Multiple sequence alignment - TraesCS7A01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G049000 chr7A 100.000 5671 0 0 1 5671 22931369 22937039 0.000000e+00 10473.0
1 TraesCS7A01G049000 chr7A 87.342 79 3 3 5563 5636 132177196 132177120 3.640000e-12 84.2
2 TraesCS7A01G049000 chr7D 94.022 2526 83 32 1 2485 22580173 22582671 0.000000e+00 3766.0
3 TraesCS7A01G049000 chr7D 90.171 2218 146 35 2798 4999 22582852 22585013 0.000000e+00 2822.0
4 TraesCS7A01G049000 chr7D 98.578 211 3 0 2485 2695 22582644 22582854 1.930000e-99 374.0
5 TraesCS7A01G049000 chr7D 81.507 146 11 12 5088 5221 22585146 22585287 7.770000e-19 106.0
6 TraesCS7A01G049000 chr7D 95.522 67 2 1 5423 5488 22585557 22585623 7.770000e-19 106.0
7 TraesCS7A01G049000 chr7D 89.041 73 2 2 5563 5630 253656582 253656511 1.010000e-12 86.1
8 TraesCS7A01G049000 chr4A 93.627 2338 71 29 19 2319 705503797 705506093 0.000000e+00 3421.0
9 TraesCS7A01G049000 chr4A 91.154 1933 136 21 2794 4698 705506465 705508390 0.000000e+00 2590.0
10 TraesCS7A01G049000 chr4A 99.048 210 2 0 2485 2694 705506258 705506467 1.490000e-100 377.0
11 TraesCS7A01G049000 chr4A 91.620 179 6 5 2310 2485 705506113 705506285 7.340000e-59 239.0
12 TraesCS7A01G049000 chr4A 88.571 105 7 3 2693 2793 713964891 713964994 7.720000e-24 122.0
13 TraesCS7A01G049000 chr4A 85.714 119 11 4 2692 2805 717048764 717048647 2.780000e-23 121.0
14 TraesCS7A01G049000 chr4A 87.179 78 4 5 5563 5636 205219685 205219760 3.640000e-12 84.2
15 TraesCS7A01G049000 chr4A 100.000 36 0 0 5277 5312 705508941 705508976 3.670000e-07 67.6
16 TraesCS7A01G049000 chr5D 90.265 113 9 2 2691 2803 419768133 419768023 4.580000e-31 147.0
17 TraesCS7A01G049000 chr4B 93.478 92 4 1 2706 2797 450119826 450119915 9.910000e-28 135.0
18 TraesCS7A01G049000 chr4B 88.608 79 2 3 5563 5636 290570832 290570908 7.830000e-14 89.8
19 TraesCS7A01G049000 chr3A 89.189 111 6 4 2691 2800 726385282 726385177 3.560000e-27 134.0
20 TraesCS7A01G049000 chr3D 88.182 110 7 6 2693 2799 68167898 68168004 5.960000e-25 126.0
21 TraesCS7A01G049000 chr3D 86.726 113 7 6 2685 2797 609921352 609921456 9.980000e-23 119.0
22 TraesCS7A01G049000 chr3B 85.470 117 11 4 2692 2803 579888591 579888706 3.590000e-22 117.0
23 TraesCS7A01G049000 chr2B 86.087 115 9 5 2687 2796 251134896 251134784 3.590000e-22 117.0
24 TraesCS7A01G049000 chr2B 87.342 79 4 2 5563 5636 192851409 192851332 1.010000e-12 86.1
25 TraesCS7A01G049000 chr6D 90.541 74 1 2 5563 5631 130458467 130458539 6.050000e-15 93.5
26 TraesCS7A01G049000 chr6B 88.608 79 2 3 5563 5636 696408952 696408876 7.830000e-14 89.8
27 TraesCS7A01G049000 chr4D 88.608 79 2 3 5563 5636 319988822 319988898 7.830000e-14 89.8
28 TraesCS7A01G049000 chr4D 87.342 79 3 3 5563 5636 443218022 443217946 3.640000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G049000 chr7A 22931369 22937039 5670 False 10473.00 10473 100.0000 1 5671 1 chr7A.!!$F1 5670
1 TraesCS7A01G049000 chr7D 22580173 22585623 5450 False 1434.80 3766 91.9600 1 5488 5 chr7D.!!$F1 5487
2 TraesCS7A01G049000 chr4A 705503797 705508976 5179 False 1338.92 3421 95.0898 19 5312 5 chr4A.!!$F3 5293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 555 4.382345 TGTCACTGTCTCATGCATCTAG 57.618 45.455 0.00 0.00 0.00 2.43 F
1820 1845 1.065636 CAGCTGATGAAGAGCAAGGGA 60.066 52.381 8.42 0.00 39.05 4.20 F
2088 2113 0.376852 CCTCGTGTTGTGTGTGGTTG 59.623 55.000 0.00 0.00 0.00 3.77 F
3008 3082 0.527565 CTATGGGCGCCATTATTGCC 59.472 55.000 30.85 8.62 42.23 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2089 0.468226 ACACACAACACGAGGGATGT 59.532 50.0 0.00 0.0 0.00 3.06 R
3698 3782 0.754472 AAAGCCACTGCAGCAAATGT 59.246 45.0 15.27 0.0 41.13 2.71 R
4028 4116 0.761802 CTTCTGGTCCATAGCCCCTC 59.238 60.0 0.00 0.0 0.00 4.30 R
4969 5091 0.385473 CGCGAGCAATCGTTGGTTTT 60.385 50.0 0.00 0.0 42.23 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.895668 TTTAGTTACCCCTTCGTCACAT 57.104 40.909 0.00 0.00 0.00 3.21
37 38 5.106555 CCTTCGTCACATGTTTTCAGCTATT 60.107 40.000 0.00 0.00 0.00 1.73
43 44 5.412594 TCACATGTTTTCAGCTATTGGTCTC 59.587 40.000 0.00 0.00 0.00 3.36
61 62 4.986659 GGTCTCTTGCTTACGAACAACTTA 59.013 41.667 0.00 0.00 0.00 2.24
552 555 4.382345 TGTCACTGTCTCATGCATCTAG 57.618 45.455 0.00 0.00 0.00 2.43
727 731 5.398122 TGCTTGAAAGTTTCGAATTTAAGCG 59.602 36.000 23.21 6.08 40.45 4.68
775 779 8.407832 TGAAGCATAATTAGGAATGTGAACATG 58.592 33.333 0.32 0.00 36.56 3.21
1023 1028 6.627087 ATGGAGAGGTGAATTGACTCTTTA 57.373 37.500 0.00 0.00 41.38 1.85
1072 1077 7.014230 AGCTTCCAACACTGTACATATTTGTTT 59.986 33.333 0.00 0.00 37.28 2.83
1161 1169 3.364621 GTGTTTGGCGTGCAATCAATAAG 59.635 43.478 0.00 0.00 0.00 1.73
1170 1178 4.082787 CGTGCAATCAATAAGGAAAGTGGT 60.083 41.667 0.00 0.00 0.00 4.16
1208 1217 3.128349 CTGCTTGCCCAATATTTGCATC 58.872 45.455 9.57 6.46 34.51 3.91
1260 1269 4.688511 TGTTTATGTTGTTATGCCGGAC 57.311 40.909 5.05 0.00 0.00 4.79
1346 1360 8.656849 CCAGTTTGTATTGTTACACTCTGATAC 58.343 37.037 13.50 0.00 39.29 2.24
1409 1423 6.889722 CCATACCTGGATTTTCTTTCACCTTA 59.110 38.462 0.00 0.00 46.37 2.69
1771 1796 9.672673 AGTTGACTAATGTTTTATGTGCTCTAT 57.327 29.630 0.00 0.00 0.00 1.98
1796 1821 4.017958 TGGGGTTGTTAGGAATGCAATCTA 60.018 41.667 1.01 0.00 0.00 1.98
1820 1845 1.065636 CAGCTGATGAAGAGCAAGGGA 60.066 52.381 8.42 0.00 39.05 4.20
1832 1857 2.630098 GAGCAAGGGAAAGCCTTTTTCT 59.370 45.455 0.00 0.00 29.80 2.52
1910 1935 3.517602 TCAACGTGGATACTTTCATCGG 58.482 45.455 0.00 0.00 37.61 4.18
2015 2040 9.780186 ATTTATATGGTCTAGTGTTTTAGAGCC 57.220 33.333 9.07 3.47 43.93 4.70
2016 2041 8.548880 TTATATGGTCTAGTGTTTTAGAGCCT 57.451 34.615 9.07 3.47 43.93 4.58
2017 2042 9.650714 TTATATGGTCTAGTGTTTTAGAGCCTA 57.349 33.333 9.07 5.22 43.93 3.93
2018 2043 8.728596 ATATGGTCTAGTGTTTTAGAGCCTAT 57.271 34.615 9.07 6.89 43.93 2.57
2061 2086 4.794278 TGAAAGAGCGTTACCAGTATCA 57.206 40.909 0.00 0.00 0.00 2.15
2062 2087 5.142061 TGAAAGAGCGTTACCAGTATCAA 57.858 39.130 0.00 0.00 0.00 2.57
2063 2088 5.543714 TGAAAGAGCGTTACCAGTATCAAA 58.456 37.500 0.00 0.00 0.00 2.69
2064 2089 5.992829 TGAAAGAGCGTTACCAGTATCAAAA 59.007 36.000 0.00 0.00 0.00 2.44
2088 2113 0.376852 CCTCGTGTTGTGTGTGGTTG 59.623 55.000 0.00 0.00 0.00 3.77
2152 2193 4.280425 TCATAAGCTGTGGTTTCATGCAAA 59.720 37.500 0.00 0.00 0.00 3.68
2190 2232 6.215495 ACTCAAGAATCAAGTCTAGTAGCC 57.785 41.667 0.00 0.00 0.00 3.93
2273 2316 9.696917 ACAATTTGAGTGGTTTTATTGATCTTC 57.303 29.630 2.79 0.00 0.00 2.87
2296 2341 7.969690 TCTTTTTATTGATTATGCCTTCCCA 57.030 32.000 0.00 0.00 0.00 4.37
2334 2408 6.727824 AGTGTGCAGTAATGACAGATAAAC 57.272 37.500 0.00 0.00 0.00 2.01
2466 2540 6.371548 CGTTTGGAGATTTCAGATTGACCTTA 59.628 38.462 0.00 0.00 0.00 2.69
2467 2541 7.066284 CGTTTGGAGATTTCAGATTGACCTTAT 59.934 37.037 0.00 0.00 0.00 1.73
2468 2542 8.743714 GTTTGGAGATTTCAGATTGACCTTATT 58.256 33.333 0.00 0.00 0.00 1.40
2469 2543 8.884124 TTGGAGATTTCAGATTGACCTTATTT 57.116 30.769 0.00 0.00 0.00 1.40
2470 2544 9.973661 TTGGAGATTTCAGATTGACCTTATTTA 57.026 29.630 0.00 0.00 0.00 1.40
2475 2549 9.468532 GATTTCAGATTGACCTTATTTATTGGC 57.531 33.333 0.00 0.00 0.00 4.52
2476 2550 7.953005 TTCAGATTGACCTTATTTATTGGCA 57.047 32.000 0.00 0.00 0.00 4.92
2477 2551 8.537728 TTCAGATTGACCTTATTTATTGGCAT 57.462 30.769 0.00 0.00 0.00 4.40
2478 2552 8.537728 TCAGATTGACCTTATTTATTGGCATT 57.462 30.769 0.00 0.00 0.00 3.56
2479 2553 9.639563 TCAGATTGACCTTATTTATTGGCATTA 57.360 29.630 0.00 0.00 0.00 1.90
2480 2554 9.903682 CAGATTGACCTTATTTATTGGCATTAG 57.096 33.333 0.00 0.00 0.00 1.73
2481 2555 9.646522 AGATTGACCTTATTTATTGGCATTAGT 57.353 29.630 0.00 0.00 0.00 2.24
2543 2617 5.443185 TCATCTTTTGCTCTTTTGACCTG 57.557 39.130 0.00 0.00 0.00 4.00
2578 2652 7.936847 TCAGAAAATCTGCTAGTTACAAAGGAA 59.063 33.333 2.48 0.00 43.95 3.36
2695 2769 9.944376 TCAGTCTTAAACAGCTTAAATCATACT 57.056 29.630 0.00 0.00 0.00 2.12
2697 2771 9.384764 AGTCTTAAACAGCTTAAATCATACTCC 57.615 33.333 0.00 0.00 0.00 3.85
2698 2772 8.613482 GTCTTAAACAGCTTAAATCATACTCCC 58.387 37.037 0.00 0.00 0.00 4.30
2699 2773 8.548877 TCTTAAACAGCTTAAATCATACTCCCT 58.451 33.333 0.00 0.00 0.00 4.20
2700 2774 8.732746 TTAAACAGCTTAAATCATACTCCCTC 57.267 34.615 0.00 0.00 0.00 4.30
2701 2775 5.297569 ACAGCTTAAATCATACTCCCTCC 57.702 43.478 0.00 0.00 0.00 4.30
2702 2776 4.721776 ACAGCTTAAATCATACTCCCTCCA 59.278 41.667 0.00 0.00 0.00 3.86
2703 2777 5.370880 ACAGCTTAAATCATACTCCCTCCAT 59.629 40.000 0.00 0.00 0.00 3.41
2704 2778 5.936956 CAGCTTAAATCATACTCCCTCCATC 59.063 44.000 0.00 0.00 0.00 3.51
2705 2779 5.013599 AGCTTAAATCATACTCCCTCCATCC 59.986 44.000 0.00 0.00 0.00 3.51
2706 2780 5.804771 GCTTAAATCATACTCCCTCCATCCC 60.805 48.000 0.00 0.00 0.00 3.85
2707 2781 3.367280 AATCATACTCCCTCCATCCCA 57.633 47.619 0.00 0.00 0.00 4.37
2708 2782 2.887454 TCATACTCCCTCCATCCCAA 57.113 50.000 0.00 0.00 0.00 4.12
2709 2783 3.144068 TCATACTCCCTCCATCCCAAA 57.856 47.619 0.00 0.00 0.00 3.28
2710 2784 3.469859 TCATACTCCCTCCATCCCAAAA 58.530 45.455 0.00 0.00 0.00 2.44
2711 2785 4.054369 TCATACTCCCTCCATCCCAAAAT 58.946 43.478 0.00 0.00 0.00 1.82
2712 2786 5.231552 TCATACTCCCTCCATCCCAAAATA 58.768 41.667 0.00 0.00 0.00 1.40
2713 2787 5.674496 TCATACTCCCTCCATCCCAAAATAA 59.326 40.000 0.00 0.00 0.00 1.40
2714 2788 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
2715 2789 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
2716 2790 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
2717 2791 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
2718 2792 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
2719 2793 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
2720 2794 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
2721 2795 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
2722 2796 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
2723 2797 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
2724 2798 5.105756 CCATCCCAAAATAAGTGTCTCAACC 60.106 44.000 0.00 0.00 0.00 3.77
2725 2799 5.319043 TCCCAAAATAAGTGTCTCAACCT 57.681 39.130 0.00 0.00 0.00 3.50
2726 2800 5.701224 TCCCAAAATAAGTGTCTCAACCTT 58.299 37.500 0.00 0.00 0.00 3.50
2727 2801 6.843752 TCCCAAAATAAGTGTCTCAACCTTA 58.156 36.000 0.00 0.00 0.00 2.69
2728 2802 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
2729 2803 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
2730 2804 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
2731 2805 8.718734 CCAAAATAAGTGTCTCAACCTTAGTAC 58.281 37.037 0.00 0.00 0.00 2.73
2732 2806 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
2733 2807 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
2737 2811 8.747538 AAGTGTCTCAACCTTAGTACAATTTT 57.252 30.769 0.00 0.00 0.00 1.82
2738 2812 8.154649 AGTGTCTCAACCTTAGTACAATTTTG 57.845 34.615 0.00 0.00 0.00 2.44
2739 2813 7.773690 AGTGTCTCAACCTTAGTACAATTTTGT 59.226 33.333 1.08 1.08 44.86 2.83
2740 2814 9.048446 GTGTCTCAACCTTAGTACAATTTTGTA 57.952 33.333 0.00 0.00 42.35 2.41
2769 2843 8.649973 AAGTTAGTACAAAGTTGAGAGTTGAG 57.350 34.615 0.00 0.00 0.00 3.02
2770 2844 8.008513 AGTTAGTACAAAGTTGAGAGTTGAGA 57.991 34.615 0.00 0.00 0.00 3.27
2771 2845 7.921745 AGTTAGTACAAAGTTGAGAGTTGAGAC 59.078 37.037 0.00 0.00 0.00 3.36
2772 2846 6.222038 AGTACAAAGTTGAGAGTTGAGACA 57.778 37.500 0.00 0.00 0.00 3.41
2773 2847 6.043411 AGTACAAAGTTGAGAGTTGAGACAC 58.957 40.000 0.00 0.00 0.00 3.67
2774 2848 5.091261 ACAAAGTTGAGAGTTGAGACACT 57.909 39.130 0.00 0.00 0.00 3.55
2775 2849 5.491982 ACAAAGTTGAGAGTTGAGACACTT 58.508 37.500 0.00 0.00 0.00 3.16
2776 2850 6.640518 ACAAAGTTGAGAGTTGAGACACTTA 58.359 36.000 0.00 0.00 0.00 2.24
2777 2851 7.275920 ACAAAGTTGAGAGTTGAGACACTTAT 58.724 34.615 0.00 0.00 0.00 1.73
2778 2852 7.770897 ACAAAGTTGAGAGTTGAGACACTTATT 59.229 33.333 0.00 0.00 0.00 1.40
2779 2853 8.616076 CAAAGTTGAGAGTTGAGACACTTATTT 58.384 33.333 0.00 0.00 0.00 1.40
2780 2854 8.738645 AAGTTGAGAGTTGAGACACTTATTTT 57.261 30.769 0.00 0.00 0.00 1.82
2781 2855 8.147642 AGTTGAGAGTTGAGACACTTATTTTG 57.852 34.615 0.00 0.00 0.00 2.44
2782 2856 7.227512 AGTTGAGAGTTGAGACACTTATTTTGG 59.772 37.037 0.00 0.00 0.00 3.28
2783 2857 5.997746 TGAGAGTTGAGACACTTATTTTGGG 59.002 40.000 0.00 0.00 0.00 4.12
2784 2858 6.183361 TGAGAGTTGAGACACTTATTTTGGGA 60.183 38.462 0.00 0.00 0.00 4.37
2785 2859 5.998363 AGAGTTGAGACACTTATTTTGGGAC 59.002 40.000 0.00 0.00 0.00 4.46
2786 2860 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2787 2861 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2788 2862 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2789 2863 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2790 2864 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2791 2865 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2792 2866 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2793 2867 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
2794 2868 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
3008 3082 0.527565 CTATGGGCGCCATTATTGCC 59.472 55.000 30.85 8.62 42.23 4.52
3103 3177 3.017442 GTTCCCCTATTCTCTTGGTTGC 58.983 50.000 0.00 0.00 0.00 4.17
3123 3197 5.163281 TGCTGTGCCCAATTTAATTGAAT 57.837 34.783 18.13 0.00 42.83 2.57
3124 3198 5.558818 TGCTGTGCCCAATTTAATTGAATT 58.441 33.333 18.13 2.50 42.83 2.17
3318 3396 4.761739 TCTTCCAAGTAATTGCTCAAGTGG 59.238 41.667 5.82 5.82 0.00 4.00
3481 3559 5.538877 TCAGGTAGGATCTTTTGATACCCT 58.461 41.667 0.00 0.00 40.70 4.34
3483 3561 7.136885 TCAGGTAGGATCTTTTGATACCCTTA 58.863 38.462 0.00 0.00 40.70 2.69
3484 3562 7.070821 TCAGGTAGGATCTTTTGATACCCTTAC 59.929 40.741 0.00 0.00 40.70 2.34
3485 3563 7.071321 CAGGTAGGATCTTTTGATACCCTTACT 59.929 40.741 0.00 0.00 40.70 2.24
3511 3595 5.305644 TCCAGTTCTGAGATTATTAGGAGCC 59.694 44.000 1.00 0.00 0.00 4.70
3560 3644 4.569943 TCTCAACAGTCTGGAAGCATAAC 58.430 43.478 4.53 0.00 0.00 1.89
3622 3706 6.202379 GCTGAACCTTATTTCGGTAAGTATCC 59.798 42.308 0.00 0.00 34.74 2.59
3634 3718 5.241064 TCGGTAAGTATCCTATCAGCAGTTC 59.759 44.000 0.00 0.00 0.00 3.01
3636 3720 5.304614 GGTAAGTATCCTATCAGCAGTTCCA 59.695 44.000 0.00 0.00 0.00 3.53
3641 3725 3.445008 TCCTATCAGCAGTTCCAGTCTT 58.555 45.455 0.00 0.00 0.00 3.01
3642 3726 3.449018 TCCTATCAGCAGTTCCAGTCTTC 59.551 47.826 0.00 0.00 0.00 2.87
3646 3730 1.902508 CAGCAGTTCCAGTCTTCCCTA 59.097 52.381 0.00 0.00 0.00 3.53
3657 3741 4.286291 CCAGTCTTCCCTAAAAGTAGTGGT 59.714 45.833 0.00 0.00 30.46 4.16
3677 3761 6.070596 AGTGGTGAAGTGATCATGTTCAGATA 60.071 38.462 18.81 9.24 40.97 1.98
3706 3790 6.648879 TTAGCCTCAACTTTTACATTTGCT 57.351 33.333 0.00 0.00 0.00 3.91
3707 3791 4.874970 AGCCTCAACTTTTACATTTGCTG 58.125 39.130 0.00 0.00 0.00 4.41
3731 3815 2.054453 GCTTTGCTCATGGGACCCC 61.054 63.158 8.45 2.69 0.00 4.95
3803 3887 9.740239 CAGGTCATAATATTTCCAATGTCTTTG 57.260 33.333 0.00 0.00 34.93 2.77
3807 3891 9.752961 TCATAATATTTCCAATGTCTTTGCATG 57.247 29.630 0.00 0.00 33.73 4.06
3811 3895 1.546923 TCCAATGTCTTTGCATGCCAG 59.453 47.619 16.68 11.47 33.73 4.85
3819 3903 4.951715 TGTCTTTGCATGCCAGATTAGATT 59.048 37.500 16.68 0.00 0.00 2.40
3831 3915 8.185506 TGCCAGATTAGATTATGCATTGATTT 57.814 30.769 3.54 0.00 0.00 2.17
3840 3924 5.635417 TTATGCATTGATTTGGTTCGTGA 57.365 34.783 3.54 0.00 0.00 4.35
3880 3964 4.694760 ATGTCACAGCCATGCTTCTATA 57.305 40.909 0.00 0.00 36.40 1.31
3950 4034 4.974591 CCATCAGGTTTGTCGATTTTCTC 58.025 43.478 0.00 0.00 0.00 2.87
3951 4035 4.455533 CCATCAGGTTTGTCGATTTTCTCA 59.544 41.667 0.00 0.00 0.00 3.27
3952 4036 5.385617 CATCAGGTTTGTCGATTTTCTCAC 58.614 41.667 0.00 0.00 0.00 3.51
3953 4037 4.447290 TCAGGTTTGTCGATTTTCTCACA 58.553 39.130 0.00 0.00 0.00 3.58
3954 4038 5.063204 TCAGGTTTGTCGATTTTCTCACAT 58.937 37.500 0.00 0.00 0.00 3.21
3955 4039 5.049474 TCAGGTTTGTCGATTTTCTCACATG 60.049 40.000 0.00 0.00 0.00 3.21
3956 4040 3.914364 GGTTTGTCGATTTTCTCACATGC 59.086 43.478 0.00 0.00 0.00 4.06
3957 4041 4.536065 GTTTGTCGATTTTCTCACATGCA 58.464 39.130 0.00 0.00 0.00 3.96
3958 4042 3.811722 TGTCGATTTTCTCACATGCAC 57.188 42.857 0.00 0.00 0.00 4.57
3959 4043 3.137533 TGTCGATTTTCTCACATGCACA 58.862 40.909 0.00 0.00 0.00 4.57
3960 4044 3.752747 TGTCGATTTTCTCACATGCACAT 59.247 39.130 0.00 0.00 0.00 3.21
3961 4045 4.142838 TGTCGATTTTCTCACATGCACATC 60.143 41.667 0.00 0.00 0.00 3.06
3975 4063 7.067737 TCACATGCACATCTGTATCATTTTCAT 59.932 33.333 0.00 0.00 0.00 2.57
4028 4116 1.673168 GATTCTGCAGTTGGGGCTAG 58.327 55.000 14.67 0.00 0.00 3.42
4032 4120 2.262774 CTGCAGTTGGGGCTAGAGGG 62.263 65.000 5.25 0.00 0.00 4.30
4114 4202 3.187700 GCAGTCAATAACTCGTACCTGG 58.812 50.000 0.00 0.00 35.45 4.45
4165 4253 0.723981 CGTGCAAAGGAAGCTAGAGC 59.276 55.000 0.00 0.00 42.49 4.09
4218 4306 2.437343 GCTGACGAAGGAGAACGCG 61.437 63.158 3.53 3.53 0.00 6.01
4230 4318 1.741770 GAACGCGATGAACCAGCCT 60.742 57.895 15.93 0.00 0.00 4.58
4262 4350 1.451504 CACCAGCACCAGTGAGGAA 59.548 57.895 14.31 0.00 41.22 3.36
4283 4371 7.388437 AGGAACAACGGTGAGTATTATTGTTA 58.612 34.615 7.88 0.00 39.63 2.41
4303 4398 7.843490 TGTTAGTTCCTAAATCATGTAGTGC 57.157 36.000 0.00 0.00 0.00 4.40
4304 4399 6.821665 TGTTAGTTCCTAAATCATGTAGTGCC 59.178 38.462 0.00 0.00 0.00 5.01
4321 4416 2.469516 CCGTACTTGGAATGGCGCC 61.470 63.158 22.73 22.73 0.00 6.53
4333 4429 1.460273 ATGGCGCCTCCGTTTTGTTT 61.460 50.000 29.70 0.00 37.80 2.83
4334 4430 1.660264 GGCGCCTCCGTTTTGTTTG 60.660 57.895 22.15 0.00 36.67 2.93
4340 4436 2.543031 GCCTCCGTTTTGTTTGAAGTCC 60.543 50.000 0.00 0.00 0.00 3.85
4353 4449 2.577763 GAAGTCCCGGATTTTGCGCG 62.578 60.000 0.73 0.00 0.00 6.86
4365 4461 0.442310 TTTGCGCGTCTCTAATGCAC 59.558 50.000 8.43 0.00 40.11 4.57
4368 4464 0.042708 GCGCGTCTCTAATGCACATG 60.043 55.000 8.43 0.00 40.11 3.21
4375 4471 4.318333 CGTCTCTAATGCACATGATTTCCG 60.318 45.833 0.00 0.00 0.00 4.30
4400 4502 1.609501 AGGGAACTACCTCGCTGCA 60.610 57.895 0.00 0.00 40.61 4.41
4631 4736 2.279517 CGCACCTACGAGATGCCC 60.280 66.667 0.00 0.00 28.16 5.36
4686 4791 0.921896 CTGAGGACCATCCCACCAAT 59.078 55.000 0.00 0.00 37.19 3.16
4713 4818 3.790437 CCTGCCTGCCGTCCATCT 61.790 66.667 0.00 0.00 0.00 2.90
4714 4819 2.513204 CTGCCTGCCGTCCATCTG 60.513 66.667 0.00 0.00 0.00 2.90
4715 4820 4.783621 TGCCTGCCGTCCATCTGC 62.784 66.667 0.00 0.00 0.00 4.26
4722 4827 2.190578 CGTCCATCTGCCCCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
4732 4837 2.821685 CCCCCTTCGCATCATCGA 59.178 61.111 0.00 0.00 36.60 3.59
4752 4857 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
4816 4924 3.219281 GCCAAGTTTGTGTCTCCCTTTA 58.781 45.455 0.00 0.00 0.00 1.85
4817 4925 3.826729 GCCAAGTTTGTGTCTCCCTTTAT 59.173 43.478 0.00 0.00 0.00 1.40
4818 4926 4.082733 GCCAAGTTTGTGTCTCCCTTTATC 60.083 45.833 0.00 0.00 0.00 1.75
4819 4927 4.154195 CCAAGTTTGTGTCTCCCTTTATCG 59.846 45.833 0.00 0.00 0.00 2.92
4820 4928 4.618920 AGTTTGTGTCTCCCTTTATCGT 57.381 40.909 0.00 0.00 0.00 3.73
4822 4930 4.995487 AGTTTGTGTCTCCCTTTATCGTTC 59.005 41.667 0.00 0.00 0.00 3.95
4875 4995 4.373116 GTCCTGGCGTCGCTTGGA 62.373 66.667 21.47 21.47 0.00 3.53
4876 4996 4.069232 TCCTGGCGTCGCTTGGAG 62.069 66.667 21.47 11.58 0.00 3.86
4902 5022 2.452505 GGGAGAGTGAAGAGTAGTGCT 58.547 52.381 0.00 0.00 0.00 4.40
4926 5046 1.604604 TTCCTTTGGGCTTTCGAGTG 58.395 50.000 0.00 0.00 0.00 3.51
4928 5048 0.875059 CCTTTGGGCTTTCGAGTGTC 59.125 55.000 0.00 0.00 0.00 3.67
4929 5049 0.512952 CTTTGGGCTTTCGAGTGTCG 59.487 55.000 0.00 0.00 42.10 4.35
4969 5091 2.955477 TGCTTTGTGATTTGTGTGCA 57.045 40.000 0.00 0.00 0.00 4.57
4970 5092 3.242549 TGCTTTGTGATTTGTGTGCAA 57.757 38.095 0.00 0.00 0.00 4.08
4981 5107 2.949451 TGTGTGCAAAACCAACGATT 57.051 40.000 0.00 0.00 0.00 3.34
4999 5128 0.436913 TTGCTCGCGTTTATGTGACG 59.563 50.000 5.77 0.00 43.04 4.35
5005 5134 1.720233 CGCGTTTATGTGACGTTGTGG 60.720 52.381 0.00 0.00 42.22 4.17
5006 5135 1.262151 GCGTTTATGTGACGTTGTGGT 59.738 47.619 0.00 0.00 42.22 4.16
5008 5137 3.059733 GCGTTTATGTGACGTTGTGGTTA 60.060 43.478 0.00 0.00 42.22 2.85
5009 5138 4.552378 GCGTTTATGTGACGTTGTGGTTAA 60.552 41.667 0.00 0.00 42.22 2.01
5019 5166 7.332926 TGTGACGTTGTGGTTAAACTAAACTTA 59.667 33.333 0.00 0.00 0.00 2.24
5049 5221 3.343972 TTGCTTGCTCGCAACCTC 58.656 55.556 8.77 0.00 44.30 3.85
5050 5222 2.606961 TTGCTTGCTCGCAACCTCG 61.607 57.895 8.77 0.00 44.30 4.63
5051 5223 4.451652 GCTTGCTCGCAACCTCGC 62.452 66.667 0.00 0.00 0.00 5.03
5052 5224 3.043713 CTTGCTCGCAACCTCGCA 61.044 61.111 0.00 0.00 0.00 5.10
5053 5225 2.358615 TTGCTCGCAACCTCGCAT 60.359 55.556 0.00 0.00 31.77 4.73
5054 5226 2.573341 CTTGCTCGCAACCTCGCATG 62.573 60.000 0.00 0.00 31.77 4.06
5055 5227 3.869272 GCTCGCAACCTCGCATGG 61.869 66.667 0.00 0.00 0.00 3.66
5056 5228 2.434884 CTCGCAACCTCGCATGGT 60.435 61.111 0.00 0.00 43.11 3.55
5077 5249 0.107312 AGACATGTCCAGCATCTGCC 60.107 55.000 22.21 0.00 43.38 4.85
5081 5253 0.180642 ATGTCCAGCATCTGCCTGAG 59.819 55.000 0.00 0.00 43.38 3.35
5107 5291 4.724697 CGCGGTTGCTGCTTCGTG 62.725 66.667 0.00 5.21 39.65 4.35
5118 5302 2.724839 GCTGCTTCGTGTCCGTATTTTG 60.725 50.000 0.00 0.00 35.01 2.44
5126 5310 5.288015 TCGTGTCCGTATTTTGTTTACTCA 58.712 37.500 0.00 0.00 35.01 3.41
5127 5311 5.927689 TCGTGTCCGTATTTTGTTTACTCAT 59.072 36.000 0.00 0.00 35.01 2.90
5128 5312 6.089820 TCGTGTCCGTATTTTGTTTACTCATC 59.910 38.462 0.00 0.00 35.01 2.92
5129 5313 6.128769 CGTGTCCGTATTTTGTTTACTCATCA 60.129 38.462 0.00 0.00 0.00 3.07
5147 5331 8.128322 ACTCATCATGTGGGTATTACTCTATC 57.872 38.462 0.00 0.00 40.65 2.08
5149 5333 8.127150 TCATCATGTGGGTATTACTCTATCTG 57.873 38.462 0.00 0.00 0.00 2.90
5150 5334 6.346477 TCATGTGGGTATTACTCTATCTGC 57.654 41.667 0.00 0.00 0.00 4.26
5181 5373 3.686760 CGAGAGCTGTCCCTGTCA 58.313 61.111 5.11 0.00 0.00 3.58
5182 5374 2.197250 CGAGAGCTGTCCCTGTCAT 58.803 57.895 5.11 0.00 0.00 3.06
5183 5375 0.179116 CGAGAGCTGTCCCTGTCATG 60.179 60.000 5.11 0.00 0.00 3.07
5185 5377 0.252421 AGAGCTGTCCCTGTCATGGA 60.252 55.000 0.00 0.00 0.00 3.41
5186 5378 0.835941 GAGCTGTCCCTGTCATGGAT 59.164 55.000 0.00 0.00 33.65 3.41
5187 5379 0.545171 AGCTGTCCCTGTCATGGATG 59.455 55.000 0.00 0.00 33.65 3.51
5189 5381 0.465097 CTGTCCCTGTCATGGATGGC 60.465 60.000 0.00 0.00 33.65 4.40
5190 5382 1.524621 GTCCCTGTCATGGATGGCG 60.525 63.158 0.00 0.00 34.48 5.69
5191 5383 1.995066 TCCCTGTCATGGATGGCGT 60.995 57.895 0.00 0.00 34.48 5.68
5195 5392 2.038426 CCCTGTCATGGATGGCGTATTA 59.962 50.000 0.00 0.00 34.48 0.98
5201 5398 6.734137 TGTCATGGATGGCGTATTATTTTTC 58.266 36.000 0.00 0.00 34.48 2.29
5218 5415 0.038892 TTCCAGTTGCGAGTACCGAC 60.039 55.000 7.77 0.00 41.76 4.79
5219 5416 1.800315 CCAGTTGCGAGTACCGACG 60.800 63.158 7.77 4.48 41.76 5.12
5220 5417 1.208358 CAGTTGCGAGTACCGACGA 59.792 57.895 0.00 0.00 41.76 4.20
5221 5418 0.793478 CAGTTGCGAGTACCGACGAG 60.793 60.000 0.00 0.00 41.76 4.18
5223 5420 2.693762 TTGCGAGTACCGACGAGGG 61.694 63.158 0.00 1.14 46.96 4.30
5224 5421 4.549516 GCGAGTACCGACGAGGGC 62.550 72.222 0.00 0.00 46.96 5.19
5225 5422 4.233635 CGAGTACCGACGAGGGCG 62.234 72.222 0.00 0.00 46.96 6.13
5226 5423 2.821366 GAGTACCGACGAGGGCGA 60.821 66.667 0.00 0.00 46.96 5.54
5227 5424 3.105852 GAGTACCGACGAGGGCGAC 62.106 68.421 0.00 0.00 46.96 5.19
5312 5541 1.142778 GACTACGTAGCAGCAGCAGC 61.143 60.000 22.40 0.46 45.49 5.25
5313 5542 1.153765 CTACGTAGCAGCAGCAGCA 60.154 57.895 12.92 0.00 45.49 4.41
5314 5543 1.144565 CTACGTAGCAGCAGCAGCAG 61.145 60.000 12.92 5.55 45.49 4.24
5315 5544 1.877576 TACGTAGCAGCAGCAGCAGT 61.878 55.000 12.92 11.00 45.49 4.40
5316 5545 1.153765 CGTAGCAGCAGCAGCAGTA 60.154 57.895 12.92 0.00 45.49 2.74
5317 5546 1.144565 CGTAGCAGCAGCAGCAGTAG 61.145 60.000 12.92 0.00 45.49 2.57
5330 5581 1.282157 AGCAGTAGGTAGGCCTTTTGG 59.718 52.381 12.58 0.00 44.18 3.28
5367 5630 0.392998 CCGCTGCCAAACCTACATCT 60.393 55.000 0.00 0.00 0.00 2.90
5375 5638 5.192927 TGCCAAACCTACATCTATCCTTTG 58.807 41.667 0.00 0.00 0.00 2.77
5382 5645 1.202698 ACATCTATCCTTTGGCCGCTC 60.203 52.381 0.00 0.00 0.00 5.03
5384 5647 2.203015 TATCCTTTGGCCGCTCGC 60.203 61.111 0.00 0.00 0.00 5.03
5402 5669 2.012902 GCCTGCATTCACCAGATGGC 62.013 60.000 0.00 0.00 39.32 4.40
5405 5672 0.681887 TGCATTCACCAGATGGCCTG 60.682 55.000 3.32 0.00 42.55 4.85
5406 5673 2.012902 GCATTCACCAGATGGCCTGC 62.013 60.000 3.32 0.00 41.57 4.85
5407 5674 0.681887 CATTCACCAGATGGCCTGCA 60.682 55.000 3.32 0.00 41.57 4.41
5408 5675 0.260816 ATTCACCAGATGGCCTGCAT 59.739 50.000 3.32 0.00 41.57 3.96
5409 5676 0.040058 TTCACCAGATGGCCTGCATT 59.960 50.000 3.32 0.00 41.57 3.56
5424 5691 0.671472 GCATTCACCAAAAGCTGCCC 60.671 55.000 0.00 0.00 0.00 5.36
5425 5692 0.037046 CATTCACCAAAAGCTGCCCC 60.037 55.000 0.00 0.00 0.00 5.80
5466 5767 4.982241 TCTTCTTGACCAGGAGAAACAT 57.018 40.909 0.00 0.00 33.62 2.71
5482 5783 3.676605 ATCGTCGTCCCGTGTGCA 61.677 61.111 0.00 0.00 0.00 4.57
5488 5789 0.816018 TCGTCCCGTGTGCATTGTTT 60.816 50.000 0.00 0.00 0.00 2.83
5489 5790 0.869068 CGTCCCGTGTGCATTGTTTA 59.131 50.000 0.00 0.00 0.00 2.01
5490 5791 1.399215 CGTCCCGTGTGCATTGTTTAC 60.399 52.381 0.00 0.00 0.00 2.01
5491 5792 0.869068 TCCCGTGTGCATTGTTTACG 59.131 50.000 0.00 0.00 34.78 3.18
5492 5793 3.376347 CCGTGTGCATTGTTTACGG 57.624 52.632 11.34 11.34 46.66 4.02
5493 5794 0.727793 CCGTGTGCATTGTTTACGGC 60.728 55.000 12.36 0.00 46.19 5.68
5494 5795 0.040870 CGTGTGCATTGTTTACGGCA 60.041 50.000 0.00 0.00 0.00 5.69
5497 5798 2.720659 TGCATTGTTTACGGCACCA 58.279 47.368 0.00 0.00 0.00 4.17
5498 5799 1.252175 TGCATTGTTTACGGCACCAT 58.748 45.000 0.00 0.00 0.00 3.55
5499 5800 1.067985 TGCATTGTTTACGGCACCATG 60.068 47.619 0.00 0.00 0.00 3.66
5500 5801 1.627879 CATTGTTTACGGCACCATGC 58.372 50.000 0.00 0.00 44.08 4.06
5501 5802 1.202114 CATTGTTTACGGCACCATGCT 59.798 47.619 0.13 0.00 44.28 3.79
5502 5803 0.878416 TTGTTTACGGCACCATGCTC 59.122 50.000 0.13 0.00 44.28 4.26
5503 5804 0.958382 TGTTTACGGCACCATGCTCC 60.958 55.000 0.13 0.00 44.28 4.70
5504 5805 0.958382 GTTTACGGCACCATGCTCCA 60.958 55.000 0.13 0.00 44.28 3.86
5505 5806 0.958382 TTTACGGCACCATGCTCCAC 60.958 55.000 0.13 0.00 44.28 4.02
5506 5807 3.657448 TACGGCACCATGCTCCACG 62.657 63.158 0.13 0.00 44.28 4.94
5509 5810 2.125147 GCACCATGCTCCACGCTA 60.125 61.111 0.00 0.00 40.96 4.26
5510 5811 2.464459 GCACCATGCTCCACGCTAC 61.464 63.158 0.00 0.00 40.96 3.58
5511 5812 2.167219 CACCATGCTCCACGCTACG 61.167 63.158 0.00 0.00 40.11 3.51
5512 5813 2.184322 CCATGCTCCACGCTACGT 59.816 61.111 0.00 0.00 42.36 3.57
5521 5822 3.387091 ACGCTACGTGATGGCCCA 61.387 61.111 0.00 0.00 39.18 5.36
5522 5823 2.108976 CGCTACGTGATGGCCCAT 59.891 61.111 0.00 0.00 0.00 4.00
5523 5824 1.523711 CGCTACGTGATGGCCCATT 60.524 57.895 0.00 0.00 0.00 3.16
5524 5825 1.095228 CGCTACGTGATGGCCCATTT 61.095 55.000 0.00 0.00 0.00 2.32
5525 5826 1.102978 GCTACGTGATGGCCCATTTT 58.897 50.000 0.00 0.00 0.00 1.82
5526 5827 1.476488 GCTACGTGATGGCCCATTTTT 59.524 47.619 0.00 0.00 0.00 1.94
5527 5828 2.479560 GCTACGTGATGGCCCATTTTTC 60.480 50.000 0.00 0.00 0.00 2.29
5528 5829 1.923356 ACGTGATGGCCCATTTTTCT 58.077 45.000 0.00 0.00 0.00 2.52
5529 5830 2.247358 ACGTGATGGCCCATTTTTCTT 58.753 42.857 0.00 0.00 0.00 2.52
5530 5831 2.632512 ACGTGATGGCCCATTTTTCTTT 59.367 40.909 0.00 0.00 0.00 2.52
5531 5832 3.253230 CGTGATGGCCCATTTTTCTTTC 58.747 45.455 0.00 0.00 0.00 2.62
5532 5833 3.056607 CGTGATGGCCCATTTTTCTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
5533 5834 4.561326 CGTGATGGCCCATTTTTCTTTCTT 60.561 41.667 0.00 0.00 0.00 2.52
5534 5835 5.308014 GTGATGGCCCATTTTTCTTTCTTT 58.692 37.500 0.00 0.00 0.00 2.52
5535 5836 5.764686 GTGATGGCCCATTTTTCTTTCTTTT 59.235 36.000 0.00 0.00 0.00 2.27
5536 5837 5.997129 TGATGGCCCATTTTTCTTTCTTTTC 59.003 36.000 0.00 0.00 0.00 2.29
5537 5838 4.713553 TGGCCCATTTTTCTTTCTTTTCC 58.286 39.130 0.00 0.00 0.00 3.13
5538 5839 4.164988 TGGCCCATTTTTCTTTCTTTTCCA 59.835 37.500 0.00 0.00 0.00 3.53
5539 5840 4.756642 GGCCCATTTTTCTTTCTTTTCCAG 59.243 41.667 0.00 0.00 0.00 3.86
5540 5841 4.214119 GCCCATTTTTCTTTCTTTTCCAGC 59.786 41.667 0.00 0.00 0.00 4.85
5541 5842 5.614308 CCCATTTTTCTTTCTTTTCCAGCT 58.386 37.500 0.00 0.00 0.00 4.24
5542 5843 6.057533 CCCATTTTTCTTTCTTTTCCAGCTT 58.942 36.000 0.00 0.00 0.00 3.74
5543 5844 6.543465 CCCATTTTTCTTTCTTTTCCAGCTTT 59.457 34.615 0.00 0.00 0.00 3.51
5544 5845 7.254898 CCCATTTTTCTTTCTTTTCCAGCTTTC 60.255 37.037 0.00 0.00 0.00 2.62
5545 5846 7.280652 CCATTTTTCTTTCTTTTCCAGCTTTCA 59.719 33.333 0.00 0.00 0.00 2.69
5546 5847 8.667463 CATTTTTCTTTCTTTTCCAGCTTTCAA 58.333 29.630 0.00 0.00 0.00 2.69
5547 5848 7.595311 TTTTCTTTCTTTTCCAGCTTTCAAC 57.405 32.000 0.00 0.00 0.00 3.18
5548 5849 6.530019 TTCTTTCTTTTCCAGCTTTCAACT 57.470 33.333 0.00 0.00 0.00 3.16
5549 5850 6.136541 TCTTTCTTTTCCAGCTTTCAACTC 57.863 37.500 0.00 0.00 0.00 3.01
5550 5851 5.652014 TCTTTCTTTTCCAGCTTTCAACTCA 59.348 36.000 0.00 0.00 0.00 3.41
5551 5852 5.913137 TTCTTTTCCAGCTTTCAACTCAA 57.087 34.783 0.00 0.00 0.00 3.02
5552 5853 6.469782 TTCTTTTCCAGCTTTCAACTCAAT 57.530 33.333 0.00 0.00 0.00 2.57
5553 5854 7.581213 TTCTTTTCCAGCTTTCAACTCAATA 57.419 32.000 0.00 0.00 0.00 1.90
5554 5855 7.206981 TCTTTTCCAGCTTTCAACTCAATAG 57.793 36.000 0.00 0.00 0.00 1.73
5555 5856 6.998074 TCTTTTCCAGCTTTCAACTCAATAGA 59.002 34.615 0.00 0.00 0.00 1.98
5557 5858 4.836825 TCCAGCTTTCAACTCAATAGAGG 58.163 43.478 0.00 0.00 46.44 3.69
5558 5859 4.287067 TCCAGCTTTCAACTCAATAGAGGT 59.713 41.667 0.00 0.00 44.47 3.85
5559 5860 5.006386 CCAGCTTTCAACTCAATAGAGGTT 58.994 41.667 0.00 0.00 39.24 3.50
5560 5861 5.474876 CCAGCTTTCAACTCAATAGAGGTTT 59.525 40.000 0.00 0.00 39.24 3.27
5561 5862 6.376978 CAGCTTTCAACTCAATAGAGGTTTG 58.623 40.000 0.00 0.00 39.24 2.93
5562 5863 5.474876 AGCTTTCAACTCAATAGAGGTTTGG 59.525 40.000 0.00 0.00 39.24 3.28
5563 5864 5.703876 CTTTCAACTCAATAGAGGTTTGGC 58.296 41.667 0.00 0.00 39.24 4.52
5564 5865 4.365514 TCAACTCAATAGAGGTTTGGCA 57.634 40.909 0.00 0.00 39.24 4.92
5565 5866 4.922206 TCAACTCAATAGAGGTTTGGCAT 58.078 39.130 0.00 0.00 39.24 4.40
5566 5867 5.324409 TCAACTCAATAGAGGTTTGGCATT 58.676 37.500 0.00 0.00 39.24 3.56
5567 5868 5.774690 TCAACTCAATAGAGGTTTGGCATTT 59.225 36.000 0.00 0.00 39.24 2.32
5568 5869 6.267471 TCAACTCAATAGAGGTTTGGCATTTT 59.733 34.615 0.00 0.00 39.24 1.82
5569 5870 6.272822 ACTCAATAGAGGTTTGGCATTTTC 57.727 37.500 0.00 0.00 46.44 2.29
5570 5871 5.774690 ACTCAATAGAGGTTTGGCATTTTCA 59.225 36.000 0.00 0.00 46.44 2.69
5571 5872 6.438425 ACTCAATAGAGGTTTGGCATTTTCAT 59.562 34.615 0.00 0.00 46.44 2.57
5572 5873 6.632909 TCAATAGAGGTTTGGCATTTTCATG 58.367 36.000 0.00 0.00 0.00 3.07
5573 5874 3.967332 AGAGGTTTGGCATTTTCATGG 57.033 42.857 0.00 0.00 0.00 3.66
5574 5875 3.242011 AGAGGTTTGGCATTTTCATGGT 58.758 40.909 0.00 0.00 0.00 3.55
5575 5876 3.647590 AGAGGTTTGGCATTTTCATGGTT 59.352 39.130 0.00 0.00 0.00 3.67
5576 5877 4.102996 AGAGGTTTGGCATTTTCATGGTTT 59.897 37.500 0.00 0.00 0.00 3.27
5577 5878 4.136051 AGGTTTGGCATTTTCATGGTTTG 58.864 39.130 0.00 0.00 0.00 2.93
5578 5879 3.304592 GGTTTGGCATTTTCATGGTTTGC 60.305 43.478 0.00 0.00 0.00 3.68
5580 5881 1.077915 GGCATTTTCATGGTTTGCCG 58.922 50.000 12.06 0.00 42.97 5.69
5581 5882 0.443478 GCATTTTCATGGTTTGCCGC 59.557 50.000 0.00 0.00 37.67 6.53
5582 5883 1.940752 GCATTTTCATGGTTTGCCGCT 60.941 47.619 0.00 0.00 37.67 5.52
5583 5884 2.415776 CATTTTCATGGTTTGCCGCTT 58.584 42.857 0.00 0.00 37.67 4.68
5584 5885 2.611225 TTTTCATGGTTTGCCGCTTT 57.389 40.000 0.00 0.00 37.67 3.51
5585 5886 3.735237 TTTTCATGGTTTGCCGCTTTA 57.265 38.095 0.00 0.00 37.67 1.85
5586 5887 2.715737 TTCATGGTTTGCCGCTTTAC 57.284 45.000 0.00 0.00 37.67 2.01
5587 5888 0.885196 TCATGGTTTGCCGCTTTACC 59.115 50.000 0.00 0.00 37.67 2.85
5588 5889 0.600557 CATGGTTTGCCGCTTTACCA 59.399 50.000 12.21 12.21 44.17 3.25
5589 5890 0.601057 ATGGTTTGCCGCTTTACCAC 59.399 50.000 12.11 0.00 42.96 4.16
5590 5891 0.752009 TGGTTTGCCGCTTTACCACA 60.752 50.000 7.46 0.00 35.82 4.17
5591 5892 0.601057 GGTTTGCCGCTTTACCACAT 59.399 50.000 0.00 0.00 0.00 3.21
5592 5893 1.668628 GGTTTGCCGCTTTACCACATG 60.669 52.381 0.00 0.00 0.00 3.21
5593 5894 0.600557 TTTGCCGCTTTACCACATGG 59.399 50.000 0.00 0.00 42.17 3.66
5605 5906 1.515081 CCACATGGTTCGTTTACGGT 58.485 50.000 0.00 0.00 40.29 4.83
5606 5907 1.461897 CCACATGGTTCGTTTACGGTC 59.538 52.381 0.00 0.00 40.29 4.79
5607 5908 1.125384 CACATGGTTCGTTTACGGTCG 59.875 52.381 0.00 0.00 40.29 4.79
5608 5909 0.094046 CATGGTTCGTTTACGGTCGC 59.906 55.000 2.09 0.00 40.29 5.19
5609 5910 0.319727 ATGGTTCGTTTACGGTCGCA 60.320 50.000 2.09 0.00 40.29 5.10
5610 5911 0.529337 TGGTTCGTTTACGGTCGCAA 60.529 50.000 2.09 0.00 40.29 4.85
5611 5912 0.111134 GGTTCGTTTACGGTCGCAAC 60.111 55.000 2.09 0.00 40.29 4.17
5612 5913 0.854705 GTTCGTTTACGGTCGCAACT 59.145 50.000 2.09 0.00 40.29 3.16
5613 5914 2.050691 GTTCGTTTACGGTCGCAACTA 58.949 47.619 2.09 0.00 40.29 2.24
5614 5915 1.967762 TCGTTTACGGTCGCAACTAG 58.032 50.000 2.09 0.00 40.29 2.57
5615 5916 1.535028 TCGTTTACGGTCGCAACTAGA 59.465 47.619 0.00 0.00 40.29 2.43
5616 5917 2.031245 TCGTTTACGGTCGCAACTAGAA 60.031 45.455 0.00 0.00 40.29 2.10
5617 5918 2.089581 CGTTTACGGTCGCAACTAGAAC 59.910 50.000 0.00 0.00 35.37 3.01
5618 5919 3.052036 GTTTACGGTCGCAACTAGAACA 58.948 45.455 0.00 0.00 0.00 3.18
5619 5920 3.367992 TTACGGTCGCAACTAGAACAA 57.632 42.857 0.00 0.00 0.00 2.83
5620 5921 2.228138 ACGGTCGCAACTAGAACAAA 57.772 45.000 0.00 0.00 0.00 2.83
5621 5922 2.553086 ACGGTCGCAACTAGAACAAAA 58.447 42.857 0.00 0.00 0.00 2.44
5622 5923 2.937799 ACGGTCGCAACTAGAACAAAAA 59.062 40.909 0.00 0.00 0.00 1.94
5623 5924 3.562557 ACGGTCGCAACTAGAACAAAAAT 59.437 39.130 0.00 0.00 0.00 1.82
5624 5925 4.148891 CGGTCGCAACTAGAACAAAAATC 58.851 43.478 0.00 0.00 0.00 2.17
5625 5926 4.084013 CGGTCGCAACTAGAACAAAAATCT 60.084 41.667 0.00 0.00 0.00 2.40
5626 5927 5.560183 CGGTCGCAACTAGAACAAAAATCTT 60.560 40.000 0.00 0.00 0.00 2.40
5627 5928 5.851703 GGTCGCAACTAGAACAAAAATCTTC 59.148 40.000 0.00 0.00 0.00 2.87
5628 5929 6.427150 GTCGCAACTAGAACAAAAATCTTCA 58.573 36.000 0.00 0.00 0.00 3.02
5629 5930 7.078228 GTCGCAACTAGAACAAAAATCTTCAT 58.922 34.615 0.00 0.00 0.00 2.57
5630 5931 7.059945 GTCGCAACTAGAACAAAAATCTTCATG 59.940 37.037 0.00 0.00 0.00 3.07
5631 5932 6.183359 CGCAACTAGAACAAAAATCTTCATGC 60.183 38.462 0.00 0.00 0.00 4.06
5632 5933 6.642131 GCAACTAGAACAAAAATCTTCATGCA 59.358 34.615 0.00 0.00 32.37 3.96
5633 5934 7.330208 GCAACTAGAACAAAAATCTTCATGCAT 59.670 33.333 0.00 0.00 32.37 3.96
5634 5935 8.857216 CAACTAGAACAAAAATCTTCATGCATC 58.143 33.333 0.00 0.00 0.00 3.91
5635 5936 8.114331 ACTAGAACAAAAATCTTCATGCATCA 57.886 30.769 0.00 0.00 0.00 3.07
5636 5937 8.579006 ACTAGAACAAAAATCTTCATGCATCAA 58.421 29.630 0.00 0.00 0.00 2.57
5637 5938 9.414295 CTAGAACAAAAATCTTCATGCATCAAA 57.586 29.630 0.00 0.00 0.00 2.69
5638 5939 8.080083 AGAACAAAAATCTTCATGCATCAAAC 57.920 30.769 0.00 0.00 0.00 2.93
5639 5940 6.790285 ACAAAAATCTTCATGCATCAAACC 57.210 33.333 0.00 0.00 0.00 3.27
5640 5941 6.289834 ACAAAAATCTTCATGCATCAAACCA 58.710 32.000 0.00 0.00 0.00 3.67
5641 5942 6.766944 ACAAAAATCTTCATGCATCAAACCAA 59.233 30.769 0.00 0.00 0.00 3.67
5642 5943 7.041644 ACAAAAATCTTCATGCATCAAACCAAG 60.042 33.333 0.00 0.00 0.00 3.61
5643 5944 3.581024 TCTTCATGCATCAAACCAAGC 57.419 42.857 0.00 0.00 0.00 4.01
5644 5945 2.892215 TCTTCATGCATCAAACCAAGCA 59.108 40.909 0.00 0.00 41.73 3.91
5645 5946 3.057104 TCTTCATGCATCAAACCAAGCAG 60.057 43.478 0.00 0.00 40.71 4.24
5646 5947 1.067425 TCATGCATCAAACCAAGCAGC 60.067 47.619 0.00 0.00 40.71 5.25
5647 5948 0.248289 ATGCATCAAACCAAGCAGCC 59.752 50.000 0.00 0.00 40.71 4.85
5648 5949 0.828762 TGCATCAAACCAAGCAGCCT 60.829 50.000 0.00 0.00 32.48 4.58
5649 5950 0.108945 GCATCAAACCAAGCAGCCTC 60.109 55.000 0.00 0.00 0.00 4.70
5650 5951 1.250328 CATCAAACCAAGCAGCCTCA 58.750 50.000 0.00 0.00 0.00 3.86
5651 5952 1.822990 CATCAAACCAAGCAGCCTCAT 59.177 47.619 0.00 0.00 0.00 2.90
5652 5953 1.250328 TCAAACCAAGCAGCCTCATG 58.750 50.000 0.00 0.00 0.00 3.07
5653 5954 0.245539 CAAACCAAGCAGCCTCATGG 59.754 55.000 0.00 3.26 38.91 3.66
5654 5955 3.174313 ACCAAGCAGCCTCATGGT 58.826 55.556 4.38 4.38 41.25 3.55
5655 5956 0.698238 AACCAAGCAGCCTCATGGTA 59.302 50.000 9.49 0.00 45.15 3.25
5656 5957 0.035056 ACCAAGCAGCCTCATGGTAC 60.035 55.000 7.76 0.00 44.11 3.34
5657 5958 2.732172 ACCAAGCAGCCTCATGGTACA 61.732 52.381 7.76 0.00 44.11 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.167485 ACATGTGACGAAGGGGTAACTA 58.833 45.455 0.00 0.00 0.00 2.24
6 7 1.975680 ACATGTGACGAAGGGGTAACT 59.024 47.619 0.00 0.00 0.00 2.24
8 9 3.495434 AAACATGTGACGAAGGGGTAA 57.505 42.857 0.00 0.00 0.00 2.85
13 14 2.549754 AGCTGAAAACATGTGACGAAGG 59.450 45.455 0.00 0.00 0.00 3.46
15 16 5.334802 CCAATAGCTGAAAACATGTGACGAA 60.335 40.000 0.00 0.00 0.00 3.85
16 17 4.154015 CCAATAGCTGAAAACATGTGACGA 59.846 41.667 0.00 0.00 0.00 4.20
17 18 4.083324 ACCAATAGCTGAAAACATGTGACG 60.083 41.667 0.00 0.00 0.00 4.35
24 25 4.216257 GCAAGAGACCAATAGCTGAAAACA 59.784 41.667 0.00 0.00 0.00 2.83
37 38 3.128349 GTTGTTCGTAAGCAAGAGACCA 58.872 45.455 0.00 0.00 37.18 4.02
43 44 8.656849 AGAATACATAAGTTGTTCGTAAGCAAG 58.343 33.333 0.00 0.00 39.87 4.01
61 62 5.278957 GGTGTTGAAACCTGCAAGAATACAT 60.279 40.000 0.00 0.00 37.24 2.29
552 555 2.099431 CAGAACCTGCTGAGAGCGC 61.099 63.158 0.00 0.00 46.26 5.92
727 731 0.737219 GCTGAGTCATGCATTGTCCC 59.263 55.000 0.00 0.00 0.00 4.46
775 779 2.427506 AGACCGTTGGAAGAAATGCTC 58.572 47.619 0.00 0.00 0.00 4.26
1023 1028 8.270744 AGCTCATTATCATCTTACAAAAGAGGT 58.729 33.333 0.41 0.00 44.79 3.85
1161 1169 3.751518 ACATACCACTTCACCACTTTCC 58.248 45.455 0.00 0.00 0.00 3.13
1170 1178 2.899900 AGCAGAGTGACATACCACTTCA 59.100 45.455 0.00 0.00 46.45 3.02
1230 1239 6.347321 GCATAACAACATAAACAAAGGTTGCC 60.347 38.462 0.00 0.00 43.23 4.52
1236 1245 5.571357 GTCCGGCATAACAACATAAACAAAG 59.429 40.000 0.00 0.00 0.00 2.77
1237 1246 5.462405 GTCCGGCATAACAACATAAACAAA 58.538 37.500 0.00 0.00 0.00 2.83
1260 1269 2.877691 GCCCCAAGCTTGCTAACG 59.122 61.111 21.43 6.80 38.99 3.18
1313 1327 7.228706 AGTGTAACAATACAAACTGGAAAGGAG 59.771 37.037 0.00 0.00 43.41 3.69
1320 1334 7.672983 ATCAGAGTGTAACAATACAAACTGG 57.327 36.000 16.22 5.89 43.41 4.00
1346 1360 2.783828 ATCGGCTAGTCGTGAAGATG 57.216 50.000 17.56 0.00 0.00 2.90
1409 1423 5.074804 ACAGGCATGTGCATATATGTCAAT 58.925 37.500 14.14 3.03 44.36 2.57
1538 1552 3.512219 TGATGCAATATGGCTCCATGA 57.488 42.857 11.49 0.00 37.82 3.07
1771 1796 1.145945 TGCATTCCTAACAACCCCACA 59.854 47.619 0.00 0.00 0.00 4.17
1796 1821 4.505215 CCCTTGCTCTTCATCAGCTGATAT 60.505 45.833 28.27 6.43 37.79 1.63
1820 1845 6.239148 GGATTTCAGTCTCAGAAAAAGGCTTT 60.239 38.462 6.68 6.68 38.36 3.51
1832 1857 2.028112 CCAGTTCCGGATTTCAGTCTCA 60.028 50.000 4.15 0.00 0.00 3.27
1910 1935 2.640316 CCATACCAGGCTTAAGGTCC 57.360 55.000 4.29 0.00 39.31 4.46
1934 1959 2.348472 ACAATTCCAGAGTCCAGGGAA 58.652 47.619 10.04 10.04 44.22 3.97
1995 2020 7.015389 GGTATAGGCTCTAAAACACTAGACCAT 59.985 40.741 8.46 0.00 42.56 3.55
2008 2033 7.229308 TCTTCAAGTATCGGTATAGGCTCTAA 58.771 38.462 0.00 0.00 0.00 2.10
2009 2034 6.776744 TCTTCAAGTATCGGTATAGGCTCTA 58.223 40.000 0.00 0.00 0.00 2.43
2012 2037 5.834204 ACTTCTTCAAGTATCGGTATAGGCT 59.166 40.000 0.00 0.00 41.39 4.58
2013 2038 6.086785 ACTTCTTCAAGTATCGGTATAGGC 57.913 41.667 0.00 0.00 41.39 3.93
2061 2086 2.357637 CACACAACACGAGGGATGTTTT 59.642 45.455 0.00 0.00 38.22 2.43
2062 2087 1.946768 CACACAACACGAGGGATGTTT 59.053 47.619 0.00 0.00 38.22 2.83
2063 2088 1.134220 ACACACAACACGAGGGATGTT 60.134 47.619 0.00 0.00 40.95 2.71
2064 2089 0.468226 ACACACAACACGAGGGATGT 59.532 50.000 0.00 0.00 0.00 3.06
2088 2113 8.917415 AAGATGTTCTCAAACTGTTCTTTTTC 57.083 30.769 0.00 0.00 36.30 2.29
2247 2290 9.696917 GAAGATCAATAAAACCACTCAAATTGT 57.303 29.630 0.00 0.00 0.00 2.71
2271 2314 8.372877 TGGGAAGGCATAATCAATAAAAAGAA 57.627 30.769 0.00 0.00 0.00 2.52
2273 2316 7.172019 GCATGGGAAGGCATAATCAATAAAAAG 59.828 37.037 0.00 0.00 0.00 2.27
2296 2341 2.551459 GCACACTTTCTGTCAAGAGCAT 59.449 45.455 0.00 0.00 32.79 3.79
2334 2408 6.174720 TCAAGTGTCCCTATTATGCCTAAG 57.825 41.667 0.00 0.00 0.00 2.18
2423 2497 5.278071 CCAAACGGAACACAGTAGCATTTAA 60.278 40.000 0.00 0.00 0.00 1.52
2424 2498 4.214545 CCAAACGGAACACAGTAGCATTTA 59.785 41.667 0.00 0.00 0.00 1.40
2425 2499 3.004315 CCAAACGGAACACAGTAGCATTT 59.996 43.478 0.00 0.00 0.00 2.32
2451 2525 8.359875 TGCCAATAAATAAGGTCAATCTGAAA 57.640 30.769 0.00 0.00 0.00 2.69
2578 2652 4.946157 CCAAAATCAGCTACCTTGATGAGT 59.054 41.667 0.00 0.00 35.76 3.41
2693 2767 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
2694 2768 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
2695 2769 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
2696 2770 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
2697 2771 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
2698 2772 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
2699 2773 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
2700 2774 5.105756 GGTTGAGACACTTATTTTGGGATGG 60.106 44.000 0.00 0.00 0.00 3.51
2701 2775 5.711976 AGGTTGAGACACTTATTTTGGGATG 59.288 40.000 0.00 0.00 0.00 3.51
2702 2776 5.892348 AGGTTGAGACACTTATTTTGGGAT 58.108 37.500 0.00 0.00 0.00 3.85
2703 2777 5.319043 AGGTTGAGACACTTATTTTGGGA 57.681 39.130 0.00 0.00 0.00 4.37
2704 2778 6.715264 ACTAAGGTTGAGACACTTATTTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
2705 2779 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
2706 2780 9.268268 TGTACTAAGGTTGAGACACTTATTTTG 57.732 33.333 0.00 0.00 0.00 2.44
2707 2781 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
2711 2785 9.841295 AAAATTGTACTAAGGTTGAGACACTTA 57.159 29.630 0.00 0.00 0.00 2.24
2712 2786 8.621286 CAAAATTGTACTAAGGTTGAGACACTT 58.379 33.333 0.00 0.00 0.00 3.16
2713 2787 7.773690 ACAAAATTGTACTAAGGTTGAGACACT 59.226 33.333 0.00 0.00 40.16 3.55
2714 2788 7.927048 ACAAAATTGTACTAAGGTTGAGACAC 58.073 34.615 0.00 0.00 40.16 3.67
2743 2817 9.099454 CTCAACTCTCAACTTTGTACTAACTTT 57.901 33.333 0.00 0.00 0.00 2.66
2744 2818 8.475639 TCTCAACTCTCAACTTTGTACTAACTT 58.524 33.333 0.00 0.00 0.00 2.66
2745 2819 7.921745 GTCTCAACTCTCAACTTTGTACTAACT 59.078 37.037 0.00 0.00 0.00 2.24
2746 2820 7.705325 TGTCTCAACTCTCAACTTTGTACTAAC 59.295 37.037 0.00 0.00 0.00 2.34
2747 2821 7.705325 GTGTCTCAACTCTCAACTTTGTACTAA 59.295 37.037 0.00 0.00 0.00 2.24
2748 2822 7.068348 AGTGTCTCAACTCTCAACTTTGTACTA 59.932 37.037 0.00 0.00 0.00 1.82
2749 2823 6.043411 GTGTCTCAACTCTCAACTTTGTACT 58.957 40.000 0.00 0.00 0.00 2.73
2750 2824 6.043411 AGTGTCTCAACTCTCAACTTTGTAC 58.957 40.000 0.00 0.00 0.00 2.90
2751 2825 6.222038 AGTGTCTCAACTCTCAACTTTGTA 57.778 37.500 0.00 0.00 0.00 2.41
2752 2826 5.091261 AGTGTCTCAACTCTCAACTTTGT 57.909 39.130 0.00 0.00 0.00 2.83
2753 2827 7.721286 ATAAGTGTCTCAACTCTCAACTTTG 57.279 36.000 0.00 0.00 0.00 2.77
2754 2828 8.738645 AAATAAGTGTCTCAACTCTCAACTTT 57.261 30.769 0.00 0.00 0.00 2.66
2755 2829 8.616076 CAAAATAAGTGTCTCAACTCTCAACTT 58.384 33.333 0.00 0.00 0.00 2.66
2756 2830 7.227512 CCAAAATAAGTGTCTCAACTCTCAACT 59.772 37.037 0.00 0.00 0.00 3.16
2757 2831 7.355778 CCAAAATAAGTGTCTCAACTCTCAAC 58.644 38.462 0.00 0.00 0.00 3.18
2758 2832 6.486657 CCCAAAATAAGTGTCTCAACTCTCAA 59.513 38.462 0.00 0.00 0.00 3.02
2759 2833 5.997746 CCCAAAATAAGTGTCTCAACTCTCA 59.002 40.000 0.00 0.00 0.00 3.27
2760 2834 6.147985 GTCCCAAAATAAGTGTCTCAACTCTC 59.852 42.308 0.00 0.00 0.00 3.20
2761 2835 5.998363 GTCCCAAAATAAGTGTCTCAACTCT 59.002 40.000 0.00 0.00 0.00 3.24
2762 2836 5.107065 CGTCCCAAAATAAGTGTCTCAACTC 60.107 44.000 0.00 0.00 0.00 3.01
2763 2837 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2764 2838 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2765 2839 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2766 2840 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2767 2841 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2768 2842 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2769 2843 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2770 2844 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2771 2845 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2772 2846 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
2773 2847 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
2774 2848 4.475747 ACTATTCCCTCCGTCCCAAAATAA 59.524 41.667 0.00 0.00 0.00 1.40
2775 2849 4.042174 ACTATTCCCTCCGTCCCAAAATA 58.958 43.478 0.00 0.00 0.00 1.40
2776 2850 2.850568 ACTATTCCCTCCGTCCCAAAAT 59.149 45.455 0.00 0.00 0.00 1.82
2777 2851 2.271777 ACTATTCCCTCCGTCCCAAAA 58.728 47.619 0.00 0.00 0.00 2.44
2778 2852 1.961133 ACTATTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2779 2853 2.292389 TGTACTATTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
2780 2854 1.288633 TGTACTATTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
2781 2855 2.077687 TGTACTATTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
2782 2856 4.022503 GTGTATGTACTATTCCCTCCGTCC 60.023 50.000 0.00 0.00 0.00 4.79
2783 2857 4.581824 TGTGTATGTACTATTCCCTCCGTC 59.418 45.833 0.00 0.00 0.00 4.79
2784 2858 4.539726 TGTGTATGTACTATTCCCTCCGT 58.460 43.478 0.00 0.00 0.00 4.69
2785 2859 4.558898 GCTGTGTATGTACTATTCCCTCCG 60.559 50.000 0.00 0.00 0.00 4.63
2786 2860 4.344102 TGCTGTGTATGTACTATTCCCTCC 59.656 45.833 0.00 0.00 0.00 4.30
2787 2861 5.069251 AGTGCTGTGTATGTACTATTCCCTC 59.931 44.000 0.00 0.00 0.00 4.30
2788 2862 4.962995 AGTGCTGTGTATGTACTATTCCCT 59.037 41.667 0.00 0.00 0.00 4.20
2789 2863 5.277857 AGTGCTGTGTATGTACTATTCCC 57.722 43.478 0.00 0.00 0.00 3.97
2790 2864 7.042658 GCTTTAGTGCTGTGTATGTACTATTCC 60.043 40.741 0.00 0.00 33.84 3.01
2791 2865 7.491372 TGCTTTAGTGCTGTGTATGTACTATTC 59.509 37.037 0.00 0.00 33.84 1.75
2792 2866 7.327975 TGCTTTAGTGCTGTGTATGTACTATT 58.672 34.615 0.00 0.00 33.84 1.73
2793 2867 6.873997 TGCTTTAGTGCTGTGTATGTACTAT 58.126 36.000 0.00 0.00 33.84 2.12
2794 2868 6.275494 TGCTTTAGTGCTGTGTATGTACTA 57.725 37.500 0.00 0.00 32.86 1.82
3144 3218 4.216472 GCTAATATTTAGCTCCCAGCAACC 59.784 45.833 11.12 0.00 45.56 3.77
3283 3361 6.870971 TTACTTGGAAGAACATACCACAAC 57.129 37.500 0.00 0.00 33.20 3.32
3318 3396 8.503196 CAAAGAATAAAGTTACAAAAATGCCCC 58.497 33.333 0.00 0.00 0.00 5.80
3466 3544 7.125792 TGGAGAGTAAGGGTATCAAAAGATC 57.874 40.000 0.00 0.00 0.00 2.75
3481 3559 9.137459 CCTAATAATCTCAGAACTGGAGAGTAA 57.863 37.037 4.06 0.00 42.86 2.24
3483 3561 7.358263 TCCTAATAATCTCAGAACTGGAGAGT 58.642 38.462 1.93 0.00 44.04 3.24
3484 3562 7.523709 GCTCCTAATAATCTCAGAACTGGAGAG 60.524 44.444 0.00 0.00 44.04 3.20
3485 3563 6.266558 GCTCCTAATAATCTCAGAACTGGAGA 59.733 42.308 0.00 0.00 44.83 3.71
3622 3706 3.431486 GGGAAGACTGGAACTGCTGATAG 60.431 52.174 0.00 0.00 0.00 2.08
3634 3718 4.286291 ACCACTACTTTTAGGGAAGACTGG 59.714 45.833 0.00 0.00 28.79 4.00
3636 3720 5.152934 TCACCACTACTTTTAGGGAAGACT 58.847 41.667 0.00 0.00 28.79 3.24
3641 3725 4.903049 TCACTTCACCACTACTTTTAGGGA 59.097 41.667 0.00 0.00 28.79 4.20
3642 3726 5.223449 TCACTTCACCACTACTTTTAGGG 57.777 43.478 0.00 0.00 0.00 3.53
3646 3730 6.299141 ACATGATCACTTCACCACTACTTTT 58.701 36.000 0.00 0.00 37.11 2.27
3657 3741 9.623000 ATCATTTATCTGAACATGATCACTTCA 57.377 29.630 14.19 14.19 39.12 3.02
3685 3769 4.797275 GCAGCAAATGTAAAAGTTGAGGCT 60.797 41.667 0.00 0.00 35.88 4.58
3698 3782 0.754472 AAAGCCACTGCAGCAAATGT 59.246 45.000 15.27 0.00 41.13 2.71
3706 3790 1.529152 CCATGAGCAAAGCCACTGCA 61.529 55.000 0.00 0.00 42.48 4.41
3707 3791 1.214589 CCATGAGCAAAGCCACTGC 59.785 57.895 0.00 0.00 40.24 4.40
3731 3815 2.195123 CTGCGGTTGGCCTTTTACGG 62.195 60.000 3.32 2.87 42.61 4.02
3803 3887 5.578005 ATGCATAATCTAATCTGGCATGC 57.422 39.130 9.90 9.90 38.89 4.06
3807 3891 7.544566 CCAAATCAATGCATAATCTAATCTGGC 59.455 37.037 0.00 0.00 0.00 4.85
3811 3895 9.121517 CGAACCAAATCAATGCATAATCTAATC 57.878 33.333 0.00 0.00 0.00 1.75
3819 3903 5.398169 GTTCACGAACCAAATCAATGCATA 58.602 37.500 0.00 0.00 35.36 3.14
3840 3924 6.016276 GTGACATAAACAATTCTGGTCAGGTT 60.016 38.462 0.00 0.00 0.00 3.50
3850 3934 4.563976 GCATGGCTGTGACATAAACAATTC 59.436 41.667 0.00 0.00 25.85 2.17
3942 4026 5.306532 ACAGATGTGCATGTGAGAAAATC 57.693 39.130 14.88 0.00 35.83 2.17
3944 4028 5.939296 TGATACAGATGTGCATGTGAGAAAA 59.061 36.000 14.88 0.00 35.83 2.29
3946 4030 5.088680 TGATACAGATGTGCATGTGAGAA 57.911 39.130 14.88 2.41 35.83 2.87
3948 4032 6.373186 AAATGATACAGATGTGCATGTGAG 57.627 37.500 14.88 0.00 35.83 3.51
3949 4033 6.374894 TGAAAATGATACAGATGTGCATGTGA 59.625 34.615 14.88 1.37 35.83 3.58
3950 4034 6.557110 TGAAAATGATACAGATGTGCATGTG 58.443 36.000 7.63 7.63 37.99 3.21
3951 4035 6.762702 TGAAAATGATACAGATGTGCATGT 57.237 33.333 0.00 0.00 0.00 3.21
3952 4036 9.394477 CTAATGAAAATGATACAGATGTGCATG 57.606 33.333 0.00 0.00 0.00 4.06
3953 4037 9.346005 TCTAATGAAAATGATACAGATGTGCAT 57.654 29.630 0.00 0.00 0.00 3.96
3954 4038 8.735692 TCTAATGAAAATGATACAGATGTGCA 57.264 30.769 0.00 0.00 0.00 4.57
3975 4063 8.801299 TGAATTGCTTCAACAATGGTATTCTAA 58.199 29.630 0.00 0.00 40.12 2.10
4028 4116 0.761802 CTTCTGGTCCATAGCCCCTC 59.238 60.000 0.00 0.00 0.00 4.30
4032 4120 2.158696 AGCATTCTTCTGGTCCATAGCC 60.159 50.000 0.00 0.00 0.00 3.93
4165 4253 3.276857 CTGGTTTCACCTGATGATCCAG 58.723 50.000 8.64 8.64 45.16 3.86
4237 4325 1.079819 CTGGTGCTGGTGGTAGTCG 60.080 63.158 0.00 0.00 0.00 4.18
4262 4350 7.332678 GGAACTAACAATAATACTCACCGTTGT 59.667 37.037 0.00 0.00 0.00 3.32
4283 4371 4.081087 ACGGCACTACATGATTTAGGAACT 60.081 41.667 0.00 0.00 46.37 3.01
4303 4398 2.469516 GGCGCCATTCCAAGTACGG 61.470 63.158 24.80 0.00 0.00 4.02
4304 4399 1.429148 GAGGCGCCATTCCAAGTACG 61.429 60.000 31.54 0.00 0.00 3.67
4321 4416 2.286772 CGGGACTTCAAACAAAACGGAG 60.287 50.000 0.00 0.00 0.00 4.63
4333 4429 1.582610 GCGCAAAATCCGGGACTTCA 61.583 55.000 0.30 0.00 0.00 3.02
4334 4430 1.136774 GCGCAAAATCCGGGACTTC 59.863 57.895 0.30 0.00 0.00 3.01
4340 4436 0.804544 TAGAGACGCGCAAAATCCGG 60.805 55.000 5.73 0.00 0.00 5.14
4353 4449 4.572389 ACGGAAATCATGTGCATTAGAGAC 59.428 41.667 0.00 0.00 0.00 3.36
4365 4461 1.135315 CCCTGCACAACGGAAATCATG 60.135 52.381 0.00 0.00 0.00 3.07
4368 4464 1.068541 GTTCCCTGCACAACGGAAATC 60.069 52.381 2.28 0.00 37.41 2.17
4375 4471 1.809684 GAGGTAGTTCCCTGCACAAC 58.190 55.000 0.00 0.00 34.03 3.32
4400 4502 1.524482 GCGAGGGATCTGCTCCTTT 59.476 57.895 0.00 0.00 44.28 3.11
4494 4599 0.756294 TCAGCAAACCTGTCCGAAGA 59.244 50.000 0.00 0.00 42.38 2.87
4529 4634 3.612247 CTCCGGTTGGTGGGCTCTG 62.612 68.421 0.00 0.00 36.30 3.35
4697 4802 2.513204 CAGATGGACGGCAGGCAG 60.513 66.667 0.00 0.00 0.00 4.85
4698 4803 4.783621 GCAGATGGACGGCAGGCA 62.784 66.667 0.00 0.00 39.38 4.75
4700 4805 4.864334 GGGCAGATGGACGGCAGG 62.864 72.222 0.00 0.00 41.24 4.85
4701 4806 4.864334 GGGGCAGATGGACGGCAG 62.864 72.222 0.00 0.00 41.24 4.85
4704 4809 3.406595 GAAGGGGGCAGATGGACGG 62.407 68.421 0.00 0.00 0.00 4.79
4705 4810 2.190578 GAAGGGGGCAGATGGACG 59.809 66.667 0.00 0.00 0.00 4.79
4706 4811 2.190578 CGAAGGGGGCAGATGGAC 59.809 66.667 0.00 0.00 0.00 4.02
4707 4812 3.797353 GCGAAGGGGGCAGATGGA 61.797 66.667 0.00 0.00 0.00 3.41
4708 4813 3.426309 ATGCGAAGGGGGCAGATGG 62.426 63.158 0.00 0.00 44.71 3.51
4709 4814 1.895707 GATGCGAAGGGGGCAGATG 60.896 63.158 0.00 0.00 44.71 2.90
4710 4815 1.713005 ATGATGCGAAGGGGGCAGAT 61.713 55.000 0.00 0.00 44.71 2.90
4711 4816 2.329539 GATGATGCGAAGGGGGCAGA 62.330 60.000 0.00 0.00 44.71 4.26
4712 4817 1.895707 GATGATGCGAAGGGGGCAG 60.896 63.158 0.00 0.00 44.71 4.85
4713 4818 2.192979 GATGATGCGAAGGGGGCA 59.807 61.111 0.00 0.00 45.71 5.36
4714 4819 2.974698 CGATGATGCGAAGGGGGC 60.975 66.667 0.00 0.00 0.00 5.80
4715 4820 1.595382 GTCGATGATGCGAAGGGGG 60.595 63.158 0.00 0.00 42.55 5.40
4722 4827 3.630148 GGTGGCGTCGATGATGCG 61.630 66.667 9.31 0.00 44.61 4.73
4747 4852 2.014128 GATTATTGTGGTCGGTGGTGG 58.986 52.381 0.00 0.00 0.00 4.61
4748 4853 2.014128 GGATTATTGTGGTCGGTGGTG 58.986 52.381 0.00 0.00 0.00 4.17
4749 4854 1.631388 TGGATTATTGTGGTCGGTGGT 59.369 47.619 0.00 0.00 0.00 4.16
4750 4855 2.288666 CTGGATTATTGTGGTCGGTGG 58.711 52.381 0.00 0.00 0.00 4.61
4751 4856 1.670811 GCTGGATTATTGTGGTCGGTG 59.329 52.381 0.00 0.00 0.00 4.94
4752 4857 1.742411 CGCTGGATTATTGTGGTCGGT 60.742 52.381 0.00 0.00 0.00 4.69
4794 4899 0.550914 AGGGAGACACAAACTTGGCA 59.449 50.000 0.00 0.00 0.00 4.92
4819 4927 7.566868 GCTTTTATTTTCATCACAACACGGAAC 60.567 37.037 0.00 0.00 0.00 3.62
4820 4928 6.419413 GCTTTTATTTTCATCACAACACGGAA 59.581 34.615 0.00 0.00 0.00 4.30
4822 4930 5.118510 GGCTTTTATTTTCATCACAACACGG 59.881 40.000 0.00 0.00 0.00 4.94
4874 4994 4.779733 TCACTCTCCCCGCCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
4875 4995 4.332543 TTCACTCTCCCCGCCCCT 62.333 66.667 0.00 0.00 0.00 4.79
4876 4996 3.787001 CTTCACTCTCCCCGCCCC 61.787 72.222 0.00 0.00 0.00 5.80
4877 4997 2.683933 TCTTCACTCTCCCCGCCC 60.684 66.667 0.00 0.00 0.00 6.13
4902 5022 0.387565 GAAAGCCCAAAGGAAACGCA 59.612 50.000 0.00 0.00 33.47 5.24
4926 5046 2.004583 TCATCATCCACGTTTCCGAC 57.995 50.000 0.00 0.00 37.88 4.79
4928 5048 3.453424 TGTATCATCATCCACGTTTCCG 58.547 45.455 0.00 0.00 40.83 4.30
4929 5049 4.319766 GCATGTATCATCATCCACGTTTCC 60.320 45.833 0.00 0.00 0.00 3.13
4947 5067 3.125316 GCACACAAATCACAAAGCATGT 58.875 40.909 0.00 0.00 45.34 3.21
4948 5068 3.124560 TGCACACAAATCACAAAGCATG 58.875 40.909 0.00 0.00 0.00 4.06
4969 5091 0.385473 CGCGAGCAATCGTTGGTTTT 60.385 50.000 0.00 0.00 42.23 2.43
4970 5092 1.206578 CGCGAGCAATCGTTGGTTT 59.793 52.632 0.00 0.00 42.23 3.27
4981 5107 0.665068 ACGTCACATAAACGCGAGCA 60.665 50.000 15.93 0.00 43.76 4.26
4985 5111 1.576152 CACAACGTCACATAAACGCG 58.424 50.000 3.53 3.53 43.76 6.01
4989 5115 6.680874 AGTTTAACCACAACGTCACATAAA 57.319 33.333 0.00 0.00 0.00 1.40
5019 5166 5.100259 CGAGCAAGCAAAGAAATCATCAAT 58.900 37.500 0.00 0.00 0.00 2.57
5025 5172 2.336554 TGCGAGCAAGCAAAGAAATC 57.663 45.000 3.56 0.00 45.06 2.17
5045 5217 1.555075 ACATGTCTAACCATGCGAGGT 59.445 47.619 0.00 0.00 44.88 3.85
5046 5218 2.205074 GACATGTCTAACCATGCGAGG 58.795 52.381 18.83 0.00 44.88 4.63
5047 5219 2.205074 GGACATGTCTAACCATGCGAG 58.795 52.381 24.50 0.00 44.88 5.03
5049 5221 1.935873 CTGGACATGTCTAACCATGCG 59.064 52.381 24.50 2.03 44.88 4.73
5050 5222 1.672881 GCTGGACATGTCTAACCATGC 59.327 52.381 24.50 14.21 44.88 4.06
5051 5223 2.989909 TGCTGGACATGTCTAACCATG 58.010 47.619 24.50 8.28 46.14 3.66
5052 5224 3.457380 AGATGCTGGACATGTCTAACCAT 59.543 43.478 24.50 21.12 39.84 3.55
5053 5225 2.840038 AGATGCTGGACATGTCTAACCA 59.160 45.455 24.50 17.77 39.84 3.67
5054 5226 3.201290 CAGATGCTGGACATGTCTAACC 58.799 50.000 24.50 13.05 39.84 2.85
5055 5227 2.611292 GCAGATGCTGGACATGTCTAAC 59.389 50.000 24.50 15.17 39.84 2.34
5056 5228 2.420547 GGCAGATGCTGGACATGTCTAA 60.421 50.000 24.50 12.81 39.84 2.10
5060 5232 0.393944 CAGGCAGATGCTGGACATGT 60.394 55.000 0.00 0.00 39.84 3.21
5068 5240 1.298993 CACCACTCAGGCAGATGCT 59.701 57.895 4.59 0.00 43.14 3.79
5077 5249 0.599204 AACCGCGTAACACCACTCAG 60.599 55.000 4.92 0.00 0.00 3.35
5081 5253 2.248835 AGCAACCGCGTAACACCAC 61.249 57.895 4.92 0.00 45.49 4.16
5107 5291 7.692291 CACATGATGAGTAAACAAAATACGGAC 59.308 37.037 0.00 0.00 0.00 4.79
5118 5302 8.204836 AGAGTAATACCCACATGATGAGTAAAC 58.795 37.037 0.00 2.16 0.00 2.01
5126 5310 6.070538 GGCAGATAGAGTAATACCCACATGAT 60.071 42.308 0.00 0.00 0.00 2.45
5127 5311 5.246203 GGCAGATAGAGTAATACCCACATGA 59.754 44.000 0.00 0.00 0.00 3.07
5128 5312 5.012046 TGGCAGATAGAGTAATACCCACATG 59.988 44.000 0.00 0.00 0.00 3.21
5129 5313 5.155161 TGGCAGATAGAGTAATACCCACAT 58.845 41.667 0.00 0.00 0.00 3.21
5147 5331 3.117171 GCAGCGTCTGTCTGGCAG 61.117 66.667 8.58 8.58 46.34 4.85
5149 5333 4.724602 TCGCAGCGTCTGTCTGGC 62.725 66.667 15.93 0.00 33.43 4.85
5150 5334 2.505777 CTCGCAGCGTCTGTCTGG 60.506 66.667 15.93 0.00 33.43 3.86
5175 5367 2.260844 AATACGCCATCCATGACAGG 57.739 50.000 0.00 0.00 0.00 4.00
5176 5368 5.947228 AAATAATACGCCATCCATGACAG 57.053 39.130 0.00 0.00 0.00 3.51
5177 5369 6.238897 GGAAAAATAATACGCCATCCATGACA 60.239 38.462 0.00 0.00 0.00 3.58
5179 5371 5.830457 TGGAAAAATAATACGCCATCCATGA 59.170 36.000 0.00 0.00 31.12 3.07
5180 5372 6.083098 TGGAAAAATAATACGCCATCCATG 57.917 37.500 0.00 0.00 31.12 3.66
5181 5373 5.833131 ACTGGAAAAATAATACGCCATCCAT 59.167 36.000 0.00 0.00 35.35 3.41
5182 5374 5.197451 ACTGGAAAAATAATACGCCATCCA 58.803 37.500 0.00 0.00 34.71 3.41
5183 5375 5.767816 ACTGGAAAAATAATACGCCATCC 57.232 39.130 0.00 0.00 0.00 3.51
5185 5377 5.348164 GCAACTGGAAAAATAATACGCCAT 58.652 37.500 0.00 0.00 0.00 4.40
5186 5378 4.673061 CGCAACTGGAAAAATAATACGCCA 60.673 41.667 0.00 0.00 0.00 5.69
5187 5379 3.789224 CGCAACTGGAAAAATAATACGCC 59.211 43.478 0.00 0.00 0.00 5.68
5189 5381 5.864986 ACTCGCAACTGGAAAAATAATACG 58.135 37.500 0.00 0.00 0.00 3.06
5190 5382 7.184779 GGTACTCGCAACTGGAAAAATAATAC 58.815 38.462 0.00 0.00 0.00 1.89
5191 5383 6.036300 CGGTACTCGCAACTGGAAAAATAATA 59.964 38.462 0.00 0.00 0.00 0.98
5195 5392 2.482721 CGGTACTCGCAACTGGAAAAAT 59.517 45.455 0.00 0.00 0.00 1.82
5201 5398 1.800315 CGTCGGTACTCGCAACTGG 60.800 63.158 0.00 0.00 39.05 4.00
5317 5546 1.378119 CGGTCCCAAAAGGCCTACC 60.378 63.158 5.16 8.07 34.51 3.18
5356 5607 4.686122 CGGCCAAAGGATAGATGTAGGTTT 60.686 45.833 2.24 0.00 0.00 3.27
5358 5621 2.368875 CGGCCAAAGGATAGATGTAGGT 59.631 50.000 2.24 0.00 0.00 3.08
5362 5625 0.839946 AGCGGCCAAAGGATAGATGT 59.160 50.000 2.24 0.00 0.00 3.06
5367 5630 2.203015 GCGAGCGGCCAAAGGATA 60.203 61.111 2.24 0.00 34.80 2.59
5382 5645 1.721664 CCATCTGGTGAATGCAGGCG 61.722 60.000 0.00 0.00 0.00 5.52
5384 5647 1.389609 GGCCATCTGGTGAATGCAGG 61.390 60.000 0.00 0.00 37.57 4.85
5385 5648 0.395311 AGGCCATCTGGTGAATGCAG 60.395 55.000 5.01 0.00 37.57 4.41
5386 5649 0.681887 CAGGCCATCTGGTGAATGCA 60.682 55.000 5.01 0.00 39.76 3.96
5393 5660 0.682209 GTGAATGCAGGCCATCTGGT 60.682 55.000 5.01 0.00 43.54 4.00
5424 5691 1.134580 AGAAGATGCACGTGATGAGGG 60.135 52.381 22.23 0.00 0.00 4.30
5425 5692 2.306341 AGAAGATGCACGTGATGAGG 57.694 50.000 22.23 0.00 0.00 3.86
5482 5783 1.472480 GAGCATGGTGCCGTAAACAAT 59.528 47.619 0.00 0.00 46.52 2.71
5488 5789 2.267642 GTGGAGCATGGTGCCGTA 59.732 61.111 14.15 0.00 46.52 4.02
5504 5805 2.252072 AATGGGCCATCACGTAGCGT 62.252 55.000 21.48 0.00 42.36 5.07
5505 5806 1.095228 AAATGGGCCATCACGTAGCG 61.095 55.000 21.48 0.00 0.00 4.26
5506 5807 1.102978 AAAATGGGCCATCACGTAGC 58.897 50.000 21.48 0.00 0.00 3.58
5507 5808 3.016736 AGAAAAATGGGCCATCACGTAG 58.983 45.455 21.48 0.00 0.00 3.51
5508 5809 3.080300 AGAAAAATGGGCCATCACGTA 57.920 42.857 21.48 0.00 0.00 3.57
5509 5810 1.923356 AGAAAAATGGGCCATCACGT 58.077 45.000 21.48 5.53 0.00 4.49
5510 5811 3.056607 AGAAAGAAAAATGGGCCATCACG 60.057 43.478 21.48 0.00 0.00 4.35
5511 5812 4.541973 AGAAAGAAAAATGGGCCATCAC 57.458 40.909 21.48 11.30 0.00 3.06
5512 5813 5.565455 AAAGAAAGAAAAATGGGCCATCA 57.435 34.783 21.48 0.00 0.00 3.07
5513 5814 5.412594 GGAAAAGAAAGAAAAATGGGCCATC 59.587 40.000 21.48 8.28 0.00 3.51
5514 5815 5.163109 TGGAAAAGAAAGAAAAATGGGCCAT 60.163 36.000 14.78 14.78 0.00 4.40
5515 5816 4.164988 TGGAAAAGAAAGAAAAATGGGCCA 59.835 37.500 9.61 9.61 0.00 5.36
5516 5817 4.713553 TGGAAAAGAAAGAAAAATGGGCC 58.286 39.130 0.00 0.00 0.00 5.80
5517 5818 4.214119 GCTGGAAAAGAAAGAAAAATGGGC 59.786 41.667 0.00 0.00 0.00 5.36
5518 5819 5.614308 AGCTGGAAAAGAAAGAAAAATGGG 58.386 37.500 0.00 0.00 0.00 4.00
5519 5820 7.280652 TGAAAGCTGGAAAAGAAAGAAAAATGG 59.719 33.333 0.00 0.00 0.00 3.16
5520 5821 8.200364 TGAAAGCTGGAAAAGAAAGAAAAATG 57.800 30.769 0.00 0.00 0.00 2.32
5521 5822 8.668353 GTTGAAAGCTGGAAAAGAAAGAAAAAT 58.332 29.630 0.00 0.00 0.00 1.82
5522 5823 7.877612 AGTTGAAAGCTGGAAAAGAAAGAAAAA 59.122 29.630 0.00 0.00 0.00 1.94
5523 5824 7.386059 AGTTGAAAGCTGGAAAAGAAAGAAAA 58.614 30.769 0.00 0.00 0.00 2.29
5524 5825 6.935167 AGTTGAAAGCTGGAAAAGAAAGAAA 58.065 32.000 0.00 0.00 0.00 2.52
5525 5826 6.152661 TGAGTTGAAAGCTGGAAAAGAAAGAA 59.847 34.615 0.00 0.00 0.00 2.52
5526 5827 5.652014 TGAGTTGAAAGCTGGAAAAGAAAGA 59.348 36.000 0.00 0.00 0.00 2.52
5527 5828 5.894807 TGAGTTGAAAGCTGGAAAAGAAAG 58.105 37.500 0.00 0.00 0.00 2.62
5528 5829 5.913137 TGAGTTGAAAGCTGGAAAAGAAA 57.087 34.783 0.00 0.00 0.00 2.52
5529 5830 5.913137 TTGAGTTGAAAGCTGGAAAAGAA 57.087 34.783 0.00 0.00 0.00 2.52
5530 5831 6.998074 TCTATTGAGTTGAAAGCTGGAAAAGA 59.002 34.615 0.00 0.00 0.00 2.52
5531 5832 7.206981 TCTATTGAGTTGAAAGCTGGAAAAG 57.793 36.000 0.00 0.00 0.00 2.27
5532 5833 6.207417 CCTCTATTGAGTTGAAAGCTGGAAAA 59.793 38.462 3.47 0.00 38.61 2.29
5533 5834 5.707298 CCTCTATTGAGTTGAAAGCTGGAAA 59.293 40.000 3.47 0.00 38.61 3.13
5534 5835 5.221925 ACCTCTATTGAGTTGAAAGCTGGAA 60.222 40.000 3.47 0.00 38.61 3.53
5535 5836 4.287067 ACCTCTATTGAGTTGAAAGCTGGA 59.713 41.667 3.47 0.00 38.61 3.86
5536 5837 4.583871 ACCTCTATTGAGTTGAAAGCTGG 58.416 43.478 3.47 0.00 38.61 4.85
5537 5838 6.376978 CAAACCTCTATTGAGTTGAAAGCTG 58.623 40.000 3.47 0.00 38.61 4.24
5538 5839 5.474876 CCAAACCTCTATTGAGTTGAAAGCT 59.525 40.000 8.44 0.00 38.61 3.74
5539 5840 5.703876 CCAAACCTCTATTGAGTTGAAAGC 58.296 41.667 8.44 0.00 38.61 3.51
5540 5841 5.241506 TGCCAAACCTCTATTGAGTTGAAAG 59.758 40.000 8.44 0.00 38.61 2.62
5541 5842 5.136828 TGCCAAACCTCTATTGAGTTGAAA 58.863 37.500 8.44 0.00 38.61 2.69
5542 5843 4.724399 TGCCAAACCTCTATTGAGTTGAA 58.276 39.130 8.44 0.00 38.61 2.69
5543 5844 4.365514 TGCCAAACCTCTATTGAGTTGA 57.634 40.909 8.44 0.00 38.61 3.18
5544 5845 5.649782 AATGCCAAACCTCTATTGAGTTG 57.350 39.130 3.47 2.64 38.61 3.16
5545 5846 6.267471 TGAAAATGCCAAACCTCTATTGAGTT 59.733 34.615 3.47 0.00 38.61 3.01
5546 5847 5.774690 TGAAAATGCCAAACCTCTATTGAGT 59.225 36.000 3.47 0.00 38.61 3.41
5547 5848 6.271488 TGAAAATGCCAAACCTCTATTGAG 57.729 37.500 0.00 0.00 39.92 3.02
5548 5849 6.351202 CCATGAAAATGCCAAACCTCTATTGA 60.351 38.462 0.00 0.00 0.00 2.57
5549 5850 5.813672 CCATGAAAATGCCAAACCTCTATTG 59.186 40.000 0.00 0.00 0.00 1.90
5550 5851 5.484998 ACCATGAAAATGCCAAACCTCTATT 59.515 36.000 0.00 0.00 0.00 1.73
5551 5852 5.025453 ACCATGAAAATGCCAAACCTCTAT 58.975 37.500 0.00 0.00 0.00 1.98
5552 5853 4.415596 ACCATGAAAATGCCAAACCTCTA 58.584 39.130 0.00 0.00 0.00 2.43
5553 5854 3.242011 ACCATGAAAATGCCAAACCTCT 58.758 40.909 0.00 0.00 0.00 3.69
5554 5855 3.683365 ACCATGAAAATGCCAAACCTC 57.317 42.857 0.00 0.00 0.00 3.85
5555 5856 4.136051 CAAACCATGAAAATGCCAAACCT 58.864 39.130 0.00 0.00 0.00 3.50
5556 5857 3.304592 GCAAACCATGAAAATGCCAAACC 60.305 43.478 0.00 0.00 0.00 3.27
5557 5858 3.887741 GCAAACCATGAAAATGCCAAAC 58.112 40.909 0.00 0.00 0.00 2.93
5562 5863 0.443478 GCGGCAAACCATGAAAATGC 59.557 50.000 0.00 0.00 34.57 3.56
5563 5864 2.083167 AGCGGCAAACCATGAAAATG 57.917 45.000 1.45 0.00 34.57 2.32
5564 5865 2.837532 AAGCGGCAAACCATGAAAAT 57.162 40.000 1.45 0.00 34.57 1.82
5565 5866 2.611225 AAAGCGGCAAACCATGAAAA 57.389 40.000 1.45 0.00 34.57 2.29
5566 5867 2.288518 GGTAAAGCGGCAAACCATGAAA 60.289 45.455 1.45 0.00 34.57 2.69
5567 5868 1.271102 GGTAAAGCGGCAAACCATGAA 59.729 47.619 1.45 0.00 34.57 2.57
5568 5869 0.885196 GGTAAAGCGGCAAACCATGA 59.115 50.000 1.45 0.00 34.57 3.07
5569 5870 0.600557 TGGTAAAGCGGCAAACCATG 59.399 50.000 14.62 0.00 37.09 3.66
5570 5871 0.601057 GTGGTAAAGCGGCAAACCAT 59.399 50.000 19.50 0.00 43.53 3.55
5571 5872 0.752009 TGTGGTAAAGCGGCAAACCA 60.752 50.000 14.62 14.62 39.66 3.67
5572 5873 0.601057 ATGTGGTAAAGCGGCAAACC 59.399 50.000 1.45 7.10 0.00 3.27
5573 5874 1.668628 CCATGTGGTAAAGCGGCAAAC 60.669 52.381 1.45 0.00 0.00 2.93
5574 5875 0.600557 CCATGTGGTAAAGCGGCAAA 59.399 50.000 1.45 0.00 0.00 3.68
5575 5876 2.262183 CCATGTGGTAAAGCGGCAA 58.738 52.632 1.45 0.00 0.00 4.52
5576 5877 3.995074 CCATGTGGTAAAGCGGCA 58.005 55.556 1.45 0.00 0.00 5.69
5580 5881 7.803629 CCGTAAACGAACCATGTGGTAAAGC 62.804 48.000 4.90 0.00 44.35 3.51
5581 5882 4.377635 CCGTAAACGAACCATGTGGTAAAG 60.378 45.833 4.90 2.89 44.35 1.85
5582 5883 3.497640 CCGTAAACGAACCATGTGGTAAA 59.502 43.478 4.90 0.00 44.35 2.01
5583 5884 3.065655 CCGTAAACGAACCATGTGGTAA 58.934 45.455 4.90 0.00 44.35 2.85
5584 5885 2.036992 ACCGTAAACGAACCATGTGGTA 59.963 45.455 4.90 0.00 44.35 3.25
5585 5886 1.202675 ACCGTAAACGAACCATGTGGT 60.203 47.619 3.65 0.00 43.07 4.16
5586 5887 1.461897 GACCGTAAACGAACCATGTGG 59.538 52.381 3.65 0.00 43.02 4.17
5587 5888 1.125384 CGACCGTAAACGAACCATGTG 59.875 52.381 3.65 0.00 43.02 3.21
5588 5889 1.421382 CGACCGTAAACGAACCATGT 58.579 50.000 3.65 0.00 43.02 3.21
5589 5890 0.094046 GCGACCGTAAACGAACCATG 59.906 55.000 3.65 0.00 43.02 3.66
5590 5891 0.319727 TGCGACCGTAAACGAACCAT 60.320 50.000 3.65 0.00 43.02 3.55
5591 5892 0.529337 TTGCGACCGTAAACGAACCA 60.529 50.000 3.65 0.00 43.02 3.67
5592 5893 0.111134 GTTGCGACCGTAAACGAACC 60.111 55.000 3.65 0.00 43.02 3.62
5593 5894 0.854705 AGTTGCGACCGTAAACGAAC 59.145 50.000 3.65 0.25 43.02 3.95
5594 5895 2.031245 TCTAGTTGCGACCGTAAACGAA 60.031 45.455 3.65 0.00 43.02 3.85
5595 5896 1.535028 TCTAGTTGCGACCGTAAACGA 59.465 47.619 3.65 0.00 43.02 3.85
5596 5897 1.967762 TCTAGTTGCGACCGTAAACG 58.032 50.000 0.00 0.00 39.44 3.60
5597 5898 3.052036 TGTTCTAGTTGCGACCGTAAAC 58.948 45.455 0.00 1.77 0.00 2.01
5598 5899 3.367992 TGTTCTAGTTGCGACCGTAAA 57.632 42.857 0.00 0.00 0.00 2.01
5599 5900 3.367992 TTGTTCTAGTTGCGACCGTAA 57.632 42.857 0.00 0.00 0.00 3.18
5600 5901 3.367992 TTTGTTCTAGTTGCGACCGTA 57.632 42.857 0.00 0.00 0.00 4.02
5601 5902 2.228138 TTTGTTCTAGTTGCGACCGT 57.772 45.000 0.00 0.00 0.00 4.83
5602 5903 3.595709 TTTTTGTTCTAGTTGCGACCG 57.404 42.857 0.00 0.00 0.00 4.79
5603 5904 5.358298 AGATTTTTGTTCTAGTTGCGACC 57.642 39.130 0.00 0.00 0.00 4.79
5604 5905 6.427150 TGAAGATTTTTGTTCTAGTTGCGAC 58.573 36.000 0.00 0.00 0.00 5.19
5605 5906 6.612247 TGAAGATTTTTGTTCTAGTTGCGA 57.388 33.333 0.00 0.00 0.00 5.10
5606 5907 6.183359 GCATGAAGATTTTTGTTCTAGTTGCG 60.183 38.462 0.00 0.00 0.00 4.85
5607 5908 6.642131 TGCATGAAGATTTTTGTTCTAGTTGC 59.358 34.615 0.00 0.00 0.00 4.17
5608 5909 8.752766 ATGCATGAAGATTTTTGTTCTAGTTG 57.247 30.769 0.00 0.00 0.00 3.16
5609 5910 8.579006 TGATGCATGAAGATTTTTGTTCTAGTT 58.421 29.630 2.46 0.00 0.00 2.24
5610 5911 8.114331 TGATGCATGAAGATTTTTGTTCTAGT 57.886 30.769 2.46 0.00 0.00 2.57
5611 5912 8.975410 TTGATGCATGAAGATTTTTGTTCTAG 57.025 30.769 2.46 0.00 0.00 2.43
5612 5913 9.195411 GTTTGATGCATGAAGATTTTTGTTCTA 57.805 29.630 2.46 0.00 0.00 2.10
5613 5914 7.172019 GGTTTGATGCATGAAGATTTTTGTTCT 59.828 33.333 2.46 0.00 0.00 3.01
5614 5915 7.041916 TGGTTTGATGCATGAAGATTTTTGTTC 60.042 33.333 2.46 0.00 0.00 3.18
5615 5916 6.766944 TGGTTTGATGCATGAAGATTTTTGTT 59.233 30.769 2.46 0.00 0.00 2.83
5616 5917 6.289834 TGGTTTGATGCATGAAGATTTTTGT 58.710 32.000 2.46 0.00 0.00 2.83
5617 5918 6.788684 TGGTTTGATGCATGAAGATTTTTG 57.211 33.333 2.46 0.00 0.00 2.44
5618 5919 6.072893 GCTTGGTTTGATGCATGAAGATTTTT 60.073 34.615 2.46 0.00 0.00 1.94
5619 5920 5.410439 GCTTGGTTTGATGCATGAAGATTTT 59.590 36.000 2.46 0.00 0.00 1.82
5620 5921 4.933400 GCTTGGTTTGATGCATGAAGATTT 59.067 37.500 2.46 0.00 0.00 2.17
5621 5922 4.020928 TGCTTGGTTTGATGCATGAAGATT 60.021 37.500 2.46 0.00 0.00 2.40
5622 5923 3.512329 TGCTTGGTTTGATGCATGAAGAT 59.488 39.130 2.46 0.00 0.00 2.40
5623 5924 2.892215 TGCTTGGTTTGATGCATGAAGA 59.108 40.909 2.46 0.00 0.00 2.87
5624 5925 3.250744 CTGCTTGGTTTGATGCATGAAG 58.749 45.455 2.46 0.00 34.79 3.02
5625 5926 2.610976 GCTGCTTGGTTTGATGCATGAA 60.611 45.455 2.46 0.00 34.79 2.57
5626 5927 1.067425 GCTGCTTGGTTTGATGCATGA 60.067 47.619 2.46 0.00 34.79 3.07
5627 5928 1.355971 GCTGCTTGGTTTGATGCATG 58.644 50.000 2.46 0.00 34.79 4.06
5628 5929 0.248289 GGCTGCTTGGTTTGATGCAT 59.752 50.000 0.00 0.00 34.79 3.96
5629 5930 0.828762 AGGCTGCTTGGTTTGATGCA 60.829 50.000 0.00 0.00 0.00 3.96
5630 5931 0.108945 GAGGCTGCTTGGTTTGATGC 60.109 55.000 0.00 0.00 0.00 3.91
5631 5932 1.250328 TGAGGCTGCTTGGTTTGATG 58.750 50.000 0.00 0.00 0.00 3.07
5632 5933 1.822990 CATGAGGCTGCTTGGTTTGAT 59.177 47.619 0.00 0.00 0.00 2.57
5633 5934 1.250328 CATGAGGCTGCTTGGTTTGA 58.750 50.000 0.00 0.00 0.00 2.69
5634 5935 0.245539 CCATGAGGCTGCTTGGTTTG 59.754 55.000 0.00 0.00 0.00 2.93
5635 5936 0.178953 ACCATGAGGCTGCTTGGTTT 60.179 50.000 14.45 0.31 41.85 3.27
5636 5937 0.698238 TACCATGAGGCTGCTTGGTT 59.302 50.000 20.92 11.20 41.85 3.67
5637 5938 0.035056 GTACCATGAGGCTGCTTGGT 60.035 55.000 20.14 20.14 45.17 3.67
5638 5939 0.035152 TGTACCATGAGGCTGCTTGG 60.035 55.000 13.53 13.53 39.06 3.61
5639 5940 2.048444 ATGTACCATGAGGCTGCTTG 57.952 50.000 0.00 0.00 39.06 4.01
5640 5941 2.505407 TGTATGTACCATGAGGCTGCTT 59.495 45.455 0.00 0.00 39.06 3.91
5641 5942 2.118679 TGTATGTACCATGAGGCTGCT 58.881 47.619 0.00 0.00 39.06 4.24
5642 5943 2.620251 TGTATGTACCATGAGGCTGC 57.380 50.000 0.00 0.00 39.06 5.25
5643 5944 2.874701 GCTTGTATGTACCATGAGGCTG 59.125 50.000 0.00 0.00 39.06 4.85
5644 5945 2.774234 AGCTTGTATGTACCATGAGGCT 59.226 45.455 0.00 0.00 39.06 4.58
5645 5946 3.134458 GAGCTTGTATGTACCATGAGGC 58.866 50.000 0.00 0.00 39.06 4.70
5646 5947 4.679373 AGAGCTTGTATGTACCATGAGG 57.321 45.455 0.00 0.00 42.21 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.