 34.35 4.06
232 233 9.519191 TGCACTTTATCCATATATAAGTTGCAT 57.481 29.630 12.98 0.00 36.73 3.96
233 234 8.916628 TGCACTTTATCCATATATAAGTTGCA 57.083 30.769 12.98 12.98 37.93 4.08
234 235 9.778993 CATGCACTTTATCCATATATAAGTTGC 57.221 33.333 0.00 10.01 34.55 4.17
299 300 9.120538 GGAGTAGGCAATTTTGATAAAGTGATA 57.879 33.333 2.66 0.00 40.74 2.15
300 301 7.201732 CGGAGTAGGCAATTTTGATAAAGTGAT 60.202 37.037 2.66 0.00 40.74 3.06
301 302 6.093495 CGGAGTAGGCAATTTTGATAAAGTGA 59.907 38.462 2.66 0.00 40.74 3.41
302 303 6.258160 CGGAGTAGGCAATTTTGATAAAGTG 58.742 40.000 0.00 0.00 41.10 3.16
303 304 5.163652 GCGGAGTAGGCAATTTTGATAAAGT 60.164 40.000 0.00 0.00 0.00 2.66
304 305 5.163663 TGCGGAGTAGGCAATTTTGATAAAG 60.164 40.000 0.00 0.00 37.49 1.85
305 306 4.702612 TGCGGAGTAGGCAATTTTGATAAA 59.297 37.500 0.00 0.00 37.49 1.40
306 307 4.265893 TGCGGAGTAGGCAATTTTGATAA 58.734 39.130 0.00 0.00 37.49 1.75
307 308 3.879998 TGCGGAGTAGGCAATTTTGATA 58.120 40.909 0.00 0.00 37.49 2.15
308 309 2.722094 TGCGGAGTAGGCAATTTTGAT 58.278 42.857 0.00 0.00 37.49 2.57
309 310 2.192664 TGCGGAGTAGGCAATTTTGA 57.807 45.000 0.00 0.00 37.49 2.69
316 317 0.326595 TCCAATTTGCGGAGTAGGCA 59.673 50.000 0.00 0.00 38.93 4.75
317 318 1.132453 GTTCCAATTTGCGGAGTAGGC 59.868 52.381 0.00 0.00 33.01 3.93
318 319 1.743394 GGTTCCAATTTGCGGAGTAGG 59.257 52.381 0.00 0.00 33.01 3.18
319 320 2.432444 TGGTTCCAATTTGCGGAGTAG 58.568 47.619 0.00 0.00 33.01 2.57
320 321 2.570415 TGGTTCCAATTTGCGGAGTA 57.430 45.000 0.00 0.00 33.01 2.59
321 322 1.613437 CTTGGTTCCAATTTGCGGAGT 59.387 47.619 4.67 0.00 33.01 3.85
322 323 1.669795 GCTTGGTTCCAATTTGCGGAG 60.670 52.381 4.67 0.00 33.01 4.63
323 324 0.316841 GCTTGGTTCCAATTTGCGGA 59.683 50.000 4.67 0.00 0.00 5.54
324 325 0.670239 GGCTTGGTTCCAATTTGCGG 60.670 55.000 4.67 0.00 0.00 5.69
325 326 0.318120 AGGCTTGGTTCCAATTTGCG 59.682 50.000 4.67 0.00 0.00 4.85
326 327 1.344114 TGAGGCTTGGTTCCAATTTGC 59.656 47.619 4.67 5.41 0.00 3.68
327 328 3.512724 AGATGAGGCTTGGTTCCAATTTG 59.487 43.478 4.67 0.00 0.00 2.32
328 329 3.782992 AGATGAGGCTTGGTTCCAATTT 58.217 40.909 4.67 0.00 0.00 1.82
329 330 3.463048 AGATGAGGCTTGGTTCCAATT 57.537 42.857 4.67 0.00 0.00 2.32
330 331 4.079558 ACATAGATGAGGCTTGGTTCCAAT 60.080 41.667 4.67 0.00 0.00 3.16
331 332 3.266772 ACATAGATGAGGCTTGGTTCCAA 59.733 43.478 4.17 4.17 0.00 3.53
332 333 2.846206 ACATAGATGAGGCTTGGTTCCA 59.154 45.455 0.00 0.00 0.00 3.53
333 334 3.567478 ACATAGATGAGGCTTGGTTCC 57.433 47.619 0.00 0.00 0.00 3.62
334 335 3.065925 GCAACATAGATGAGGCTTGGTTC 59.934 47.826 0.00 0.00 0.00 3.62
335 336 3.019564 GCAACATAGATGAGGCTTGGTT 58.980 45.455 0.00 0.00 0.00 3.67
336 337 2.240667 AGCAACATAGATGAGGCTTGGT 59.759 45.455 0.00 0.00 37.40 3.67
337 338 2.617308 CAGCAACATAGATGAGGCTTGG 59.383 50.000 9.04 0.00 38.13 3.61
338 339 3.064958 CACAGCAACATAGATGAGGCTTG 59.935 47.826 9.04 8.03 38.13 4.01
339 340 3.276857 CACAGCAACATAGATGAGGCTT 58.723 45.455 9.04 0.00 38.13 4.35
340 341 2.238144 ACACAGCAACATAGATGAGGCT 59.762 45.455 0.00 0.00 39.75 4.58
341 342 2.636830 ACACAGCAACATAGATGAGGC 58.363 47.619 0.00 0.00 0.00 4.70
342 343 6.018425 GTGAATACACAGCAACATAGATGAGG 60.018 42.308 0.00 0.00 45.32 3.86
343 344 6.292008 CGTGAATACACAGCAACATAGATGAG 60.292 42.308 0.00 0.00 46.20 2.90
344 345 5.519927 CGTGAATACACAGCAACATAGATGA 59.480 40.000 0.00 0.00 46.20 2.92
345 346 5.731278 CGTGAATACACAGCAACATAGATG 58.269 41.667 0.00 0.00 46.20 2.90
346 347 4.271049 GCGTGAATACACAGCAACATAGAT 59.729 41.667 0.00 0.00 46.20 1.98
347 348 3.616821 GCGTGAATACACAGCAACATAGA 59.383 43.478 0.00 0.00 46.20 1.98
348 349 3.370672 TGCGTGAATACACAGCAACATAG 59.629 43.478 13.64 0.00 45.31 2.23
349 350 3.330267 TGCGTGAATACACAGCAACATA 58.670 40.909 13.64 0.00 45.31 2.29
350 351 2.150390 TGCGTGAATACACAGCAACAT 58.850 42.857 13.64 0.00 45.31 2.71
351 352 1.587547 TGCGTGAATACACAGCAACA 58.412 45.000 13.64 0.00 45.31 3.33
354 355 3.563508 CAATTTGCGTGAATACACAGCA 58.436 40.909 12.62 12.62 45.95 4.41
355 356 2.916716 CCAATTTGCGTGAATACACAGC 59.083 45.455 0.00 0.00 46.20 4.40
356 357 4.418013 TCCAATTTGCGTGAATACACAG 57.582 40.909 0.00 0.00 46.20 3.66
357 358 4.541779 GTTCCAATTTGCGTGAATACACA 58.458 39.130 0.00 0.00 46.20 3.72
358 359 3.917985 GGTTCCAATTTGCGTGAATACAC 59.082 43.478 0.00 0.00 42.88 2.90
362 363 3.652274 CTTGGTTCCAATTTGCGTGAAT 58.348 40.909 4.67 0.00 0.00 2.57
372 373 1.678970 GCGGAGGCTTGGTTCCAAT 60.679 57.895 4.67 0.00 35.83 3.16
391 392 0.307760 CCGACCAGGATTTAATGCGC 59.692 55.000 0.00 0.00 45.00 6.09
392 393 1.663695 ACCGACCAGGATTTAATGCG 58.336 50.000 0.00 0.00 45.00 4.73
393 394 3.001939 CGTTACCGACCAGGATTTAATGC 59.998 47.826 0.00 0.00 45.00 3.56
394 395 4.186159 ACGTTACCGACCAGGATTTAATG 58.814 43.478 0.00 0.00 45.00 1.90
395 396 4.081531 TGACGTTACCGACCAGGATTTAAT 60.082 41.667 0.00 0.00 45.00 1.40
396 397 3.257873 TGACGTTACCGACCAGGATTTAA 59.742 43.478 0.00 0.00 45.00 1.52
397 398 2.824936 TGACGTTACCGACCAGGATTTA 59.175 45.455 0.00 0.00 45.00 1.40
398 399 1.619827 TGACGTTACCGACCAGGATTT 59.380 47.619 0.00 0.00 45.00 2.17
399 400 1.203994 CTGACGTTACCGACCAGGATT 59.796 52.381 0.00 0.00 45.00 3.01
467 468 9.640963 GTTGACTCAGTATTGATTACAACTAGT 57.359 33.333 16.80 0.00 38.90 2.57
468 469 9.862371 AGTTGACTCAGTATTGATTACAACTAG 57.138 33.333 21.16 0.00 42.18 2.57
470 471 9.561069 AAAGTTGACTCAGTATTGATTACAACT 57.439 29.630 18.99 18.99 43.69 3.16
471 472 9.599322 CAAAGTTGACTCAGTATTGATTACAAC 57.401 33.333 16.56 16.56 38.81 3.32
472 473 8.783093 CCAAAGTTGACTCAGTATTGATTACAA 58.217 33.333 0.00 0.00 40.42 2.41
474 475 7.094805 TGCCAAAGTTGACTCAGTATTGATTAC 60.095 37.037 0.00 0.00 31.68 1.89
475 476 6.939730 TGCCAAAGTTGACTCAGTATTGATTA 59.060 34.615 0.00 0.00 31.68 1.75
505 513 3.807622 TCAAAGCTAGCAACGCCATATAC 59.192 43.478 18.83 0.00 0.00 1.47
516 532 6.739843 GCCTCTACTATGATTCAAAGCTAGCA 60.740 42.308 18.83 0.00 0.00 3.49
535 551 2.239654 CCCAAACAGATCTTGGCCTCTA 59.760 50.000 3.32 0.00 41.80 2.43
536 552 1.005215 CCCAAACAGATCTTGGCCTCT 59.995 52.381 3.32 0.00 41.80 3.69
537 553 1.272147 ACCCAAACAGATCTTGGCCTC 60.272 52.381 3.32 0.00 41.80 4.70
607 623 1.662629 CAAGTAATCAGGAGCGCACAG 59.337 52.381 11.47 0.00 0.00 3.66
643 659 1.134670 GGACGGAGGGAGAATTGTCTG 60.135 57.143 2.24 0.00 32.80 3.51
649 665 2.489528 TTATGGGACGGAGGGAGAAT 57.510 50.000 0.00 0.00 0.00 2.40
653 669 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
654 670 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
656 672 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
657 673 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
658 674 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
659 675 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
660 676 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
661 677 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
662 678 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
663 679 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
666 682 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
667 683 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
668 684 7.601130 TGTGTAGTGTCAAAAACGCTCTTATAT 59.399 33.333 0.00 0.00 45.69 0.86
669 685 6.924612 TGTGTAGTGTCAAAAACGCTCTTATA 59.075 34.615 0.00 0.00 45.69 0.98
670 686 5.756347 TGTGTAGTGTCAAAAACGCTCTTAT 59.244 36.000 0.00 0.00 45.69 1.73
671 687 5.110598 TGTGTAGTGTCAAAAACGCTCTTA 58.889 37.500 0.00 0.00 45.69 2.10
672 688 3.936453 TGTGTAGTGTCAAAAACGCTCTT 59.064 39.130 0.00 0.00 45.69 2.85
673 689 3.527533 TGTGTAGTGTCAAAAACGCTCT 58.472 40.909 0.00 0.00 45.69 4.09
674 690 3.936902 TGTGTAGTGTCAAAAACGCTC 57.063 42.857 0.00 0.00 45.69 5.03
676 692 4.011058 ACTTGTGTAGTGTCAAAAACGC 57.989 40.909 0.00 0.00 35.19 4.84
705 721 9.941325 CTCCTCTGTCTCATAATATAAAAGCAT 57.059 33.333 0.00 0.00 0.00 3.79
706 722 8.928448 ACTCCTCTGTCTCATAATATAAAAGCA 58.072 33.333 0.00 0.00 0.00 3.91
713 729 9.875708 ACTTTCTACTCCTCTGTCTCATAATAT 57.124 33.333 0.00 0.00 0.00 1.28
715 731 9.349713 CTACTTTCTACTCCTCTGTCTCATAAT 57.650 37.037 0.00 0.00 0.00 1.28
716 732 8.549731 TCTACTTTCTACTCCTCTGTCTCATAA 58.450 37.037 0.00 0.00 0.00 1.90
717 733 8.091952 TCTACTTTCTACTCCTCTGTCTCATA 57.908 38.462 0.00 0.00 0.00 2.15
718 734 6.964464 TCTACTTTCTACTCCTCTGTCTCAT 58.036 40.000 0.00 0.00 0.00 2.90
719 735 6.375830 TCTACTTTCTACTCCTCTGTCTCA 57.624 41.667 0.00 0.00 0.00 3.27
720 736 7.875327 ATTCTACTTTCTACTCCTCTGTCTC 57.125 40.000 0.00 0.00 0.00 3.36
721 737 9.756571 TTAATTCTACTTTCTACTCCTCTGTCT 57.243 33.333 0.00 0.00 0.00 3.41
722 738 9.791820 GTTAATTCTACTTTCTACTCCTCTGTC 57.208 37.037 0.00 0.00 0.00 3.51
723 739 8.751242 GGTTAATTCTACTTTCTACTCCTCTGT 58.249 37.037 0.00 0.00 0.00 3.41
724 740 8.198778 GGGTTAATTCTACTTTCTACTCCTCTG 58.801 40.741 0.00 0.00 0.00 3.35
725 741 7.899709 TGGGTTAATTCTACTTTCTACTCCTCT 59.100 37.037 0.00 0.00 0.00 3.69
726 742 7.980662 GTGGGTTAATTCTACTTTCTACTCCTC 59.019 40.741 0.00 0.00 0.00 3.71
727 743 7.092979 GGTGGGTTAATTCTACTTTCTACTCCT 60.093 40.741 0.00 0.00 0.00 3.69
728 744 7.046652 GGTGGGTTAATTCTACTTTCTACTCC 58.953 42.308 0.00 0.00 0.00 3.85
729 745 7.618137 TGGTGGGTTAATTCTACTTTCTACTC 58.382 38.462 0.00 0.00 0.00 2.59
730 746 7.563724 TGGTGGGTTAATTCTACTTTCTACT 57.436 36.000 0.00 0.00 0.00 2.57
769 785 9.400638 CTCTTATATTAGTTTACAGAAGCTCCG 57.599 37.037 0.00 0.00 0.00 4.63
822 838 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
823 839 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
824 840 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
825 841 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
826 842 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
830 846 9.646522 ACTTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
831 847 9.646522 AACTTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
832 848 8.544687 AACTTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
833 849 7.068716 GGAACTTACTCCCTCCGTAAACTAATA 59.931 40.741 0.00 0.00 0.00 0.98
834 850 6.127225 GGAACTTACTCCCTCCGTAAACTAAT 60.127 42.308 0.00 0.00 0.00 1.73
835 851 5.185828 GGAACTTACTCCCTCCGTAAACTAA 59.814 44.000 0.00 0.00 0.00 2.24
836 852 4.706962 GGAACTTACTCCCTCCGTAAACTA 59.293 45.833 0.00 0.00 0.00 2.24
837 853 3.513119 GGAACTTACTCCCTCCGTAAACT 59.487 47.826 0.00 0.00 0.00 2.66
838 854 3.259123 TGGAACTTACTCCCTCCGTAAAC 59.741 47.826 0.00 0.00 34.22 2.01
839 855 3.509442 TGGAACTTACTCCCTCCGTAAA 58.491 45.455 0.00 0.00 34.22 2.01
840 856 3.173953 TGGAACTTACTCCCTCCGTAA 57.826 47.619 0.00 0.00 34.22 3.18
841 857 2.827921 GTTGGAACTTACTCCCTCCGTA 59.172 50.000 0.00 0.00 34.22 4.02
842 858 1.622312 GTTGGAACTTACTCCCTCCGT 59.378 52.381 0.00 0.00 34.22 4.69
843 859 1.403780 CGTTGGAACTTACTCCCTCCG 60.404 57.143 0.00 0.00 34.22 4.63
844 860 1.066358 CCGTTGGAACTTACTCCCTCC 60.066 57.143 0.00 0.00 34.22 4.30
845 861 1.897802 TCCGTTGGAACTTACTCCCTC 59.102 52.381 0.00 0.00 34.22 4.30
846 862 2.019807 TCCGTTGGAACTTACTCCCT 57.980 50.000 0.00 0.00 34.22 4.20
847 863 2.301009 TCTTCCGTTGGAACTTACTCCC 59.699 50.000 0.00 0.00 36.71 4.30
848 864 3.006644 ACTCTTCCGTTGGAACTTACTCC 59.993 47.826 0.00 0.00 36.71 3.85
859 883 3.119316 ACATAGCAGAGACTCTTCCGTTG 60.119 47.826 0.98 0.00 0.00 4.10
881 905 3.376234 GGAGGCATATATACACGAGCGTA 59.624 47.826 0.00 0.00 0.00 4.42
882 906 2.163815 GGAGGCATATATACACGAGCGT 59.836 50.000 0.00 0.00 0.00 5.07
883 907 2.423892 AGGAGGCATATATACACGAGCG 59.576 50.000 0.00 0.00 0.00 5.03
884 908 4.398358 TGTAGGAGGCATATATACACGAGC 59.602 45.833 0.00 0.00 0.00 5.03
915 946 4.215109 AGTAGATGGCTTGTGTTTTGGTT 58.785 39.130 0.00 0.00 0.00 3.67
958 989 2.093816 TGGTGTCTATGAGCTGCTCAAG 60.094 50.000 33.31 27.60 44.04 3.02
959 990 1.901833 TGGTGTCTATGAGCTGCTCAA 59.098 47.619 33.31 21.21 44.04 3.02
960 991 1.205655 GTGGTGTCTATGAGCTGCTCA 59.794 52.381 32.07 32.07 44.99 4.26
961 992 1.205655 TGTGGTGTCTATGAGCTGCTC 59.794 52.381 22.38 22.38 0.00 4.26
962 993 1.066573 GTGTGGTGTCTATGAGCTGCT 60.067 52.381 0.00 0.00 0.00 4.24
963 994 1.363744 GTGTGGTGTCTATGAGCTGC 58.636 55.000 0.00 0.00 0.00 5.25
964 995 1.276138 TGGTGTGGTGTCTATGAGCTG 59.724 52.381 0.00 0.00 0.00 4.24
965 996 1.552337 CTGGTGTGGTGTCTATGAGCT 59.448 52.381 0.00 0.00 0.00 4.09
966 997 2.009042 GCTGGTGTGGTGTCTATGAGC 61.009 57.143 0.00 0.00 0.00 4.26
967 998 1.276138 TGCTGGTGTGGTGTCTATGAG 59.724 52.381 0.00 0.00 0.00 2.90
968 999 1.276138 CTGCTGGTGTGGTGTCTATGA 59.724 52.381 0.00 0.00 0.00 2.15
969 1000 1.730501 CTGCTGGTGTGGTGTCTATG 58.269 55.000 0.00 0.00 0.00 2.23
970 1001 0.036010 GCTGCTGGTGTGGTGTCTAT 60.036 55.000 0.00 0.00 0.00 1.98
971 1002 1.371183 GCTGCTGGTGTGGTGTCTA 59.629 57.895 0.00 0.00 0.00 2.59
972 1003 2.111878 GCTGCTGGTGTGGTGTCT 59.888 61.111 0.00 0.00 0.00 3.41
973 1004 2.203195 TGCTGCTGGTGTGGTGTC 60.203 61.111 0.00 0.00 0.00 3.67
974 1005 2.203252 CTGCTGCTGGTGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
975 1006 3.667282 GCTGCTGCTGGTGTGGTG 61.667 66.667 8.53 0.00 36.03 4.17
976 1007 4.193893 TGCTGCTGCTGGTGTGGT 62.194 61.111 17.00 0.00 40.48 4.16
977 1008 3.362797 CTGCTGCTGCTGGTGTGG 61.363 66.667 17.00 0.00 40.48 4.17
978 1009 4.039357 GCTGCTGCTGCTGGTGTG 62.039 66.667 22.10 5.18 40.48 3.82
979 1010 4.574271 TGCTGCTGCTGCTGGTGT 62.574 61.111 27.67 0.00 40.48 4.16
980 1011 3.738246 CTGCTGCTGCTGCTGGTG 61.738 66.667 27.67 13.98 40.48 4.17
1308 1345 3.927481 GAAGGCGGCCCAGAAGCTT 62.927 63.158 17.02 0.00 0.00 3.74
1309 1346 4.416738 GAAGGCGGCCCAGAAGCT 62.417 66.667 17.02 0.00 0.00 3.74
1343 2446 7.959175 ACCAAATGAAATGGAGGATGAATATG 58.041 34.615 0.00 0.00 40.56 1.78
1346 2449 5.364735 GGACCAAATGAAATGGAGGATGAAT 59.635 40.000 0.00 0.00 40.56 2.57
1347 2450 4.711355 GGACCAAATGAAATGGAGGATGAA 59.289 41.667 0.00 0.00 40.56 2.57
1349 2452 3.067180 CGGACCAAATGAAATGGAGGATG 59.933 47.826 0.00 0.00 40.56 3.51
1350 2453 3.290710 CGGACCAAATGAAATGGAGGAT 58.709 45.455 0.00 0.00 40.56 3.24
1354 2457 2.080693 CGACGGACCAAATGAAATGGA 58.919 47.619 0.00 0.00 40.56 3.41
1355 2458 1.810151 ACGACGGACCAAATGAAATGG 59.190 47.619 0.00 0.00 43.84 3.16
1356 2459 2.225491 ACACGACGGACCAAATGAAATG 59.775 45.455 0.00 0.00 0.00 2.32
1365 2474 0.752054 AAGGTAAACACGACGGACCA 59.248 50.000 0.00 0.00 32.28 4.02
1367 2476 1.523934 CACAAGGTAAACACGACGGAC 59.476 52.381 0.00 0.00 0.00 4.79
1379 2488 1.630369 AGAGCTCAATGCCACAAGGTA 59.370 47.619 17.77 0.00 44.23 3.08
1380 2489 0.403271 AGAGCTCAATGCCACAAGGT 59.597 50.000 17.77 0.00 44.23 3.50
1381 2490 1.201647 CAAGAGCTCAATGCCACAAGG 59.798 52.381 17.77 0.00 44.23 3.61
1382 2491 1.884579 ACAAGAGCTCAATGCCACAAG 59.115 47.619 17.77 0.00 44.23 3.16
1384 2493 2.302733 TCTACAAGAGCTCAATGCCACA 59.697 45.455 17.77 0.89 44.23 4.17
1385 2494 2.675348 GTCTACAAGAGCTCAATGCCAC 59.325 50.000 17.77 8.12 44.23 5.01
1387 2496 2.977914 TGTCTACAAGAGCTCAATGCC 58.022 47.619 17.77 4.69 44.23 4.40
1520 2650 1.893786 CTCCGTCCAGGGTCTTCAG 59.106 63.158 0.00 0.00 41.52 3.02
1750 2880 0.109342 AGAACTCCACCAGCCTGTTG 59.891 55.000 0.00 0.00 0.00 3.33
1794 2924 2.520536 GGCCTCGTCCCCAGCATAT 61.521 63.158 0.00 0.00 0.00 1.78
1795 2925 3.161450 GGCCTCGTCCCCAGCATA 61.161 66.667 0.00 0.00 0.00 3.14
1887 3017 3.753797 GTGGGGAACATGAAAGAGAGAAC 59.246 47.826 0.00 0.00 0.00 3.01
1929 3059 2.163412 TGGCTCACTCAACAACAACAAC 59.837 45.455 0.00 0.00 0.00 3.32
1981 3111 7.129457 TGTTTGCCTGAAGATAGATAGACAT 57.871 36.000 0.00 0.00 0.00 3.06
2028 3160 5.181245 AGTCAATAAAATTCACCCACTGTCG 59.819 40.000 0.00 0.00 0.00 4.35
2065 3201 8.237267 GTGCTTATAGTGCTTGTATTTTCTTGT 58.763 33.333 2.33 0.00 0.00 3.16
2071 3207 5.447279 GCGTGTGCTTATAGTGCTTGTATTT 60.447 40.000 2.33 0.00 38.39 1.40
2104 3240 2.316867 TGTGCATTCCAGTCGTGCG 61.317 57.895 0.00 0.00 41.61 5.34
2127 3263 3.553765 GTGTGCGCGCGATGATGA 61.554 61.111 37.18 7.17 0.00 2.92
2172 3308 4.745125 TGAGTTCACTTCGACATGACTTTC 59.255 41.667 0.00 0.00 0.00 2.62
2180 3316 2.595124 TGCTTGAGTTCACTTCGACA 57.405 45.000 0.00 0.00 0.00 4.35
2184 3320 5.673337 TGTTGTATGCTTGAGTTCACTTC 57.327 39.130 0.00 0.00 0.00 3.01
2186 3322 4.881273 TGTTGTTGTATGCTTGAGTTCACT 59.119 37.500 0.00 0.00 0.00 3.41
2187 3323 5.168526 TGTTGTTGTATGCTTGAGTTCAC 57.831 39.130 0.00 0.00 0.00 3.18
2188 3324 5.449862 GGTTGTTGTTGTATGCTTGAGTTCA 60.450 40.000 0.00 0.00 0.00 3.18
2215 3356 2.936498 CAACCGGTGATGGTAGATGTTC 59.064 50.000 8.52 0.00 42.89 3.18
2222 3363 0.108774 TGTTGCAACCGGTGATGGTA 59.891 50.000 26.14 0.76 42.89 3.25
2235 3376 0.888736 CCCACATTCCGAGTGTTGCA 60.889 55.000 0.00 0.00 35.24 4.08
2239 3380 2.420129 GCTTATCCCACATTCCGAGTGT 60.420 50.000 0.00 0.00 35.24 3.55
2243 3384 3.576078 AATGCTTATCCCACATTCCGA 57.424 42.857 0.00 0.00 27.91 4.55
2271 3412 2.421388 CGTTCCCTTATTGGAGGCATCA 60.421 50.000 0.00 0.00 38.35 3.07
2427 3568 9.337396 TCAATATGGTTTTATCTGTATGTGTCC 57.663 33.333 0.00 0.00 0.00 4.02
2437 3578 8.677148 ATTGCTACGTCAATATGGTTTTATCT 57.323 30.769 0.00 0.00 35.12 1.98
2508 3649 8.731605 CAGATACTAACACATAGGACATATCGT 58.268 37.037 0.00 0.00 35.81 3.73
2549 3690 5.637006 AGTCTATCTATCATCCAACGCTC 57.363 43.478 0.00 0.00 0.00 5.03
2624 3765 2.303175 GGGTTGGACAACAGCTAAACA 58.697 47.619 16.13 0.00 42.85 2.83
2632 3773 2.111162 CAAAGCGGGTTGGACAACA 58.889 52.632 16.13 0.00 42.85 3.33
2700 3841 6.630413 CGTTTCCAGAAATCTTCCCTGATCTA 60.630 42.308 0.00 0.00 32.36 1.98
2701 3842 5.504853 GTTTCCAGAAATCTTCCCTGATCT 58.495 41.667 0.00 0.00 32.36 2.75
2749 3890 2.363306 TCTTTCTTGGCCTTCTTGCA 57.637 45.000 3.32 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.