Multiple sequence alignment - TraesCS7A01G047700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G047700 chr7A 100.000 2393 0 0 1 2393 21608042 21610434 0.000000e+00 4420.0
1 TraesCS7A01G047700 chr7A 95.745 2068 57 21 1 2037 22016680 22018747 0.000000e+00 3302.0
2 TraesCS7A01G047700 chr7A 85.993 614 78 5 1279 1885 21958334 21957722 0.000000e+00 651.0
3 TraesCS7A01G047700 chr7A 99.405 336 2 0 2036 2371 22020185 22020520 6.950000e-171 610.0
4 TraesCS7A01G047700 chr7A 85.838 579 75 4 1279 1850 21711936 21711358 2.500000e-170 608.0
5 TraesCS7A01G047700 chr7A 84.644 534 63 13 1279 1805 21985441 21984920 5.610000e-142 514.0
6 TraesCS7A01G047700 chr7A 85.532 470 59 4 1381 1841 22635774 22635305 1.580000e-132 483.0
7 TraesCS7A01G047700 chr7A 100.000 242 0 0 2693 2934 21610734 21610975 5.770000e-122 448.0
8 TraesCS7A01G047700 chr7A 91.882 271 15 2 585 848 13806644 13806914 3.570000e-99 372.0
9 TraesCS7A01G047700 chr7A 92.667 150 3 2 2792 2934 22020743 22020891 2.960000e-50 209.0
10 TraesCS7A01G047700 chr7A 86.022 186 6 9 875 1048 21958688 21958511 6.460000e-42 182.0
11 TraesCS7A01G047700 chr7A 86.550 171 7 7 890 1048 21712279 21712113 1.080000e-39 174.0
12 TraesCS7A01G047700 chr7A 84.021 194 18 8 2693 2886 682991242 682991422 1.080000e-39 174.0
13 TraesCS7A01G047700 chr7A 85.965 171 8 7 890 1048 21985781 21985615 5.030000e-38 169.0
14 TraesCS7A01G047700 chr7A 79.623 265 28 20 2128 2381 21957468 21957219 1.810000e-37 167.0
15 TraesCS7A01G047700 chr7A 84.409 186 9 9 875 1048 21596980 21596803 6.510000e-37 165.0
16 TraesCS7A01G047700 chr7A 93.519 108 5 2 2780 2886 62477524 62477630 3.030000e-35 159.0
17 TraesCS7A01G047700 chr7D 94.892 1018 38 8 1381 2393 21852462 21851454 0.000000e+00 1580.0
18 TraesCS7A01G047700 chr7D 82.035 462 76 6 1381 1841 21898754 21898299 1.280000e-103 387.0
19 TraesCS7A01G047700 chr7D 86.154 195 12 6 2693 2887 433726808 433726629 2.310000e-46 196.0
20 TraesCS7A01G047700 chr7D 93.277 119 8 0 624 742 575728836 575728954 3.010000e-40 176.0
21 TraesCS7A01G047700 chr7D 83.673 196 8 12 869 1048 21121998 21122185 2.340000e-36 163.0
22 TraesCS7A01G047700 chr7D 84.211 190 6 12 875 1048 21485611 21485430 2.340000e-36 163.0
23 TraesCS7A01G047700 chr7D 96.154 78 3 0 1189 1266 21620181 21620104 8.530000e-26 128.0
24 TraesCS7A01G047700 chr7D 75.943 212 32 10 953 1149 21256821 21257028 1.120000e-14 91.6
25 TraesCS7A01G047700 chr7D 97.500 40 1 0 2885 2924 21851413 21851374 5.250000e-08 69.4
26 TraesCS7A01G047700 chr4A 86.656 652 80 4 1241 1885 669044341 669044992 0.000000e+00 715.0
27 TraesCS7A01G047700 chr4A 84.452 566 75 7 1241 1802 712734434 712734990 1.990000e-151 545.0
28 TraesCS7A01G047700 chr4A 83.039 566 83 7 1241 1802 712765092 712765648 4.370000e-138 501.0
29 TraesCS7A01G047700 chr4A 77.083 480 87 17 1361 1830 704392418 704391952 3.750000e-64 255.0
30 TraesCS7A01G047700 chr4A 79.134 254 23 22 2133 2381 669045247 669045475 6.550000e-32 148.0
31 TraesCS7A01G047700 chr4A 80.412 194 17 12 844 1027 712596477 712596659 8.530000e-26 128.0
32 TraesCS7A01G047700 chr4A 95.775 71 3 0 1189 1259 712596805 712596875 6.640000e-22 115.0
33 TraesCS7A01G047700 chr4A 100.000 32 0 0 890 921 712224255 712224286 3.160000e-05 60.2
34 TraesCS7A01G047700 chr4A 100.000 32 0 0 890 921 712365144 712365113 3.160000e-05 60.2
35 TraesCS7A01G047700 chr5D 85.897 468 51 12 1 463 264895249 264895706 4.400000e-133 484.0
36 TraesCS7A01G047700 chr5D 94.737 266 12 1 585 848 391056783 391057048 2.100000e-111 412.0
37 TraesCS7A01G047700 chr6D 82.732 527 65 20 1 517 320234847 320235357 2.070000e-121 446.0
38 TraesCS7A01G047700 chr6D 82.443 524 53 19 12 517 361228153 361227651 3.500000e-114 422.0
39 TraesCS7A01G047700 chr6D 88.718 195 15 7 2693 2886 472448809 472448997 6.320000e-57 231.0
40 TraesCS7A01G047700 chr4D 94.361 266 13 1 585 848 42332911 42333176 9.790000e-110 407.0
41 TraesCS7A01G047700 chr4D 79.379 451 73 15 12 456 474446241 474445805 1.710000e-77 300.0
42 TraesCS7A01G047700 chr4D 82.812 192 18 5 2693 2884 18969613 18969789 1.090000e-34 158.0
43 TraesCS7A01G047700 chr3B 80.784 536 68 17 2 520 166558979 166558462 1.280000e-103 387.0
44 TraesCS7A01G047700 chr2D 80.488 533 68 24 1 517 620680930 620681442 2.760000e-100 375.0
45 TraesCS7A01G047700 chr2D 82.110 436 54 17 1 430 74767025 74767442 4.650000e-93 351.0
46 TraesCS7A01G047700 chr1A 91.882 271 15 2 585 848 529660522 529660792 3.570000e-99 372.0
47 TraesCS7A01G047700 chr2B 79.925 533 73 15 1 517 411500991 411501505 7.730000e-96 361.0
48 TraesCS7A01G047700 chr2B 81.152 191 19 7 2693 2883 483548702 483548875 1.420000e-28 137.0
49 TraesCS7A01G047700 chr5A 90.809 272 17 3 585 848 704533646 704533917 1.000000e-94 357.0
50 TraesCS7A01G047700 chr5A 85.128 195 11 7 2693 2887 330283727 330283903 1.800000e-42 183.0
51 TraesCS7A01G047700 chr5A 83.417 199 24 7 2694 2885 562026277 562026473 3.010000e-40 176.0
52 TraesCS7A01G047700 chr6B 85.609 271 30 3 585 848 534232631 534232899 2.880000e-70 276.0
53 TraesCS7A01G047700 chr6A 86.082 194 16 5 2693 2886 141298361 141298543 6.410000e-47 198.0
54 TraesCS7A01G047700 chr5B 85.567 194 16 6 2693 2886 355402682 355402863 2.980000e-45 193.0
55 TraesCS7A01G047700 chr5B 83.505 194 16 5 2693 2886 248778996 248779173 1.810000e-37 167.0
56 TraesCS7A01G047700 chr1B 85.427 199 14 6 2693 2891 610008892 610008709 2.980000e-45 193.0
57 TraesCS7A01G047700 chr2A 85.427 199 12 8 2693 2891 41459659 41459478 1.070000e-44 191.0
58 TraesCS7A01G047700 chr2A 85.641 195 10 7 2693 2887 85219538 85219362 3.860000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G047700 chr7A 21608042 21610975 2933 False 2434.000000 4420 100.000000 1 2934 2 chr7A.!!$F4 2933
1 TraesCS7A01G047700 chr7A 22016680 22020891 4211 False 1373.666667 3302 95.939000 1 2934 3 chr7A.!!$F5 2933
2 TraesCS7A01G047700 chr7A 21711358 21712279 921 True 391.000000 608 86.194000 890 1850 2 chr7A.!!$R3 960
3 TraesCS7A01G047700 chr7A 21984920 21985781 861 True 341.500000 514 85.304500 890 1805 2 chr7A.!!$R5 915
4 TraesCS7A01G047700 chr7A 21957219 21958688 1469 True 333.333333 651 83.879333 875 2381 3 chr7A.!!$R4 1506
5 TraesCS7A01G047700 chr7D 21851374 21852462 1088 True 824.700000 1580 96.196000 1381 2924 2 chr7D.!!$R5 1543
6 TraesCS7A01G047700 chr4A 712734434 712734990 556 False 545.000000 545 84.452000 1241 1802 1 chr4A.!!$F2 561
7 TraesCS7A01G047700 chr4A 712765092 712765648 556 False 501.000000 501 83.039000 1241 1802 1 chr4A.!!$F3 561
8 TraesCS7A01G047700 chr4A 669044341 669045475 1134 False 431.500000 715 82.895000 1241 2381 2 chr4A.!!$F4 1140
9 TraesCS7A01G047700 chr6D 320234847 320235357 510 False 446.000000 446 82.732000 1 517 1 chr6D.!!$F1 516
10 TraesCS7A01G047700 chr6D 361227651 361228153 502 True 422.000000 422 82.443000 12 517 1 chr6D.!!$R1 505
11 TraesCS7A01G047700 chr3B 166558462 166558979 517 True 387.000000 387 80.784000 2 520 1 chr3B.!!$R1 518
12 TraesCS7A01G047700 chr2D 620680930 620681442 512 False 375.000000 375 80.488000 1 517 1 chr2D.!!$F2 516
13 TraesCS7A01G047700 chr2B 411500991 411501505 514 False 361.000000 361 79.925000 1 517 1 chr2B.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 960 0.90723 ACTGGGTCCAGAAGAGGCTC 60.907 60.0 22.46 6.34 46.3 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2744 4343 0.333312 TTTCAAGTGTGGTGTGGGGT 59.667 50.0 0.0 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 183 2.223994 GGAGGAGCCGTATACTTGTTCC 60.224 54.545 13.75 13.75 0.00 3.62
417 434 2.296073 TTATTTCAGCCCAAACCGGT 57.704 45.000 0.00 0.00 0.00 5.28
521 542 2.289072 GCGGCTGGAGATGCTCTTATAA 60.289 50.000 0.00 0.00 0.00 0.98
625 646 6.464465 CCTCTAATGAATAAGGACCGTCCATT 60.464 42.308 19.95 11.16 39.61 3.16
649 670 1.626686 AAATCAAACGGCCATGACCA 58.373 45.000 2.24 0.00 0.00 4.02
671 692 1.339438 CCTGTACTGCTGCAATCAGGT 60.339 52.381 25.50 14.74 40.65 4.00
695 716 4.970662 ACAACATGGCAAGCAGTATTAG 57.029 40.909 0.00 0.00 0.00 1.73
702 723 2.872858 GGCAAGCAGTATTAGTAGCACC 59.127 50.000 0.00 0.00 0.00 5.01
734 755 3.869246 CGACCAACCAGTATACATGTTCC 59.131 47.826 2.30 0.00 0.00 3.62
735 756 3.869065 ACCAACCAGTATACATGTTCCG 58.131 45.455 2.30 3.38 0.00 4.30
869 890 2.358737 CGTTGGTGGAGTGGGCTC 60.359 66.667 0.00 0.00 40.93 4.70
882 903 2.182030 GGCTCTGGTCGAGTTCCG 59.818 66.667 0.00 0.00 41.98 4.30
928 960 0.907230 ACTGGGTCCAGAAGAGGCTC 60.907 60.000 22.46 6.34 46.30 4.70
961 993 4.075682 GGTTCCTCTTCCTTTCCTTCTTG 58.924 47.826 0.00 0.00 0.00 3.02
967 999 8.805145 TCCTCTTCCTTTCCTTCTTGATATAT 57.195 34.615 0.00 0.00 0.00 0.86
1080 1147 4.028490 ATGGCGGGCAAGGACGAA 62.028 61.111 8.78 0.00 0.00 3.85
1393 1463 1.140312 TCTGACCAAGGGCAAAGTCT 58.860 50.000 0.00 0.00 0.00 3.24
2066 3616 1.541147 TGTAATGTCCTTTGCTGCTGC 59.459 47.619 8.89 8.89 40.20 5.25
2727 4326 9.281371 CCTAATAGATGAACACATGACATTCAT 57.719 33.333 17.68 17.68 43.93 2.57
2744 4343 9.176460 TGACATTCATAAATCACAAAGCATCTA 57.824 29.630 0.00 0.00 0.00 1.98
2745 4344 9.443283 GACATTCATAAATCACAAAGCATCTAC 57.557 33.333 0.00 0.00 0.00 2.59
2746 4345 8.408601 ACATTCATAAATCACAAAGCATCTACC 58.591 33.333 0.00 0.00 0.00 3.18
2747 4346 6.942532 TCATAAATCACAAAGCATCTACCC 57.057 37.500 0.00 0.00 0.00 3.69
2748 4347 5.827797 TCATAAATCACAAAGCATCTACCCC 59.172 40.000 0.00 0.00 0.00 4.95
2749 4348 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
2750 4349 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
2751 4350 1.702401 TCACAAAGCATCTACCCCACA 59.298 47.619 0.00 0.00 0.00 4.17
2752 4351 1.812571 CACAAAGCATCTACCCCACAC 59.187 52.381 0.00 0.00 0.00 3.82
2753 4352 1.271926 ACAAAGCATCTACCCCACACC 60.272 52.381 0.00 0.00 0.00 4.16
2754 4353 1.072266 AAAGCATCTACCCCACACCA 58.928 50.000 0.00 0.00 0.00 4.17
2755 4354 0.328258 AAGCATCTACCCCACACCAC 59.672 55.000 0.00 0.00 0.00 4.16
2756 4355 0.840288 AGCATCTACCCCACACCACA 60.840 55.000 0.00 0.00 0.00 4.17
2757 4356 0.676782 GCATCTACCCCACACCACAC 60.677 60.000 0.00 0.00 0.00 3.82
2758 4357 0.984230 CATCTACCCCACACCACACT 59.016 55.000 0.00 0.00 0.00 3.55
2759 4358 1.351017 CATCTACCCCACACCACACTT 59.649 52.381 0.00 0.00 0.00 3.16
2760 4359 0.762418 TCTACCCCACACCACACTTG 59.238 55.000 0.00 0.00 0.00 3.16
2761 4360 0.762418 CTACCCCACACCACACTTGA 59.238 55.000 0.00 0.00 0.00 3.02
2762 4361 1.142060 CTACCCCACACCACACTTGAA 59.858 52.381 0.00 0.00 0.00 2.69
2763 4362 0.333312 ACCCCACACCACACTTGAAA 59.667 50.000 0.00 0.00 0.00 2.69
2764 4363 1.063266 ACCCCACACCACACTTGAAAT 60.063 47.619 0.00 0.00 0.00 2.17
2765 4364 1.613437 CCCCACACCACACTTGAAATC 59.387 52.381 0.00 0.00 0.00 2.17
2766 4365 2.305928 CCCACACCACACTTGAAATCA 58.694 47.619 0.00 0.00 0.00 2.57
2767 4366 2.294233 CCCACACCACACTTGAAATCAG 59.706 50.000 0.00 0.00 0.00 2.90
2768 4367 2.294233 CCACACCACACTTGAAATCAGG 59.706 50.000 0.00 0.00 0.00 3.86
2769 4368 3.213506 CACACCACACTTGAAATCAGGA 58.786 45.455 0.00 0.00 0.00 3.86
2770 4369 3.251729 CACACCACACTTGAAATCAGGAG 59.748 47.826 0.00 0.00 0.00 3.69
2771 4370 2.816087 CACCACACTTGAAATCAGGAGG 59.184 50.000 0.00 1.70 0.00 4.30
2772 4371 2.224867 ACCACACTTGAAATCAGGAGGG 60.225 50.000 0.00 1.04 0.00 4.30
2773 4372 2.440409 CACACTTGAAATCAGGAGGGG 58.560 52.381 0.00 0.00 0.00 4.79
2774 4373 1.355720 ACACTTGAAATCAGGAGGGGG 59.644 52.381 0.00 0.00 0.00 5.40
2836 4435 2.092753 GTCATGTGTCATCCATCAGGGT 60.093 50.000 0.00 0.00 38.11 4.34
2863 4462 0.317160 CACCTGCTAACCGTGAGACA 59.683 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.489073 GGAAAAGGCTCAACCAAGAGGA 60.489 50.000 0.00 0.00 43.14 3.71
302 319 1.913262 ATGTGGGTCCGCTCTGTCA 60.913 57.895 2.07 0.00 0.00 3.58
417 434 1.638589 CCCCCAGGACCTTGTTTATCA 59.361 52.381 0.00 0.00 33.47 2.15
542 563 9.826574 ATAATTGTAGTCCGTTATGTGTGTTAT 57.173 29.630 0.00 0.00 0.00 1.89
606 627 3.728845 CGAATGGACGGTCCTTATTCAT 58.271 45.455 26.79 12.97 37.46 2.57
625 646 0.600557 ATGGCCGTTTGATTTTGCGA 59.399 45.000 0.00 0.00 0.00 5.10
649 670 2.430465 CTGATTGCAGCAGTACAGGTT 58.570 47.619 14.03 0.00 34.95 3.50
671 692 1.401761 ACTGCTTGCCATGTTGTTGA 58.598 45.000 0.00 0.00 0.00 3.18
695 716 1.513586 CGAGAACGACCGGTGCTAC 60.514 63.158 14.63 0.29 42.66 3.58
734 755 2.097629 TGAATCGTAGAAGCTGACCTCG 59.902 50.000 0.00 0.00 43.58 4.63
735 756 3.440228 GTGAATCGTAGAAGCTGACCTC 58.560 50.000 0.00 0.00 43.58 3.85
869 890 4.796231 CGCCCGGAACTCGACCAG 62.796 72.222 0.73 0.00 42.43 4.00
882 903 4.334118 ACCCGTTTACCACCGCCC 62.334 66.667 0.00 0.00 0.00 6.13
928 960 3.140225 GAGGAACCCTAGCCGAGCG 62.140 68.421 0.00 0.00 31.76 5.03
961 993 3.848917 GCGGTGCCGTCTCGATATATATC 60.849 52.174 12.07 12.07 42.09 1.63
967 999 3.896133 GGCGGTGCCGTCTCGATA 61.896 66.667 12.46 0.00 39.62 2.92
1080 1147 1.203441 TCAGCATCCACTTCCCAGCT 61.203 55.000 0.00 0.00 0.00 4.24
1393 1463 0.320374 ATCTCGGCTTTCGACAACCA 59.680 50.000 0.00 0.00 43.74 3.67
2066 3616 3.753294 AATTAGCATAGGAGTCACCCG 57.247 47.619 0.00 0.00 40.05 5.28
2692 4291 6.042093 TGTGTTCATCTATTAGGATGGGTCTC 59.958 42.308 4.91 0.08 42.22 3.36
2693 4292 5.905331 TGTGTTCATCTATTAGGATGGGTCT 59.095 40.000 4.91 0.00 42.22 3.85
2694 4293 6.174720 TGTGTTCATCTATTAGGATGGGTC 57.825 41.667 4.91 0.00 42.22 4.46
2695 4294 6.329986 TCATGTGTTCATCTATTAGGATGGGT 59.670 38.462 4.91 0.00 42.22 4.51
2696 4295 6.652481 GTCATGTGTTCATCTATTAGGATGGG 59.348 42.308 4.91 0.00 42.22 4.00
2697 4296 7.219322 TGTCATGTGTTCATCTATTAGGATGG 58.781 38.462 4.91 0.00 42.22 3.51
2698 4297 8.843885 ATGTCATGTGTTCATCTATTAGGATG 57.156 34.615 0.00 0.00 43.01 3.51
2699 4298 9.499479 GAATGTCATGTGTTCATCTATTAGGAT 57.501 33.333 0.00 0.00 31.15 3.24
2700 4299 8.485392 TGAATGTCATGTGTTCATCTATTAGGA 58.515 33.333 0.00 0.00 31.15 2.94
2701 4300 8.667076 TGAATGTCATGTGTTCATCTATTAGG 57.333 34.615 0.00 0.00 31.15 2.69
2707 4306 9.181061 TGATTTATGAATGTCATGTGTTCATCT 57.819 29.630 18.91 10.40 40.61 2.90
2708 4307 9.229784 GTGATTTATGAATGTCATGTGTTCATC 57.770 33.333 18.91 11.10 40.61 2.92
2709 4308 8.741841 TGTGATTTATGAATGTCATGTGTTCAT 58.258 29.630 19.15 19.15 43.06 2.57
2710 4309 8.108551 TGTGATTTATGAATGTCATGTGTTCA 57.891 30.769 10.80 10.80 37.70 3.18
2727 4326 4.947388 GTGGGGTAGATGCTTTGTGATTTA 59.053 41.667 0.00 0.00 0.00 1.40
2744 4343 0.333312 TTTCAAGTGTGGTGTGGGGT 59.667 50.000 0.00 0.00 0.00 4.95
2745 4344 1.613437 GATTTCAAGTGTGGTGTGGGG 59.387 52.381 0.00 0.00 0.00 4.96
2746 4345 2.294233 CTGATTTCAAGTGTGGTGTGGG 59.706 50.000 0.00 0.00 0.00 4.61
2747 4346 2.294233 CCTGATTTCAAGTGTGGTGTGG 59.706 50.000 0.00 0.00 0.00 4.17
2748 4347 3.213506 TCCTGATTTCAAGTGTGGTGTG 58.786 45.455 0.00 0.00 0.00 3.82
2749 4348 3.480470 CTCCTGATTTCAAGTGTGGTGT 58.520 45.455 0.00 0.00 0.00 4.16
2750 4349 2.816087 CCTCCTGATTTCAAGTGTGGTG 59.184 50.000 0.00 0.00 0.00 4.17
2751 4350 2.224867 CCCTCCTGATTTCAAGTGTGGT 60.225 50.000 0.00 0.00 0.00 4.16
2752 4351 2.440409 CCCTCCTGATTTCAAGTGTGG 58.560 52.381 0.00 0.00 0.00 4.17
2753 4352 2.440409 CCCCTCCTGATTTCAAGTGTG 58.560 52.381 0.00 0.00 0.00 3.82
2754 4353 1.355720 CCCCCTCCTGATTTCAAGTGT 59.644 52.381 0.00 0.00 0.00 3.55
2755 4354 2.134789 CCCCCTCCTGATTTCAAGTG 57.865 55.000 0.00 0.00 0.00 3.16
2782 4381 2.175715 ACAAAGCATCTAATCCTCCCCC 59.824 50.000 0.00 0.00 0.00 5.40
2783 4382 3.117888 TCACAAAGCATCTAATCCTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
2784 4383 4.156455 TCACAAAGCATCTAATCCTCCC 57.844 45.455 0.00 0.00 0.00 4.30
2785 4384 6.096001 ACAAATCACAAAGCATCTAATCCTCC 59.904 38.462 0.00 0.00 0.00 4.30
2786 4385 6.971184 CACAAATCACAAAGCATCTAATCCTC 59.029 38.462 0.00 0.00 0.00 3.71
2787 4386 6.660521 TCACAAATCACAAAGCATCTAATCCT 59.339 34.615 0.00 0.00 0.00 3.24
2788 4387 6.855836 TCACAAATCACAAAGCATCTAATCC 58.144 36.000 0.00 0.00 0.00 3.01
2789 4388 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
2790 4389 8.308931 ACATTCACAAATCACAAAGCATCTAAT 58.691 29.630 0.00 0.00 0.00 1.73
2791 4390 7.660112 ACATTCACAAATCACAAAGCATCTAA 58.340 30.769 0.00 0.00 0.00 2.10
2836 4435 1.198759 GGTTAGCAGGTGAGACCCCA 61.199 60.000 0.00 0.00 39.75 4.96
2837 4436 1.602771 GGTTAGCAGGTGAGACCCC 59.397 63.158 0.00 0.00 39.75 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.