Multiple sequence alignment - TraesCS7A01G047800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G047800 chr7A 100.000 2696 0 0 1 2696 21713070 21710375 0.000000e+00 4979.0
1 TraesCS7A01G047800 chr7A 93.382 1647 85 16 77 1713 21959388 21957756 0.000000e+00 2416.0
2 TraesCS7A01G047800 chr7A 90.582 1168 87 16 381 1542 21986184 21985034 0.000000e+00 1526.0
3 TraesCS7A01G047800 chr7A 90.805 1131 64 14 381 1497 21597371 21596267 0.000000e+00 1476.0
4 TraesCS7A01G047800 chr7A 90.484 641 47 9 77 711 21561679 21561047 0.000000e+00 833.0
5 TraesCS7A01G047800 chr7A 85.838 579 75 4 1135 1713 21609320 21609891 2.300000e-170 608.0
6 TraesCS7A01G047800 chr7A 85.147 579 80 3 1135 1713 22017988 22018560 2.990000e-164 588.0
7 TraesCS7A01G047800 chr7A 79.630 324 30 22 759 1072 22017544 22017841 1.640000e-47 200.0
8 TraesCS7A01G047800 chr7A 86.207 174 8 7 789 958 21608928 21609089 9.920000e-40 174.0
9 TraesCS7A01G047800 chr7A 95.506 89 4 0 2193 2281 695896456 695896544 2.800000e-30 143.0
10 TraesCS7A01G047800 chr7A 85.816 141 10 6 1563 1694 22367153 22367014 1.010000e-29 141.0
11 TraesCS7A01G047800 chr7A 97.436 39 1 0 2656 2694 21802421 21802383 1.730000e-07 67.6
12 TraesCS7A01G047800 chr7D 91.013 1580 55 24 144 1713 21121414 21122916 0.000000e+00 2050.0
13 TraesCS7A01G047800 chr7D 91.013 1580 55 24 144 1713 21486201 21484699 0.000000e+00 2050.0
14 TraesCS7A01G047800 chr7D 87.292 480 55 3 1234 1713 21852465 21851992 6.560000e-151 544.0
15 TraesCS7A01G047800 chr7D 94.052 269 16 0 2366 2634 172372326 172372058 2.500000e-110 409.0
16 TraesCS7A01G047800 chr7D 92.000 275 21 1 2359 2632 415051738 415051464 4.210000e-103 385.0
17 TraesCS7A01G047800 chr4A 90.275 1090 58 17 427 1506 712733792 712734843 0.000000e+00 1382.0
18 TraesCS7A01G047800 chr4A 89.450 1090 66 18 427 1506 712764451 712765501 0.000000e+00 1330.0
19 TraesCS7A01G047800 chr4A 92.907 860 42 8 870 1713 669044101 669044957 0.000000e+00 1232.0
20 TraesCS7A01G047800 chr4A 90.099 808 43 15 6 812 669043328 669044099 0.000000e+00 1014.0
21 TraesCS7A01G047800 chr4A 88.578 429 24 12 6 429 712733303 712733711 5.180000e-137 497.0
22 TraesCS7A01G047800 chr4A 88.578 429 24 13 6 429 712763971 712764379 5.180000e-137 497.0
23 TraesCS7A01G047800 chr4A 91.667 276 23 0 2358 2633 470875139 470875414 1.510000e-102 383.0
24 TraesCS7A01G047800 chr4A 85.088 114 11 2 847 958 669088862 669088753 7.890000e-21 111.0
25 TraesCS7A01G047800 chr6A 88.200 500 46 2 1709 2195 29366638 29367137 3.870000e-163 584.0
26 TraesCS7A01G047800 chr6A 94.485 272 12 2 2366 2637 499586177 499585909 1.490000e-112 416.0
27 TraesCS7A01G047800 chr5D 87.747 506 39 11 1711 2195 120392867 120393370 1.080000e-158 569.0
28 TraesCS7A01G047800 chr5D 84.584 493 62 6 1711 2189 352366628 352367120 6.750000e-131 477.0
29 TraesCS7A01G047800 chr5D 94.382 267 15 0 2368 2634 135071417 135071151 6.950000e-111 411.0
30 TraesCS7A01G047800 chr5D 94.444 90 4 1 2193 2281 285670648 285670559 1.300000e-28 137.0
31 TraesCS7A01G047800 chrUn 86.382 492 60 4 1711 2195 34142352 34141861 5.110000e-147 531.0
32 TraesCS7A01G047800 chrUn 86.626 486 58 4 1711 2189 34206234 34206719 5.110000e-147 531.0
33 TraesCS7A01G047800 chrUn 94.382 89 5 0 2193 2281 132213103 132213191 1.300000e-28 137.0
34 TraesCS7A01G047800 chr4D 83.168 606 65 16 1711 2281 454645036 454644433 1.110000e-143 520.0
35 TraesCS7A01G047800 chr4D 95.149 268 13 0 2366 2633 403023080 403022813 8.920000e-115 424.0
36 TraesCS7A01G047800 chr6B 84.879 496 61 7 1711 2195 11400084 11399592 3.120000e-134 488.0
37 TraesCS7A01G047800 chr6B 93.796 274 17 0 2361 2634 579179511 579179238 1.930000e-111 412.0
38 TraesCS7A01G047800 chr3A 84.917 484 63 7 1711 2188 540973020 540972541 5.220000e-132 481.0
39 TraesCS7A01G047800 chr3A 90.511 274 26 0 2360 2633 79191153 79191426 1.970000e-96 363.0
40 TraesCS7A01G047800 chr3A 90.217 276 27 0 2358 2633 587389788 587390063 7.100000e-96 361.0
41 TraesCS7A01G047800 chr3A 90.441 272 26 0 2360 2631 621334579 621334850 2.550000e-95 359.0
42 TraesCS7A01G047800 chr1D 83.768 499 63 6 1711 2195 56633924 56633430 8.800000e-125 457.0
43 TraesCS7A01G047800 chr1D 94.444 90 4 1 2193 2281 88381954 88382043 1.300000e-28 137.0
44 TraesCS7A01G047800 chr5B 94.946 277 12 2 2365 2640 253884713 253884988 1.480000e-117 433.0
45 TraesCS7A01G047800 chr3B 94.815 270 14 0 2365 2634 327046363 327046632 3.210000e-114 422.0
46 TraesCS7A01G047800 chr1B 94.485 272 14 1 2363 2634 490208327 490208597 4.150000e-113 418.0
47 TraesCS7A01G047800 chr4B 94.403 268 15 0 2366 2633 58974681 58974414 1.930000e-111 412.0
48 TraesCS7A01G047800 chr6D 93.561 264 17 0 2368 2631 176234716 176234453 7.000000e-106 394.0
49 TraesCS7A01G047800 chr6D 91.667 276 23 0 2358 2633 454294705 454294980 1.510000e-102 383.0
50 TraesCS7A01G047800 chr6D 90.253 277 25 2 2359 2633 11727669 11727945 7.100000e-96 361.0
51 TraesCS7A01G047800 chr6D 94.444 90 4 1 2193 2281 288592689 288592778 1.300000e-28 137.0
52 TraesCS7A01G047800 chr5A 90.909 275 24 1 2360 2633 328942915 328942641 4.240000e-98 368.0
53 TraesCS7A01G047800 chr5A 96.591 88 2 1 2193 2279 552597517 552597430 7.780000e-31 145.0
54 TraesCS7A01G047800 chr3D 95.506 89 4 0 2193 2281 551030971 551031059 2.800000e-30 143.0
55 TraesCS7A01G047800 chr3D 94.444 90 4 1 2193 2281 587508281 587508192 1.300000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G047800 chr7A 21710375 21713070 2695 True 4979.0 4979 100.0000 1 2696 1 chr7A.!!$R3 2695
1 TraesCS7A01G047800 chr7A 21957756 21959388 1632 True 2416.0 2416 93.3820 77 1713 1 chr7A.!!$R5 1636
2 TraesCS7A01G047800 chr7A 21985034 21986184 1150 True 1526.0 1526 90.5820 381 1542 1 chr7A.!!$R6 1161
3 TraesCS7A01G047800 chr7A 21596267 21597371 1104 True 1476.0 1476 90.8050 381 1497 1 chr7A.!!$R2 1116
4 TraesCS7A01G047800 chr7A 21561047 21561679 632 True 833.0 833 90.4840 77 711 1 chr7A.!!$R1 634
5 TraesCS7A01G047800 chr7A 22017544 22018560 1016 False 394.0 588 82.3885 759 1713 2 chr7A.!!$F3 954
6 TraesCS7A01G047800 chr7A 21608928 21609891 963 False 391.0 608 86.0225 789 1713 2 chr7A.!!$F2 924
7 TraesCS7A01G047800 chr7D 21121414 21122916 1502 False 2050.0 2050 91.0130 144 1713 1 chr7D.!!$F1 1569
8 TraesCS7A01G047800 chr7D 21484699 21486201 1502 True 2050.0 2050 91.0130 144 1713 1 chr7D.!!$R1 1569
9 TraesCS7A01G047800 chr4A 669043328 669044957 1629 False 1123.0 1232 91.5030 6 1713 2 chr4A.!!$F2 1707
10 TraesCS7A01G047800 chr4A 712733303 712734843 1540 False 939.5 1382 89.4265 6 1506 2 chr4A.!!$F3 1500
11 TraesCS7A01G047800 chr4A 712763971 712765501 1530 False 913.5 1330 89.0140 6 1506 2 chr4A.!!$F4 1500
12 TraesCS7A01G047800 chr5D 120392867 120393370 503 False 569.0 569 87.7470 1711 2195 1 chr5D.!!$F1 484
13 TraesCS7A01G047800 chr4D 454644433 454645036 603 True 520.0 520 83.1680 1711 2281 1 chr4D.!!$R2 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 1077 0.413037 ATCCAATCCCCAAACCAGCA 59.587 50.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 2678 0.037139 ATAAACTGGCCGCGTACACA 60.037 50.0 4.92 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 1.134670 TGCCGTTTTTGGTTTTCCCTG 60.135 47.619 0.00 0.00 39.73 4.45
208 213 9.760077 AATAGTAATCGGTTATTGACTTACCAG 57.240 33.333 0.00 0.00 32.12 4.00
250 272 7.507733 AATAATTGGTAAACGTGTGTTACCA 57.492 32.000 21.13 21.13 38.65 3.25
251 273 7.690952 ATAATTGGTAAACGTGTGTTACCAT 57.309 32.000 24.06 15.91 39.38 3.55
292 316 6.490040 GCCCATGATTGTGTACATATTTAGGT 59.510 38.462 0.00 0.00 0.00 3.08
309 333 2.822255 TAGGCAAATCGCGGGCAC 60.822 61.111 6.13 0.32 43.84 5.01
323 347 2.525055 CGGGCACGATTTTATTTGGTG 58.475 47.619 0.00 0.00 44.60 4.17
425 536 1.134487 CGCACGGGCATGTTTACTG 59.866 57.895 11.77 0.00 41.24 2.74
504 616 8.076714 TGATTAGAAGCATCACGAAACATATC 57.923 34.615 0.00 0.00 0.00 1.63
728 866 4.758251 CGGCCCAGCGTGTCATGA 62.758 66.667 0.00 0.00 0.00 3.07
729 867 2.124570 GGCCCAGCGTGTCATGAT 60.125 61.111 0.00 0.00 0.00 2.45
730 868 2.182842 GGCCCAGCGTGTCATGATC 61.183 63.158 0.00 0.00 0.00 2.92
731 869 2.528743 GCCCAGCGTGTCATGATCG 61.529 63.158 15.55 15.55 0.00 3.69
732 870 1.884464 CCCAGCGTGTCATGATCGG 60.884 63.158 19.40 5.68 0.00 4.18
733 871 1.153568 CCAGCGTGTCATGATCGGT 60.154 57.895 17.57 17.57 35.75 4.69
734 872 2.001357 CAGCGTGTCATGATCGGTG 58.999 57.895 27.20 27.20 44.05 4.94
785 923 3.744719 TCGAGTTCCGGCCGAGTG 61.745 66.667 30.73 10.73 39.14 3.51
928 1077 0.413037 ATCCAATCCCCAAACCAGCA 59.587 50.000 0.00 0.00 0.00 4.41
964 1129 2.537401 GAAACCCAAGATCTACGTCGG 58.463 52.381 0.00 0.00 0.00 4.79
1072 1241 2.513897 CCAATTCGACGGAGGCCC 60.514 66.667 0.00 0.00 0.00 5.80
1144 1397 1.316706 GGAGGGTGACGAGTCAGAGG 61.317 65.000 6.13 0.00 40.75 3.69
1300 1562 0.251354 TGCCCTGAAGCTAGAGCAAG 59.749 55.000 4.01 0.00 45.16 4.01
1453 1715 1.212751 CAGGTCATCGCGTCTGTGA 59.787 57.895 5.77 4.05 39.32 3.58
1795 2057 1.569479 GGAGTGGCTTCGTCTTGCAC 61.569 60.000 0.00 0.00 0.00 4.57
1806 2068 3.793144 CTTGCACGGAGCTTCGGC 61.793 66.667 20.69 19.00 45.94 5.54
1825 2092 1.530771 GGAGATGTCATGCCTGGCT 59.469 57.895 21.03 2.27 0.00 4.75
1830 2097 1.687014 TGTCATGCCTGGCTGACAT 59.313 52.632 31.76 14.40 45.01 3.06
1858 2125 0.606401 CTTTGTCATGCCTGGTCGGT 60.606 55.000 0.00 0.00 34.25 4.69
1869 2136 1.002257 TGGTCGGTAGGTGCTACGA 60.002 57.895 0.00 0.00 37.79 3.43
1879 2146 1.544691 AGGTGCTACGAACGACAGATT 59.455 47.619 0.14 0.00 0.00 2.40
1896 2163 6.179906 ACAGATTTTCCAGAGACTTCAAGA 57.820 37.500 0.00 0.00 0.00 3.02
1908 2175 1.081892 CTTCAAGATGTGTCGGCTGG 58.918 55.000 0.00 0.00 0.00 4.85
1963 2238 1.661821 GACGTGCTCAGCAGTTCGT 60.662 57.895 13.14 13.14 40.08 3.85
1980 2255 3.000819 TGCGTAGGGAGGTGGTGG 61.001 66.667 0.00 0.00 0.00 4.61
1982 2257 3.000819 CGTAGGGAGGTGGTGGCA 61.001 66.667 0.00 0.00 0.00 4.92
2049 2324 1.177401 TGCGTCAGTACAGCTCTGAT 58.823 50.000 6.86 0.00 42.63 2.90
2051 2326 1.135257 GCGTCAGTACAGCTCTGATGT 60.135 52.381 19.03 3.37 45.35 3.06
2091 2366 3.386237 GGTGGCCTCTGAGAGCGT 61.386 66.667 3.32 0.00 0.00 5.07
2112 2388 3.315949 GGACCGGTGTGTGCCCTA 61.316 66.667 14.63 0.00 0.00 3.53
2113 2389 2.264794 GACCGGTGTGTGCCCTAG 59.735 66.667 14.63 0.00 0.00 3.02
2134 2410 0.250553 CCCGACAAGTGGCTTGGTTA 60.251 55.000 12.66 0.00 44.81 2.85
2138 2414 0.850784 ACAAGTGGCTTGGTTAGGGT 59.149 50.000 12.66 0.00 44.81 4.34
2159 2435 4.202172 GGTCTCAGGTCTTAGATGTTAGGC 60.202 50.000 0.00 0.00 0.00 3.93
2160 2436 3.632604 TCTCAGGTCTTAGATGTTAGGCG 59.367 47.826 0.00 0.00 0.00 5.52
2164 2448 2.167900 GGTCTTAGATGTTAGGCGTGGT 59.832 50.000 0.00 0.00 0.00 4.16
2166 2450 3.617263 GTCTTAGATGTTAGGCGTGGTTG 59.383 47.826 0.00 0.00 0.00 3.77
2182 2466 1.479323 GGTTGCGAGGTCTGTGGTATA 59.521 52.381 0.00 0.00 0.00 1.47
2185 2469 2.453521 TGCGAGGTCTGTGGTATAAGT 58.546 47.619 0.00 0.00 0.00 2.24
2287 2619 2.664402 ATCGCCCAGATGCCTAAATT 57.336 45.000 0.00 0.00 38.36 1.82
2288 2620 3.788227 ATCGCCCAGATGCCTAAATTA 57.212 42.857 0.00 0.00 38.36 1.40
2289 2621 2.846193 TCGCCCAGATGCCTAAATTAC 58.154 47.619 0.00 0.00 0.00 1.89
2290 2622 1.880027 CGCCCAGATGCCTAAATTACC 59.120 52.381 0.00 0.00 0.00 2.85
2291 2623 2.487265 CGCCCAGATGCCTAAATTACCT 60.487 50.000 0.00 0.00 0.00 3.08
2292 2624 2.887152 GCCCAGATGCCTAAATTACCTG 59.113 50.000 0.00 0.00 0.00 4.00
2293 2625 2.887152 CCCAGATGCCTAAATTACCTGC 59.113 50.000 0.00 0.00 0.00 4.85
2294 2626 2.887152 CCAGATGCCTAAATTACCTGCC 59.113 50.000 0.00 0.00 0.00 4.85
2295 2627 2.887152 CAGATGCCTAAATTACCTGCCC 59.113 50.000 0.00 0.00 0.00 5.36
2296 2628 2.513738 AGATGCCTAAATTACCTGCCCA 59.486 45.455 0.00 0.00 0.00 5.36
2297 2629 3.140895 AGATGCCTAAATTACCTGCCCAT 59.859 43.478 0.00 0.00 0.00 4.00
2298 2630 2.665165 TGCCTAAATTACCTGCCCATG 58.335 47.619 0.00 0.00 0.00 3.66
2299 2631 2.024464 TGCCTAAATTACCTGCCCATGT 60.024 45.455 0.00 0.00 0.00 3.21
2300 2632 3.203263 TGCCTAAATTACCTGCCCATGTA 59.797 43.478 0.00 0.00 0.00 2.29
2301 2633 3.821033 GCCTAAATTACCTGCCCATGTAG 59.179 47.826 0.00 0.00 0.00 2.74
2302 2634 4.445735 GCCTAAATTACCTGCCCATGTAGA 60.446 45.833 0.00 0.00 0.00 2.59
2303 2635 5.749032 GCCTAAATTACCTGCCCATGTAGAT 60.749 44.000 0.00 0.00 0.00 1.98
2304 2636 5.940470 CCTAAATTACCTGCCCATGTAGATC 59.060 44.000 0.00 0.00 0.00 2.75
2305 2637 5.387113 AAATTACCTGCCCATGTAGATCA 57.613 39.130 0.00 0.00 0.00 2.92
2306 2638 5.387113 AATTACCTGCCCATGTAGATCAA 57.613 39.130 0.00 0.00 0.00 2.57
2307 2639 5.589367 ATTACCTGCCCATGTAGATCAAT 57.411 39.130 0.00 0.00 0.00 2.57
2308 2640 3.959495 ACCTGCCCATGTAGATCAATT 57.041 42.857 0.00 0.00 0.00 2.32
2309 2641 6.508030 TTACCTGCCCATGTAGATCAATTA 57.492 37.500 0.00 0.00 0.00 1.40
2310 2642 5.387113 ACCTGCCCATGTAGATCAATTAA 57.613 39.130 0.00 0.00 0.00 1.40
2311 2643 5.765510 ACCTGCCCATGTAGATCAATTAAA 58.234 37.500 0.00 0.00 0.00 1.52
2312 2644 6.376248 ACCTGCCCATGTAGATCAATTAAAT 58.624 36.000 0.00 0.00 0.00 1.40
2313 2645 6.491403 ACCTGCCCATGTAGATCAATTAAATC 59.509 38.462 0.00 0.00 0.00 2.17
2314 2646 6.718454 CCTGCCCATGTAGATCAATTAAATCT 59.282 38.462 0.00 7.46 37.29 2.40
2315 2647 7.309012 CCTGCCCATGTAGATCAATTAAATCTG 60.309 40.741 11.11 0.00 35.20 2.90
2316 2648 7.289310 TGCCCATGTAGATCAATTAAATCTGA 58.711 34.615 11.11 0.00 35.20 3.27
2317 2649 7.229306 TGCCCATGTAGATCAATTAAATCTGAC 59.771 37.037 11.11 7.30 35.20 3.51
2318 2650 7.446625 GCCCATGTAGATCAATTAAATCTGACT 59.553 37.037 11.11 0.00 35.20 3.41
2319 2651 8.997323 CCCATGTAGATCAATTAAATCTGACTC 58.003 37.037 11.11 3.06 35.20 3.36
2320 2652 9.775854 CCATGTAGATCAATTAAATCTGACTCT 57.224 33.333 11.11 2.57 35.20 3.24
2330 2662 9.578439 CAATTAAATCTGACTCTTCAATTTCCC 57.422 33.333 0.00 0.00 31.09 3.97
2331 2663 5.886960 AAATCTGACTCTTCAATTTCCCG 57.113 39.130 0.00 0.00 0.00 5.14
2332 2664 2.699954 TCTGACTCTTCAATTTCCCGC 58.300 47.619 0.00 0.00 0.00 6.13
2333 2665 1.394917 CTGACTCTTCAATTTCCCGCG 59.605 52.381 0.00 0.00 0.00 6.46
2334 2666 0.727398 GACTCTTCAATTTCCCGCGG 59.273 55.000 21.04 21.04 0.00 6.46
2335 2667 0.676782 ACTCTTCAATTTCCCGCGGG 60.677 55.000 39.13 39.13 0.00 6.13
2336 2668 1.993369 CTCTTCAATTTCCCGCGGGC 61.993 60.000 39.89 0.00 34.68 6.13
2337 2669 3.063743 CTTCAATTTCCCGCGGGCC 62.064 63.158 39.89 0.00 34.68 5.80
2338 2670 3.870024 TTCAATTTCCCGCGGGCCA 62.870 57.895 39.89 27.56 34.68 5.36
2339 2671 3.825611 CAATTTCCCGCGGGCCAG 61.826 66.667 39.89 21.83 34.68 4.85
2340 2672 4.360405 AATTTCCCGCGGGCCAGT 62.360 61.111 39.89 23.87 34.68 4.00
2347 2679 4.326766 CGCGGGCCAGTGTTGTTG 62.327 66.667 4.39 0.00 0.00 3.33
2348 2680 3.216292 GCGGGCCAGTGTTGTTGT 61.216 61.111 4.39 0.00 0.00 3.32
2349 2681 2.721231 CGGGCCAGTGTTGTTGTG 59.279 61.111 4.39 0.00 0.00 3.33
2350 2682 2.118404 CGGGCCAGTGTTGTTGTGT 61.118 57.895 4.39 0.00 0.00 3.72
2351 2683 0.816018 CGGGCCAGTGTTGTTGTGTA 60.816 55.000 4.39 0.00 0.00 2.90
2352 2684 0.666374 GGGCCAGTGTTGTTGTGTAC 59.334 55.000 4.39 0.00 0.00 2.90
2353 2685 0.306533 GGCCAGTGTTGTTGTGTACG 59.693 55.000 0.00 0.00 0.00 3.67
2354 2686 0.316689 GCCAGTGTTGTTGTGTACGC 60.317 55.000 0.00 0.00 0.00 4.42
2355 2687 0.042535 CCAGTGTTGTTGTGTACGCG 60.043 55.000 3.53 3.53 0.00 6.01
2356 2688 0.042535 CAGTGTTGTTGTGTACGCGG 60.043 55.000 12.47 0.00 0.00 6.46
2357 2689 1.368374 GTGTTGTTGTGTACGCGGC 60.368 57.895 12.47 3.05 0.00 6.53
2358 2690 2.250190 GTTGTTGTGTACGCGGCC 59.750 61.111 12.47 0.00 0.00 6.13
2359 2691 2.203029 TTGTTGTGTACGCGGCCA 60.203 55.556 12.47 2.88 0.00 5.36
2360 2692 2.248135 TTGTTGTGTACGCGGCCAG 61.248 57.895 12.47 0.00 0.00 4.85
2361 2693 2.663852 GTTGTGTACGCGGCCAGT 60.664 61.111 12.47 4.56 0.00 4.00
2362 2694 2.109387 TTGTGTACGCGGCCAGTT 59.891 55.556 12.47 0.00 0.00 3.16
2363 2695 1.524165 TTGTGTACGCGGCCAGTTT 60.524 52.632 12.47 0.00 0.00 2.66
2364 2696 0.249784 TTGTGTACGCGGCCAGTTTA 60.250 50.000 12.47 0.00 0.00 2.01
2365 2697 0.037139 TGTGTACGCGGCCAGTTTAT 60.037 50.000 12.47 0.00 0.00 1.40
2366 2698 1.204231 TGTGTACGCGGCCAGTTTATA 59.796 47.619 12.47 0.00 0.00 0.98
2367 2699 2.270047 GTGTACGCGGCCAGTTTATAA 58.730 47.619 12.47 0.00 0.00 0.98
2368 2700 2.283351 GTGTACGCGGCCAGTTTATAAG 59.717 50.000 12.47 0.00 0.00 1.73
2369 2701 1.862827 GTACGCGGCCAGTTTATAAGG 59.137 52.381 12.47 0.00 0.00 2.69
2380 2712 6.760291 GCCAGTTTATAAGGCTAGTCATAGT 58.240 40.000 6.91 0.00 44.92 2.12
2381 2713 6.647067 GCCAGTTTATAAGGCTAGTCATAGTG 59.353 42.308 6.91 0.00 44.92 2.74
2382 2714 7.155328 CCAGTTTATAAGGCTAGTCATAGTGG 58.845 42.308 0.00 0.00 0.00 4.00
2383 2715 7.015292 CCAGTTTATAAGGCTAGTCATAGTGGA 59.985 40.741 0.00 0.00 0.00 4.02
2384 2716 8.085296 CAGTTTATAAGGCTAGTCATAGTGGAG 58.915 40.741 0.00 0.00 0.00 3.86
2385 2717 8.005388 AGTTTATAAGGCTAGTCATAGTGGAGA 58.995 37.037 0.00 0.00 0.00 3.71
2386 2718 8.301002 GTTTATAAGGCTAGTCATAGTGGAGAG 58.699 40.741 0.00 0.00 0.00 3.20
2387 2719 3.963476 AGGCTAGTCATAGTGGAGAGT 57.037 47.619 0.00 0.00 0.00 3.24
2388 2720 5.390087 AAGGCTAGTCATAGTGGAGAGTA 57.610 43.478 0.00 0.00 0.00 2.59
2389 2721 5.390087 AGGCTAGTCATAGTGGAGAGTAA 57.610 43.478 0.00 0.00 0.00 2.24
2390 2722 5.134661 AGGCTAGTCATAGTGGAGAGTAAC 58.865 45.833 0.00 0.00 0.00 2.50
2391 2723 5.103855 AGGCTAGTCATAGTGGAGAGTAACT 60.104 44.000 0.00 0.00 0.00 2.24
2392 2724 5.595133 GGCTAGTCATAGTGGAGAGTAACTT 59.405 44.000 0.00 0.00 0.00 2.66
2393 2725 6.771749 GGCTAGTCATAGTGGAGAGTAACTTA 59.228 42.308 0.00 0.00 0.00 2.24
2394 2726 7.040961 GGCTAGTCATAGTGGAGAGTAACTTAG 60.041 44.444 0.00 0.00 0.00 2.18
2395 2727 7.716123 GCTAGTCATAGTGGAGAGTAACTTAGA 59.284 40.741 0.00 0.00 0.00 2.10
2396 2728 7.868906 AGTCATAGTGGAGAGTAACTTAGAC 57.131 40.000 0.00 0.00 33.07 2.59
2397 2729 7.635648 AGTCATAGTGGAGAGTAACTTAGACT 58.364 38.462 0.00 0.00 35.89 3.24
2398 2730 8.770322 AGTCATAGTGGAGAGTAACTTAGACTA 58.230 37.037 0.00 0.00 37.46 2.59
2399 2731 9.048446 GTCATAGTGGAGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
2400 2732 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
2401 2733 8.832521 CATAGTGGAGAGTAACTTAGACTAGTG 58.167 40.741 0.00 0.00 0.00 2.74
2402 2734 6.781943 AGTGGAGAGTAACTTAGACTAGTGT 58.218 40.000 0.00 0.00 0.00 3.55
2403 2735 6.880529 AGTGGAGAGTAACTTAGACTAGTGTC 59.119 42.308 0.00 0.00 43.22 3.67
2421 2753 4.028852 TGTCGTGCATATGACACTAGTC 57.971 45.455 20.51 12.19 45.42 2.59
2422 2754 3.694566 TGTCGTGCATATGACACTAGTCT 59.305 43.478 20.51 0.00 45.42 3.24
2423 2755 4.879545 TGTCGTGCATATGACACTAGTCTA 59.120 41.667 20.51 5.96 45.42 2.59
2424 2756 5.355910 TGTCGTGCATATGACACTAGTCTAA 59.644 40.000 20.51 4.75 45.42 2.10
2425 2757 5.910166 GTCGTGCATATGACACTAGTCTAAG 59.090 44.000 20.51 8.73 45.20 2.18
2426 2758 5.589050 TCGTGCATATGACACTAGTCTAAGT 59.411 40.000 20.51 0.00 45.20 2.24
2427 2759 6.095021 TCGTGCATATGACACTAGTCTAAGTT 59.905 38.462 20.51 0.00 45.20 2.66
2428 2760 7.281549 TCGTGCATATGACACTAGTCTAAGTTA 59.718 37.037 20.51 0.00 45.20 2.24
2429 2761 7.376336 CGTGCATATGACACTAGTCTAAGTTAC 59.624 40.741 20.51 0.00 45.20 2.50
2430 2762 8.407064 GTGCATATGACACTAGTCTAAGTTACT 58.593 37.037 17.63 0.00 45.20 2.24
2431 2763 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
2432 2764 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
2436 2768 8.558973 TGACACTAGTCTAAGTTACTACCTTC 57.441 38.462 0.00 0.00 45.20 3.46
2437 2769 8.159447 TGACACTAGTCTAAGTTACTACCTTCA 58.841 37.037 0.00 0.00 45.20 3.02
2438 2770 9.176460 GACACTAGTCTAAGTTACTACCTTCAT 57.824 37.037 0.00 0.00 41.64 2.57
2443 2775 7.998580 AGTCTAAGTTACTACCTTCATAGTGC 58.001 38.462 0.00 0.00 36.09 4.40
2444 2776 7.614583 AGTCTAAGTTACTACCTTCATAGTGCA 59.385 37.037 0.00 0.00 36.09 4.57
2445 2777 8.248945 GTCTAAGTTACTACCTTCATAGTGCAA 58.751 37.037 0.00 0.00 36.09 4.08
2446 2778 8.809066 TCTAAGTTACTACCTTCATAGTGCAAA 58.191 33.333 0.00 0.00 36.09 3.68
2447 2779 7.907214 AAGTTACTACCTTCATAGTGCAAAG 57.093 36.000 0.00 0.00 36.09 2.77
2448 2780 7.005709 AGTTACTACCTTCATAGTGCAAAGT 57.994 36.000 0.00 0.00 36.09 2.66
2449 2781 8.130671 AGTTACTACCTTCATAGTGCAAAGTA 57.869 34.615 0.00 0.00 36.09 2.24
2450 2782 8.591072 AGTTACTACCTTCATAGTGCAAAGTAA 58.409 33.333 0.00 0.00 36.09 2.24
2451 2783 8.654215 GTTACTACCTTCATAGTGCAAAGTAAC 58.346 37.037 0.00 0.00 39.37 2.50
2452 2784 6.765403 ACTACCTTCATAGTGCAAAGTAACA 58.235 36.000 0.00 0.00 34.02 2.41
2453 2785 7.394816 ACTACCTTCATAGTGCAAAGTAACAT 58.605 34.615 0.00 0.00 34.02 2.71
2454 2786 8.537016 ACTACCTTCATAGTGCAAAGTAACATA 58.463 33.333 0.00 0.00 34.02 2.29
2455 2787 7.611213 ACCTTCATAGTGCAAAGTAACATAC 57.389 36.000 0.00 0.00 0.00 2.39
2456 2788 7.394816 ACCTTCATAGTGCAAAGTAACATACT 58.605 34.615 0.00 0.00 41.73 2.12
2457 2789 8.537016 ACCTTCATAGTGCAAAGTAACATACTA 58.463 33.333 0.00 0.00 38.26 1.82
2458 2790 9.035607 CCTTCATAGTGCAAAGTAACATACTAG 57.964 37.037 0.00 0.00 38.26 2.57
2459 2791 9.587772 CTTCATAGTGCAAAGTAACATACTAGT 57.412 33.333 0.00 0.00 38.26 2.57
2464 2796 7.893658 AGTGCAAAGTAACATACTAGTAGTGT 58.106 34.615 13.29 3.10 38.26 3.55
2465 2797 8.027771 AGTGCAAAGTAACATACTAGTAGTGTC 58.972 37.037 13.29 3.35 38.26 3.67
2466 2798 7.811236 GTGCAAAGTAACATACTAGTAGTGTCA 59.189 37.037 13.29 0.00 38.26 3.58
2467 2799 8.528643 TGCAAAGTAACATACTAGTAGTGTCAT 58.471 33.333 13.29 0.00 38.26 3.06
2497 2829 9.587772 TGACTTCATTTATTAGCTTGTAGACTC 57.412 33.333 0.00 0.00 0.00 3.36
2498 2830 9.587772 GACTTCATTTATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
2505 2837 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
2506 2838 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
2507 2839 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
2508 2840 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
2509 2841 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
2510 2842 4.808414 TGTAGACTCATCTTGTCTTGGG 57.192 45.455 1.67 0.00 41.45 4.12
2511 2843 4.416516 TGTAGACTCATCTTGTCTTGGGA 58.583 43.478 1.67 0.00 41.45 4.37
2512 2844 4.838423 TGTAGACTCATCTTGTCTTGGGAA 59.162 41.667 1.67 0.00 41.45 3.97
2513 2845 4.278975 AGACTCATCTTGTCTTGGGAAC 57.721 45.455 0.00 0.00 41.45 3.62
2514 2846 3.008485 AGACTCATCTTGTCTTGGGAACC 59.992 47.826 0.00 0.00 41.45 3.62
2515 2847 6.366817 AGACTCATCTTGTCTTGGGAACCG 62.367 50.000 0.00 0.00 44.23 4.44
2527 2859 2.685850 GGGAACCGCTATGTTACAGT 57.314 50.000 0.00 0.00 40.86 3.55
2528 2860 3.806625 GGGAACCGCTATGTTACAGTA 57.193 47.619 0.00 0.00 40.86 2.74
2529 2861 4.127566 GGGAACCGCTATGTTACAGTAA 57.872 45.455 0.00 0.00 40.86 2.24
2530 2862 3.867493 GGGAACCGCTATGTTACAGTAAC 59.133 47.826 15.58 15.58 40.86 2.50
2531 2863 4.621274 GGGAACCGCTATGTTACAGTAACA 60.621 45.833 25.09 25.09 46.55 2.41
2562 2894 8.827177 TGTTACCACTTCTCATTAACTACTTG 57.173 34.615 0.00 0.00 0.00 3.16
2563 2895 7.386848 TGTTACCACTTCTCATTAACTACTTGC 59.613 37.037 0.00 0.00 0.00 4.01
2564 2896 5.246307 ACCACTTCTCATTAACTACTTGCC 58.754 41.667 0.00 0.00 0.00 4.52
2565 2897 5.221843 ACCACTTCTCATTAACTACTTGCCA 60.222 40.000 0.00 0.00 0.00 4.92
2566 2898 5.122396 CCACTTCTCATTAACTACTTGCCAC 59.878 44.000 0.00 0.00 0.00 5.01
2567 2899 4.929808 ACTTCTCATTAACTACTTGCCACG 59.070 41.667 0.00 0.00 0.00 4.94
2568 2900 4.530710 TCTCATTAACTACTTGCCACGT 57.469 40.909 0.00 0.00 0.00 4.49
2569 2901 5.648178 TCTCATTAACTACTTGCCACGTA 57.352 39.130 0.00 0.00 0.00 3.57
2570 2902 6.028146 TCTCATTAACTACTTGCCACGTAA 57.972 37.500 0.00 0.00 0.00 3.18
2572 2904 4.628333 TCATTAACTACTTGCCACGTAAGC 59.372 41.667 2.88 2.88 45.62 3.09
2573 2905 2.536761 AACTACTTGCCACGTAAGCA 57.463 45.000 8.27 8.27 45.62 3.91
2582 2914 4.314740 TGCCACGTAAGCAAAATTTTCT 57.685 36.364 9.80 0.00 45.62 2.52
2583 2915 4.688021 TGCCACGTAAGCAAAATTTTCTT 58.312 34.783 9.80 15.30 45.62 2.52
2584 2916 4.505922 TGCCACGTAAGCAAAATTTTCTTG 59.494 37.500 18.15 5.33 45.62 3.02
2585 2917 4.084589 GCCACGTAAGCAAAATTTTCTTGG 60.085 41.667 18.15 13.18 45.62 3.61
2586 2918 5.285651 CCACGTAAGCAAAATTTTCTTGGA 58.714 37.500 18.15 4.73 45.62 3.53
2587 2919 5.402270 CCACGTAAGCAAAATTTTCTTGGAG 59.598 40.000 18.15 13.50 45.62 3.86
2588 2920 6.205784 CACGTAAGCAAAATTTTCTTGGAGA 58.794 36.000 18.15 4.00 45.62 3.71
2589 2921 6.360681 CACGTAAGCAAAATTTTCTTGGAGAG 59.639 38.462 18.15 10.97 45.62 3.20
2590 2922 5.343325 CGTAAGCAAAATTTTCTTGGAGAGC 59.657 40.000 18.15 10.15 0.00 4.09
2591 2923 3.905784 AGCAAAATTTTCTTGGAGAGCG 58.094 40.909 0.00 0.00 0.00 5.03
2592 2924 2.409715 GCAAAATTTTCTTGGAGAGCGC 59.590 45.455 0.00 0.00 0.00 5.92
2593 2925 3.858503 GCAAAATTTTCTTGGAGAGCGCT 60.859 43.478 11.27 11.27 0.00 5.92
2594 2926 4.615912 GCAAAATTTTCTTGGAGAGCGCTA 60.616 41.667 11.50 0.00 0.00 4.26
2595 2927 5.460646 CAAAATTTTCTTGGAGAGCGCTAA 58.539 37.500 11.50 0.00 0.00 3.09
2596 2928 4.954092 AATTTTCTTGGAGAGCGCTAAG 57.046 40.909 11.50 11.03 0.00 2.18
2597 2929 3.402628 TTTTCTTGGAGAGCGCTAAGT 57.597 42.857 11.50 0.00 0.00 2.24
2598 2930 3.402628 TTTCTTGGAGAGCGCTAAGTT 57.597 42.857 11.50 0.00 0.00 2.66
2599 2931 4.530710 TTTCTTGGAGAGCGCTAAGTTA 57.469 40.909 11.50 0.56 0.00 2.24
2600 2932 3.505464 TCTTGGAGAGCGCTAAGTTAC 57.495 47.619 11.50 0.00 0.00 2.50
2601 2933 3.090037 TCTTGGAGAGCGCTAAGTTACT 58.910 45.455 11.50 0.42 0.00 2.24
2602 2934 4.267536 TCTTGGAGAGCGCTAAGTTACTA 58.732 43.478 11.50 0.00 0.00 1.82
2603 2935 4.335874 TCTTGGAGAGCGCTAAGTTACTAG 59.664 45.833 11.50 3.99 0.00 2.57
2604 2936 2.358267 TGGAGAGCGCTAAGTTACTAGC 59.642 50.000 11.50 0.00 40.83 3.42
2605 2937 2.619646 GGAGAGCGCTAAGTTACTAGCT 59.380 50.000 11.50 0.00 41.86 3.32
2606 2938 3.814283 GGAGAGCGCTAAGTTACTAGCTA 59.186 47.826 11.50 0.00 41.86 3.32
2607 2939 4.275443 GGAGAGCGCTAAGTTACTAGCTAA 59.725 45.833 11.50 0.00 41.86 3.09
2608 2940 5.427036 AGAGCGCTAAGTTACTAGCTAAG 57.573 43.478 11.50 0.00 41.86 2.18
2609 2941 4.883006 AGAGCGCTAAGTTACTAGCTAAGT 59.117 41.667 11.50 0.00 41.86 2.24
2610 2942 5.357596 AGAGCGCTAAGTTACTAGCTAAGTT 59.642 40.000 11.50 0.65 41.86 2.66
2611 2943 6.541641 AGAGCGCTAAGTTACTAGCTAAGTTA 59.458 38.462 11.50 1.74 41.86 2.24
2612 2944 6.493978 AGCGCTAAGTTACTAGCTAAGTTAC 58.506 40.000 8.99 0.17 41.86 2.50
2614 2946 6.632434 GCGCTAAGTTACTAGCTAAGTTACTC 59.368 42.308 0.00 4.09 45.09 2.59
2615 2947 7.131565 CGCTAAGTTACTAGCTAAGTTACTCC 58.868 42.308 12.31 6.59 45.09 3.85
2616 2948 7.424803 GCTAAGTTACTAGCTAAGTTACTCCC 58.575 42.308 12.31 4.68 45.09 4.30
2617 2949 7.067981 GCTAAGTTACTAGCTAAGTTACTCCCA 59.932 40.741 12.31 4.68 45.09 4.37
2618 2950 6.772360 AGTTACTAGCTAAGTTACTCCCAC 57.228 41.667 0.00 0.00 42.93 4.61
2619 2951 6.492274 AGTTACTAGCTAAGTTACTCCCACT 58.508 40.000 0.00 0.00 42.93 4.00
2620 2952 7.637511 AGTTACTAGCTAAGTTACTCCCACTA 58.362 38.462 0.00 0.00 42.93 2.74
2621 2953 8.280807 AGTTACTAGCTAAGTTACTCCCACTAT 58.719 37.037 0.00 0.00 42.93 2.12
2622 2954 6.963083 ACTAGCTAAGTTACTCCCACTATG 57.037 41.667 0.00 0.00 33.35 2.23
2623 2955 6.670617 ACTAGCTAAGTTACTCCCACTATGA 58.329 40.000 0.00 0.00 33.35 2.15
2624 2956 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
2625 2957 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
2626 2958 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
2627 2959 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
2628 2960 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
2629 2961 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
2630 2962 4.079096 AGTTACTCCCACTATGACTAGCCT 60.079 45.833 0.00 0.00 0.00 4.58
2631 2963 5.133999 AGTTACTCCCACTATGACTAGCCTA 59.866 44.000 0.00 0.00 0.00 3.93
2632 2964 4.537945 ACTCCCACTATGACTAGCCTAA 57.462 45.455 0.00 0.00 0.00 2.69
2633 2965 5.081315 ACTCCCACTATGACTAGCCTAAT 57.919 43.478 0.00 0.00 0.00 1.73
2634 2966 5.081032 ACTCCCACTATGACTAGCCTAATC 58.919 45.833 0.00 0.00 0.00 1.75
2635 2967 4.417437 TCCCACTATGACTAGCCTAATCC 58.583 47.826 0.00 0.00 0.00 3.01
2636 2968 4.140782 TCCCACTATGACTAGCCTAATCCA 60.141 45.833 0.00 0.00 0.00 3.41
2637 2969 4.593206 CCCACTATGACTAGCCTAATCCAA 59.407 45.833 0.00 0.00 0.00 3.53
2638 2970 5.279708 CCCACTATGACTAGCCTAATCCAAG 60.280 48.000 0.00 0.00 0.00 3.61
2639 2971 5.233988 CACTATGACTAGCCTAATCCAAGC 58.766 45.833 0.00 0.00 0.00 4.01
2640 2972 5.011533 CACTATGACTAGCCTAATCCAAGCT 59.988 44.000 0.00 0.00 40.66 3.74
2641 2973 4.615588 ATGACTAGCCTAATCCAAGCTC 57.384 45.455 0.00 0.00 38.06 4.09
2642 2974 2.700897 TGACTAGCCTAATCCAAGCTCC 59.299 50.000 0.00 0.00 38.06 4.70
2643 2975 2.037902 GACTAGCCTAATCCAAGCTCCC 59.962 54.545 0.00 0.00 38.06 4.30
2644 2976 1.349357 CTAGCCTAATCCAAGCTCCCC 59.651 57.143 0.00 0.00 38.06 4.81
2645 2977 1.227973 GCCTAATCCAAGCTCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
2646 2978 1.227973 CCTAATCCAAGCTCCCCGC 60.228 63.158 0.00 0.00 39.57 6.13
2647 2979 1.526887 CTAATCCAAGCTCCCCGCA 59.473 57.895 0.00 0.00 42.61 5.69
2648 2980 0.107214 CTAATCCAAGCTCCCCGCAA 60.107 55.000 0.00 0.00 42.61 4.85
2649 2981 0.329931 TAATCCAAGCTCCCCGCAAA 59.670 50.000 0.00 0.00 42.61 3.68
2650 2982 0.541764 AATCCAAGCTCCCCGCAAAA 60.542 50.000 0.00 0.00 42.61 2.44
2651 2983 0.541764 ATCCAAGCTCCCCGCAAAAA 60.542 50.000 0.00 0.00 42.61 1.94
2674 3006 5.932619 AAACAGTTTATAATCCAAGCCCC 57.067 39.130 0.00 0.00 0.00 5.80
2675 3007 3.910989 ACAGTTTATAATCCAAGCCCCC 58.089 45.455 0.00 0.00 0.00 5.40
2676 3008 3.531814 ACAGTTTATAATCCAAGCCCCCT 59.468 43.478 0.00 0.00 0.00 4.79
2677 3009 4.145052 CAGTTTATAATCCAAGCCCCCTC 58.855 47.826 0.00 0.00 0.00 4.30
2678 3010 4.055094 AGTTTATAATCCAAGCCCCCTCT 58.945 43.478 0.00 0.00 0.00 3.69
2679 3011 4.482398 AGTTTATAATCCAAGCCCCCTCTT 59.518 41.667 0.00 0.00 0.00 2.85
2680 3012 4.724279 TTATAATCCAAGCCCCCTCTTC 57.276 45.455 0.00 0.00 0.00 2.87
2681 3013 1.222567 TAATCCAAGCCCCCTCTTCC 58.777 55.000 0.00 0.00 0.00 3.46
2682 3014 0.553612 AATCCAAGCCCCCTCTTCCT 60.554 55.000 0.00 0.00 0.00 3.36
2683 3015 0.553612 ATCCAAGCCCCCTCTTCCTT 60.554 55.000 0.00 0.00 0.00 3.36
2684 3016 0.776080 TCCAAGCCCCCTCTTCCTTT 60.776 55.000 0.00 0.00 0.00 3.11
2685 3017 0.999712 CCAAGCCCCCTCTTCCTTTA 59.000 55.000 0.00 0.00 0.00 1.85
2686 3018 1.357761 CCAAGCCCCCTCTTCCTTTAA 59.642 52.381 0.00 0.00 0.00 1.52
2687 3019 2.447443 CAAGCCCCCTCTTCCTTTAAC 58.553 52.381 0.00 0.00 0.00 2.01
2688 3020 2.041755 CAAGCCCCCTCTTCCTTTAACT 59.958 50.000 0.00 0.00 0.00 2.24
2689 3021 2.359243 AGCCCCCTCTTCCTTTAACTT 58.641 47.619 0.00 0.00 0.00 2.66
2690 3022 2.722458 AGCCCCCTCTTCCTTTAACTTT 59.278 45.455 0.00 0.00 0.00 2.66
2691 3023 2.826128 GCCCCCTCTTCCTTTAACTTTG 59.174 50.000 0.00 0.00 0.00 2.77
2692 3024 3.431415 CCCCCTCTTCCTTTAACTTTGG 58.569 50.000 0.00 0.00 0.00 3.28
2693 3025 2.826128 CCCCTCTTCCTTTAACTTTGGC 59.174 50.000 0.00 0.00 0.00 4.52
2694 3026 3.496331 CCCTCTTCCTTTAACTTTGGCA 58.504 45.455 0.00 0.00 0.00 4.92
2695 3027 3.255888 CCCTCTTCCTTTAACTTTGGCAC 59.744 47.826 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.415206 GCCTTTGTATCAAGTTATCCGAATGTT 60.415 37.037 0.00 0.00 0.00 2.71
115 116 5.515797 AAACAGTGGAAAACCTAGAAAGC 57.484 39.130 0.00 0.00 0.00 3.51
250 272 7.136822 TCATGGGCGCTAGGATTTTATATAT 57.863 36.000 7.64 0.00 0.00 0.86
251 273 6.553953 TCATGGGCGCTAGGATTTTATATA 57.446 37.500 7.64 0.00 0.00 0.86
292 316 2.822255 GTGCCCGCGATTTGCCTA 60.822 61.111 8.23 0.00 42.08 3.93
619 732 3.966665 TCCCAGAAAACAAATGCTTCCTT 59.033 39.130 0.00 0.00 0.00 3.36
727 865 1.517832 CTCAGTCCACCCACCGATC 59.482 63.158 0.00 0.00 0.00 3.69
728 866 2.660064 GCTCAGTCCACCCACCGAT 61.660 63.158 0.00 0.00 0.00 4.18
729 867 3.311110 GCTCAGTCCACCCACCGA 61.311 66.667 0.00 0.00 0.00 4.69
730 868 3.314331 AGCTCAGTCCACCCACCG 61.314 66.667 0.00 0.00 0.00 4.94
731 869 2.348998 CAGCTCAGTCCACCCACC 59.651 66.667 0.00 0.00 0.00 4.61
732 870 2.359230 GCAGCTCAGTCCACCCAC 60.359 66.667 0.00 0.00 0.00 4.61
733 871 4.007644 CGCAGCTCAGTCCACCCA 62.008 66.667 0.00 0.00 0.00 4.51
804 942 1.144057 CTGCACCCAGTCGGTATCC 59.856 63.158 0.00 0.00 46.14 2.59
928 1077 1.329599 GTTTCGAGGTTTGTCGCTTGT 59.670 47.619 0.00 0.00 39.90 3.16
964 1129 1.674962 GATTGATGGTTCCTCTGCTGC 59.325 52.381 0.00 0.00 0.00 5.25
1144 1397 2.044946 AATCGCAGCAACCCCCTC 60.045 61.111 0.00 0.00 0.00 4.30
1292 1554 1.079127 GCGCTGGGTTCTTGCTCTA 60.079 57.895 0.00 0.00 0.00 2.43
1293 1555 2.359230 GCGCTGGGTTCTTGCTCT 60.359 61.111 0.00 0.00 0.00 4.09
1300 1562 2.178235 GGTAATCCGCGCTGGGTTC 61.178 63.158 17.87 10.90 41.41 3.62
1453 1715 0.252103 TCGAAGTAGCCCTTGTCCCT 60.252 55.000 0.00 0.00 32.03 4.20
1709 1971 0.387929 AGAGAGAAACGACACCGCAA 59.612 50.000 0.00 0.00 39.95 4.85
1795 2057 3.905678 ATCTCCGCCGAAGCTCCG 61.906 66.667 0.00 0.00 36.60 4.63
1806 2068 1.890979 GCCAGGCATGACATCTCCG 60.891 63.158 6.55 0.00 0.00 4.63
1858 2125 1.812235 TCTGTCGTTCGTAGCACCTA 58.188 50.000 0.00 0.00 0.00 3.08
1869 2136 4.608948 AGTCTCTGGAAAATCTGTCGTT 57.391 40.909 0.00 0.00 0.00 3.85
1879 2146 5.296151 ACACATCTTGAAGTCTCTGGAAA 57.704 39.130 0.00 0.00 0.00 3.13
1896 2163 1.192146 AGTACCACCAGCCGACACAT 61.192 55.000 0.00 0.00 0.00 3.21
1908 2175 2.406616 CCATGCCGCCAAGTACCAC 61.407 63.158 0.00 0.00 0.00 4.16
1933 2200 1.008194 GCACGTCACGGTCTACACA 60.008 57.895 0.35 0.00 0.00 3.72
1963 2238 3.000819 CCACCACCTCCCTACGCA 61.001 66.667 0.00 0.00 0.00 5.24
1980 2255 4.517815 CACCATGGCGCCCAATGC 62.518 66.667 26.77 0.00 36.95 3.56
2049 2324 0.751277 CAACTGCCACCACTCCAACA 60.751 55.000 0.00 0.00 0.00 3.33
2051 2326 1.152777 CCAACTGCCACCACTCCAA 60.153 57.895 0.00 0.00 0.00 3.53
2073 2348 3.385384 CGCTCTCAGAGGCCACCA 61.385 66.667 5.01 0.00 0.00 4.17
2076 2351 4.074526 GCACGCTCTCAGAGGCCA 62.075 66.667 5.01 0.00 0.00 5.36
2111 2387 0.320374 CAAGCCACTTGTCGGGTCTA 59.680 55.000 0.00 0.00 36.79 2.59
2112 2388 1.071471 CAAGCCACTTGTCGGGTCT 59.929 57.895 0.00 0.00 36.79 3.85
2113 2389 1.966451 CCAAGCCACTTGTCGGGTC 60.966 63.158 6.58 0.00 39.58 4.46
2134 2410 3.767309 ACATCTAAGACCTGAGACCCT 57.233 47.619 0.00 0.00 0.00 4.34
2138 2414 3.632604 CGCCTAACATCTAAGACCTGAGA 59.367 47.826 0.00 0.00 0.00 3.27
2159 2435 2.029073 ACAGACCTCGCAACCACG 59.971 61.111 0.00 0.00 0.00 4.94
2160 2436 1.961277 CCACAGACCTCGCAACCAC 60.961 63.158 0.00 0.00 0.00 4.16
2164 2448 2.829720 ACTTATACCACAGACCTCGCAA 59.170 45.455 0.00 0.00 0.00 4.85
2166 2450 2.223758 GGACTTATACCACAGACCTCGC 60.224 54.545 0.00 0.00 0.00 5.03
2182 2466 4.333417 CCGTCTAGTCCGGGACTT 57.667 61.111 32.91 17.71 40.28 3.01
2274 2606 2.887152 GGGCAGGTAATTTAGGCATCTG 59.113 50.000 0.00 0.00 0.00 2.90
2281 2613 6.533730 TGATCTACATGGGCAGGTAATTTAG 58.466 40.000 0.00 0.00 0.00 1.85
2282 2614 6.508030 TGATCTACATGGGCAGGTAATTTA 57.492 37.500 0.00 0.00 0.00 1.40
2283 2615 5.387113 TGATCTACATGGGCAGGTAATTT 57.613 39.130 0.00 0.00 0.00 1.82
2284 2616 5.387113 TTGATCTACATGGGCAGGTAATT 57.613 39.130 0.00 0.00 0.00 1.40
2285 2617 5.589367 ATTGATCTACATGGGCAGGTAAT 57.411 39.130 0.00 0.00 0.00 1.89
2286 2618 5.387113 AATTGATCTACATGGGCAGGTAA 57.613 39.130 0.00 0.00 0.00 2.85
2287 2619 6.508030 TTAATTGATCTACATGGGCAGGTA 57.492 37.500 0.00 0.00 0.00 3.08
2288 2620 3.959495 AATTGATCTACATGGGCAGGT 57.041 42.857 0.00 0.00 0.00 4.00
2289 2621 6.718454 AGATTTAATTGATCTACATGGGCAGG 59.282 38.462 0.00 0.00 32.27 4.85
2290 2622 7.446319 TCAGATTTAATTGATCTACATGGGCAG 59.554 37.037 0.00 0.00 32.75 4.85
2291 2623 7.229306 GTCAGATTTAATTGATCTACATGGGCA 59.771 37.037 0.00 0.00 32.75 5.36
2292 2624 7.446625 AGTCAGATTTAATTGATCTACATGGGC 59.553 37.037 0.00 0.00 32.75 5.36
2293 2625 8.915057 AGTCAGATTTAATTGATCTACATGGG 57.085 34.615 0.00 0.00 32.75 4.00
2294 2626 9.775854 AGAGTCAGATTTAATTGATCTACATGG 57.224 33.333 0.00 0.00 32.75 3.66
2304 2636 9.578439 GGGAAATTGAAGAGTCAGATTTAATTG 57.422 33.333 0.00 0.00 34.49 2.32
2305 2637 8.462016 CGGGAAATTGAAGAGTCAGATTTAATT 58.538 33.333 0.00 0.00 34.49 1.40
2306 2638 7.415653 GCGGGAAATTGAAGAGTCAGATTTAAT 60.416 37.037 0.00 0.00 34.49 1.40
2307 2639 6.128007 GCGGGAAATTGAAGAGTCAGATTTAA 60.128 38.462 0.00 0.00 34.49 1.52
2308 2640 5.354234 GCGGGAAATTGAAGAGTCAGATTTA 59.646 40.000 0.00 0.00 34.49 1.40
2309 2641 4.156739 GCGGGAAATTGAAGAGTCAGATTT 59.843 41.667 0.00 0.00 34.49 2.17
2310 2642 3.691609 GCGGGAAATTGAAGAGTCAGATT 59.308 43.478 0.00 0.00 34.49 2.40
2311 2643 3.274288 GCGGGAAATTGAAGAGTCAGAT 58.726 45.455 0.00 0.00 34.49 2.90
2312 2644 2.699954 GCGGGAAATTGAAGAGTCAGA 58.300 47.619 0.00 0.00 34.49 3.27
2313 2645 1.394917 CGCGGGAAATTGAAGAGTCAG 59.605 52.381 0.00 0.00 34.49 3.51
2314 2646 1.438651 CGCGGGAAATTGAAGAGTCA 58.561 50.000 0.00 0.00 0.00 3.41
2315 2647 0.727398 CCGCGGGAAATTGAAGAGTC 59.273 55.000 20.10 0.00 0.00 3.36
2316 2648 0.676782 CCCGCGGGAAATTGAAGAGT 60.677 55.000 41.82 0.00 37.50 3.24
2317 2649 2.098293 CCCGCGGGAAATTGAAGAG 58.902 57.895 41.82 6.81 37.50 2.85
2318 2650 4.312052 CCCGCGGGAAATTGAAGA 57.688 55.556 41.82 0.00 37.50 2.87
2330 2662 4.326766 CAACAACACTGGCCCGCG 62.327 66.667 0.00 0.00 0.00 6.46
2331 2663 3.216292 ACAACAACACTGGCCCGC 61.216 61.111 0.00 0.00 0.00 6.13
2332 2664 0.816018 TACACAACAACACTGGCCCG 60.816 55.000 0.00 0.00 0.00 6.13
2333 2665 0.666374 GTACACAACAACACTGGCCC 59.334 55.000 0.00 0.00 0.00 5.80
2334 2666 0.306533 CGTACACAACAACACTGGCC 59.693 55.000 0.00 0.00 0.00 5.36
2335 2667 0.316689 GCGTACACAACAACACTGGC 60.317 55.000 0.00 0.00 0.00 4.85
2336 2668 0.042535 CGCGTACACAACAACACTGG 60.043 55.000 0.00 0.00 0.00 4.00
2337 2669 0.042535 CCGCGTACACAACAACACTG 60.043 55.000 4.92 0.00 0.00 3.66
2338 2670 1.768112 GCCGCGTACACAACAACACT 61.768 55.000 4.92 0.00 0.00 3.55
2339 2671 1.368374 GCCGCGTACACAACAACAC 60.368 57.895 4.92 0.00 0.00 3.32
2340 2672 2.535788 GGCCGCGTACACAACAACA 61.536 57.895 4.92 0.00 0.00 3.33
2341 2673 2.250190 GGCCGCGTACACAACAAC 59.750 61.111 4.92 0.00 0.00 3.32
2342 2674 2.203029 TGGCCGCGTACACAACAA 60.203 55.556 4.92 0.00 0.00 2.83
2343 2675 2.663520 CTGGCCGCGTACACAACA 60.664 61.111 4.92 0.00 0.00 3.33
2344 2676 1.778027 AAACTGGCCGCGTACACAAC 61.778 55.000 4.92 0.00 0.00 3.32
2345 2677 0.249784 TAAACTGGCCGCGTACACAA 60.250 50.000 4.92 0.00 0.00 3.33
2346 2678 0.037139 ATAAACTGGCCGCGTACACA 60.037 50.000 4.92 0.00 0.00 3.72
2347 2679 1.925229 TATAAACTGGCCGCGTACAC 58.075 50.000 4.92 0.00 0.00 2.90
2348 2680 2.542597 CTTATAAACTGGCCGCGTACA 58.457 47.619 4.92 2.07 0.00 2.90
2349 2681 1.862827 CCTTATAAACTGGCCGCGTAC 59.137 52.381 4.92 0.00 0.00 3.67
2350 2682 1.807377 GCCTTATAAACTGGCCGCGTA 60.807 52.381 4.92 0.00 40.71 4.42
2351 2683 1.093496 GCCTTATAAACTGGCCGCGT 61.093 55.000 4.92 0.00 40.71 6.01
2352 2684 1.647084 GCCTTATAAACTGGCCGCG 59.353 57.895 0.00 0.00 40.71 6.46
2356 2688 6.647067 CACTATGACTAGCCTTATAAACTGGC 59.353 42.308 6.18 6.18 46.42 4.85
2357 2689 7.015292 TCCACTATGACTAGCCTTATAAACTGG 59.985 40.741 0.00 0.00 0.00 4.00
2358 2690 7.952671 TCCACTATGACTAGCCTTATAAACTG 58.047 38.462 0.00 0.00 0.00 3.16
2359 2691 8.005388 TCTCCACTATGACTAGCCTTATAAACT 58.995 37.037 0.00 0.00 0.00 2.66
2360 2692 8.179509 TCTCCACTATGACTAGCCTTATAAAC 57.820 38.462 0.00 0.00 0.00 2.01
2361 2693 8.005388 ACTCTCCACTATGACTAGCCTTATAAA 58.995 37.037 0.00 0.00 0.00 1.40
2362 2694 7.527796 ACTCTCCACTATGACTAGCCTTATAA 58.472 38.462 0.00 0.00 0.00 0.98
2363 2695 7.092748 ACTCTCCACTATGACTAGCCTTATA 57.907 40.000 0.00 0.00 0.00 0.98
2364 2696 5.959512 ACTCTCCACTATGACTAGCCTTAT 58.040 41.667 0.00 0.00 0.00 1.73
2365 2697 5.390087 ACTCTCCACTATGACTAGCCTTA 57.610 43.478 0.00 0.00 0.00 2.69
2366 2698 4.258457 ACTCTCCACTATGACTAGCCTT 57.742 45.455 0.00 0.00 0.00 4.35
2367 2699 3.963476 ACTCTCCACTATGACTAGCCT 57.037 47.619 0.00 0.00 0.00 4.58
2368 2700 5.134661 AGTTACTCTCCACTATGACTAGCC 58.865 45.833 0.00 0.00 0.00 3.93
2369 2701 6.702716 AAGTTACTCTCCACTATGACTAGC 57.297 41.667 0.00 0.00 0.00 3.42
2370 2702 9.048446 GTCTAAGTTACTCTCCACTATGACTAG 57.952 40.741 0.00 0.00 0.00 2.57
2371 2703 8.770322 AGTCTAAGTTACTCTCCACTATGACTA 58.230 37.037 0.00 0.00 35.61 2.59
2372 2704 7.635648 AGTCTAAGTTACTCTCCACTATGACT 58.364 38.462 0.00 0.00 34.02 3.41
2373 2705 7.868906 AGTCTAAGTTACTCTCCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
2374 2706 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
2375 2707 8.832521 CACTAGTCTAAGTTACTCTCCACTATG 58.167 40.741 0.00 0.00 0.00 2.23
2376 2708 8.550585 ACACTAGTCTAAGTTACTCTCCACTAT 58.449 37.037 0.00 0.00 0.00 2.12
2377 2709 7.915930 ACACTAGTCTAAGTTACTCTCCACTA 58.084 38.462 0.00 0.00 0.00 2.74
2378 2710 6.781943 ACACTAGTCTAAGTTACTCTCCACT 58.218 40.000 0.00 0.00 0.00 4.00
2379 2711 6.183360 CGACACTAGTCTAAGTTACTCTCCAC 60.183 46.154 0.00 0.00 42.73 4.02
2380 2712 5.873712 CGACACTAGTCTAAGTTACTCTCCA 59.126 44.000 0.00 0.00 42.73 3.86
2381 2713 5.874261 ACGACACTAGTCTAAGTTACTCTCC 59.126 44.000 0.00 0.00 42.73 3.71
2382 2714 6.672836 GCACGACACTAGTCTAAGTTACTCTC 60.673 46.154 0.00 0.00 42.73 3.20
2383 2715 5.122082 GCACGACACTAGTCTAAGTTACTCT 59.878 44.000 0.00 0.00 42.73 3.24
2384 2716 5.106791 TGCACGACACTAGTCTAAGTTACTC 60.107 44.000 0.00 0.00 42.73 2.59
2385 2717 4.758674 TGCACGACACTAGTCTAAGTTACT 59.241 41.667 0.00 0.00 42.73 2.24
2386 2718 5.039480 TGCACGACACTAGTCTAAGTTAC 57.961 43.478 0.00 0.00 42.73 2.50
2387 2719 5.892160 ATGCACGACACTAGTCTAAGTTA 57.108 39.130 0.00 0.00 42.73 2.24
2388 2720 4.785511 ATGCACGACACTAGTCTAAGTT 57.214 40.909 0.00 0.00 42.73 2.66
2389 2721 5.589050 TCATATGCACGACACTAGTCTAAGT 59.411 40.000 0.00 0.00 42.73 2.24
2390 2722 5.910166 GTCATATGCACGACACTAGTCTAAG 59.090 44.000 0.00 0.00 42.73 2.18
2391 2723 5.355910 TGTCATATGCACGACACTAGTCTAA 59.644 40.000 10.51 0.00 42.73 2.10
2392 2724 4.879545 TGTCATATGCACGACACTAGTCTA 59.120 41.667 10.51 0.00 42.73 2.59
2393 2725 3.694566 TGTCATATGCACGACACTAGTCT 59.305 43.478 10.51 0.00 42.73 3.24
2394 2726 4.028852 TGTCATATGCACGACACTAGTC 57.971 45.455 10.51 0.00 37.23 2.59
2400 2732 3.694566 AGACTAGTGTCATATGCACGACA 59.305 43.478 18.35 10.51 45.20 4.35
2401 2733 4.294416 AGACTAGTGTCATATGCACGAC 57.706 45.455 18.35 5.93 45.20 4.34
2402 2734 5.589050 ACTTAGACTAGTGTCATATGCACGA 59.411 40.000 18.35 14.56 45.20 4.35
2403 2735 5.822278 ACTTAGACTAGTGTCATATGCACG 58.178 41.667 18.35 11.42 45.20 5.34
2404 2736 8.407064 AGTAACTTAGACTAGTGTCATATGCAC 58.593 37.037 17.36 17.36 45.20 4.57
2405 2737 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
2406 2738 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
2410 2742 9.176460 GAAGGTAGTAACTTAGACTAGTGTCAT 57.824 37.037 0.00 0.00 45.20 3.06
2411 2743 8.159447 TGAAGGTAGTAACTTAGACTAGTGTCA 58.841 37.037 0.00 0.00 45.20 3.58
2412 2744 8.558973 TGAAGGTAGTAACTTAGACTAGTGTC 57.441 38.462 0.00 0.00 43.22 3.67
2417 2749 9.118300 GCACTATGAAGGTAGTAACTTAGACTA 57.882 37.037 0.00 0.00 33.29 2.59
2418 2750 7.614583 TGCACTATGAAGGTAGTAACTTAGACT 59.385 37.037 0.00 0.00 33.29 3.24
2419 2751 7.769220 TGCACTATGAAGGTAGTAACTTAGAC 58.231 38.462 0.00 0.00 33.29 2.59
2420 2752 7.949690 TGCACTATGAAGGTAGTAACTTAGA 57.050 36.000 0.00 0.00 33.29 2.10
2421 2753 8.997621 TTTGCACTATGAAGGTAGTAACTTAG 57.002 34.615 0.00 0.00 33.29 2.18
2422 2754 8.591072 ACTTTGCACTATGAAGGTAGTAACTTA 58.409 33.333 0.00 0.00 33.29 2.24
2423 2755 7.450903 ACTTTGCACTATGAAGGTAGTAACTT 58.549 34.615 0.00 0.00 33.29 2.66
2424 2756 7.005709 ACTTTGCACTATGAAGGTAGTAACT 57.994 36.000 0.00 0.00 33.29 2.24
2425 2757 8.654215 GTTACTTTGCACTATGAAGGTAGTAAC 58.346 37.037 0.00 0.00 38.55 2.50
2426 2758 8.369424 TGTTACTTTGCACTATGAAGGTAGTAA 58.631 33.333 0.00 0.00 33.29 2.24
2427 2759 7.898918 TGTTACTTTGCACTATGAAGGTAGTA 58.101 34.615 0.00 0.00 33.29 1.82
2428 2760 6.765403 TGTTACTTTGCACTATGAAGGTAGT 58.235 36.000 0.00 0.00 35.34 2.73
2429 2761 7.849804 ATGTTACTTTGCACTATGAAGGTAG 57.150 36.000 0.00 0.00 0.00 3.18
2430 2762 8.537016 AGTATGTTACTTTGCACTATGAAGGTA 58.463 33.333 0.00 0.00 34.86 3.08
2431 2763 7.394816 AGTATGTTACTTTGCACTATGAAGGT 58.605 34.615 0.00 0.00 34.86 3.50
2432 2764 7.849804 AGTATGTTACTTTGCACTATGAAGG 57.150 36.000 0.00 0.00 34.86 3.46
2433 2765 9.587772 ACTAGTATGTTACTTTGCACTATGAAG 57.412 33.333 0.00 0.00 40.14 3.02
2438 2770 9.017509 ACACTACTAGTATGTTACTTTGCACTA 57.982 33.333 2.33 0.00 40.14 2.74
2439 2771 7.893658 ACACTACTAGTATGTTACTTTGCACT 58.106 34.615 2.33 0.00 40.14 4.40
2440 2772 7.811236 TGACACTACTAGTATGTTACTTTGCAC 59.189 37.037 14.92 4.84 40.14 4.57
2441 2773 7.888424 TGACACTACTAGTATGTTACTTTGCA 58.112 34.615 14.92 0.00 40.14 4.08
2442 2774 8.928270 ATGACACTACTAGTATGTTACTTTGC 57.072 34.615 14.92 5.78 40.14 3.68
2471 2803 9.587772 GAGTCTACAAGCTAATAAATGAAGTCA 57.412 33.333 0.00 0.00 0.00 3.41
2472 2804 9.587772 TGAGTCTACAAGCTAATAAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
2479 2811 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
2480 2812 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
2481 2813 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
2482 2814 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
2483 2815 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
2484 2816 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
2485 2817 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
2486 2818 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
2487 2819 5.047021 TCCCAAGACAAGATGAGTCTACAAG 60.047 44.000 0.00 0.00 45.11 3.16
2488 2820 4.838423 TCCCAAGACAAGATGAGTCTACAA 59.162 41.667 0.00 0.00 45.11 2.41
2489 2821 4.416516 TCCCAAGACAAGATGAGTCTACA 58.583 43.478 0.00 0.00 45.11 2.74
2490 2822 5.172205 GTTCCCAAGACAAGATGAGTCTAC 58.828 45.833 0.00 0.00 45.11 2.59
2491 2823 4.223032 GGTTCCCAAGACAAGATGAGTCTA 59.777 45.833 0.00 0.00 45.11 2.59
2493 2825 3.339141 GGTTCCCAAGACAAGATGAGTC 58.661 50.000 0.00 0.00 36.26 3.36
2494 2826 2.289694 CGGTTCCCAAGACAAGATGAGT 60.290 50.000 0.00 0.00 0.00 3.41
2495 2827 2.350522 CGGTTCCCAAGACAAGATGAG 58.649 52.381 0.00 0.00 0.00 2.90
2496 2828 1.610624 GCGGTTCCCAAGACAAGATGA 60.611 52.381 0.00 0.00 0.00 2.92
2497 2829 0.804989 GCGGTTCCCAAGACAAGATG 59.195 55.000 0.00 0.00 0.00 2.90
2498 2830 0.693049 AGCGGTTCCCAAGACAAGAT 59.307 50.000 0.00 0.00 0.00 2.40
2499 2831 1.344065 TAGCGGTTCCCAAGACAAGA 58.656 50.000 0.00 0.00 0.00 3.02
2500 2832 2.009774 CATAGCGGTTCCCAAGACAAG 58.990 52.381 0.00 0.00 0.00 3.16
2501 2833 1.349688 ACATAGCGGTTCCCAAGACAA 59.650 47.619 0.00 0.00 0.00 3.18
2502 2834 0.981183 ACATAGCGGTTCCCAAGACA 59.019 50.000 0.00 0.00 0.00 3.41
2503 2835 2.109425 AACATAGCGGTTCCCAAGAC 57.891 50.000 0.00 0.00 0.00 3.01
2504 2836 2.568062 TGTAACATAGCGGTTCCCAAGA 59.432 45.455 0.00 0.00 32.29 3.02
2505 2837 2.936498 CTGTAACATAGCGGTTCCCAAG 59.064 50.000 0.00 0.00 32.29 3.61
2506 2838 2.303600 ACTGTAACATAGCGGTTCCCAA 59.696 45.455 0.00 0.00 32.29 4.12
2507 2839 1.903860 ACTGTAACATAGCGGTTCCCA 59.096 47.619 0.00 0.00 32.29 4.37
2508 2840 2.685850 ACTGTAACATAGCGGTTCCC 57.314 50.000 0.00 0.00 32.29 3.97
2509 2841 4.497300 TGTTACTGTAACATAGCGGTTCC 58.503 43.478 25.14 0.31 43.23 3.62
2538 2870 7.148457 GGCAAGTAGTTAATGAGAAGTGGTAAC 60.148 40.741 0.00 0.00 0.00 2.50
2539 2871 6.877322 GGCAAGTAGTTAATGAGAAGTGGTAA 59.123 38.462 0.00 0.00 0.00 2.85
2540 2872 6.014070 TGGCAAGTAGTTAATGAGAAGTGGTA 60.014 38.462 0.00 0.00 0.00 3.25
2541 2873 5.221843 TGGCAAGTAGTTAATGAGAAGTGGT 60.222 40.000 0.00 0.00 0.00 4.16
2542 2874 5.122396 GTGGCAAGTAGTTAATGAGAAGTGG 59.878 44.000 0.00 0.00 0.00 4.00
2543 2875 5.163953 CGTGGCAAGTAGTTAATGAGAAGTG 60.164 44.000 0.00 0.00 0.00 3.16
2544 2876 4.929808 CGTGGCAAGTAGTTAATGAGAAGT 59.070 41.667 0.00 0.00 0.00 3.01
2545 2877 4.929808 ACGTGGCAAGTAGTTAATGAGAAG 59.070 41.667 3.68 0.00 0.00 2.85
2546 2878 4.890088 ACGTGGCAAGTAGTTAATGAGAA 58.110 39.130 3.68 0.00 0.00 2.87
2547 2879 4.530710 ACGTGGCAAGTAGTTAATGAGA 57.469 40.909 3.68 0.00 0.00 3.27
2548 2880 5.220416 GCTTACGTGGCAAGTAGTTAATGAG 60.220 44.000 12.84 7.44 0.00 2.90
2549 2881 4.628333 GCTTACGTGGCAAGTAGTTAATGA 59.372 41.667 12.84 0.00 0.00 2.57
2550 2882 4.390603 TGCTTACGTGGCAAGTAGTTAATG 59.609 41.667 12.84 0.00 36.71 1.90
2551 2883 4.571919 TGCTTACGTGGCAAGTAGTTAAT 58.428 39.130 12.84 0.00 36.71 1.40
2552 2884 3.992643 TGCTTACGTGGCAAGTAGTTAA 58.007 40.909 12.84 0.33 36.71 2.01
2553 2885 3.663995 TGCTTACGTGGCAAGTAGTTA 57.336 42.857 12.84 0.00 36.71 2.24
2554 2886 2.536761 TGCTTACGTGGCAAGTAGTT 57.463 45.000 12.84 0.00 36.71 2.24
2555 2887 2.536761 TTGCTTACGTGGCAAGTAGT 57.463 45.000 21.09 2.80 43.50 2.73
2560 2892 4.688021 AGAAAATTTTGCTTACGTGGCAA 58.312 34.783 21.09 21.09 46.12 4.52
2561 2893 4.314740 AGAAAATTTTGCTTACGTGGCA 57.685 36.364 8.47 12.76 37.97 4.92
2562 2894 4.084589 CCAAGAAAATTTTGCTTACGTGGC 60.085 41.667 8.47 3.00 0.00 5.01
2563 2895 5.285651 TCCAAGAAAATTTTGCTTACGTGG 58.714 37.500 8.47 10.97 0.00 4.94
2564 2896 6.205784 TCTCCAAGAAAATTTTGCTTACGTG 58.794 36.000 8.47 2.19 0.00 4.49
2565 2897 6.385649 TCTCCAAGAAAATTTTGCTTACGT 57.614 33.333 8.47 0.00 0.00 3.57
2566 2898 5.343325 GCTCTCCAAGAAAATTTTGCTTACG 59.657 40.000 8.47 5.84 0.00 3.18
2567 2899 5.343325 CGCTCTCCAAGAAAATTTTGCTTAC 59.657 40.000 8.47 0.00 0.00 2.34
2568 2900 5.460646 CGCTCTCCAAGAAAATTTTGCTTA 58.539 37.500 8.47 0.00 0.00 3.09
2569 2901 4.301628 CGCTCTCCAAGAAAATTTTGCTT 58.698 39.130 8.47 8.67 0.00 3.91
2570 2902 3.858503 GCGCTCTCCAAGAAAATTTTGCT 60.859 43.478 8.47 2.82 0.00 3.91
2571 2903 2.409715 GCGCTCTCCAAGAAAATTTTGC 59.590 45.455 8.47 1.96 0.00 3.68
2572 2904 3.905784 AGCGCTCTCCAAGAAAATTTTG 58.094 40.909 2.64 0.00 0.00 2.44
2573 2905 5.241728 ACTTAGCGCTCTCCAAGAAAATTTT 59.758 36.000 21.37 2.28 0.00 1.82
2574 2906 4.762251 ACTTAGCGCTCTCCAAGAAAATTT 59.238 37.500 21.37 0.00 0.00 1.82
2575 2907 4.327680 ACTTAGCGCTCTCCAAGAAAATT 58.672 39.130 21.37 0.00 0.00 1.82
2576 2908 3.944087 ACTTAGCGCTCTCCAAGAAAAT 58.056 40.909 21.37 0.00 0.00 1.82
2577 2909 3.402628 ACTTAGCGCTCTCCAAGAAAA 57.597 42.857 21.37 4.17 0.00 2.29
2578 2910 3.402628 AACTTAGCGCTCTCCAAGAAA 57.597 42.857 21.37 4.87 0.00 2.52
2579 2911 3.510360 AGTAACTTAGCGCTCTCCAAGAA 59.490 43.478 21.37 5.58 0.00 2.52
2580 2912 3.090037 AGTAACTTAGCGCTCTCCAAGA 58.910 45.455 21.37 0.00 0.00 3.02
2581 2913 3.512033 AGTAACTTAGCGCTCTCCAAG 57.488 47.619 16.34 15.23 0.00 3.61
2582 2914 3.181489 GCTAGTAACTTAGCGCTCTCCAA 60.181 47.826 16.34 0.40 36.97 3.53
2583 2915 2.358267 GCTAGTAACTTAGCGCTCTCCA 59.642 50.000 16.34 0.00 36.97 3.86
2584 2916 3.002708 GCTAGTAACTTAGCGCTCTCC 57.997 52.381 16.34 0.00 36.97 3.71
2591 2923 7.067981 TGGGAGTAACTTAGCTAGTAACTTAGC 59.932 40.741 0.00 0.00 45.05 3.09
2592 2924 8.404765 GTGGGAGTAACTTAGCTAGTAACTTAG 58.595 40.741 0.00 0.00 35.54 2.18
2593 2925 8.112183 AGTGGGAGTAACTTAGCTAGTAACTTA 58.888 37.037 0.00 0.00 35.54 2.24
2594 2926 6.952938 AGTGGGAGTAACTTAGCTAGTAACTT 59.047 38.462 0.00 0.00 35.54 2.66
2595 2927 6.492274 AGTGGGAGTAACTTAGCTAGTAACT 58.508 40.000 0.00 0.00 35.54 2.24
2596 2928 6.772360 AGTGGGAGTAACTTAGCTAGTAAC 57.228 41.667 0.00 0.00 35.54 2.50
2597 2929 8.277197 TCATAGTGGGAGTAACTTAGCTAGTAA 58.723 37.037 0.00 0.00 35.54 2.24
2598 2930 7.718753 GTCATAGTGGGAGTAACTTAGCTAGTA 59.281 40.741 0.00 0.00 35.54 1.82
2599 2931 6.546772 GTCATAGTGGGAGTAACTTAGCTAGT 59.453 42.308 0.00 0.00 39.32 2.57
2600 2932 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
2601 2933 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
2602 2934 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
2603 2935 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
2604 2936 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
2605 2937 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
2606 2938 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
2607 2939 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
2608 2940 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
2609 2941 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
2610 2942 5.658198 TTAGGCTAGTCATAGTGGGAGTA 57.342 43.478 0.00 0.00 0.00 2.59
2611 2943 4.537945 TTAGGCTAGTCATAGTGGGAGT 57.462 45.455 0.00 0.00 0.00 3.85
2612 2944 4.464597 GGATTAGGCTAGTCATAGTGGGAG 59.535 50.000 17.44 0.00 0.00 4.30
2613 2945 4.140782 TGGATTAGGCTAGTCATAGTGGGA 60.141 45.833 17.44 0.00 0.00 4.37
2614 2946 4.160329 TGGATTAGGCTAGTCATAGTGGG 58.840 47.826 17.44 0.00 0.00 4.61
2615 2947 5.788450 CTTGGATTAGGCTAGTCATAGTGG 58.212 45.833 17.44 0.06 0.00 4.00
2616 2948 5.011533 AGCTTGGATTAGGCTAGTCATAGTG 59.988 44.000 17.44 5.29 40.35 2.74
2617 2949 5.151454 AGCTTGGATTAGGCTAGTCATAGT 58.849 41.667 17.44 4.14 40.35 2.12
2618 2950 5.337169 GGAGCTTGGATTAGGCTAGTCATAG 60.337 48.000 17.44 13.84 42.47 2.23
2619 2951 4.528596 GGAGCTTGGATTAGGCTAGTCATA 59.471 45.833 17.44 4.59 42.47 2.15
2620 2952 3.326297 GGAGCTTGGATTAGGCTAGTCAT 59.674 47.826 17.44 0.00 42.47 3.06
2621 2953 2.700897 GGAGCTTGGATTAGGCTAGTCA 59.299 50.000 17.44 4.72 42.47 3.41
2622 2954 2.037902 GGGAGCTTGGATTAGGCTAGTC 59.962 54.545 8.42 8.42 42.47 2.59
2623 2955 2.050918 GGGAGCTTGGATTAGGCTAGT 58.949 52.381 0.00 0.00 42.47 2.57
2624 2956 1.349357 GGGGAGCTTGGATTAGGCTAG 59.651 57.143 0.00 0.00 42.47 3.42
2625 2957 1.435256 GGGGAGCTTGGATTAGGCTA 58.565 55.000 0.00 0.00 42.47 3.93
2626 2958 1.700042 CGGGGAGCTTGGATTAGGCT 61.700 60.000 0.00 0.00 45.49 4.58
2627 2959 1.227973 CGGGGAGCTTGGATTAGGC 60.228 63.158 0.00 0.00 0.00 3.93
2628 2960 1.227973 GCGGGGAGCTTGGATTAGG 60.228 63.158 0.00 0.00 44.04 2.69
2629 2961 4.464262 GCGGGGAGCTTGGATTAG 57.536 61.111 0.00 0.00 44.04 1.73
2650 2982 6.296202 GGGGGCTTGGATTATAAACTGTTTTT 60.296 38.462 11.48 6.28 0.00 1.94
2651 2983 5.188948 GGGGGCTTGGATTATAAACTGTTTT 59.811 40.000 11.48 2.60 0.00 2.43
2652 2984 4.714802 GGGGGCTTGGATTATAAACTGTTT 59.285 41.667 10.98 10.98 0.00 2.83
2653 2985 4.016572 AGGGGGCTTGGATTATAAACTGTT 60.017 41.667 0.00 0.00 0.00 3.16
2654 2986 3.531814 AGGGGGCTTGGATTATAAACTGT 59.468 43.478 0.00 0.00 0.00 3.55
2655 2987 4.141158 AGAGGGGGCTTGGATTATAAACTG 60.141 45.833 0.00 0.00 0.00 3.16
2656 2988 4.055094 AGAGGGGGCTTGGATTATAAACT 58.945 43.478 0.00 0.00 0.00 2.66
2657 2989 4.455070 AGAGGGGGCTTGGATTATAAAC 57.545 45.455 0.00 0.00 0.00 2.01
2658 2990 4.141018 GGAAGAGGGGGCTTGGATTATAAA 60.141 45.833 0.00 0.00 0.00 1.40
2659 2991 3.397955 GGAAGAGGGGGCTTGGATTATAA 59.602 47.826 0.00 0.00 0.00 0.98
2660 2992 2.986728 GGAAGAGGGGGCTTGGATTATA 59.013 50.000 0.00 0.00 0.00 0.98
2661 2993 1.783365 GGAAGAGGGGGCTTGGATTAT 59.217 52.381 0.00 0.00 0.00 1.28
2662 2994 1.222567 GGAAGAGGGGGCTTGGATTA 58.777 55.000 0.00 0.00 0.00 1.75
2663 2995 0.553612 AGGAAGAGGGGGCTTGGATT 60.554 55.000 0.00 0.00 0.00 3.01
2664 2996 0.553612 AAGGAAGAGGGGGCTTGGAT 60.554 55.000 0.00 0.00 0.00 3.41
2665 2997 0.776080 AAAGGAAGAGGGGGCTTGGA 60.776 55.000 0.00 0.00 0.00 3.53
2666 2998 0.999712 TAAAGGAAGAGGGGGCTTGG 59.000 55.000 0.00 0.00 0.00 3.61
2667 2999 2.041755 AGTTAAAGGAAGAGGGGGCTTG 59.958 50.000 0.00 0.00 0.00 4.01
2668 3000 2.359243 AGTTAAAGGAAGAGGGGGCTT 58.641 47.619 0.00 0.00 0.00 4.35
2669 3001 2.061264 AGTTAAAGGAAGAGGGGGCT 57.939 50.000 0.00 0.00 0.00 5.19
2670 3002 2.826128 CAAAGTTAAAGGAAGAGGGGGC 59.174 50.000 0.00 0.00 0.00 5.80
2671 3003 3.431415 CCAAAGTTAAAGGAAGAGGGGG 58.569 50.000 0.00 0.00 0.00 5.40
2672 3004 2.826128 GCCAAAGTTAAAGGAAGAGGGG 59.174 50.000 0.00 0.00 0.00 4.79
2673 3005 3.255888 GTGCCAAAGTTAAAGGAAGAGGG 59.744 47.826 0.00 0.00 0.00 4.30
2674 3006 4.505313 GTGCCAAAGTTAAAGGAAGAGG 57.495 45.455 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.