Multiple sequence alignment - TraesCS7A01G048800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G048800 chr7A 100.000 2714 0 0 1 2714 22899296 22896583 0.000000e+00 5012.0
1 TraesCS7A01G048800 chr7A 88.340 789 52 22 755 1542 22916649 22915900 0.000000e+00 911.0
2 TraesCS7A01G048800 chr7A 79.132 714 75 37 1637 2324 22915727 22915062 2.500000e-115 425.0
3 TraesCS7A01G048800 chr7A 84.127 63 8 1 657 719 7965782 7965842 2.920000e-05 60.2
4 TraesCS7A01G048800 chr7A 100.000 28 0 0 692 719 8105033 8105060 5.000000e-03 52.8
5 TraesCS7A01G048800 chr7D 88.003 1592 107 39 2 1542 22271189 22269631 0.000000e+00 1805.0
6 TraesCS7A01G048800 chr7D 89.836 974 51 12 754 1686 22509997 22509031 0.000000e+00 1206.0
7 TraesCS7A01G048800 chr7D 89.448 815 55 19 743 1542 22523186 22522388 0.000000e+00 1000.0
8 TraesCS7A01G048800 chr7D 85.776 689 69 12 2034 2714 22269089 22268422 0.000000e+00 702.0
9 TraesCS7A01G048800 chr7D 81.576 787 87 30 1564 2324 22522324 22521570 5.000000e-167 597.0
10 TraesCS7A01G048800 chr7D 91.265 332 9 6 1562 1885 22269569 22269250 4.150000e-118 435.0
11 TraesCS7A01G048800 chr7D 78.175 559 71 25 1637 2183 22509039 22508520 2.620000e-80 309.0
12 TraesCS7A01G048800 chr7D 84.314 204 29 3 2107 2309 22268458 22268257 2.130000e-46 196.0
13 TraesCS7A01G048800 chr7D 86.538 104 9 4 2592 2691 22521455 22521353 2.860000e-20 110.0
14 TraesCS7A01G048800 chr7D 100.000 28 0 0 692 719 400293667 400293694 5.000000e-03 52.8
15 TraesCS7A01G048800 chr4A 88.850 1157 68 26 755 1885 704808055 704806934 0.000000e+00 1365.0
16 TraesCS7A01G048800 chr4A 92.132 788 41 9 755 1542 705055328 705054562 0.000000e+00 1092.0
17 TraesCS7A01G048800 chr4A 89.651 802 57 15 753 1542 705170666 705169879 0.000000e+00 998.0
18 TraesCS7A01G048800 chr4A 81.163 430 45 27 1564 1986 705169818 705169418 2.030000e-81 313.0
19 TraesCS7A01G048800 chr4A 81.924 343 34 17 1564 1902 705054501 705054183 5.760000e-67 265.0
20 TraesCS7A01G048800 chr4A 85.294 204 27 3 2107 2309 704806185 704805984 9.850000e-50 207.0
21 TraesCS7A01G048800 chr5B 91.498 494 42 0 964 1457 469337832 469338325 0.000000e+00 680.0
22 TraesCS7A01G048800 chr6B 91.930 285 22 1 1597 1880 138522438 138522722 5.440000e-107 398.0
23 TraesCS7A01G048800 chr6B 92.202 218 17 0 1099 1316 138522219 138522436 2.620000e-80 309.0
24 TraesCS7A01G048800 chr7B 81.333 375 53 11 289 651 583976144 583975775 3.420000e-74 289.0
25 TraesCS7A01G048800 chr7B 78.261 368 57 17 289 652 732636727 732637075 5.890000e-52 215.0
26 TraesCS7A01G048800 chr3D 82.073 357 43 10 319 658 564925697 564925345 4.420000e-73 285.0
27 TraesCS7A01G048800 chr3B 81.787 291 44 5 289 572 512518540 512518252 4.520000e-58 235.0
28 TraesCS7A01G048800 chr3B 75.668 374 70 12 289 655 578758294 578758653 1.670000e-37 167.0
29 TraesCS7A01G048800 chr3A 78.297 364 62 8 289 651 683683286 683683633 4.550000e-53 219.0
30 TraesCS7A01G048800 chr5D 83.491 212 28 3 289 499 364665205 364665000 9.920000e-45 191.0
31 TraesCS7A01G048800 chr1D 75.610 369 77 11 289 653 384848107 384847748 1.290000e-38 171.0
32 TraesCS7A01G048800 chr1D 76.490 302 54 13 355 655 28485233 28485518 6.050000e-32 148.0
33 TraesCS7A01G048800 chr1D 73.522 389 72 21 330 710 130302058 130302423 4.750000e-23 119.0
34 TraesCS7A01G048800 chr6A 80.769 182 28 6 294 472 454658007 454658184 4.710000e-28 135.0
35 TraesCS7A01G048800 chr1A 96.721 61 2 0 1464 1524 27383214 27383154 4.780000e-18 102.0
36 TraesCS7A01G048800 chr1A 95.082 61 3 0 1464 1524 442726932 442726872 2.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G048800 chr7A 22896583 22899296 2713 True 5012.0 5012 100.0000 1 2714 1 chr7A.!!$R1 2713
1 TraesCS7A01G048800 chr7A 22915062 22916649 1587 True 668.0 911 83.7360 755 2324 2 chr7A.!!$R2 1569
2 TraesCS7A01G048800 chr7D 22268257 22271189 2932 True 784.5 1805 87.3395 2 2714 4 chr7D.!!$R1 2712
3 TraesCS7A01G048800 chr7D 22508520 22509997 1477 True 757.5 1206 84.0055 754 2183 2 chr7D.!!$R2 1429
4 TraesCS7A01G048800 chr7D 22521353 22523186 1833 True 569.0 1000 85.8540 743 2691 3 chr7D.!!$R3 1948
5 TraesCS7A01G048800 chr4A 704805984 704808055 2071 True 786.0 1365 87.0720 755 2309 2 chr4A.!!$R1 1554
6 TraesCS7A01G048800 chr4A 705054183 705055328 1145 True 678.5 1092 87.0280 755 1902 2 chr4A.!!$R2 1147
7 TraesCS7A01G048800 chr4A 705169418 705170666 1248 True 655.5 998 85.4070 753 1986 2 chr4A.!!$R3 1233
8 TraesCS7A01G048800 chr6B 138522219 138522722 503 False 353.5 398 92.0660 1099 1880 2 chr6B.!!$F1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 961 0.036875 CCTCAACTCCCCACCTTCAC 59.963 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2774 0.17924 GAACACGCAGCAATCAGTCG 60.179 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 9.004717 TCTTCTTATATGACTCTATTCTCACCG 57.995 37.037 0.00 0.00 0.00 4.94
63 65 4.081862 TCTCACCGGGACAAGTTTATGTAG 60.082 45.833 6.32 0.00 32.57 2.74
66 68 5.245751 TCACCGGGACAAGTTTATGTAGTAA 59.754 40.000 6.32 0.00 32.57 2.24
69 71 7.765360 CACCGGGACAAGTTTATGTAGTAATTA 59.235 37.037 6.32 0.00 32.57 1.40
156 159 9.965824 ACTTGGATAAAAACAAAGATACAACAG 57.034 29.630 0.00 0.00 0.00 3.16
160 163 2.989422 AACAAAGATACAACAGCGGC 57.011 45.000 0.00 0.00 0.00 6.53
164 167 1.847798 AAGATACAACAGCGGCCCCA 61.848 55.000 0.00 0.00 0.00 4.96
165 168 2.045340 ATACAACAGCGGCCCCAC 60.045 61.111 0.00 0.00 0.00 4.61
168 171 4.028490 CAACAGCGGCCCCACCTA 62.028 66.667 0.00 0.00 35.61 3.08
169 172 3.015145 AACAGCGGCCCCACCTAT 61.015 61.111 0.00 0.00 35.61 2.57
170 173 3.344137 AACAGCGGCCCCACCTATG 62.344 63.158 0.00 0.00 35.61 2.23
196 199 1.570813 CGCACACACACAAAGAGAGA 58.429 50.000 0.00 0.00 0.00 3.10
197 200 2.138320 CGCACACACACAAAGAGAGAT 58.862 47.619 0.00 0.00 0.00 2.75
203 206 4.040829 ACACACACAAAGAGAGATGGATGA 59.959 41.667 0.00 0.00 0.00 2.92
206 209 5.221803 ACACACAAAGAGAGATGGATGAGTT 60.222 40.000 0.00 0.00 0.00 3.01
217 220 6.671779 AGAGATGGATGAGTTAGGAAACTTCT 59.328 38.462 0.00 0.00 46.09 2.85
218 221 6.883744 AGATGGATGAGTTAGGAAACTTCTC 58.116 40.000 0.00 0.00 46.09 2.87
221 224 6.467677 TGGATGAGTTAGGAAACTTCTCAAG 58.532 40.000 0.00 0.00 46.09 3.02
223 226 5.290493 TGAGTTAGGAAACTTCTCAAGCA 57.710 39.130 0.00 0.00 46.09 3.91
229 232 0.540597 AAACTTCTCAAGCAGGGCCC 60.541 55.000 16.46 16.46 0.00 5.80
232 235 2.134630 CTTCTCAAGCAGGGCCCAGT 62.135 60.000 27.56 4.24 0.00 4.00
239 242 2.589540 CAGGGCCCAGTCGCATAA 59.410 61.111 27.56 0.00 0.00 1.90
241 244 0.466189 CAGGGCCCAGTCGCATAAAT 60.466 55.000 27.56 0.00 0.00 1.40
249 252 4.631131 CCCAGTCGCATAAATATGAGTGA 58.369 43.478 4.63 0.00 35.75 3.41
253 256 6.648310 CCAGTCGCATAAATATGAGTGAGAAT 59.352 38.462 4.63 0.00 35.75 2.40
256 259 7.928167 AGTCGCATAAATATGAGTGAGAATGAA 59.072 33.333 4.63 0.00 35.75 2.57
259 262 7.528516 CGCATAAATATGAGTGAGAATGAAACG 59.471 37.037 4.63 0.00 35.75 3.60
261 264 5.741388 AATATGAGTGAGAATGAAACGGC 57.259 39.130 0.00 0.00 0.00 5.68
263 266 1.347707 TGAGTGAGAATGAAACGGCCT 59.652 47.619 0.00 0.00 0.00 5.19
264 267 1.734465 GAGTGAGAATGAAACGGCCTG 59.266 52.381 0.00 0.00 0.00 4.85
267 270 0.960364 GAGAATGAAACGGCCTGGCA 60.960 55.000 22.05 0.00 0.00 4.92
269 272 0.109132 GAATGAAACGGCCTGGCAAG 60.109 55.000 22.05 16.00 0.00 4.01
270 273 2.158561 AATGAAACGGCCTGGCAAGC 62.159 55.000 22.05 0.00 0.00 4.01
295 318 1.078848 GGGCTCCCGCATATAGCTG 60.079 63.158 0.00 0.00 42.61 4.24
302 325 0.593128 CCGCATATAGCTGGCCAAAC 59.407 55.000 7.01 1.16 42.61 2.93
306 329 0.843984 ATATAGCTGGCCAAACGGGT 59.156 50.000 7.01 2.77 39.65 5.28
316 339 0.678950 CCAAACGGGTCAAGCCAATT 59.321 50.000 0.00 0.00 39.65 2.32
342 365 2.048222 CCACGAGCACACCGACAT 60.048 61.111 0.00 0.00 0.00 3.06
379 402 1.300080 CACGACACGGGGTAAACGT 60.300 57.895 0.00 0.00 46.82 3.99
439 470 2.510238 GCTAGGCTGAGCACACGG 60.510 66.667 6.82 0.00 42.36 4.94
557 588 2.654863 CCCAATAGGCCAAACAGTAGG 58.345 52.381 5.01 0.00 0.00 3.18
609 640 1.453197 CCCGATTACCAGTTGGGCC 60.453 63.158 0.00 0.00 42.05 5.80
687 718 2.358582 CGATTGCCAGGCATGATTACAA 59.641 45.455 17.09 0.00 38.76 2.41
764 796 3.805307 CACCGCCGCGCCAAATTA 61.805 61.111 7.42 0.00 0.00 1.40
791 823 3.603144 CCATTTTCTTGGCGCCAAA 57.397 47.368 38.96 26.62 35.33 3.28
874 913 2.600731 CGGCCCCTCTCTCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
875 914 1.528309 CGGCCCCTCTCTCTCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
884 929 3.074985 CCTCTCTCTCTCTCATCCATCCT 59.925 52.174 0.00 0.00 0.00 3.24
916 961 0.036875 CCTCAACTCCCCACCTTCAC 59.963 60.000 0.00 0.00 0.00 3.18
972 1024 0.541998 TCAGGCCGAGGAAGAAGACA 60.542 55.000 0.00 0.00 0.00 3.41
973 1025 0.108424 CAGGCCGAGGAAGAAGACAG 60.108 60.000 0.00 0.00 0.00 3.51
985 1037 0.957888 GAAGACAGTTCAGCCAGCCC 60.958 60.000 0.00 0.00 0.00 5.19
1243 1312 2.750350 CTTGGGTCTCCGCCAAGT 59.250 61.111 9.79 0.00 35.74 3.16
1387 1468 4.778143 GGCGCGAGGTGGTGGATT 62.778 66.667 12.10 0.00 0.00 3.01
1786 1961 1.136305 GTGGCTCTAGCGATTGTGGTA 59.864 52.381 0.00 0.00 43.26 3.25
1844 2021 7.707624 TGAAATGCTTGAATGGAATCTAGTT 57.292 32.000 0.00 0.00 0.00 2.24
1851 2584 7.148188 TGCTTGAATGGAATCTAGTTTCATGTC 60.148 37.037 14.07 8.50 36.13 3.06
1854 2587 7.855375 TGAATGGAATCTAGTTTCATGTCTCT 58.145 34.615 14.07 0.00 36.13 3.10
1859 2592 9.421399 TGGAATCTAGTTTCATGTCTCTATGTA 57.579 33.333 14.07 0.00 0.00 2.29
1875 2608 8.370940 GTCTCTATGTATGAATCAAATCCCTCA 58.629 37.037 0.00 0.00 0.00 3.86
1892 2682 5.384336 TCCCTCAAAATGTGTCTGATCAAA 58.616 37.500 0.00 0.00 0.00 2.69
1893 2683 5.241506 TCCCTCAAAATGTGTCTGATCAAAC 59.758 40.000 0.00 0.00 0.00 2.93
1898 2688 5.954296 AAATGTGTCTGATCAAACCTGAG 57.046 39.130 0.00 0.00 34.23 3.35
1903 2693 6.166279 TGTGTCTGATCAAACCTGAGTTATC 58.834 40.000 0.00 0.00 34.19 1.75
1915 2706 9.838339 CAAACCTGAGTTATCCTGAAATATAGT 57.162 33.333 0.00 0.00 34.19 2.12
1921 2712 9.213777 TGAGTTATCCTGAAATATAGTTCCTGT 57.786 33.333 10.23 0.00 0.00 4.00
1928 2719 8.642432 TCCTGAAATATAGTTCCTGTACTGATG 58.358 37.037 10.23 0.00 0.00 3.07
1933 2724 8.768501 AATATAGTTCCTGTACTGATGTCTGA 57.231 34.615 0.60 0.00 0.00 3.27
1971 2762 9.630098 AAAATAGCAATTTCTGTATTGAGTGTG 57.370 29.630 0.00 0.00 37.65 3.82
1973 2764 5.072741 AGCAATTTCTGTATTGAGTGTGGT 58.927 37.500 0.00 0.00 37.65 4.16
1975 2766 5.182001 GCAATTTCTGTATTGAGTGTGGTCT 59.818 40.000 0.00 0.00 37.65 3.85
1976 2767 6.605849 CAATTTCTGTATTGAGTGTGGTCTG 58.394 40.000 0.00 0.00 37.65 3.51
1977 2768 3.961480 TCTGTATTGAGTGTGGTCTGG 57.039 47.619 0.00 0.00 0.00 3.86
1978 2769 3.506398 TCTGTATTGAGTGTGGTCTGGA 58.494 45.455 0.00 0.00 0.00 3.86
1981 2772 4.096681 TGTATTGAGTGTGGTCTGGAGAT 58.903 43.478 0.00 0.00 0.00 2.75
1982 2773 3.623906 ATTGAGTGTGGTCTGGAGATG 57.376 47.619 0.00 0.00 0.00 2.90
1983 2774 0.610174 TGAGTGTGGTCTGGAGATGC 59.390 55.000 0.00 0.00 0.00 3.91
1985 2776 0.900182 AGTGTGGTCTGGAGATGCGA 60.900 55.000 0.00 0.00 0.00 5.10
1986 2777 0.737715 GTGTGGTCTGGAGATGCGAC 60.738 60.000 0.00 0.00 0.00 5.19
1988 2779 0.459237 GTGGTCTGGAGATGCGACTG 60.459 60.000 0.00 0.00 0.00 3.51
1992 2783 2.200067 GTCTGGAGATGCGACTGATTG 58.800 52.381 0.00 0.00 0.00 2.67
1993 2784 0.935898 CTGGAGATGCGACTGATTGC 59.064 55.000 0.00 0.00 35.54 3.56
1995 2786 0.935898 GGAGATGCGACTGATTGCTG 59.064 55.000 0.00 0.00 36.04 4.41
1996 2787 0.304098 GAGATGCGACTGATTGCTGC 59.696 55.000 0.00 0.00 36.04 5.25
1997 2788 1.011463 GATGCGACTGATTGCTGCG 60.011 57.895 0.00 0.00 36.04 5.18
1999 2790 1.974249 ATGCGACTGATTGCTGCGTG 61.974 55.000 0.00 0.00 36.04 5.34
2000 2791 2.671177 GCGACTGATTGCTGCGTGT 61.671 57.895 0.00 0.00 31.75 4.49
2001 2792 1.862123 CGACTGATTGCTGCGTGTT 59.138 52.632 0.00 0.00 0.00 3.32
2002 2793 0.179240 CGACTGATTGCTGCGTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
2003 2794 1.151668 GACTGATTGCTGCGTGTTCT 58.848 50.000 0.00 0.00 0.00 3.01
2004 2795 1.127582 GACTGATTGCTGCGTGTTCTC 59.872 52.381 0.00 0.00 0.00 2.87
2005 2796 1.270518 ACTGATTGCTGCGTGTTCTCT 60.271 47.619 0.00 0.00 0.00 3.10
2006 2797 1.802960 CTGATTGCTGCGTGTTCTCTT 59.197 47.619 0.00 0.00 0.00 2.85
2007 2798 2.995939 CTGATTGCTGCGTGTTCTCTTA 59.004 45.455 0.00 0.00 0.00 2.10
2008 2799 3.398406 TGATTGCTGCGTGTTCTCTTAA 58.602 40.909 0.00 0.00 0.00 1.85
2009 2800 4.002982 TGATTGCTGCGTGTTCTCTTAAT 58.997 39.130 0.00 0.00 0.00 1.40
2010 2801 4.093408 TGATTGCTGCGTGTTCTCTTAATC 59.907 41.667 0.00 0.00 0.00 1.75
2011 2802 3.319137 TGCTGCGTGTTCTCTTAATCT 57.681 42.857 0.00 0.00 0.00 2.40
2012 2803 3.254060 TGCTGCGTGTTCTCTTAATCTC 58.746 45.455 0.00 0.00 0.00 2.75
2013 2804 3.056536 TGCTGCGTGTTCTCTTAATCTCT 60.057 43.478 0.00 0.00 0.00 3.10
2014 2805 3.929610 GCTGCGTGTTCTCTTAATCTCTT 59.070 43.478 0.00 0.00 0.00 2.85
2015 2806 4.390297 GCTGCGTGTTCTCTTAATCTCTTT 59.610 41.667 0.00 0.00 0.00 2.52
2016 2807 5.445275 GCTGCGTGTTCTCTTAATCTCTTTC 60.445 44.000 0.00 0.00 0.00 2.62
2017 2808 5.538118 TGCGTGTTCTCTTAATCTCTTTCA 58.462 37.500 0.00 0.00 0.00 2.69
2018 2809 5.989168 TGCGTGTTCTCTTAATCTCTTTCAA 59.011 36.000 0.00 0.00 0.00 2.69
2019 2810 6.481976 TGCGTGTTCTCTTAATCTCTTTCAAA 59.518 34.615 0.00 0.00 0.00 2.69
2020 2811 6.792726 GCGTGTTCTCTTAATCTCTTTCAAAC 59.207 38.462 0.00 0.00 0.00 2.93
2021 2812 7.004225 CGTGTTCTCTTAATCTCTTTCAAACG 58.996 38.462 0.00 0.00 0.00 3.60
2022 2813 7.306632 CGTGTTCTCTTAATCTCTTTCAAACGT 60.307 37.037 0.00 0.00 0.00 3.99
2023 2814 8.975439 GTGTTCTCTTAATCTCTTTCAAACGTA 58.025 33.333 0.00 0.00 0.00 3.57
2024 2815 9.537192 TGTTCTCTTAATCTCTTTCAAACGTAA 57.463 29.630 0.00 0.00 0.00 3.18
2027 2818 9.706691 TCTCTTAATCTCTTTCAAACGTAATGT 57.293 29.630 0.00 0.00 0.00 2.71
2059 2850 9.838339 TTTCTTTCTATATCTGAATCAAGTCCC 57.162 33.333 0.00 0.00 0.00 4.46
2086 2877 3.599343 CATCGTCTGATCAACCCTGAAA 58.401 45.455 0.00 0.00 34.49 2.69
2087 2878 3.040147 TCGTCTGATCAACCCTGAAAC 57.960 47.619 0.00 0.00 34.49 2.78
2089 2880 3.138304 CGTCTGATCAACCCTGAAACAA 58.862 45.455 0.00 0.00 34.49 2.83
2096 2887 8.106462 TCTGATCAACCCTGAAACAATATGTTA 58.894 33.333 0.00 0.00 40.14 2.41
2103 2894 8.066612 ACCCTGAAACAATATGTTATTGAAGG 57.933 34.615 12.83 12.08 40.14 3.46
2104 2895 7.124147 ACCCTGAAACAATATGTTATTGAAGGG 59.876 37.037 22.70 22.70 40.14 3.95
2132 2923 6.603599 ACCCTGAAATAATTTAGCAGTTCCTC 59.396 38.462 0.00 0.00 0.00 3.71
2140 2931 6.613153 AATTTAGCAGTTCCTCTACTGAGT 57.387 37.500 7.88 0.00 46.72 3.41
2148 2939 6.155827 CAGTTCCTCTACTGAGTTCTGAAAG 58.844 44.000 0.00 0.00 46.72 2.62
2151 2942 5.141182 TCCTCTACTGAGTTCTGAAAGTGT 58.859 41.667 0.00 0.00 38.61 3.55
2154 2945 5.520632 TCTACTGAGTTCTGAAAGTGTTCG 58.479 41.667 0.00 0.00 36.46 3.95
2166 2957 4.335315 TGAAAGTGTTCGATGCTGTTTCTT 59.665 37.500 0.00 0.00 36.46 2.52
2205 2996 6.413052 AGTTCAACTGAAGCTATGATGTGAT 58.587 36.000 0.00 0.00 34.27 3.06
2206 2997 6.883217 AGTTCAACTGAAGCTATGATGTGATT 59.117 34.615 0.00 0.00 34.27 2.57
2223 3014 8.499967 TGATGTGATTTGCAAAATGAATTCAAG 58.500 29.630 17.19 4.36 0.00 3.02
2229 3020 6.621316 TTGCAAAATGAATTCAAGTGCAAT 57.379 29.167 31.90 10.11 41.56 3.56
2234 3025 5.750352 AATGAATTCAAGTGCAATTCCCT 57.250 34.783 13.09 0.00 38.84 4.20
2248 3039 4.640201 GCAATTCCCTATCTGTTGTTGCTA 59.360 41.667 0.00 0.00 38.08 3.49
2263 3054 6.203530 TGTTGTTGCTAACTGAGATCTGAAAG 59.796 38.462 0.00 0.00 0.00 2.62
2266 3057 5.474578 TGCTAACTGAGATCTGAAAGTGT 57.525 39.130 0.00 0.00 33.76 3.55
2267 3058 5.858381 TGCTAACTGAGATCTGAAAGTGTT 58.142 37.500 0.00 0.00 33.76 3.32
2268 3059 5.928839 TGCTAACTGAGATCTGAAAGTGTTC 59.071 40.000 0.00 0.00 33.76 3.18
2269 3060 5.350091 GCTAACTGAGATCTGAAAGTGTTCC 59.650 44.000 0.00 0.00 32.28 3.62
2274 3065 7.509546 ACTGAGATCTGAAAGTGTTCCTTTTA 58.490 34.615 0.00 0.00 43.47 1.52
2294 3085 9.754382 CCTTTTATTGCTTATGTTTGATGCTAT 57.246 29.630 0.00 0.00 0.00 2.97
2297 3088 9.734620 TTTATTGCTTATGTTTGATGCTATGTC 57.265 29.630 0.00 0.00 0.00 3.06
2300 3091 7.719778 TGCTTATGTTTGATGCTATGTCTAG 57.280 36.000 0.00 0.00 0.00 2.43
2308 3099 9.448438 TGTTTGATGCTATGTCTAGTAACATTT 57.552 29.630 2.67 0.00 40.32 2.32
2326 3117 5.640147 ACATTTATGTTTTCCCAGGTCAGA 58.360 37.500 0.00 0.00 37.90 3.27
2327 3118 6.074648 ACATTTATGTTTTCCCAGGTCAGAA 58.925 36.000 0.00 0.00 37.90 3.02
2362 3153 1.541147 CGTTCCATGTGCAATTCCAGT 59.459 47.619 0.00 0.00 0.00 4.00
2366 3157 3.499338 TCCATGTGCAATTCCAGTTCTT 58.501 40.909 0.00 0.00 0.00 2.52
2367 3158 3.256383 TCCATGTGCAATTCCAGTTCTTG 59.744 43.478 0.00 0.00 0.00 3.02
2377 3168 2.620251 CCAGTTCTTGGTGTGTCAGA 57.380 50.000 0.00 0.00 42.41 3.27
2378 3169 3.131709 CCAGTTCTTGGTGTGTCAGAT 57.868 47.619 0.00 0.00 42.41 2.90
2379 3170 3.480470 CCAGTTCTTGGTGTGTCAGATT 58.520 45.455 0.00 0.00 42.41 2.40
2380 3171 3.251729 CCAGTTCTTGGTGTGTCAGATTG 59.748 47.826 0.00 0.00 42.41 2.67
2385 3176 3.118075 TCTTGGTGTGTCAGATTGGTTGA 60.118 43.478 0.00 0.00 0.00 3.18
2388 3179 2.749621 GGTGTGTCAGATTGGTTGATCC 59.250 50.000 0.00 0.00 0.00 3.36
2418 3209 1.667724 GGTGTGATCTTTGAGATGCCG 59.332 52.381 0.00 0.00 34.53 5.69
2425 3216 5.065218 GTGATCTTTGAGATGCCGTATGTTT 59.935 40.000 0.00 0.00 34.53 2.83
2428 3219 4.759693 TCTTTGAGATGCCGTATGTTTGTT 59.240 37.500 0.00 0.00 0.00 2.83
2453 3244 6.591062 TGAAATGCTGGAATGAAAAGTAATGC 59.409 34.615 0.00 0.00 0.00 3.56
2462 3259 9.194972 TGGAATGAAAAGTAATGCCATGTATAA 57.805 29.630 0.00 0.00 0.00 0.98
2487 3284 6.492772 AGAATCAAATCCCTCCAGAAATATGC 59.507 38.462 0.00 0.00 0.00 3.14
2490 3287 5.372363 TCAAATCCCTCCAGAAATATGCCTA 59.628 40.000 0.00 0.00 0.00 3.93
2572 3369 8.730680 CCTAAAATAACAGTTGCTGTAATGAGT 58.269 33.333 1.97 0.00 44.62 3.41
2616 3413 4.221342 CTGTGTGTTCATCGAAATGTTGG 58.779 43.478 0.00 0.00 34.32 3.77
2626 3423 8.500773 GTTCATCGAAATGTTGGAACTAAGTAA 58.499 33.333 0.00 0.00 34.32 2.24
2675 3943 9.927081 ATCAAATCCCTTAAGTATTGTCTGATT 57.073 29.630 0.97 0.00 0.00 2.57
2703 3971 9.448587 ACCCTGAAATAATATAGTAGTTCCTGT 57.551 33.333 15.35 8.55 29.13 4.00
2712 3980 8.937207 AATATAGTAGTTCCTGTACCGAAGAT 57.063 34.615 0.00 0.00 0.00 2.40
2713 3981 6.880942 ATAGTAGTTCCTGTACCGAAGATC 57.119 41.667 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 2.526888 TGTCCCGGTGAGAATAGAGT 57.473 50.000 0.00 0.00 0.00 3.24
34 36 2.761208 ACTTGTCCCGGTGAGAATAGAG 59.239 50.000 0.00 0.00 0.00 2.43
128 131 9.959749 GTTGTATCTTTGTTTTTATCCAAGTCA 57.040 29.630 0.00 0.00 0.00 3.41
142 145 1.165270 GGCCGCTGTTGTATCTTTGT 58.835 50.000 0.00 0.00 0.00 2.83
143 146 0.451783 GGGCCGCTGTTGTATCTTTG 59.548 55.000 0.00 0.00 0.00 2.77
146 149 2.297895 TGGGGCCGCTGTTGTATCT 61.298 57.895 21.80 0.00 0.00 1.98
173 176 4.877882 TTTGTGTGTGTGCGCGCG 62.878 61.111 28.44 28.44 38.36 6.86
174 177 3.018428 CTTTGTGTGTGTGCGCGC 61.018 61.111 27.26 27.26 36.27 6.86
175 178 1.368019 CTCTTTGTGTGTGTGCGCG 60.368 57.895 0.00 0.00 0.00 6.86
176 179 0.041839 CTCTCTTTGTGTGTGTGCGC 60.042 55.000 0.00 0.00 0.00 6.09
177 180 1.570813 TCTCTCTTTGTGTGTGTGCG 58.429 50.000 0.00 0.00 0.00 5.34
181 184 4.572909 TCATCCATCTCTCTTTGTGTGTG 58.427 43.478 0.00 0.00 0.00 3.82
183 186 4.829968 ACTCATCCATCTCTCTTTGTGTG 58.170 43.478 0.00 0.00 0.00 3.82
185 188 6.047870 CCTAACTCATCCATCTCTCTTTGTG 58.952 44.000 0.00 0.00 0.00 3.33
187 190 6.477053 TCCTAACTCATCCATCTCTCTTTG 57.523 41.667 0.00 0.00 0.00 2.77
189 192 6.671779 AGTTTCCTAACTCATCCATCTCTCTT 59.328 38.462 0.00 0.00 40.60 2.85
196 199 6.627087 TGAGAAGTTTCCTAACTCATCCAT 57.373 37.500 0.00 0.00 43.74 3.41
197 200 6.433847 TTGAGAAGTTTCCTAACTCATCCA 57.566 37.500 0.00 0.00 43.74 3.41
203 206 4.505742 CCCTGCTTGAGAAGTTTCCTAACT 60.506 45.833 0.00 0.00 46.44 2.24
206 209 2.290323 GCCCTGCTTGAGAAGTTTCCTA 60.290 50.000 0.00 0.00 0.00 2.94
217 220 4.020617 CGACTGGGCCCTGCTTGA 62.021 66.667 27.51 2.35 0.00 3.02
221 224 3.697439 TTATGCGACTGGGCCCTGC 62.697 63.158 27.51 22.33 0.00 4.85
223 226 1.136828 TATTTATGCGACTGGGCCCT 58.863 50.000 25.70 2.15 0.00 5.19
229 232 7.383300 TCATTCTCACTCATATTTATGCGACTG 59.617 37.037 0.00 0.00 33.76 3.51
232 235 8.551205 GTTTCATTCTCACTCATATTTATGCGA 58.449 33.333 0.00 0.00 33.76 5.10
239 242 4.576463 GGCCGTTTCATTCTCACTCATATT 59.424 41.667 0.00 0.00 0.00 1.28
241 244 3.197766 AGGCCGTTTCATTCTCACTCATA 59.802 43.478 0.00 0.00 0.00 2.15
249 252 0.539438 TTGCCAGGCCGTTTCATTCT 60.539 50.000 9.64 0.00 0.00 2.40
253 256 3.294493 GCTTGCCAGGCCGTTTCA 61.294 61.111 9.64 0.00 0.00 2.69
256 259 3.790416 TTCTGCTTGCCAGGCCGTT 62.790 57.895 9.64 0.00 42.05 4.44
259 262 3.066814 CCTTCTGCTTGCCAGGCC 61.067 66.667 9.64 0.00 42.05 5.19
261 264 2.362120 CCCCTTCTGCTTGCCAGG 60.362 66.667 0.00 0.00 42.05 4.45
263 266 4.684134 GCCCCCTTCTGCTTGCCA 62.684 66.667 0.00 0.00 0.00 4.92
264 267 4.372999 AGCCCCCTTCTGCTTGCC 62.373 66.667 0.00 0.00 32.94 4.52
295 318 3.680786 GGCTTGACCCGTTTGGCC 61.681 66.667 0.00 0.00 37.83 5.36
335 358 1.299648 CATGGTGGGTCATGTCGGT 59.700 57.895 0.00 0.00 39.56 4.69
370 393 2.632544 GGGCAAGGCACGTTTACCC 61.633 63.158 0.00 0.00 0.00 3.69
383 406 3.372730 GTTCTGCATGCCGGGCAA 61.373 61.111 27.70 8.95 43.62 4.52
414 445 1.153208 CTCAGCCTAGCAGCCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
496 527 4.668138 TTTTCCTACTGGGCCAGTATTT 57.332 40.909 38.90 21.31 44.49 1.40
797 834 2.117865 AGGAAATGGAGCAGAGAGAGG 58.882 52.381 0.00 0.00 0.00 3.69
874 913 2.796193 CGGCGGTGAGGATGGATGA 61.796 63.158 0.00 0.00 0.00 2.92
875 914 2.280389 CGGCGGTGAGGATGGATG 60.280 66.667 0.00 0.00 0.00 3.51
884 929 3.247056 TTGAGGATTGCGGCGGTGA 62.247 57.895 9.78 0.00 0.00 4.02
916 961 1.153208 GCTGCTCTGTGGATCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
972 1024 1.965754 GAGATCGGGCTGGCTGAACT 61.966 60.000 20.26 20.26 0.00 3.01
973 1025 1.522580 GAGATCGGGCTGGCTGAAC 60.523 63.158 17.16 14.21 0.00 3.18
985 1037 2.680312 ACCATGGTGACTTGAGATCG 57.320 50.000 18.99 0.00 37.69 3.69
1228 1285 3.319198 GGACTTGGCGGAGACCCA 61.319 66.667 0.00 0.00 25.51 4.51
1243 1312 2.747686 GACCTTGGACTTGGCGGA 59.252 61.111 0.00 0.00 0.00 5.54
1387 1468 0.459237 GACTCGGAGTCCTCGTCGTA 60.459 60.000 24.41 0.00 39.28 3.43
1786 1961 3.368220 GCATACTGCATCTCCGAGATCAT 60.368 47.826 8.00 0.00 44.26 2.45
1851 2584 9.565090 TTTGAGGGATTTGATTCATACATAGAG 57.435 33.333 0.00 0.00 0.00 2.43
1859 2592 7.179694 AGACACATTTTGAGGGATTTGATTCAT 59.820 33.333 0.00 0.00 0.00 2.57
1875 2608 5.829924 ACTCAGGTTTGATCAGACACATTTT 59.170 36.000 17.33 0.00 31.68 1.82
1880 2613 5.582665 GGATAACTCAGGTTTGATCAGACAC 59.417 44.000 17.33 7.55 36.92 3.67
1892 2682 8.652290 GGAACTATATTTCAGGATAACTCAGGT 58.348 37.037 5.32 0.00 0.00 4.00
1893 2683 8.875168 AGGAACTATATTTCAGGATAACTCAGG 58.125 37.037 5.32 0.00 36.02 3.86
1903 2693 8.424918 ACATCAGTACAGGAACTATATTTCAGG 58.575 37.037 5.32 0.00 36.02 3.86
1915 2706 7.453393 AGATTTTTCAGACATCAGTACAGGAA 58.547 34.615 0.00 0.00 0.00 3.36
1922 2713 8.924511 TTTAGGAAGATTTTTCAGACATCAGT 57.075 30.769 0.00 0.00 0.00 3.41
1951 2742 5.182001 AGACCACACTCAATACAGAAATTGC 59.818 40.000 0.00 0.00 36.89 3.56
1955 2746 4.346709 TCCAGACCACACTCAATACAGAAA 59.653 41.667 0.00 0.00 0.00 2.52
1957 2748 3.506398 TCCAGACCACACTCAATACAGA 58.494 45.455 0.00 0.00 0.00 3.41
1959 2750 3.506398 TCTCCAGACCACACTCAATACA 58.494 45.455 0.00 0.00 0.00 2.29
1968 2759 0.900182 AGTCGCATCTCCAGACCACA 60.900 55.000 0.00 0.00 35.65 4.17
1969 2760 0.459237 CAGTCGCATCTCCAGACCAC 60.459 60.000 0.00 0.00 35.65 4.16
1970 2761 0.611896 TCAGTCGCATCTCCAGACCA 60.612 55.000 0.00 0.00 35.65 4.02
1971 2762 0.749649 ATCAGTCGCATCTCCAGACC 59.250 55.000 0.00 0.00 35.65 3.85
1973 2764 1.472201 GCAATCAGTCGCATCTCCAGA 60.472 52.381 0.00 0.00 0.00 3.86
1975 2766 0.538584 AGCAATCAGTCGCATCTCCA 59.461 50.000 0.00 0.00 0.00 3.86
1976 2767 0.935898 CAGCAATCAGTCGCATCTCC 59.064 55.000 0.00 0.00 0.00 3.71
1977 2768 0.304098 GCAGCAATCAGTCGCATCTC 59.696 55.000 0.00 0.00 0.00 2.75
1978 2769 1.426816 CGCAGCAATCAGTCGCATCT 61.427 55.000 0.00 0.00 0.00 2.90
1981 2772 2.357396 ACGCAGCAATCAGTCGCA 60.357 55.556 0.00 0.00 0.00 5.10
1982 2773 2.097160 CACGCAGCAATCAGTCGC 59.903 61.111 0.00 0.00 0.00 5.19
1983 2774 0.179240 GAACACGCAGCAATCAGTCG 60.179 55.000 0.00 0.00 0.00 4.18
1985 2776 1.151668 GAGAACACGCAGCAATCAGT 58.848 50.000 0.00 0.00 0.00 3.41
1986 2777 1.436600 AGAGAACACGCAGCAATCAG 58.563 50.000 0.00 0.00 0.00 2.90
1988 2779 4.331168 AGATTAAGAGAACACGCAGCAATC 59.669 41.667 0.00 0.00 0.00 2.67
1992 2783 3.516615 AGAGATTAAGAGAACACGCAGC 58.483 45.455 0.00 0.00 0.00 5.25
1993 2784 5.635280 TGAAAGAGATTAAGAGAACACGCAG 59.365 40.000 0.00 0.00 0.00 5.18
1995 2786 6.467723 TTGAAAGAGATTAAGAGAACACGC 57.532 37.500 0.00 0.00 0.00 5.34
1996 2787 7.004225 CGTTTGAAAGAGATTAAGAGAACACG 58.996 38.462 0.00 0.00 0.00 4.49
1997 2788 7.852516 ACGTTTGAAAGAGATTAAGAGAACAC 58.147 34.615 0.00 0.00 0.00 3.32
2001 2792 9.706691 ACATTACGTTTGAAAGAGATTAAGAGA 57.293 29.630 0.00 0.00 0.00 3.10
2033 2824 9.838339 GGGACTTGATTCAGATATAGAAAGAAA 57.162 33.333 0.00 0.00 0.00 2.52
2034 2825 9.218525 AGGGACTTGATTCAGATATAGAAAGAA 57.781 33.333 0.00 0.00 27.25 2.52
2035 2826 8.789767 AGGGACTTGATTCAGATATAGAAAGA 57.210 34.615 0.00 0.00 27.25 2.52
2036 2827 8.646004 TGAGGGACTTGATTCAGATATAGAAAG 58.354 37.037 0.00 0.00 41.55 2.62
2037 2828 8.553085 TGAGGGACTTGATTCAGATATAGAAA 57.447 34.615 0.00 0.00 41.55 2.52
2038 2829 8.553085 TTGAGGGACTTGATTCAGATATAGAA 57.447 34.615 0.00 0.00 41.55 2.10
2039 2830 7.256119 GCTTGAGGGACTTGATTCAGATATAGA 60.256 40.741 0.00 0.00 41.55 1.98
2040 2831 6.873076 GCTTGAGGGACTTGATTCAGATATAG 59.127 42.308 0.00 0.00 41.55 1.31
2041 2832 6.327365 TGCTTGAGGGACTTGATTCAGATATA 59.673 38.462 0.00 0.00 41.55 0.86
2042 2833 5.131642 TGCTTGAGGGACTTGATTCAGATAT 59.868 40.000 0.00 0.00 41.55 1.63
2055 2846 0.532573 TCAGACGATGCTTGAGGGAC 59.467 55.000 0.00 0.00 0.00 4.46
2059 2850 2.606725 GGTTGATCAGACGATGCTTGAG 59.393 50.000 0.00 0.00 29.66 3.02
2086 2877 7.418337 GGGTTTCCCTTCAATAACATATTGT 57.582 36.000 9.28 0.00 41.34 2.71
2103 2894 7.170393 ACTGCTAAATTATTTCAGGGTTTCC 57.830 36.000 9.97 0.00 0.00 3.13
2104 2895 7.759886 GGAACTGCTAAATTATTTCAGGGTTTC 59.240 37.037 9.97 5.89 0.00 2.78
2107 2898 6.494059 AGGAACTGCTAAATTATTTCAGGGT 58.506 36.000 9.97 0.34 37.18 4.34
2120 2911 5.184096 CAGAACTCAGTAGAGGAACTGCTAA 59.816 44.000 0.00 0.00 46.44 3.09
2123 2914 3.508012 TCAGAACTCAGTAGAGGAACTGC 59.492 47.826 0.00 0.00 46.44 4.40
2124 2915 5.713792 TTCAGAACTCAGTAGAGGAACTG 57.286 43.478 0.00 0.00 46.44 3.16
2132 2923 5.520632 TCGAACACTTTCAGAACTCAGTAG 58.479 41.667 0.00 0.00 0.00 2.57
2140 2931 3.466836 ACAGCATCGAACACTTTCAGAA 58.533 40.909 0.00 0.00 0.00 3.02
2148 2939 4.725556 TGTAAGAAACAGCATCGAACAC 57.274 40.909 0.00 0.00 33.01 3.32
2151 2942 6.734137 ACAAAATGTAAGAAACAGCATCGAA 58.266 32.000 0.00 0.00 42.70 3.71
2187 2978 4.945543 TGCAAATCACATCATAGCTTCAGT 59.054 37.500 0.00 0.00 0.00 3.41
2188 2979 5.494632 TGCAAATCACATCATAGCTTCAG 57.505 39.130 0.00 0.00 0.00 3.02
2198 2989 8.500773 ACTTGAATTCATTTTGCAAATCACATC 58.499 29.630 13.65 8.30 0.00 3.06
2199 2990 8.286800 CACTTGAATTCATTTTGCAAATCACAT 58.713 29.630 13.65 0.00 0.00 3.21
2205 2996 6.432607 TTGCACTTGAATTCATTTTGCAAA 57.567 29.167 30.41 21.06 39.79 3.68
2206 2997 6.621316 ATTGCACTTGAATTCATTTTGCAA 57.379 29.167 32.37 32.37 43.20 4.08
2223 3014 4.737054 CAACAACAGATAGGGAATTGCAC 58.263 43.478 0.00 0.00 0.00 4.57
2229 3020 5.012664 TCAGTTAGCAACAACAGATAGGGAA 59.987 40.000 0.00 0.00 0.00 3.97
2234 3025 7.038048 CAGATCTCAGTTAGCAACAACAGATA 58.962 38.462 0.00 0.00 0.00 1.98
2248 3039 5.559148 AGGAACACTTTCAGATCTCAGTT 57.441 39.130 0.00 0.00 32.80 3.16
2263 3054 8.810652 TCAAACATAAGCAATAAAAGGAACAC 57.189 30.769 0.00 0.00 0.00 3.32
2266 3057 8.313292 AGCATCAAACATAAGCAATAAAAGGAA 58.687 29.630 0.00 0.00 0.00 3.36
2267 3058 7.839907 AGCATCAAACATAAGCAATAAAAGGA 58.160 30.769 0.00 0.00 0.00 3.36
2268 3059 9.754382 ATAGCATCAAACATAAGCAATAAAAGG 57.246 29.630 0.00 0.00 0.00 3.11
2274 3065 7.578310 AGACATAGCATCAAACATAAGCAAT 57.422 32.000 0.00 0.00 0.00 3.56
2308 3099 3.073798 TGCTTCTGACCTGGGAAAACATA 59.926 43.478 0.00 0.00 0.00 2.29
2309 3100 2.158475 TGCTTCTGACCTGGGAAAACAT 60.158 45.455 0.00 0.00 0.00 2.71
2310 3101 1.214175 TGCTTCTGACCTGGGAAAACA 59.786 47.619 0.00 0.00 0.00 2.83
2311 3102 1.609072 GTGCTTCTGACCTGGGAAAAC 59.391 52.381 0.00 0.00 0.00 2.43
2314 3105 0.397941 CAGTGCTTCTGACCTGGGAA 59.602 55.000 0.00 0.00 46.27 3.97
2315 3106 0.471780 TCAGTGCTTCTGACCTGGGA 60.472 55.000 0.00 0.00 46.77 4.37
2316 3107 2.061220 TCAGTGCTTCTGACCTGGG 58.939 57.895 0.00 0.00 46.77 4.45
2340 3131 2.228582 CTGGAATTGCACATGGAACGAA 59.771 45.455 0.00 0.00 0.00 3.85
2362 3153 3.576078 ACCAATCTGACACACCAAGAA 57.424 42.857 0.00 0.00 0.00 2.52
2366 3157 3.411446 GATCAACCAATCTGACACACCA 58.589 45.455 0.00 0.00 0.00 4.17
2367 3158 2.749621 GGATCAACCAATCTGACACACC 59.250 50.000 0.00 0.00 38.79 4.16
2368 3159 3.411446 TGGATCAACCAATCTGACACAC 58.589 45.455 0.00 0.00 46.75 3.82
2369 3160 3.786368 TGGATCAACCAATCTGACACA 57.214 42.857 0.00 0.00 46.75 3.72
2380 3171 1.303309 CCTCAATCGCTGGATCAACC 58.697 55.000 0.00 0.00 39.54 3.77
2385 3176 0.904649 TCACACCTCAATCGCTGGAT 59.095 50.000 0.00 0.00 0.00 3.41
2388 3179 2.306341 AGATCACACCTCAATCGCTG 57.694 50.000 0.00 0.00 0.00 5.18
2391 3182 4.498241 TCTCAAAGATCACACCTCAATCG 58.502 43.478 0.00 0.00 0.00 3.34
2418 3209 6.867816 TCATTCCAGCATTTCAACAAACATAC 59.132 34.615 0.00 0.00 0.00 2.39
2425 3216 5.916318 ACTTTTCATTCCAGCATTTCAACA 58.084 33.333 0.00 0.00 0.00 3.33
2428 3219 6.591062 GCATTACTTTTCATTCCAGCATTTCA 59.409 34.615 0.00 0.00 0.00 2.69
2453 3244 7.233632 TGGAGGGATTTGATTCTTATACATGG 58.766 38.462 0.00 0.00 0.00 3.66
2462 3259 6.492772 GCATATTTCTGGAGGGATTTGATTCT 59.507 38.462 0.00 0.00 0.00 2.40
2487 3284 8.752005 TTCAGGATATTTCAGGTTTGATTAGG 57.248 34.615 0.00 0.00 32.27 2.69
2490 3287 8.421249 TGTTTCAGGATATTTCAGGTTTGATT 57.579 30.769 0.00 0.00 32.27 2.57
2572 3369 2.821378 CAATGCATCTCCAAGACCACAA 59.179 45.455 0.00 0.00 0.00 3.33
2616 3413 8.515414 AGAAAGAAACATGGCATTACTTAGTTC 58.485 33.333 0.00 0.00 0.00 3.01
2626 3423 9.412460 TGATAGAAATAGAAAGAAACATGGCAT 57.588 29.630 0.00 0.00 0.00 4.40
2655 3923 7.404980 AGGGTTAATCAGACAATACTTAAGGGA 59.595 37.037 7.53 0.00 0.00 4.20
2688 3956 8.564509 GATCTTCGGTACAGGAACTACTATAT 57.435 38.462 0.00 0.00 36.02 0.86
2689 3957 7.976135 GATCTTCGGTACAGGAACTACTATA 57.024 40.000 0.00 0.00 36.02 1.31
2690 3958 6.880942 GATCTTCGGTACAGGAACTACTAT 57.119 41.667 0.00 0.00 36.02 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.