Multiple sequence alignment - TraesCS7A01G048000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G048000 chr7A 100.000 2696 0 0 1 2696 21959468 21956773 0.000000e+00 4979.0
1 TraesCS7A01G048000 chr7A 93.382 1647 85 16 81 1713 21712994 21711358 0.000000e+00 2416.0
2 TraesCS7A01G048000 chr7A 94.128 1158 59 6 387 1542 21986184 21985034 0.000000e+00 1753.0
3 TraesCS7A01G048000 chr7A 94.424 1112 54 5 387 1497 21597371 21596267 0.000000e+00 1703.0
4 TraesCS7A01G048000 chr7A 96.479 710 17 6 1 706 21561759 21561054 0.000000e+00 1166.0
5 TraesCS7A01G048000 chr7A 85.993 614 78 5 1135 1747 21609320 21609926 0.000000e+00 651.0
6 TraesCS7A01G048000 chr7A 82.305 243 23 7 82 323 21597592 21597369 2.740000e-45 193.0
7 TraesCS7A01G048000 chr7A 79.612 309 29 14 789 1084 22017566 22017853 9.850000e-45 191.0
8 TraesCS7A01G048000 chr7A 85.417 192 8 9 775 958 21608910 21609089 5.930000e-42 182.0
9 TraesCS7A01G048000 chr7A 81.481 243 25 7 82 323 21986405 21986182 5.930000e-42 182.0
10 TraesCS7A01G048000 chr7A 79.137 278 30 21 1990 2250 21610156 21610422 1.660000e-37 167.0
11 TraesCS7A01G048000 chr7A 85.816 141 10 6 1563 1694 22367153 22367014 1.010000e-29 141.0
12 TraesCS7A01G048000 chr7A 97.333 75 0 2 1 73 616516588 616516514 2.820000e-25 126.0
13 TraesCS7A01G048000 chr7A 95.122 41 1 1 2128 2167 22020972 22021012 2.240000e-06 63.9
14 TraesCS7A01G048000 chr4A 91.987 1510 65 12 872 2356 669044103 669045581 0.000000e+00 2067.0
15 TraesCS7A01G048000 chr4A 90.165 1088 59 14 432 1506 712733791 712734843 0.000000e+00 1373.0
16 TraesCS7A01G048000 chr4A 89.338 1088 67 14 432 1506 712764450 712765501 0.000000e+00 1321.0
17 TraesCS7A01G048000 chr4A 87.738 734 56 17 81 812 669043398 669044099 0.000000e+00 826.0
18 TraesCS7A01G048000 chr4A 88.301 359 18 5 81 435 712733373 712733711 2.500000e-110 409.0
19 TraesCS7A01G048000 chr4A 87.744 359 20 9 81 435 712764041 712764379 5.410000e-107 398.0
20 TraesCS7A01G048000 chr7D 88.758 1619 83 34 149 1748 21121414 21122952 0.000000e+00 1890.0
21 TraesCS7A01G048000 chr7D 88.758 1619 83 34 149 1748 21486201 21484663 0.000000e+00 1890.0
22 TraesCS7A01G048000 chr7D 92.489 466 5 11 1838 2295 21122953 21123396 8.140000e-180 640.0
23 TraesCS7A01G048000 chr7D 92.489 466 5 11 1838 2295 21484662 21484219 8.140000e-180 640.0
24 TraesCS7A01G048000 chr7D 86.990 515 60 4 1234 1747 21852465 21851957 8.370000e-160 573.0
25 TraesCS7A01G048000 chr7D 77.301 489 58 30 1883 2360 21851813 21851367 3.470000e-59 239.0
26 TraesCS7A01G048000 chr7D 88.360 189 19 3 627 813 21118688 21118875 9.710000e-55 224.0
27 TraesCS7A01G048000 chr7D 96.491 57 1 1 2640 2696 21123395 21123450 2.860000e-15 93.5
28 TraesCS7A01G048000 chr7D 96.491 57 1 1 2640 2696 21484220 21484165 2.860000e-15 93.5
29 TraesCS7A01G048000 chr2A 100.000 70 0 0 1 70 708887809 708887878 2.180000e-26 130.0
30 TraesCS7A01G048000 chr5A 95.062 81 2 2 1 80 708794381 708794460 2.820000e-25 126.0
31 TraesCS7A01G048000 chr6B 97.297 74 0 2 1 73 599035013 599035085 1.010000e-24 124.0
32 TraesCS7A01G048000 chr6A 96.104 77 2 1 1 76 371080584 371080508 1.010000e-24 124.0
33 TraesCS7A01G048000 chr6A 95.946 74 3 0 2 75 482014035 482014108 1.310000e-23 121.0
34 TraesCS7A01G048000 chr1A 97.297 74 1 1 1 73 559282292 559282365 1.010000e-24 124.0
35 TraesCS7A01G048000 chr1A 93.750 80 5 0 1 80 526526275 526526354 1.310000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G048000 chr7A 21956773 21959468 2695 True 4979.000000 4979 100.000000 1 2696 1 chr7A.!!$R3 2695
1 TraesCS7A01G048000 chr7A 21711358 21712994 1636 True 2416.000000 2416 93.382000 81 1713 1 chr7A.!!$R2 1632
2 TraesCS7A01G048000 chr7A 21561054 21561759 705 True 1166.000000 1166 96.479000 1 706 1 chr7A.!!$R1 705
3 TraesCS7A01G048000 chr7A 21985034 21986405 1371 True 967.500000 1753 87.804500 82 1542 2 chr7A.!!$R7 1460
4 TraesCS7A01G048000 chr7A 21596267 21597592 1325 True 948.000000 1703 88.364500 82 1497 2 chr7A.!!$R6 1415
5 TraesCS7A01G048000 chr7A 21608910 21610422 1512 False 333.333333 651 83.515667 775 2250 3 chr7A.!!$F1 1475
6 TraesCS7A01G048000 chr4A 669043398 669045581 2183 False 1446.500000 2067 89.862500 81 2356 2 chr4A.!!$F1 2275
7 TraesCS7A01G048000 chr4A 712733373 712734843 1470 False 891.000000 1373 89.233000 81 1506 2 chr4A.!!$F2 1425
8 TraesCS7A01G048000 chr4A 712764041 712765501 1460 False 859.500000 1321 88.541000 81 1506 2 chr4A.!!$F3 1425
9 TraesCS7A01G048000 chr7D 21484165 21486201 2036 True 874.500000 1890 92.579333 149 2696 3 chr7D.!!$R1 2547
10 TraesCS7A01G048000 chr7D 21118688 21123450 4762 False 711.875000 1890 91.524500 149 2696 4 chr7D.!!$F1 2547
11 TraesCS7A01G048000 chr7D 21851367 21852465 1098 True 406.000000 573 82.145500 1234 2360 2 chr7D.!!$R2 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 3390 0.108567 GGAGACAAAGACGGAGAGGC 60.109 60.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 5344 0.030235 GTCCAAACAACACGGGAAGC 59.97 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
74 75 1.271217 ACCGACAGGGCCTTTTTCTAC 60.271 52.381 1.32 0.00 43.47 2.59
327 2910 5.398603 AACACGGGCATGATTTTATTTGA 57.601 34.783 0.00 0.00 0.00 2.69
703 3387 2.588464 AGAGGAGACAAAGACGGAGA 57.412 50.000 0.00 0.00 0.00 3.71
706 3390 0.108567 GGAGACAAAGACGGAGAGGC 60.109 60.000 0.00 0.00 0.00 4.70
707 3391 0.603569 GAGACAAAGACGGAGAGGCA 59.396 55.000 0.00 0.00 0.00 4.75
708 3392 0.605589 AGACAAAGACGGAGAGGCAG 59.394 55.000 0.00 0.00 0.00 4.85
709 3393 0.390472 GACAAAGACGGAGAGGCAGG 60.390 60.000 0.00 0.00 0.00 4.85
710 3394 1.078848 CAAAGACGGAGAGGCAGGG 60.079 63.158 0.00 0.00 0.00 4.45
711 3395 2.294078 AAAGACGGAGAGGCAGGGG 61.294 63.158 0.00 0.00 0.00 4.79
767 3480 3.580100 GACTGAGCTGCGCTGGTGA 62.580 63.158 23.95 14.65 39.88 4.02
960 3686 3.442076 ACCTCGAAACCCAAGATCTACT 58.558 45.455 0.00 0.00 0.00 2.57
1068 3798 1.078497 TGCTGCCAATTCGACGGAT 60.078 52.632 0.00 0.00 0.00 4.18
1283 4097 4.284490 AGCCGAGATTAGGAGCATAATTGA 59.716 41.667 0.00 0.00 0.00 2.57
1620 4434 3.008049 GGGATGCAGACGGTTATATTCCT 59.992 47.826 0.00 0.00 0.00 3.36
1698 4512 9.880064 GAAGTTGTGTTTCTTAAAGATTAGTCC 57.120 33.333 0.00 0.00 0.00 3.85
1875 4707 5.471456 CCCATCTCCTGCTATGTTATGTTTC 59.529 44.000 0.00 0.00 0.00 2.78
1911 4772 6.889301 ATCATTTACAATCCTGCTATGTGG 57.111 37.500 0.00 0.00 0.00 4.17
1994 4856 4.202472 CCAAAACAGTACCTTCCTTCCTCT 60.202 45.833 0.00 0.00 0.00 3.69
2026 4890 9.787435 AGTAGTATTTCTAGTATCTCTGTCTGG 57.213 37.037 0.00 0.00 31.22 3.86
2027 4891 9.563748 GTAGTATTTCTAGTATCTCTGTCTGGT 57.436 37.037 0.00 0.00 0.00 4.00
2312 5211 0.035036 CCATCTCGCCATCTCTGCAT 59.965 55.000 0.00 0.00 0.00 3.96
2319 5218 0.608582 GCCATCTCTGCATCATCCCC 60.609 60.000 0.00 0.00 0.00 4.81
2356 5255 5.067413 TCTCCTGGCTCTTATACAGTTTACG 59.933 44.000 0.00 0.00 0.00 3.18
2357 5256 3.802685 CCTGGCTCTTATACAGTTTACGC 59.197 47.826 0.00 0.00 0.00 4.42
2359 5258 5.080969 TGGCTCTTATACAGTTTACGCTT 57.919 39.130 0.00 0.00 0.00 4.68
2360 5259 5.107133 TGGCTCTTATACAGTTTACGCTTC 58.893 41.667 0.00 0.00 0.00 3.86
2361 5260 4.507021 GGCTCTTATACAGTTTACGCTTCC 59.493 45.833 0.00 0.00 0.00 3.46
2362 5261 5.349809 GCTCTTATACAGTTTACGCTTCCT 58.650 41.667 0.00 0.00 0.00 3.36
2363 5262 5.232414 GCTCTTATACAGTTTACGCTTCCTG 59.768 44.000 0.00 0.00 0.00 3.86
2364 5263 5.107133 TCTTATACAGTTTACGCTTCCTGC 58.893 41.667 0.00 0.00 38.57 4.85
2365 5264 2.088950 TACAGTTTACGCTTCCTGCC 57.911 50.000 0.00 0.00 38.78 4.85
2366 5265 0.396811 ACAGTTTACGCTTCCTGCCT 59.603 50.000 0.00 0.00 38.78 4.75
2367 5266 1.202770 ACAGTTTACGCTTCCTGCCTT 60.203 47.619 0.00 0.00 38.78 4.35
2368 5267 1.197721 CAGTTTACGCTTCCTGCCTTG 59.802 52.381 0.00 0.00 38.78 3.61
2369 5268 0.109735 GTTTACGCTTCCTGCCTTGC 60.110 55.000 0.00 0.00 38.78 4.01
2370 5269 0.250727 TTTACGCTTCCTGCCTTGCT 60.251 50.000 0.00 0.00 38.78 3.91
2371 5270 0.673644 TTACGCTTCCTGCCTTGCTC 60.674 55.000 0.00 0.00 38.78 4.26
2372 5271 1.544825 TACGCTTCCTGCCTTGCTCT 61.545 55.000 0.00 0.00 38.78 4.09
2373 5272 1.219124 CGCTTCCTGCCTTGCTCTA 59.781 57.895 0.00 0.00 38.78 2.43
2374 5273 0.391661 CGCTTCCTGCCTTGCTCTAA 60.392 55.000 0.00 0.00 38.78 2.10
2375 5274 1.377536 GCTTCCTGCCTTGCTCTAAG 58.622 55.000 0.00 0.00 36.11 2.18
2376 5275 1.065854 GCTTCCTGCCTTGCTCTAAGA 60.066 52.381 0.00 0.00 38.76 2.10
2377 5276 2.626840 CTTCCTGCCTTGCTCTAAGAC 58.373 52.381 0.00 0.00 38.76 3.01
2378 5277 1.944177 TCCTGCCTTGCTCTAAGACT 58.056 50.000 0.00 0.00 38.76 3.24
2379 5278 1.552337 TCCTGCCTTGCTCTAAGACTG 59.448 52.381 0.00 0.00 38.76 3.51
2380 5279 1.277557 CCTGCCTTGCTCTAAGACTGT 59.722 52.381 0.00 0.00 38.76 3.55
2381 5280 2.289945 CCTGCCTTGCTCTAAGACTGTT 60.290 50.000 0.00 0.00 38.76 3.16
2382 5281 2.740981 CTGCCTTGCTCTAAGACTGTTG 59.259 50.000 0.00 0.00 38.76 3.33
2383 5282 2.079925 GCCTTGCTCTAAGACTGTTGG 58.920 52.381 0.00 0.00 38.76 3.77
2384 5283 2.289694 GCCTTGCTCTAAGACTGTTGGA 60.290 50.000 0.00 0.00 38.76 3.53
2385 5284 3.620966 GCCTTGCTCTAAGACTGTTGGAT 60.621 47.826 0.00 0.00 38.76 3.41
2386 5285 4.583871 CCTTGCTCTAAGACTGTTGGATT 58.416 43.478 0.00 0.00 38.76 3.01
2387 5286 5.006386 CCTTGCTCTAAGACTGTTGGATTT 58.994 41.667 0.00 0.00 38.76 2.17
2388 5287 5.123027 CCTTGCTCTAAGACTGTTGGATTTC 59.877 44.000 0.00 0.00 38.76 2.17
2389 5288 4.579869 TGCTCTAAGACTGTTGGATTTCC 58.420 43.478 0.00 0.00 0.00 3.13
2390 5289 4.041567 TGCTCTAAGACTGTTGGATTTCCA 59.958 41.667 0.00 0.00 45.94 3.53
2391 5290 9.166234 CTTGCTCTAAGACTGTTGGATTTCCAC 62.166 44.444 0.00 0.00 41.49 4.02
2399 5298 3.948735 TGGATTTCCACTCGGTTCC 57.051 52.632 0.00 0.00 42.01 3.62
2400 5299 1.358152 TGGATTTCCACTCGGTTCCT 58.642 50.000 0.00 0.00 42.01 3.36
2401 5300 1.702957 TGGATTTCCACTCGGTTCCTT 59.297 47.619 0.00 0.00 42.01 3.36
2402 5301 2.290071 TGGATTTCCACTCGGTTCCTTC 60.290 50.000 0.00 0.00 42.01 3.46
2403 5302 2.357075 GATTTCCACTCGGTTCCTTCC 58.643 52.381 0.00 0.00 0.00 3.46
2404 5303 1.430992 TTTCCACTCGGTTCCTTCCT 58.569 50.000 0.00 0.00 0.00 3.36
2405 5304 1.430992 TTCCACTCGGTTCCTTCCTT 58.569 50.000 0.00 0.00 0.00 3.36
2406 5305 2.314071 TCCACTCGGTTCCTTCCTTA 57.686 50.000 0.00 0.00 0.00 2.69
2407 5306 1.897802 TCCACTCGGTTCCTTCCTTAC 59.102 52.381 0.00 0.00 0.00 2.34
2408 5307 1.621814 CCACTCGGTTCCTTCCTTACA 59.378 52.381 0.00 0.00 0.00 2.41
2409 5308 2.038033 CCACTCGGTTCCTTCCTTACAA 59.962 50.000 0.00 0.00 0.00 2.41
2410 5309 3.326747 CACTCGGTTCCTTCCTTACAAG 58.673 50.000 0.00 0.00 0.00 3.16
2411 5310 2.289506 ACTCGGTTCCTTCCTTACAAGC 60.290 50.000 0.00 0.00 0.00 4.01
2412 5311 1.002773 TCGGTTCCTTCCTTACAAGCC 59.997 52.381 0.00 0.00 0.00 4.35
2413 5312 1.271163 CGGTTCCTTCCTTACAAGCCA 60.271 52.381 0.00 0.00 0.00 4.75
2414 5313 2.618045 CGGTTCCTTCCTTACAAGCCAT 60.618 50.000 0.00 0.00 0.00 4.40
2415 5314 2.755103 GGTTCCTTCCTTACAAGCCATG 59.245 50.000 0.00 0.00 0.00 3.66
2416 5315 3.561313 GGTTCCTTCCTTACAAGCCATGA 60.561 47.826 0.00 0.00 0.00 3.07
2417 5316 4.273318 GTTCCTTCCTTACAAGCCATGAT 58.727 43.478 0.00 0.00 0.00 2.45
2418 5317 4.591321 TCCTTCCTTACAAGCCATGATT 57.409 40.909 0.00 0.00 0.00 2.57
2419 5318 4.526970 TCCTTCCTTACAAGCCATGATTC 58.473 43.478 0.00 0.00 0.00 2.52
2420 5319 4.018506 TCCTTCCTTACAAGCCATGATTCA 60.019 41.667 0.00 0.00 0.00 2.57
2421 5320 4.706476 CCTTCCTTACAAGCCATGATTCAA 59.294 41.667 0.00 0.00 0.00 2.69
2422 5321 5.393461 CCTTCCTTACAAGCCATGATTCAAC 60.393 44.000 0.00 0.00 0.00 3.18
2423 5322 4.922206 TCCTTACAAGCCATGATTCAACT 58.078 39.130 0.00 0.00 0.00 3.16
2424 5323 6.061022 TCCTTACAAGCCATGATTCAACTA 57.939 37.500 0.00 0.00 0.00 2.24
2425 5324 6.115446 TCCTTACAAGCCATGATTCAACTAG 58.885 40.000 0.00 0.00 0.00 2.57
2426 5325 6.070251 TCCTTACAAGCCATGATTCAACTAGA 60.070 38.462 0.00 0.00 0.00 2.43
2427 5326 6.037610 CCTTACAAGCCATGATTCAACTAGAC 59.962 42.308 0.00 0.00 0.00 2.59
2428 5327 4.265073 ACAAGCCATGATTCAACTAGACC 58.735 43.478 0.00 0.00 0.00 3.85
2429 5328 4.018960 ACAAGCCATGATTCAACTAGACCT 60.019 41.667 0.00 0.00 0.00 3.85
2430 5329 4.851639 AGCCATGATTCAACTAGACCTT 57.148 40.909 0.00 0.00 0.00 3.50
2431 5330 5.184892 AGCCATGATTCAACTAGACCTTT 57.815 39.130 0.00 0.00 0.00 3.11
2432 5331 5.574188 AGCCATGATTCAACTAGACCTTTT 58.426 37.500 0.00 0.00 0.00 2.27
2433 5332 6.012745 AGCCATGATTCAACTAGACCTTTTT 58.987 36.000 0.00 0.00 0.00 1.94
2434 5333 6.151817 AGCCATGATTCAACTAGACCTTTTTC 59.848 38.462 0.00 0.00 0.00 2.29
2435 5334 6.071952 GCCATGATTCAACTAGACCTTTTTCA 60.072 38.462 0.00 0.00 0.00 2.69
2436 5335 7.308435 CCATGATTCAACTAGACCTTTTTCAC 58.692 38.462 0.00 0.00 0.00 3.18
2437 5336 6.877611 TGATTCAACTAGACCTTTTTCACC 57.122 37.500 0.00 0.00 0.00 4.02
2438 5337 6.361433 TGATTCAACTAGACCTTTTTCACCA 58.639 36.000 0.00 0.00 0.00 4.17
2439 5338 6.262273 TGATTCAACTAGACCTTTTTCACCAC 59.738 38.462 0.00 0.00 0.00 4.16
2440 5339 5.367945 TCAACTAGACCTTTTTCACCACT 57.632 39.130 0.00 0.00 0.00 4.00
2441 5340 5.751586 TCAACTAGACCTTTTTCACCACTT 58.248 37.500 0.00 0.00 0.00 3.16
2442 5341 5.820947 TCAACTAGACCTTTTTCACCACTTC 59.179 40.000 0.00 0.00 0.00 3.01
2443 5342 5.632034 ACTAGACCTTTTTCACCACTTCT 57.368 39.130 0.00 0.00 0.00 2.85
2444 5343 6.002653 ACTAGACCTTTTTCACCACTTCTT 57.997 37.500 0.00 0.00 0.00 2.52
2445 5344 5.823045 ACTAGACCTTTTTCACCACTTCTTG 59.177 40.000 0.00 0.00 0.00 3.02
2446 5345 3.381590 AGACCTTTTTCACCACTTCTTGC 59.618 43.478 0.00 0.00 0.00 4.01
2447 5346 3.365472 ACCTTTTTCACCACTTCTTGCT 58.635 40.909 0.00 0.00 0.00 3.91
2448 5347 3.769300 ACCTTTTTCACCACTTCTTGCTT 59.231 39.130 0.00 0.00 0.00 3.91
2449 5348 4.142160 ACCTTTTTCACCACTTCTTGCTTC 60.142 41.667 0.00 0.00 0.00 3.86
2450 5349 4.363138 CTTTTTCACCACTTCTTGCTTCC 58.637 43.478 0.00 0.00 0.00 3.46
2451 5350 1.981256 TTCACCACTTCTTGCTTCCC 58.019 50.000 0.00 0.00 0.00 3.97
2452 5351 0.250295 TCACCACTTCTTGCTTCCCG 60.250 55.000 0.00 0.00 0.00 5.14
2453 5352 0.535102 CACCACTTCTTGCTTCCCGT 60.535 55.000 0.00 0.00 0.00 5.28
2454 5353 0.535102 ACCACTTCTTGCTTCCCGTG 60.535 55.000 0.00 0.00 0.00 4.94
2455 5354 0.535102 CCACTTCTTGCTTCCCGTGT 60.535 55.000 0.00 0.00 0.00 4.49
2456 5355 1.308998 CACTTCTTGCTTCCCGTGTT 58.691 50.000 0.00 0.00 0.00 3.32
2457 5356 1.002468 CACTTCTTGCTTCCCGTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
2458 5357 1.308998 CTTCTTGCTTCCCGTGTTGT 58.691 50.000 0.00 0.00 0.00 3.32
2459 5358 1.676006 CTTCTTGCTTCCCGTGTTGTT 59.324 47.619 0.00 0.00 0.00 2.83
2460 5359 1.757682 TCTTGCTTCCCGTGTTGTTT 58.242 45.000 0.00 0.00 0.00 2.83
2461 5360 1.403679 TCTTGCTTCCCGTGTTGTTTG 59.596 47.619 0.00 0.00 0.00 2.93
2462 5361 0.457851 TTGCTTCCCGTGTTGTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
2463 5362 0.394488 TGCTTCCCGTGTTGTTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
2464 5363 0.030235 GCTTCCCGTGTTGTTTGGAC 59.970 55.000 0.00 0.00 0.00 4.02
2465 5364 1.384525 CTTCCCGTGTTGTTTGGACA 58.615 50.000 0.00 0.00 0.00 4.02
2466 5365 1.333619 CTTCCCGTGTTGTTTGGACAG 59.666 52.381 0.00 0.00 37.04 3.51
2467 5366 0.253610 TCCCGTGTTGTTTGGACAGT 59.746 50.000 0.00 0.00 37.04 3.55
2468 5367 0.661020 CCCGTGTTGTTTGGACAGTC 59.339 55.000 0.00 0.00 37.04 3.51
2469 5368 1.374560 CCGTGTTGTTTGGACAGTCA 58.625 50.000 2.17 0.00 37.04 3.41
2470 5369 1.946768 CCGTGTTGTTTGGACAGTCAT 59.053 47.619 2.17 0.00 37.04 3.06
2471 5370 2.357637 CCGTGTTGTTTGGACAGTCATT 59.642 45.455 2.17 0.00 37.04 2.57
2472 5371 3.562141 CCGTGTTGTTTGGACAGTCATTA 59.438 43.478 2.17 0.00 37.04 1.90
2473 5372 4.215399 CCGTGTTGTTTGGACAGTCATTAT 59.785 41.667 2.17 0.00 37.04 1.28
2474 5373 5.146460 CGTGTTGTTTGGACAGTCATTATG 58.854 41.667 2.17 0.00 37.04 1.90
2475 5374 5.277779 CGTGTTGTTTGGACAGTCATTATGT 60.278 40.000 2.17 0.00 37.04 2.29
2476 5375 6.503524 GTGTTGTTTGGACAGTCATTATGTT 58.496 36.000 2.17 0.00 37.04 2.71
2477 5376 6.636850 GTGTTGTTTGGACAGTCATTATGTTC 59.363 38.462 2.17 0.00 37.04 3.18
2478 5377 6.545666 TGTTGTTTGGACAGTCATTATGTTCT 59.454 34.615 2.17 0.00 37.04 3.01
2479 5378 7.717436 TGTTGTTTGGACAGTCATTATGTTCTA 59.283 33.333 2.17 0.00 37.04 2.10
2480 5379 8.730680 GTTGTTTGGACAGTCATTATGTTCTAT 58.269 33.333 2.17 0.00 37.04 1.98
2481 5380 8.492673 TGTTTGGACAGTCATTATGTTCTATC 57.507 34.615 2.17 0.00 0.00 2.08
2482 5381 8.321353 TGTTTGGACAGTCATTATGTTCTATCT 58.679 33.333 2.17 0.00 0.00 1.98
2483 5382 8.821894 GTTTGGACAGTCATTATGTTCTATCTC 58.178 37.037 2.17 0.00 0.00 2.75
2484 5383 6.739112 TGGACAGTCATTATGTTCTATCTCG 58.261 40.000 2.17 0.00 0.00 4.04
2485 5384 6.321435 TGGACAGTCATTATGTTCTATCTCGT 59.679 38.462 2.17 0.00 0.00 4.18
2486 5385 6.858993 GGACAGTCATTATGTTCTATCTCGTC 59.141 42.308 2.17 0.00 0.00 4.20
2487 5386 7.255312 GGACAGTCATTATGTTCTATCTCGTCT 60.255 40.741 2.17 0.00 0.00 4.18
2488 5387 8.001881 ACAGTCATTATGTTCTATCTCGTCTT 57.998 34.615 0.00 0.00 0.00 3.01
2489 5388 7.918033 ACAGTCATTATGTTCTATCTCGTCTTG 59.082 37.037 0.00 0.00 0.00 3.02
2490 5389 7.380870 CAGTCATTATGTTCTATCTCGTCTTGG 59.619 40.741 0.00 0.00 0.00 3.61
2491 5390 7.285629 AGTCATTATGTTCTATCTCGTCTTGGA 59.714 37.037 0.00 0.00 0.00 3.53
2492 5391 7.921214 GTCATTATGTTCTATCTCGTCTTGGAA 59.079 37.037 0.00 0.00 0.00 3.53
2493 5392 8.138074 TCATTATGTTCTATCTCGTCTTGGAAG 58.862 37.037 0.00 0.00 0.00 3.46
2494 5393 5.923733 ATGTTCTATCTCGTCTTGGAAGT 57.076 39.130 0.00 0.00 0.00 3.01
2495 5394 5.723672 TGTTCTATCTCGTCTTGGAAGTT 57.276 39.130 0.00 0.00 0.00 2.66
2496 5395 5.470368 TGTTCTATCTCGTCTTGGAAGTTG 58.530 41.667 0.00 0.00 0.00 3.16
2497 5396 5.010719 TGTTCTATCTCGTCTTGGAAGTTGT 59.989 40.000 0.00 0.00 0.00 3.32
2498 5397 6.208007 TGTTCTATCTCGTCTTGGAAGTTGTA 59.792 38.462 0.00 0.00 0.00 2.41
2499 5398 6.438259 TCTATCTCGTCTTGGAAGTTGTAG 57.562 41.667 0.00 0.00 0.00 2.74
2500 5399 6.178324 TCTATCTCGTCTTGGAAGTTGTAGA 58.822 40.000 0.00 0.00 0.00 2.59
2501 5400 5.923733 ATCTCGTCTTGGAAGTTGTAGAT 57.076 39.130 0.00 0.00 0.00 1.98
2502 5401 5.723672 TCTCGTCTTGGAAGTTGTAGATT 57.276 39.130 0.00 0.00 0.00 2.40
2503 5402 6.097915 TCTCGTCTTGGAAGTTGTAGATTT 57.902 37.500 0.00 0.00 0.00 2.17
2504 5403 6.522054 TCTCGTCTTGGAAGTTGTAGATTTT 58.478 36.000 0.00 0.00 0.00 1.82
2505 5404 6.645415 TCTCGTCTTGGAAGTTGTAGATTTTC 59.355 38.462 0.00 0.00 0.00 2.29
2506 5405 6.522054 TCGTCTTGGAAGTTGTAGATTTTCT 58.478 36.000 0.00 0.00 0.00 2.52
2507 5406 6.990349 TCGTCTTGGAAGTTGTAGATTTTCTT 59.010 34.615 0.00 0.00 0.00 2.52
2508 5407 7.170998 TCGTCTTGGAAGTTGTAGATTTTCTTC 59.829 37.037 0.00 0.00 35.29 2.87
2509 5408 7.171678 CGTCTTGGAAGTTGTAGATTTTCTTCT 59.828 37.037 0.00 0.00 36.02 2.85
2510 5409 8.841300 GTCTTGGAAGTTGTAGATTTTCTTCTT 58.159 33.333 0.00 0.00 36.02 2.52
2511 5410 9.057089 TCTTGGAAGTTGTAGATTTTCTTCTTC 57.943 33.333 0.00 0.00 36.02 2.87
2512 5411 8.980481 TTGGAAGTTGTAGATTTTCTTCTTCT 57.020 30.769 0.00 0.00 36.02 2.85
2513 5412 8.980481 TGGAAGTTGTAGATTTTCTTCTTCTT 57.020 30.769 0.00 0.00 36.02 2.52
2514 5413 9.408648 TGGAAGTTGTAGATTTTCTTCTTCTTT 57.591 29.630 0.00 0.00 36.02 2.52
2532 5431 9.750125 TTCTTCTTTTCTTCTTTAATCTTTGGC 57.250 29.630 0.00 0.00 0.00 4.52
2533 5432 8.360390 TCTTCTTTTCTTCTTTAATCTTTGGCC 58.640 33.333 0.00 0.00 0.00 5.36
2534 5433 6.993079 TCTTTTCTTCTTTAATCTTTGGCCC 58.007 36.000 0.00 0.00 0.00 5.80
2535 5434 5.738619 TTTCTTCTTTAATCTTTGGCCCC 57.261 39.130 0.00 0.00 0.00 5.80
2536 5435 3.352648 TCTTCTTTAATCTTTGGCCCCG 58.647 45.455 0.00 0.00 0.00 5.73
2537 5436 1.470051 TCTTTAATCTTTGGCCCCGC 58.530 50.000 0.00 0.00 0.00 6.13
2538 5437 1.005450 TCTTTAATCTTTGGCCCCGCT 59.995 47.619 0.00 0.00 0.00 5.52
2539 5438 1.134946 CTTTAATCTTTGGCCCCGCTG 59.865 52.381 0.00 0.00 0.00 5.18
2540 5439 0.682855 TTAATCTTTGGCCCCGCTGG 60.683 55.000 0.00 0.00 37.09 4.85
2549 5448 2.750237 CCCCGCTGGCCAAAGTAC 60.750 66.667 7.01 0.00 0.00 2.73
2550 5449 2.033448 CCCGCTGGCCAAAGTACA 59.967 61.111 7.01 0.00 0.00 2.90
2551 5450 1.602323 CCCGCTGGCCAAAGTACAA 60.602 57.895 7.01 0.00 0.00 2.41
2552 5451 0.965363 CCCGCTGGCCAAAGTACAAT 60.965 55.000 7.01 0.00 0.00 2.71
2553 5452 0.451783 CCGCTGGCCAAAGTACAATC 59.548 55.000 7.01 0.00 0.00 2.67
2554 5453 1.453155 CGCTGGCCAAAGTACAATCT 58.547 50.000 7.01 0.00 0.00 2.40
2555 5454 1.812571 CGCTGGCCAAAGTACAATCTT 59.187 47.619 7.01 0.00 0.00 2.40
2556 5455 2.228822 CGCTGGCCAAAGTACAATCTTT 59.771 45.455 7.01 0.00 38.04 2.52
2557 5456 3.305335 CGCTGGCCAAAGTACAATCTTTT 60.305 43.478 7.01 0.00 35.77 2.27
2558 5457 3.989817 GCTGGCCAAAGTACAATCTTTTG 59.010 43.478 7.01 0.00 35.77 2.44
2559 5458 3.988819 TGGCCAAAGTACAATCTTTTGC 58.011 40.909 0.61 6.67 41.89 3.68
2560 5459 3.640967 TGGCCAAAGTACAATCTTTTGCT 59.359 39.130 0.61 0.00 42.11 3.91
2561 5460 4.830046 TGGCCAAAGTACAATCTTTTGCTA 59.170 37.500 0.61 6.31 42.11 3.49
2562 5461 5.480073 TGGCCAAAGTACAATCTTTTGCTAT 59.520 36.000 0.61 0.00 42.11 2.97
2563 5462 6.036470 GGCCAAAGTACAATCTTTTGCTATC 58.964 40.000 0.00 0.00 42.11 2.08
2564 5463 6.350110 GGCCAAAGTACAATCTTTTGCTATCA 60.350 38.462 0.00 0.00 42.11 2.15
2565 5464 7.090173 GCCAAAGTACAATCTTTTGCTATCAA 58.910 34.615 0.00 0.00 40.51 2.57
2566 5465 7.274250 GCCAAAGTACAATCTTTTGCTATCAAG 59.726 37.037 0.00 0.00 40.51 3.02
2567 5466 8.299570 CCAAAGTACAATCTTTTGCTATCAAGT 58.700 33.333 0.00 0.00 35.77 3.16
2568 5467 9.683069 CAAAGTACAATCTTTTGCTATCAAGTT 57.317 29.630 0.00 0.00 35.77 2.66
2573 5472 8.369218 ACAATCTTTTGCTATCAAGTTTTTGG 57.631 30.769 0.00 0.00 36.22 3.28
2574 5473 7.986889 ACAATCTTTTGCTATCAAGTTTTTGGT 59.013 29.630 0.00 0.00 36.22 3.67
2575 5474 8.829612 CAATCTTTTGCTATCAAGTTTTTGGTT 58.170 29.630 0.00 0.00 34.97 3.67
2576 5475 7.769272 TCTTTTGCTATCAAGTTTTTGGTTG 57.231 32.000 0.00 0.00 34.97 3.77
2577 5476 6.760770 TCTTTTGCTATCAAGTTTTTGGTTGG 59.239 34.615 0.00 0.00 34.97 3.77
2578 5477 5.860941 TTGCTATCAAGTTTTTGGTTGGA 57.139 34.783 0.00 0.00 34.97 3.53
2579 5478 5.452078 TGCTATCAAGTTTTTGGTTGGAG 57.548 39.130 0.00 0.00 34.97 3.86
2580 5479 4.892934 TGCTATCAAGTTTTTGGTTGGAGT 59.107 37.500 0.00 0.00 34.97 3.85
2581 5480 5.221224 TGCTATCAAGTTTTTGGTTGGAGTG 60.221 40.000 0.00 0.00 34.97 3.51
2582 5481 4.670896 ATCAAGTTTTTGGTTGGAGTGG 57.329 40.909 0.00 0.00 34.97 4.00
2583 5482 2.167487 TCAAGTTTTTGGTTGGAGTGGC 59.833 45.455 0.00 0.00 34.97 5.01
2584 5483 1.119684 AGTTTTTGGTTGGAGTGGCC 58.880 50.000 0.00 0.00 37.10 5.36
2585 5484 1.119684 GTTTTTGGTTGGAGTGGCCT 58.880 50.000 3.32 0.00 37.63 5.19
2586 5485 2.091555 AGTTTTTGGTTGGAGTGGCCTA 60.092 45.455 3.32 0.00 37.63 3.93
2587 5486 2.897326 GTTTTTGGTTGGAGTGGCCTAT 59.103 45.455 3.32 0.00 37.63 2.57
2588 5487 2.990740 TTTGGTTGGAGTGGCCTATT 57.009 45.000 3.32 0.00 37.63 1.73
2589 5488 2.990740 TTGGTTGGAGTGGCCTATTT 57.009 45.000 3.32 0.00 37.63 1.40
2590 5489 2.214376 TGGTTGGAGTGGCCTATTTG 57.786 50.000 3.32 0.00 37.63 2.32
2591 5490 0.817654 GGTTGGAGTGGCCTATTTGC 59.182 55.000 3.32 0.00 37.63 3.68
2605 5504 6.712241 GCCTATTTGCCTTTTTCTTTCTTC 57.288 37.500 0.00 0.00 0.00 2.87
2606 5505 6.459066 GCCTATTTGCCTTTTTCTTTCTTCT 58.541 36.000 0.00 0.00 0.00 2.85
2607 5506 6.931281 GCCTATTTGCCTTTTTCTTTCTTCTT 59.069 34.615 0.00 0.00 0.00 2.52
2608 5507 7.116948 GCCTATTTGCCTTTTTCTTTCTTCTTC 59.883 37.037 0.00 0.00 0.00 2.87
2609 5508 8.363390 CCTATTTGCCTTTTTCTTTCTTCTTCT 58.637 33.333 0.00 0.00 0.00 2.85
2610 5509 9.755804 CTATTTGCCTTTTTCTTTCTTCTTCTT 57.244 29.630 0.00 0.00 0.00 2.52
2612 5511 8.846943 TTTGCCTTTTTCTTTCTTCTTCTTTT 57.153 26.923 0.00 0.00 0.00 2.27
2613 5512 7.832503 TGCCTTTTTCTTTCTTCTTCTTTTG 57.167 32.000 0.00 0.00 0.00 2.44
2614 5513 7.610865 TGCCTTTTTCTTTCTTCTTCTTTTGA 58.389 30.769 0.00 0.00 0.00 2.69
2615 5514 8.093927 TGCCTTTTTCTTTCTTCTTCTTTTGAA 58.906 29.630 0.00 0.00 36.89 2.69
2616 5515 8.935844 GCCTTTTTCTTTCTTCTTCTTTTGAAA 58.064 29.630 0.00 0.00 38.07 2.69
2622 5521 7.762382 TCTTTCTTCTTCTTTTGAAAGACACC 58.238 34.615 11.45 0.00 45.06 4.16
2623 5522 7.611855 TCTTTCTTCTTCTTTTGAAAGACACCT 59.388 33.333 11.45 0.00 45.06 4.00
2624 5523 8.801882 TTTCTTCTTCTTTTGAAAGACACCTA 57.198 30.769 5.71 0.00 44.18 3.08
2625 5524 8.438676 TTCTTCTTCTTTTGAAAGACACCTAG 57.561 34.615 5.71 1.64 44.18 3.02
2626 5525 7.565680 TCTTCTTCTTTTGAAAGACACCTAGT 58.434 34.615 5.71 0.00 44.18 2.57
2627 5526 8.047310 TCTTCTTCTTTTGAAAGACACCTAGTT 58.953 33.333 5.71 0.00 44.18 2.24
2628 5527 7.553881 TCTTCTTTTGAAAGACACCTAGTTG 57.446 36.000 5.71 0.00 44.18 3.16
2629 5528 7.110155 TCTTCTTTTGAAAGACACCTAGTTGT 58.890 34.615 5.71 0.00 44.18 3.32
2630 5529 6.677781 TCTTTTGAAAGACACCTAGTTGTG 57.322 37.500 0.00 0.00 39.95 3.33
2631 5530 5.588648 TCTTTTGAAAGACACCTAGTTGTGG 59.411 40.000 0.00 0.00 39.95 4.17
2632 5531 4.497291 TTGAAAGACACCTAGTTGTGGT 57.503 40.909 0.00 0.00 40.62 4.16
2633 5532 4.497291 TGAAAGACACCTAGTTGTGGTT 57.503 40.909 0.00 0.00 40.62 3.67
2634 5533 4.850680 TGAAAGACACCTAGTTGTGGTTT 58.149 39.130 0.00 0.00 40.62 3.27
2635 5534 5.258051 TGAAAGACACCTAGTTGTGGTTTT 58.742 37.500 0.00 1.00 40.62 2.43
2636 5535 5.712917 TGAAAGACACCTAGTTGTGGTTTTT 59.287 36.000 0.00 0.00 40.62 1.94
2637 5536 6.885376 TGAAAGACACCTAGTTGTGGTTTTTA 59.115 34.615 0.00 0.00 40.62 1.52
2638 5537 6.688637 AAGACACCTAGTTGTGGTTTTTAC 57.311 37.500 0.00 0.00 40.62 2.01
2639 5538 5.128205 AGACACCTAGTTGTGGTTTTTACC 58.872 41.667 0.00 0.00 40.62 2.85
2640 5539 4.209538 ACACCTAGTTGTGGTTTTTACCC 58.790 43.478 0.00 0.00 40.62 3.69
2681 5580 4.128643 CTGGGTGTCAATGTTTGCAATTT 58.871 39.130 0.00 0.00 0.00 1.82
2682 5581 4.521146 TGGGTGTCAATGTTTGCAATTTT 58.479 34.783 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.599343 TGCTGCCTTTGTATCACACTAG 58.401 45.455 0.00 0.00 0.00 2.57
256 2835 1.807142 GGGCGCTAGGATTTTAGATGC 59.193 52.381 7.64 0.00 0.00 3.91
767 3480 2.754658 ACTCGGCCGGAACTCGAT 60.755 61.111 27.83 0.00 42.43 3.59
960 3686 0.976641 ATGGTTCCTCTGCTGTCGAA 59.023 50.000 0.00 0.00 0.00 3.71
1119 3924 1.239968 ACTCGTCACCCTCCGTGTAC 61.240 60.000 0.00 0.00 43.51 2.90
1228 4042 1.106944 ACCTTGCCCTTGTTTGGACG 61.107 55.000 0.00 0.00 0.00 4.79
1283 4097 2.032681 GTTGCTCCGGCTTCAGGT 59.967 61.111 0.00 0.00 39.59 4.00
1457 4271 0.460459 GACCTCGAAGTAGCCCTTGC 60.460 60.000 0.00 0.00 32.03 4.01
1497 4311 4.019321 CCCAACTCATTGTCTCTTTCCCTA 60.019 45.833 0.00 0.00 33.60 3.53
1620 4434 4.581493 CGTCAGCTATCTTACGAACGTAA 58.419 43.478 16.76 16.76 41.14 3.18
1698 4512 0.788995 CGCTTGCACTCTGTCTTCAG 59.211 55.000 0.00 0.00 42.54 3.02
1822 4654 2.555199 AGATAGAACAAGCATGGACGC 58.445 47.619 0.00 0.00 0.00 5.19
1875 4707 5.794687 TGTAAATGATAAACTGGAGTGCG 57.205 39.130 0.00 0.00 0.00 5.34
1911 4772 1.510480 GAGTCACCCACAGCAGCAAC 61.510 60.000 0.00 0.00 0.00 4.17
1994 4856 9.409918 AGAGATACTAGAAATACTACTGCAACA 57.590 33.333 0.00 0.00 0.00 3.33
2028 4892 9.927668 CCATTCATTTTAGGTTGAATTGTTACT 57.072 29.630 0.00 0.00 39.84 2.24
2312 5211 0.861854 TGGGGTATACTCGGGGATGA 59.138 55.000 2.25 0.00 0.00 2.92
2319 5218 2.171840 CCAGGAGATGGGGTATACTCG 58.828 57.143 2.25 0.00 46.36 4.18
2356 5255 1.065854 TCTTAGAGCAAGGCAGGAAGC 60.066 52.381 0.00 0.00 44.65 3.86
2357 5256 2.235898 AGTCTTAGAGCAAGGCAGGAAG 59.764 50.000 0.00 0.00 41.63 3.46
2359 5258 1.552337 CAGTCTTAGAGCAAGGCAGGA 59.448 52.381 0.00 0.00 41.63 3.86
2360 5259 1.277557 ACAGTCTTAGAGCAAGGCAGG 59.722 52.381 0.00 0.00 41.63 4.85
2361 5260 2.740981 CAACAGTCTTAGAGCAAGGCAG 59.259 50.000 0.00 0.00 41.63 4.85
2362 5261 2.550855 CCAACAGTCTTAGAGCAAGGCA 60.551 50.000 0.00 0.00 41.63 4.75
2363 5262 2.079925 CCAACAGTCTTAGAGCAAGGC 58.920 52.381 0.00 0.00 39.30 4.35
2364 5263 3.685139 TCCAACAGTCTTAGAGCAAGG 57.315 47.619 0.00 0.00 34.76 3.61
2365 5264 5.123027 GGAAATCCAACAGTCTTAGAGCAAG 59.877 44.000 0.00 0.00 35.64 4.01
2366 5265 5.003804 GGAAATCCAACAGTCTTAGAGCAA 58.996 41.667 0.00 0.00 35.64 3.91
2367 5266 4.041567 TGGAAATCCAACAGTCTTAGAGCA 59.958 41.667 0.00 0.00 44.35 4.26
2368 5267 4.579869 TGGAAATCCAACAGTCTTAGAGC 58.420 43.478 0.00 0.00 44.35 4.09
2381 5280 1.358152 AGGAACCGAGTGGAAATCCA 58.642 50.000 0.00 0.00 45.30 3.41
2382 5281 2.357075 GAAGGAACCGAGTGGAAATCC 58.643 52.381 0.00 0.00 39.21 3.01
2383 5282 2.027100 AGGAAGGAACCGAGTGGAAATC 60.027 50.000 0.00 0.00 39.21 2.17
2384 5283 1.985895 AGGAAGGAACCGAGTGGAAAT 59.014 47.619 0.00 0.00 39.21 2.17
2385 5284 1.430992 AGGAAGGAACCGAGTGGAAA 58.569 50.000 0.00 0.00 39.21 3.13
2386 5285 1.430992 AAGGAAGGAACCGAGTGGAA 58.569 50.000 0.00 0.00 39.21 3.53
2387 5286 1.897802 GTAAGGAAGGAACCGAGTGGA 59.102 52.381 0.00 0.00 39.21 4.02
2388 5287 1.621814 TGTAAGGAAGGAACCGAGTGG 59.378 52.381 0.00 0.00 42.84 4.00
2389 5288 3.326747 CTTGTAAGGAAGGAACCGAGTG 58.673 50.000 0.00 0.00 34.73 3.51
2390 5289 2.289506 GCTTGTAAGGAAGGAACCGAGT 60.290 50.000 0.00 0.00 34.73 4.18
2391 5290 2.347731 GCTTGTAAGGAAGGAACCGAG 58.652 52.381 0.00 0.00 34.73 4.63
2392 5291 1.002773 GGCTTGTAAGGAAGGAACCGA 59.997 52.381 0.00 0.00 34.73 4.69
2393 5292 1.271163 TGGCTTGTAAGGAAGGAACCG 60.271 52.381 0.00 0.00 34.73 4.44
2394 5293 2.579410 TGGCTTGTAAGGAAGGAACC 57.421 50.000 0.00 0.00 0.00 3.62
2395 5294 3.686016 TCATGGCTTGTAAGGAAGGAAC 58.314 45.455 0.00 0.00 0.00 3.62
2396 5295 4.591321 ATCATGGCTTGTAAGGAAGGAA 57.409 40.909 0.00 0.00 0.00 3.36
2397 5296 4.018506 TGAATCATGGCTTGTAAGGAAGGA 60.019 41.667 0.00 0.00 0.00 3.36
2398 5297 4.272489 TGAATCATGGCTTGTAAGGAAGG 58.728 43.478 0.00 0.00 0.00 3.46
2399 5298 5.416952 AGTTGAATCATGGCTTGTAAGGAAG 59.583 40.000 0.00 0.00 0.00 3.46
2400 5299 5.324409 AGTTGAATCATGGCTTGTAAGGAA 58.676 37.500 0.00 0.00 0.00 3.36
2401 5300 4.922206 AGTTGAATCATGGCTTGTAAGGA 58.078 39.130 0.00 0.00 0.00 3.36
2402 5301 6.037610 GTCTAGTTGAATCATGGCTTGTAAGG 59.962 42.308 0.00 0.00 0.00 2.69
2403 5302 6.037610 GGTCTAGTTGAATCATGGCTTGTAAG 59.962 42.308 0.00 0.00 0.00 2.34
2404 5303 5.880332 GGTCTAGTTGAATCATGGCTTGTAA 59.120 40.000 0.00 0.00 0.00 2.41
2405 5304 5.189736 AGGTCTAGTTGAATCATGGCTTGTA 59.810 40.000 0.00 0.00 0.00 2.41
2406 5305 4.018960 AGGTCTAGTTGAATCATGGCTTGT 60.019 41.667 0.00 0.00 0.00 3.16
2407 5306 4.521146 AGGTCTAGTTGAATCATGGCTTG 58.479 43.478 0.00 0.00 0.00 4.01
2408 5307 4.851639 AGGTCTAGTTGAATCATGGCTT 57.148 40.909 0.00 0.00 0.00 4.35
2409 5308 4.851639 AAGGTCTAGTTGAATCATGGCT 57.148 40.909 0.00 0.00 0.00 4.75
2410 5309 5.904362 AAAAGGTCTAGTTGAATCATGGC 57.096 39.130 0.00 0.00 0.00 4.40
2411 5310 7.308435 GTGAAAAAGGTCTAGTTGAATCATGG 58.692 38.462 0.00 0.00 0.00 3.66
2412 5311 7.040478 TGGTGAAAAAGGTCTAGTTGAATCATG 60.040 37.037 0.00 0.00 0.00 3.07
2413 5312 7.004086 TGGTGAAAAAGGTCTAGTTGAATCAT 58.996 34.615 0.00 0.00 0.00 2.45
2414 5313 6.262273 GTGGTGAAAAAGGTCTAGTTGAATCA 59.738 38.462 0.00 0.00 0.00 2.57
2415 5314 6.486993 AGTGGTGAAAAAGGTCTAGTTGAATC 59.513 38.462 0.00 0.00 0.00 2.52
2416 5315 6.365520 AGTGGTGAAAAAGGTCTAGTTGAAT 58.634 36.000 0.00 0.00 0.00 2.57
2417 5316 5.751586 AGTGGTGAAAAAGGTCTAGTTGAA 58.248 37.500 0.00 0.00 0.00 2.69
2418 5317 5.367945 AGTGGTGAAAAAGGTCTAGTTGA 57.632 39.130 0.00 0.00 0.00 3.18
2419 5318 5.823045 AGAAGTGGTGAAAAAGGTCTAGTTG 59.177 40.000 0.00 0.00 0.00 3.16
2420 5319 6.002653 AGAAGTGGTGAAAAAGGTCTAGTT 57.997 37.500 0.00 0.00 0.00 2.24
2421 5320 5.632034 AGAAGTGGTGAAAAAGGTCTAGT 57.368 39.130 0.00 0.00 0.00 2.57
2422 5321 5.278022 GCAAGAAGTGGTGAAAAAGGTCTAG 60.278 44.000 0.00 0.00 0.00 2.43
2423 5322 4.578928 GCAAGAAGTGGTGAAAAAGGTCTA 59.421 41.667 0.00 0.00 0.00 2.59
2424 5323 3.381590 GCAAGAAGTGGTGAAAAAGGTCT 59.618 43.478 0.00 0.00 0.00 3.85
2425 5324 3.381590 AGCAAGAAGTGGTGAAAAAGGTC 59.618 43.478 0.00 0.00 36.32 3.85
2426 5325 3.365472 AGCAAGAAGTGGTGAAAAAGGT 58.635 40.909 0.00 0.00 36.32 3.50
2427 5326 4.363138 GAAGCAAGAAGTGGTGAAAAAGG 58.637 43.478 0.00 0.00 38.21 3.11
2428 5327 4.363138 GGAAGCAAGAAGTGGTGAAAAAG 58.637 43.478 0.00 0.00 38.21 2.27
2429 5328 3.132111 GGGAAGCAAGAAGTGGTGAAAAA 59.868 43.478 0.00 0.00 38.21 1.94
2430 5329 2.693074 GGGAAGCAAGAAGTGGTGAAAA 59.307 45.455 0.00 0.00 38.21 2.29
2431 5330 2.306847 GGGAAGCAAGAAGTGGTGAAA 58.693 47.619 0.00 0.00 38.21 2.69
2432 5331 1.813862 CGGGAAGCAAGAAGTGGTGAA 60.814 52.381 0.00 0.00 38.21 3.18
2433 5332 0.250295 CGGGAAGCAAGAAGTGGTGA 60.250 55.000 0.00 0.00 38.21 4.02
2434 5333 0.535102 ACGGGAAGCAAGAAGTGGTG 60.535 55.000 0.00 0.00 38.21 4.17
2435 5334 0.535102 CACGGGAAGCAAGAAGTGGT 60.535 55.000 0.00 0.00 40.58 4.16
2436 5335 0.535102 ACACGGGAAGCAAGAAGTGG 60.535 55.000 0.00 0.00 34.28 4.00
2437 5336 1.002468 CAACACGGGAAGCAAGAAGTG 60.002 52.381 0.00 0.00 35.89 3.16
2438 5337 1.308998 CAACACGGGAAGCAAGAAGT 58.691 50.000 0.00 0.00 0.00 3.01
2439 5338 1.308998 ACAACACGGGAAGCAAGAAG 58.691 50.000 0.00 0.00 0.00 2.85
2440 5339 1.757682 AACAACACGGGAAGCAAGAA 58.242 45.000 0.00 0.00 0.00 2.52
2441 5340 1.403679 CAAACAACACGGGAAGCAAGA 59.596 47.619 0.00 0.00 0.00 3.02
2442 5341 1.535860 CCAAACAACACGGGAAGCAAG 60.536 52.381 0.00 0.00 0.00 4.01
2443 5342 0.457851 CCAAACAACACGGGAAGCAA 59.542 50.000 0.00 0.00 0.00 3.91
2444 5343 0.394488 TCCAAACAACACGGGAAGCA 60.394 50.000 0.00 0.00 0.00 3.91
2445 5344 0.030235 GTCCAAACAACACGGGAAGC 59.970 55.000 0.00 0.00 0.00 3.86
2446 5345 1.333619 CTGTCCAAACAACACGGGAAG 59.666 52.381 0.00 0.00 34.24 3.46
2447 5346 1.340211 ACTGTCCAAACAACACGGGAA 60.340 47.619 0.00 0.00 34.24 3.97
2448 5347 0.253610 ACTGTCCAAACAACACGGGA 59.746 50.000 0.00 0.00 34.24 5.14
2449 5348 0.661020 GACTGTCCAAACAACACGGG 59.339 55.000 0.00 0.00 34.24 5.28
2450 5349 1.374560 TGACTGTCCAAACAACACGG 58.625 50.000 5.17 0.00 34.24 4.94
2451 5350 3.691049 AATGACTGTCCAAACAACACG 57.309 42.857 5.17 0.00 34.24 4.49
2452 5351 6.072112 ACATAATGACTGTCCAAACAACAC 57.928 37.500 5.17 0.00 34.24 3.32
2453 5352 6.545666 AGAACATAATGACTGTCCAAACAACA 59.454 34.615 5.17 0.00 34.24 3.33
2454 5353 6.970484 AGAACATAATGACTGTCCAAACAAC 58.030 36.000 5.17 0.00 34.24 3.32
2455 5354 8.862325 ATAGAACATAATGACTGTCCAAACAA 57.138 30.769 5.17 0.00 34.24 2.83
2456 5355 8.321353 AGATAGAACATAATGACTGTCCAAACA 58.679 33.333 5.17 0.00 0.00 2.83
2457 5356 8.723942 AGATAGAACATAATGACTGTCCAAAC 57.276 34.615 5.17 0.00 0.00 2.93
2458 5357 7.706607 CGAGATAGAACATAATGACTGTCCAAA 59.293 37.037 5.17 0.00 0.00 3.28
2459 5358 7.147897 ACGAGATAGAACATAATGACTGTCCAA 60.148 37.037 5.17 0.00 0.00 3.53
2460 5359 6.321435 ACGAGATAGAACATAATGACTGTCCA 59.679 38.462 5.17 0.00 0.00 4.02
2461 5360 6.740110 ACGAGATAGAACATAATGACTGTCC 58.260 40.000 5.17 0.00 0.00 4.02
2462 5361 7.644490 AGACGAGATAGAACATAATGACTGTC 58.356 38.462 0.00 0.00 0.00 3.51
2463 5362 7.575414 AGACGAGATAGAACATAATGACTGT 57.425 36.000 0.00 0.00 0.00 3.55
2464 5363 7.380870 CCAAGACGAGATAGAACATAATGACTG 59.619 40.741 0.00 0.00 0.00 3.51
2465 5364 7.285629 TCCAAGACGAGATAGAACATAATGACT 59.714 37.037 0.00 0.00 0.00 3.41
2466 5365 7.426410 TCCAAGACGAGATAGAACATAATGAC 58.574 38.462 0.00 0.00 0.00 3.06
2467 5366 7.582667 TCCAAGACGAGATAGAACATAATGA 57.417 36.000 0.00 0.00 0.00 2.57
2468 5367 7.923344 ACTTCCAAGACGAGATAGAACATAATG 59.077 37.037 0.00 0.00 0.00 1.90
2469 5368 8.012957 ACTTCCAAGACGAGATAGAACATAAT 57.987 34.615 0.00 0.00 0.00 1.28
2470 5369 7.406031 ACTTCCAAGACGAGATAGAACATAA 57.594 36.000 0.00 0.00 0.00 1.90
2471 5370 7.093902 ACAACTTCCAAGACGAGATAGAACATA 60.094 37.037 0.00 0.00 0.00 2.29
2472 5371 5.923733 ACTTCCAAGACGAGATAGAACAT 57.076 39.130 0.00 0.00 0.00 2.71
2473 5372 5.010719 ACAACTTCCAAGACGAGATAGAACA 59.989 40.000 0.00 0.00 0.00 3.18
2474 5373 5.471257 ACAACTTCCAAGACGAGATAGAAC 58.529 41.667 0.00 0.00 0.00 3.01
2475 5374 5.723672 ACAACTTCCAAGACGAGATAGAA 57.276 39.130 0.00 0.00 0.00 2.10
2476 5375 6.178324 TCTACAACTTCCAAGACGAGATAGA 58.822 40.000 0.00 0.00 0.00 1.98
2477 5376 6.438259 TCTACAACTTCCAAGACGAGATAG 57.562 41.667 0.00 0.00 0.00 2.08
2478 5377 7.406031 AATCTACAACTTCCAAGACGAGATA 57.594 36.000 0.00 0.00 0.00 1.98
2479 5378 5.923733 ATCTACAACTTCCAAGACGAGAT 57.076 39.130 0.00 0.00 0.00 2.75
2480 5379 5.723672 AATCTACAACTTCCAAGACGAGA 57.276 39.130 0.00 0.00 0.00 4.04
2481 5380 6.647067 AGAAAATCTACAACTTCCAAGACGAG 59.353 38.462 0.00 0.00 0.00 4.18
2482 5381 6.522054 AGAAAATCTACAACTTCCAAGACGA 58.478 36.000 0.00 0.00 0.00 4.20
2483 5382 6.787085 AGAAAATCTACAACTTCCAAGACG 57.213 37.500 0.00 0.00 0.00 4.18
2484 5383 8.384607 AGAAGAAAATCTACAACTTCCAAGAC 57.615 34.615 0.00 0.00 38.04 3.01
2485 5384 8.980481 AAGAAGAAAATCTACAACTTCCAAGA 57.020 30.769 0.00 0.00 38.04 3.02
2486 5385 9.061435 AGAAGAAGAAAATCTACAACTTCCAAG 57.939 33.333 0.00 0.00 38.04 3.61
2487 5386 8.980481 AGAAGAAGAAAATCTACAACTTCCAA 57.020 30.769 0.00 0.00 38.04 3.53
2488 5387 8.980481 AAGAAGAAGAAAATCTACAACTTCCA 57.020 30.769 0.00 0.00 38.04 3.53
2506 5405 9.750125 GCCAAAGATTAAAGAAGAAAAGAAGAA 57.250 29.630 0.00 0.00 0.00 2.52
2507 5406 8.360390 GGCCAAAGATTAAAGAAGAAAAGAAGA 58.640 33.333 0.00 0.00 0.00 2.87
2508 5407 7.600375 GGGCCAAAGATTAAAGAAGAAAAGAAG 59.400 37.037 4.39 0.00 0.00 2.85
2509 5408 7.441836 GGGCCAAAGATTAAAGAAGAAAAGAA 58.558 34.615 4.39 0.00 0.00 2.52
2510 5409 6.014584 GGGGCCAAAGATTAAAGAAGAAAAGA 60.015 38.462 4.39 0.00 0.00 2.52
2511 5410 6.166279 GGGGCCAAAGATTAAAGAAGAAAAG 58.834 40.000 4.39 0.00 0.00 2.27
2512 5411 5.279256 CGGGGCCAAAGATTAAAGAAGAAAA 60.279 40.000 4.39 0.00 0.00 2.29
2513 5412 4.219725 CGGGGCCAAAGATTAAAGAAGAAA 59.780 41.667 4.39 0.00 0.00 2.52
2514 5413 3.761752 CGGGGCCAAAGATTAAAGAAGAA 59.238 43.478 4.39 0.00 0.00 2.52
2515 5414 3.352648 CGGGGCCAAAGATTAAAGAAGA 58.647 45.455 4.39 0.00 0.00 2.87
2516 5415 2.159240 GCGGGGCCAAAGATTAAAGAAG 60.159 50.000 4.39 0.00 0.00 2.85
2517 5416 1.822371 GCGGGGCCAAAGATTAAAGAA 59.178 47.619 4.39 0.00 0.00 2.52
2518 5417 1.005450 AGCGGGGCCAAAGATTAAAGA 59.995 47.619 4.39 0.00 0.00 2.52
2519 5418 1.134946 CAGCGGGGCCAAAGATTAAAG 59.865 52.381 4.39 0.00 0.00 1.85
2520 5419 1.181786 CAGCGGGGCCAAAGATTAAA 58.818 50.000 4.39 0.00 0.00 1.52
2521 5420 0.682855 CCAGCGGGGCCAAAGATTAA 60.683 55.000 4.39 0.00 0.00 1.40
2522 5421 1.077068 CCAGCGGGGCCAAAGATTA 60.077 57.895 4.39 0.00 0.00 1.75
2523 5422 2.362889 CCAGCGGGGCCAAAGATT 60.363 61.111 4.39 0.00 0.00 2.40
2532 5431 2.750237 GTACTTTGGCCAGCGGGG 60.750 66.667 5.11 0.00 40.85 5.73
2533 5432 0.965363 ATTGTACTTTGGCCAGCGGG 60.965 55.000 5.11 0.00 37.18 6.13
2534 5433 0.451783 GATTGTACTTTGGCCAGCGG 59.548 55.000 5.11 2.57 0.00 5.52
2535 5434 1.453155 AGATTGTACTTTGGCCAGCG 58.547 50.000 5.11 3.31 0.00 5.18
2536 5435 3.942130 AAAGATTGTACTTTGGCCAGC 57.058 42.857 5.11 0.00 38.45 4.85
2537 5436 3.989817 GCAAAAGATTGTACTTTGGCCAG 59.010 43.478 5.11 0.00 45.61 4.85
2538 5437 3.988819 GCAAAAGATTGTACTTTGGCCA 58.011 40.909 0.00 0.00 45.61 5.36
2541 5440 8.299570 ACTTGATAGCAAAAGATTGTACTTTGG 58.700 33.333 0.00 0.00 39.57 3.28
2542 5441 9.683069 AACTTGATAGCAAAAGATTGTACTTTG 57.317 29.630 0.00 0.00 39.57 2.77
2547 5446 9.474920 CCAAAAACTTGATAGCAAAAGATTGTA 57.525 29.630 0.00 0.00 38.85 2.41
2548 5447 7.986889 ACCAAAAACTTGATAGCAAAAGATTGT 59.013 29.630 0.00 0.00 38.85 2.71
2549 5448 8.369218 ACCAAAAACTTGATAGCAAAAGATTG 57.631 30.769 0.00 0.00 39.65 2.67
2550 5449 8.829612 CAACCAAAAACTTGATAGCAAAAGATT 58.170 29.630 0.00 0.00 32.73 2.40
2551 5450 7.442062 CCAACCAAAAACTTGATAGCAAAAGAT 59.558 33.333 0.00 0.00 32.73 2.40
2552 5451 6.760770 CCAACCAAAAACTTGATAGCAAAAGA 59.239 34.615 0.00 0.00 32.73 2.52
2553 5452 6.760770 TCCAACCAAAAACTTGATAGCAAAAG 59.239 34.615 0.00 0.00 32.73 2.27
2554 5453 6.644347 TCCAACCAAAAACTTGATAGCAAAA 58.356 32.000 0.00 0.00 32.73 2.44
2555 5454 6.127196 ACTCCAACCAAAAACTTGATAGCAAA 60.127 34.615 0.00 0.00 32.73 3.68
2556 5455 5.362430 ACTCCAACCAAAAACTTGATAGCAA 59.638 36.000 0.00 0.00 0.00 3.91
2557 5456 4.892934 ACTCCAACCAAAAACTTGATAGCA 59.107 37.500 0.00 0.00 0.00 3.49
2558 5457 5.222631 CACTCCAACCAAAAACTTGATAGC 58.777 41.667 0.00 0.00 0.00 2.97
2559 5458 5.772521 CCACTCCAACCAAAAACTTGATAG 58.227 41.667 0.00 0.00 0.00 2.08
2560 5459 4.038642 GCCACTCCAACCAAAAACTTGATA 59.961 41.667 0.00 0.00 0.00 2.15
2561 5460 3.181466 GCCACTCCAACCAAAAACTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
2562 5461 2.167487 GCCACTCCAACCAAAAACTTGA 59.833 45.455 0.00 0.00 0.00 3.02
2563 5462 2.549926 GCCACTCCAACCAAAAACTTG 58.450 47.619 0.00 0.00 0.00 3.16
2564 5463 1.484653 GGCCACTCCAACCAAAAACTT 59.515 47.619 0.00 0.00 34.01 2.66
2565 5464 1.119684 GGCCACTCCAACCAAAAACT 58.880 50.000 0.00 0.00 34.01 2.66
2566 5465 1.119684 AGGCCACTCCAACCAAAAAC 58.880 50.000 5.01 0.00 37.29 2.43
2567 5466 2.757894 TAGGCCACTCCAACCAAAAA 57.242 45.000 5.01 0.00 37.29 1.94
2568 5467 2.990740 ATAGGCCACTCCAACCAAAA 57.009 45.000 5.01 0.00 37.29 2.44
2569 5468 2.896685 CAAATAGGCCACTCCAACCAAA 59.103 45.455 5.01 0.00 37.29 3.28
2570 5469 2.524306 CAAATAGGCCACTCCAACCAA 58.476 47.619 5.01 0.00 37.29 3.67
2571 5470 1.890573 GCAAATAGGCCACTCCAACCA 60.891 52.381 5.01 0.00 37.29 3.67
2572 5471 0.817654 GCAAATAGGCCACTCCAACC 59.182 55.000 5.01 0.00 37.29 3.77
2582 5481 6.459066 AGAAGAAAGAAAAAGGCAAATAGGC 58.541 36.000 0.00 0.00 44.61 3.93
2583 5482 8.363390 AGAAGAAGAAAGAAAAAGGCAAATAGG 58.637 33.333 0.00 0.00 0.00 2.57
2584 5483 9.755804 AAGAAGAAGAAAGAAAAAGGCAAATAG 57.244 29.630 0.00 0.00 0.00 1.73
2586 5485 9.453572 AAAAGAAGAAGAAAGAAAAAGGCAAAT 57.546 25.926 0.00 0.00 0.00 2.32
2587 5486 8.720562 CAAAAGAAGAAGAAAGAAAAAGGCAAA 58.279 29.630 0.00 0.00 0.00 3.68
2588 5487 8.093927 TCAAAAGAAGAAGAAAGAAAAAGGCAA 58.906 29.630 0.00 0.00 0.00 4.52
2589 5488 7.610865 TCAAAAGAAGAAGAAAGAAAAAGGCA 58.389 30.769 0.00 0.00 0.00 4.75
2590 5489 8.479313 TTCAAAAGAAGAAGAAAGAAAAAGGC 57.521 30.769 0.00 0.00 0.00 4.35
2598 5497 7.766283 AGGTGTCTTTCAAAAGAAGAAGAAAG 58.234 34.615 6.76 0.00 45.77 2.62
2599 5498 7.703058 AGGTGTCTTTCAAAAGAAGAAGAAA 57.297 32.000 6.76 0.00 45.77 2.52
2600 5499 8.047310 ACTAGGTGTCTTTCAAAAGAAGAAGAA 58.953 33.333 6.76 0.00 45.77 2.52
2601 5500 7.565680 ACTAGGTGTCTTTCAAAAGAAGAAGA 58.434 34.615 6.76 0.00 45.77 2.87
2602 5501 7.793927 ACTAGGTGTCTTTCAAAAGAAGAAG 57.206 36.000 6.76 4.19 45.77 2.85
2603 5502 7.610305 ACAACTAGGTGTCTTTCAAAAGAAGAA 59.390 33.333 7.87 0.00 45.77 2.52
2604 5503 7.065803 CACAACTAGGTGTCTTTCAAAAGAAGA 59.934 37.037 11.42 0.00 45.77 2.87
2605 5504 7.189512 CACAACTAGGTGTCTTTCAAAAGAAG 58.810 38.462 11.42 3.74 45.77 2.85
2606 5505 6.094881 CCACAACTAGGTGTCTTTCAAAAGAA 59.905 38.462 11.42 0.00 45.77 2.52
2607 5506 5.588648 CCACAACTAGGTGTCTTTCAAAAGA 59.411 40.000 11.42 1.06 38.00 2.52
2608 5507 5.357032 ACCACAACTAGGTGTCTTTCAAAAG 59.643 40.000 11.42 0.00 38.13 2.27
2609 5508 5.258051 ACCACAACTAGGTGTCTTTCAAAA 58.742 37.500 11.42 0.00 38.13 2.44
2610 5509 4.850680 ACCACAACTAGGTGTCTTTCAAA 58.149 39.130 11.42 0.00 38.13 2.69
2611 5510 4.497291 ACCACAACTAGGTGTCTTTCAA 57.503 40.909 11.42 0.00 38.13 2.69
2612 5511 4.497291 AACCACAACTAGGTGTCTTTCA 57.503 40.909 11.42 0.00 39.86 2.69
2613 5512 5.830000 AAAACCACAACTAGGTGTCTTTC 57.170 39.130 11.42 0.00 39.86 2.62
2614 5513 6.095860 GGTAAAAACCACAACTAGGTGTCTTT 59.904 38.462 11.42 8.77 39.86 2.52
2615 5514 5.591472 GGTAAAAACCACAACTAGGTGTCTT 59.409 40.000 11.42 2.27 39.86 3.01
2616 5515 5.128205 GGTAAAAACCACAACTAGGTGTCT 58.872 41.667 11.42 0.00 39.86 3.41
2617 5516 4.276678 GGGTAAAAACCACAACTAGGTGTC 59.723 45.833 11.42 0.00 39.86 3.67
2618 5517 4.209538 GGGTAAAAACCACAACTAGGTGT 58.790 43.478 7.87 7.87 39.86 4.16
2619 5518 3.570975 GGGGTAAAAACCACAACTAGGTG 59.429 47.826 6.14 6.14 39.86 4.00
2620 5519 3.748348 CGGGGTAAAAACCACAACTAGGT 60.748 47.826 0.00 0.00 42.34 3.08
2621 5520 2.815503 CGGGGTAAAAACCACAACTAGG 59.184 50.000 0.00 0.00 31.08 3.02
2622 5521 2.815503 CCGGGGTAAAAACCACAACTAG 59.184 50.000 0.00 0.00 31.08 2.57
2623 5522 2.441001 TCCGGGGTAAAAACCACAACTA 59.559 45.455 0.00 0.00 31.08 2.24
2624 5523 1.214923 TCCGGGGTAAAAACCACAACT 59.785 47.619 0.00 0.00 31.08 3.16
2625 5524 1.689984 TCCGGGGTAAAAACCACAAC 58.310 50.000 0.00 0.00 31.08 3.32
2626 5525 2.158505 TGATCCGGGGTAAAAACCACAA 60.159 45.455 0.00 0.00 31.08 3.33
2627 5526 1.424302 TGATCCGGGGTAAAAACCACA 59.576 47.619 0.00 0.00 31.08 4.17
2628 5527 2.203470 TGATCCGGGGTAAAAACCAC 57.797 50.000 0.00 0.00 0.00 4.16
2629 5528 3.093057 CAATGATCCGGGGTAAAAACCA 58.907 45.455 0.00 0.00 0.00 3.67
2630 5529 3.129813 GTCAATGATCCGGGGTAAAAACC 59.870 47.826 0.00 0.00 0.00 3.27
2631 5530 4.014406 AGTCAATGATCCGGGGTAAAAAC 58.986 43.478 0.00 0.00 0.00 2.43
2632 5531 4.263550 TGAGTCAATGATCCGGGGTAAAAA 60.264 41.667 0.00 0.00 0.00 1.94
2633 5532 3.264706 TGAGTCAATGATCCGGGGTAAAA 59.735 43.478 0.00 0.00 0.00 1.52
2634 5533 2.841266 TGAGTCAATGATCCGGGGTAAA 59.159 45.455 0.00 0.00 0.00 2.01
2635 5534 2.473070 TGAGTCAATGATCCGGGGTAA 58.527 47.619 0.00 0.00 0.00 2.85
2636 5535 2.168458 TGAGTCAATGATCCGGGGTA 57.832 50.000 0.00 0.00 0.00 3.69
2637 5536 1.285280 TTGAGTCAATGATCCGGGGT 58.715 50.000 0.00 0.00 0.00 4.95
2638 5537 2.017049 GTTTGAGTCAATGATCCGGGG 58.983 52.381 6.36 0.00 0.00 5.73
2639 5538 2.017049 GGTTTGAGTCAATGATCCGGG 58.983 52.381 6.36 0.00 0.00 5.73
2640 5539 2.679837 CAGGTTTGAGTCAATGATCCGG 59.320 50.000 6.36 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.