Multiple sequence alignment - TraesCS7A01G047000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G047000 chr7A 100.000 5679 0 0 1 5679 21267694 21262016 0.000000e+00 10488.0
1 TraesCS7A01G047000 chr7A 93.077 130 9 0 1 130 9325037 9325166 2.090000e-44 191.0
2 TraesCS7A01G047000 chr7D 90.781 3341 181 61 1825 5101 20955610 20952333 0.000000e+00 4346.0
3 TraesCS7A01G047000 chr7D 84.149 1022 51 52 858 1824 20956609 20955644 0.000000e+00 887.0
4 TraesCS7A01G047000 chr7D 91.562 557 34 9 5131 5679 20952333 20951782 0.000000e+00 756.0
5 TraesCS7A01G047000 chr7D 88.591 149 14 3 1 147 546536022 546535875 1.630000e-40 178.0
6 TraesCS7A01G047000 chr7D 73.374 492 86 31 142 591 20957354 20956866 2.130000e-29 141.0
7 TraesCS7A01G047000 chr7D 76.970 165 35 3 229 392 84423664 84423502 2.180000e-14 91.6
8 TraesCS7A01G047000 chr7D 100.000 30 0 0 768 797 619801904 619801875 7.950000e-04 56.5
9 TraesCS7A01G047000 chr4A 90.058 3299 214 61 1821 5084 669317106 669320325 0.000000e+00 4170.0
10 TraesCS7A01G047000 chr4A 80.392 1071 90 65 817 1824 669316059 669317072 0.000000e+00 704.0
11 TraesCS7A01G047000 chr4A 91.096 146 10 3 5272 5416 669323274 669323417 1.610000e-45 195.0
12 TraesCS7A01G047000 chr4A 92.537 134 9 1 1 134 683444600 683444468 2.090000e-44 191.0
13 TraesCS7A01G047000 chr2A 83.278 299 22 13 930 1215 475514479 475514196 3.400000e-62 250.0
14 TraesCS7A01G047000 chr2A 81.757 296 26 13 930 1212 730314494 730314214 7.410000e-54 222.0
15 TraesCS7A01G047000 chr3A 83.446 296 20 13 930 1212 494432083 494432362 1.220000e-61 248.0
16 TraesCS7A01G047000 chr3A 82.712 295 24 15 930 1212 503055534 503055813 2.640000e-58 237.0
17 TraesCS7A01G047000 chr3A 93.023 129 8 1 1 129 57196670 57196797 2.700000e-43 187.0
18 TraesCS7A01G047000 chr3A 89.262 149 9 5 1 147 446387 446244 4.520000e-41 180.0
19 TraesCS7A01G047000 chr1D 83.000 300 22 13 930 1215 20518834 20518550 1.580000e-60 244.0
20 TraesCS7A01G047000 chr6B 82.770 296 23 19 930 1212 69471801 69472081 7.350000e-59 239.0
21 TraesCS7A01G047000 chr6B 89.855 69 7 0 5596 5664 291046814 291046746 7.840000e-14 89.8
22 TraesCS7A01G047000 chr1A 82.770 296 23 13 930 1212 280000902 280001182 7.350000e-59 239.0
23 TraesCS7A01G047000 chr5A 81.757 296 27 15 930 1212 134456141 134456422 7.410000e-54 222.0
24 TraesCS7A01G047000 chr5A 92.969 128 9 0 1 128 639712372 639712499 2.700000e-43 187.0
25 TraesCS7A01G047000 chr5A 90.780 141 10 3 1 139 83928377 83928238 9.720000e-43 185.0
26 TraesCS7A01G047000 chr1B 94.355 124 7 0 1 124 681131156 681131033 2.090000e-44 191.0
27 TraesCS7A01G047000 chr6D 91.429 140 9 3 1 138 357008725 357008863 7.510000e-44 189.0
28 TraesCS7A01G047000 chr4B 83.607 122 7 5 930 1049 652315615 652315725 1.010000e-17 102.0
29 TraesCS7A01G047000 chr2D 100.000 29 0 0 769 797 602724492 602724520 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G047000 chr7A 21262016 21267694 5678 True 10488.000000 10488 100.0000 1 5679 1 chr7A.!!$R1 5678
1 TraesCS7A01G047000 chr7D 20951782 20957354 5572 True 1532.500000 4346 84.9665 142 5679 4 chr7D.!!$R4 5537
2 TraesCS7A01G047000 chr4A 669316059 669323417 7358 False 1689.666667 4170 87.1820 817 5416 3 chr4A.!!$F1 4599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.036732 TGCTAAGGTCTTGTGCCCTG 59.963 55.000 7.61 0.0 0.0 4.45 F
485 503 0.104120 AACAAGTTTTGCCCGGCTTC 59.896 50.000 11.61 0.0 0.0 3.86 F
1045 1203 0.105709 CTCCCTCCCCCTCTCTCTTC 60.106 65.000 0.00 0.0 0.0 2.87 F
1913 2198 0.613777 GACGGTCATTCCCCACTTCT 59.386 55.000 2.62 0.0 0.0 2.85 F
2084 2379 1.135199 TCGGCGTTAACAGTGAGGATC 60.135 52.381 6.85 0.0 0.0 3.36 F
3081 3386 1.259609 CATGTGTGACCTGCCCATTT 58.740 50.000 0.00 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1747 0.107654 AGCCAGCCGATTCCAGTAAC 60.108 55.00 0.00 0.0 0.00 2.50 R
1751 1990 0.250209 GGACGAGCATGCATCCATCT 60.250 55.00 21.98 0.0 0.00 2.90 R
2310 2612 1.311859 CTGGTTGCTTGCTGTTCAGA 58.688 50.00 3.84 0.0 0.00 3.27 R
3523 3839 0.664166 CAGGTGCACAAAATCCACGC 60.664 55.00 20.43 0.0 0.00 5.34 R
3881 4199 5.243426 TCATATTAAAAGTCGGCAAAGCC 57.757 39.13 0.00 0.0 46.75 4.35 R
4961 5298 0.112995 AGATTCAGTGCCAAAGCCCA 59.887 50.00 0.00 0.0 38.69 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.465353 TGGAATGACATTTGTGATGTATTGT 57.535 32.000 1.39 0.00 31.52 2.71
33 34 7.537715 TGGAATGACATTTGTGATGTATTGTC 58.462 34.615 1.39 0.00 35.27 3.18
34 35 7.176340 TGGAATGACATTTGTGATGTATTGTCA 59.824 33.333 1.39 6.08 45.10 3.58
35 36 8.028354 GGAATGACATTTGTGATGTATTGTCAA 58.972 33.333 1.39 0.00 44.45 3.18
36 37 9.409312 GAATGACATTTGTGATGTATTGTCAAA 57.591 29.630 1.39 0.00 44.45 2.69
37 38 9.761504 AATGACATTTGTGATGTATTGTCAAAA 57.238 25.926 7.54 0.00 44.45 2.44
38 39 9.761504 ATGACATTTGTGATGTATTGTCAAAAA 57.238 25.926 7.54 0.00 44.45 1.94
39 40 9.029243 TGACATTTGTGATGTATTGTCAAAAAC 57.971 29.630 1.38 0.00 40.14 2.43
40 41 8.364129 ACATTTGTGATGTATTGTCAAAAACC 57.636 30.769 0.00 0.00 36.07 3.27
41 42 7.984050 ACATTTGTGATGTATTGTCAAAAACCA 59.016 29.630 0.00 0.00 36.07 3.67
42 43 8.824781 CATTTGTGATGTATTGTCAAAAACCAA 58.175 29.630 0.00 0.00 36.07 3.67
43 44 8.417780 TTTGTGATGTATTGTCAAAAACCAAG 57.582 30.769 0.00 0.00 30.03 3.61
44 45 7.340122 TGTGATGTATTGTCAAAAACCAAGA 57.660 32.000 0.00 0.00 0.00 3.02
45 46 7.424803 TGTGATGTATTGTCAAAAACCAAGAG 58.575 34.615 0.00 0.00 0.00 2.85
46 47 7.068103 TGTGATGTATTGTCAAAAACCAAGAGT 59.932 33.333 0.00 0.00 0.00 3.24
47 48 7.379529 GTGATGTATTGTCAAAAACCAAGAGTG 59.620 37.037 0.00 0.00 0.00 3.51
58 59 2.486472 CCAAGAGTGGCAGAAGTGAT 57.514 50.000 0.00 0.00 38.35 3.06
59 60 3.616956 CCAAGAGTGGCAGAAGTGATA 57.383 47.619 0.00 0.00 38.35 2.15
60 61 4.148128 CCAAGAGTGGCAGAAGTGATAT 57.852 45.455 0.00 0.00 38.35 1.63
61 62 3.875727 CCAAGAGTGGCAGAAGTGATATG 59.124 47.826 0.00 0.00 38.35 1.78
62 63 4.511527 CAAGAGTGGCAGAAGTGATATGT 58.488 43.478 0.00 0.00 0.00 2.29
63 64 4.833478 AGAGTGGCAGAAGTGATATGTT 57.167 40.909 0.00 0.00 0.00 2.71
64 65 5.939764 AGAGTGGCAGAAGTGATATGTTA 57.060 39.130 0.00 0.00 0.00 2.41
65 66 6.299805 AGAGTGGCAGAAGTGATATGTTAA 57.700 37.500 0.00 0.00 0.00 2.01
66 67 6.711277 AGAGTGGCAGAAGTGATATGTTAAA 58.289 36.000 0.00 0.00 0.00 1.52
67 68 7.341805 AGAGTGGCAGAAGTGATATGTTAAAT 58.658 34.615 0.00 0.00 0.00 1.40
68 69 7.831193 AGAGTGGCAGAAGTGATATGTTAAATT 59.169 33.333 0.00 0.00 0.00 1.82
69 70 9.109393 GAGTGGCAGAAGTGATATGTTAAATTA 57.891 33.333 0.00 0.00 0.00 1.40
70 71 9.632638 AGTGGCAGAAGTGATATGTTAAATTAT 57.367 29.630 0.00 0.00 0.00 1.28
85 86 8.972458 TGTTAAATTATAGAGTGGCATAAGCA 57.028 30.769 0.00 0.00 44.61 3.91
86 87 9.402320 TGTTAAATTATAGAGTGGCATAAGCAA 57.598 29.630 0.00 0.00 44.61 3.91
89 90 8.525290 AAATTATAGAGTGGCATAAGCAAAGT 57.475 30.769 0.00 0.00 44.61 2.66
90 91 9.627123 AAATTATAGAGTGGCATAAGCAAAGTA 57.373 29.630 0.00 0.00 44.61 2.24
91 92 8.839310 ATTATAGAGTGGCATAAGCAAAGTAG 57.161 34.615 0.00 0.00 44.61 2.57
92 93 3.878778 AGAGTGGCATAAGCAAAGTAGG 58.121 45.455 0.00 0.00 44.61 3.18
93 94 3.264450 AGAGTGGCATAAGCAAAGTAGGT 59.736 43.478 0.00 0.00 44.61 3.08
94 95 4.469945 AGAGTGGCATAAGCAAAGTAGGTA 59.530 41.667 0.00 0.00 44.61 3.08
95 96 5.045869 AGAGTGGCATAAGCAAAGTAGGTAA 60.046 40.000 0.00 0.00 44.61 2.85
96 97 5.566469 AGTGGCATAAGCAAAGTAGGTAAA 58.434 37.500 0.00 0.00 44.61 2.01
97 98 6.007703 AGTGGCATAAGCAAAGTAGGTAAAA 58.992 36.000 0.00 0.00 44.61 1.52
98 99 6.151144 AGTGGCATAAGCAAAGTAGGTAAAAG 59.849 38.462 0.00 0.00 44.61 2.27
99 100 5.105917 TGGCATAAGCAAAGTAGGTAAAAGC 60.106 40.000 0.00 0.00 44.61 3.51
100 101 5.125578 GGCATAAGCAAAGTAGGTAAAAGCT 59.874 40.000 0.00 0.00 44.61 3.74
101 102 6.317893 GGCATAAGCAAAGTAGGTAAAAGCTA 59.682 38.462 0.00 0.00 44.61 3.32
102 103 7.410485 GCATAAGCAAAGTAGGTAAAAGCTAG 58.590 38.462 0.00 0.00 41.58 3.42
103 104 7.280205 GCATAAGCAAAGTAGGTAAAAGCTAGA 59.720 37.037 0.00 0.00 41.58 2.43
104 105 8.821894 CATAAGCAAAGTAGGTAAAAGCTAGAG 58.178 37.037 0.00 0.00 0.00 2.43
105 106 6.361768 AGCAAAGTAGGTAAAAGCTAGAGT 57.638 37.500 0.00 0.00 0.00 3.24
106 107 6.166982 AGCAAAGTAGGTAAAAGCTAGAGTG 58.833 40.000 0.00 0.00 0.00 3.51
107 108 5.351740 GCAAAGTAGGTAAAAGCTAGAGTGG 59.648 44.000 0.00 0.00 0.00 4.00
108 109 4.739587 AGTAGGTAAAAGCTAGAGTGGC 57.260 45.455 0.00 0.00 0.00 5.01
109 110 4.094476 AGTAGGTAAAAGCTAGAGTGGCA 58.906 43.478 0.00 0.00 0.00 4.92
110 111 4.530946 AGTAGGTAAAAGCTAGAGTGGCAA 59.469 41.667 0.00 0.00 0.00 4.52
111 112 4.367039 AGGTAAAAGCTAGAGTGGCAAA 57.633 40.909 0.00 0.00 0.00 3.68
112 113 4.725490 AGGTAAAAGCTAGAGTGGCAAAA 58.275 39.130 0.00 0.00 0.00 2.44
113 114 5.137551 AGGTAAAAGCTAGAGTGGCAAAAA 58.862 37.500 0.00 0.00 0.00 1.94
114 115 5.009710 AGGTAAAAGCTAGAGTGGCAAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
115 116 5.221165 GGTAAAAGCTAGAGTGGCAAAAACA 60.221 40.000 0.00 0.00 0.00 2.83
116 117 5.337578 AAAAGCTAGAGTGGCAAAAACAA 57.662 34.783 0.00 0.00 0.00 2.83
117 118 5.337578 AAAGCTAGAGTGGCAAAAACAAA 57.662 34.783 0.00 0.00 0.00 2.83
118 119 4.574599 AGCTAGAGTGGCAAAAACAAAG 57.425 40.909 0.00 0.00 0.00 2.77
119 120 3.954258 AGCTAGAGTGGCAAAAACAAAGT 59.046 39.130 0.00 0.00 0.00 2.66
120 121 4.402474 AGCTAGAGTGGCAAAAACAAAGTT 59.598 37.500 0.00 0.00 0.00 2.66
121 122 5.105351 AGCTAGAGTGGCAAAAACAAAGTTT 60.105 36.000 0.00 0.00 0.00 2.66
122 123 5.580691 GCTAGAGTGGCAAAAACAAAGTTTT 59.419 36.000 0.00 2.26 0.00 2.43
123 124 6.237835 GCTAGAGTGGCAAAAACAAAGTTTTC 60.238 38.462 8.16 0.00 0.00 2.29
124 125 5.793817 AGAGTGGCAAAAACAAAGTTTTCT 58.206 33.333 8.16 1.73 0.00 2.52
125 126 5.869344 AGAGTGGCAAAAACAAAGTTTTCTC 59.131 36.000 8.16 9.56 0.00 2.87
126 127 5.793817 AGTGGCAAAAACAAAGTTTTCTCT 58.206 33.333 8.16 1.35 0.00 3.10
127 128 6.230472 AGTGGCAAAAACAAAGTTTTCTCTT 58.770 32.000 8.16 0.00 0.00 2.85
128 129 6.710295 AGTGGCAAAAACAAAGTTTTCTCTTT 59.290 30.769 8.16 0.00 38.04 2.52
129 130 7.228507 AGTGGCAAAAACAAAGTTTTCTCTTTT 59.771 29.630 8.16 0.00 35.77 2.27
130 131 7.323416 GTGGCAAAAACAAAGTTTTCTCTTTTG 59.677 33.333 8.16 12.51 35.77 2.44
131 132 6.305399 GGCAAAAACAAAGTTTTCTCTTTTGC 59.695 34.615 22.78 22.78 36.38 3.68
132 133 7.077605 GCAAAAACAAAGTTTTCTCTTTTGCT 58.922 30.769 23.16 0.00 35.30 3.91
133 134 7.591057 GCAAAAACAAAGTTTTCTCTTTTGCTT 59.409 29.630 23.16 0.00 35.30 3.91
134 135 9.449550 CAAAAACAAAGTTTTCTCTTTTGCTTT 57.550 25.926 8.16 0.00 35.77 3.51
135 136 9.449550 AAAAACAAAGTTTTCTCTTTTGCTTTG 57.550 25.926 8.16 11.69 44.60 2.77
136 137 6.726258 ACAAAGTTTTCTCTTTTGCTTTGG 57.274 33.333 15.95 2.83 43.86 3.28
137 138 6.230472 ACAAAGTTTTCTCTTTTGCTTTGGT 58.770 32.000 15.95 3.30 43.86 3.67
138 139 7.382898 ACAAAGTTTTCTCTTTTGCTTTGGTA 58.617 30.769 15.95 0.00 43.86 3.25
139 140 8.040727 ACAAAGTTTTCTCTTTTGCTTTGGTAT 58.959 29.630 15.95 0.00 43.86 2.73
140 141 8.330302 CAAAGTTTTCTCTTTTGCTTTGGTATG 58.670 33.333 0.00 0.00 39.11 2.39
167 168 7.769272 TTTTGAATTTTGCTAAGGTCTTGTG 57.231 32.000 0.00 0.00 0.00 3.33
168 169 4.870363 TGAATTTTGCTAAGGTCTTGTGC 58.130 39.130 0.00 0.00 0.00 4.57
169 170 3.942130 ATTTTGCTAAGGTCTTGTGCC 57.058 42.857 7.61 0.00 0.00 5.01
172 173 0.036732 TGCTAAGGTCTTGTGCCCTG 59.963 55.000 7.61 0.00 0.00 4.45
175 176 2.863809 CTAAGGTCTTGTGCCCTGTTT 58.136 47.619 0.00 0.00 0.00 2.83
179 180 2.441750 AGGTCTTGTGCCCTGTTTAAGA 59.558 45.455 0.00 0.00 0.00 2.10
182 183 4.134563 GTCTTGTGCCCTGTTTAAGAAGA 58.865 43.478 0.00 0.00 0.00 2.87
186 187 3.135994 GTGCCCTGTTTAAGAAGACGAA 58.864 45.455 0.00 0.00 0.00 3.85
190 191 4.053295 CCCTGTTTAAGAAGACGAAACGA 58.947 43.478 0.00 0.00 36.14 3.85
193 194 3.486841 TGTTTAAGAAGACGAAACGACGG 59.513 43.478 0.00 0.00 36.14 4.79
194 195 1.689959 TAAGAAGACGAAACGACGGC 58.310 50.000 0.00 0.00 42.10 5.68
195 196 0.249155 AAGAAGACGAAACGACGGCA 60.249 50.000 0.00 0.00 44.44 5.69
199 200 2.279918 ACGAAACGACGGCAGCTT 60.280 55.556 0.00 0.00 37.61 3.74
210 211 2.352960 GACGGCAGCTTCTTAAAGATGG 59.647 50.000 5.67 0.00 46.60 3.51
212 213 2.611292 CGGCAGCTTCTTAAAGATGGAG 59.389 50.000 5.67 0.00 46.60 3.86
216 217 5.648092 GGCAGCTTCTTAAAGATGGAGTAAA 59.352 40.000 5.67 0.00 46.60 2.01
222 223 8.447053 GCTTCTTAAAGATGGAGTAAAGTTCTG 58.553 37.037 0.00 0.00 34.14 3.02
223 224 7.907214 TCTTAAAGATGGAGTAAAGTTCTGC 57.093 36.000 0.00 0.00 0.00 4.26
224 225 6.590292 TCTTAAAGATGGAGTAAAGTTCTGCG 59.410 38.462 0.00 0.00 0.00 5.18
227 228 1.508632 TGGAGTAAAGTTCTGCGTGC 58.491 50.000 0.00 0.00 0.00 5.34
229 230 0.438830 GAGTAAAGTTCTGCGTGCCG 59.561 55.000 0.00 0.00 0.00 5.69
230 231 0.949105 AGTAAAGTTCTGCGTGCCGG 60.949 55.000 0.00 0.00 0.00 6.13
231 232 0.947180 GTAAAGTTCTGCGTGCCGGA 60.947 55.000 5.05 0.00 0.00 5.14
232 233 0.669318 TAAAGTTCTGCGTGCCGGAG 60.669 55.000 5.05 9.27 46.23 4.63
244 245 2.739287 CCGGAGGCGCGTTTAACA 60.739 61.111 8.43 0.00 46.14 2.41
246 247 1.347221 CGGAGGCGCGTTTAACATC 59.653 57.895 8.43 0.00 0.00 3.06
248 249 0.743345 GGAGGCGCGTTTAACATCCT 60.743 55.000 8.43 1.95 0.00 3.24
249 250 0.651031 GAGGCGCGTTTAACATCCTC 59.349 55.000 8.43 8.75 34.13 3.71
250 251 1.082117 AGGCGCGTTTAACATCCTCG 61.082 55.000 8.43 0.00 0.00 4.63
251 252 1.347221 GCGCGTTTAACATCCTCGG 59.653 57.895 8.43 0.00 0.00 4.63
253 254 0.921347 CGCGTTTAACATCCTCGGAG 59.079 55.000 0.00 0.00 0.00 4.63
254 255 1.287425 GCGTTTAACATCCTCGGAGG 58.713 55.000 18.25 18.25 36.46 4.30
264 280 2.579201 CTCGGAGGGCGTGTGAAT 59.421 61.111 0.00 0.00 0.00 2.57
266 282 2.047274 CGGAGGGCGTGTGAATGT 60.047 61.111 0.00 0.00 0.00 2.71
274 290 1.502231 GCGTGTGAATGTGTGTCTCT 58.498 50.000 0.00 0.00 0.00 3.10
275 291 2.609491 GGCGTGTGAATGTGTGTCTCTA 60.609 50.000 0.00 0.00 0.00 2.43
276 292 2.663602 GCGTGTGAATGTGTGTCTCTAG 59.336 50.000 0.00 0.00 0.00 2.43
296 312 2.814919 AGCGGATCTCGTAGAATTCGAT 59.185 45.455 0.00 0.00 41.72 3.59
302 318 2.289820 TCTCGTAGAATTCGATCGGTGG 59.710 50.000 16.41 0.00 36.73 4.61
304 320 2.032550 TCGTAGAATTCGATCGGTGGTC 59.967 50.000 16.41 7.97 32.30 4.02
305 321 2.033049 CGTAGAATTCGATCGGTGGTCT 59.967 50.000 16.41 14.51 0.00 3.85
312 328 1.067142 TCGATCGGTGGTCTTCTTTGG 60.067 52.381 16.41 0.00 0.00 3.28
314 330 2.076863 GATCGGTGGTCTTCTTTGGTG 58.923 52.381 0.00 0.00 0.00 4.17
316 332 0.107831 CGGTGGTCTTCTTTGGTGGA 59.892 55.000 0.00 0.00 0.00 4.02
319 335 2.437413 GTGGTCTTCTTTGGTGGATCC 58.563 52.381 4.20 4.20 0.00 3.36
336 352 4.637489 CGCTCGGATCCAGCCTCG 62.637 72.222 22.59 11.02 32.83 4.63
342 358 1.721664 CGGATCCAGCCTCGTTCGTA 61.722 60.000 13.41 0.00 0.00 3.43
346 362 1.027357 TCCAGCCTCGTTCGTATACC 58.973 55.000 0.00 0.00 0.00 2.73
347 363 1.030457 CCAGCCTCGTTCGTATACCT 58.970 55.000 0.00 0.00 0.00 3.08
351 367 1.674962 GCCTCGTTCGTATACCTCAGT 59.325 52.381 0.00 0.00 0.00 3.41
359 375 4.959596 TCGTATACCTCAGTGTGTCTTC 57.040 45.455 0.00 0.00 0.00 2.87
374 390 2.716424 TGTCTTCAGGTTGGGATCCTTT 59.284 45.455 12.58 0.00 32.37 3.11
375 391 3.140144 TGTCTTCAGGTTGGGATCCTTTT 59.860 43.478 12.58 0.00 32.37 2.27
392 408 6.579666 TCCTTTTGATCCATGTTTCTCTTG 57.420 37.500 0.00 0.00 0.00 3.02
393 409 6.070656 TCCTTTTGATCCATGTTTCTCTTGT 58.929 36.000 0.00 0.00 0.00 3.16
395 411 6.016024 CCTTTTGATCCATGTTTCTCTTGTGA 60.016 38.462 0.00 0.00 0.00 3.58
397 413 4.005650 TGATCCATGTTTCTCTTGTGAGC 58.994 43.478 0.00 0.00 40.03 4.26
398 414 2.416747 TCCATGTTTCTCTTGTGAGCG 58.583 47.619 0.00 0.00 40.03 5.03
400 416 2.416747 CATGTTTCTCTTGTGAGCGGA 58.583 47.619 0.00 0.00 40.03 5.54
401 417 2.154854 TGTTTCTCTTGTGAGCGGAG 57.845 50.000 0.00 0.00 40.03 4.63
403 419 1.048601 TTTCTCTTGTGAGCGGAGGT 58.951 50.000 0.00 0.00 46.54 3.85
406 422 1.000955 TCTCTTGTGAGCGGAGGTTTC 59.999 52.381 0.00 0.00 39.88 2.78
407 423 1.001406 CTCTTGTGAGCGGAGGTTTCT 59.999 52.381 0.00 0.00 39.88 2.52
408 424 1.151668 CTTGTGAGCGGAGGTTTCTG 58.848 55.000 0.00 0.00 39.88 3.02
411 429 1.134220 TGTGAGCGGAGGTTTCTGTTT 60.134 47.619 0.00 0.00 39.88 2.83
413 431 2.031944 GTGAGCGGAGGTTTCTGTTTTC 60.032 50.000 0.00 0.00 39.88 2.29
421 439 1.112459 GTTTCTGTTTTCGTGCGCTG 58.888 50.000 9.73 0.40 0.00 5.18
422 440 1.010580 TTTCTGTTTTCGTGCGCTGA 58.989 45.000 9.73 3.44 0.00 4.26
429 447 0.652071 TTTCGTGCGCTGATGCTATG 59.348 50.000 9.73 0.00 36.97 2.23
430 448 0.460109 TTCGTGCGCTGATGCTATGT 60.460 50.000 9.73 0.00 36.97 2.29
431 449 0.460109 TCGTGCGCTGATGCTATGTT 60.460 50.000 9.73 0.00 36.97 2.71
433 451 0.729116 GTGCGCTGATGCTATGTTGT 59.271 50.000 9.73 0.00 36.97 3.32
434 452 1.009078 TGCGCTGATGCTATGTTGTC 58.991 50.000 9.73 0.00 36.97 3.18
438 456 3.060003 GCGCTGATGCTATGTTGTCTTAG 60.060 47.826 0.00 0.00 36.97 2.18
443 461 3.586100 TGCTATGTTGTCTTAGCACGA 57.414 42.857 10.32 0.00 45.67 4.35
444 462 3.250744 TGCTATGTTGTCTTAGCACGAC 58.749 45.455 10.32 0.00 45.67 4.34
445 463 2.279136 GCTATGTTGTCTTAGCACGACG 59.721 50.000 0.00 0.00 42.84 5.12
446 464 1.710013 ATGTTGTCTTAGCACGACGG 58.290 50.000 0.00 0.00 33.79 4.79
450 468 2.228138 TGTCTTAGCACGACGGTTTT 57.772 45.000 0.00 0.00 34.17 2.43
484 502 0.539518 AAACAAGTTTTGCCCGGCTT 59.460 45.000 11.61 0.00 0.00 4.35
485 503 0.104120 AACAAGTTTTGCCCGGCTTC 59.896 50.000 11.61 0.00 0.00 3.86
486 504 1.371635 CAAGTTTTGCCCGGCTTCG 60.372 57.895 11.61 0.00 0.00 3.79
489 507 2.988684 TTTTGCCCGGCTTCGCAT 60.989 55.556 11.61 0.00 34.35 4.73
491 509 4.713735 TTGCCCGGCTTCGCATGA 62.714 61.111 11.61 0.00 34.35 3.07
518 559 4.148825 GATGACGGCGAGGCACCT 62.149 66.667 16.62 0.00 43.31 4.00
557 598 0.450983 GTAGTCGTCGCTAGGTGCTT 59.549 55.000 0.00 0.00 40.11 3.91
564 605 2.479730 CGTCGCTAGGTGCTTTACAGAT 60.480 50.000 0.00 0.00 40.11 2.90
573 614 3.273434 GTGCTTTACAGATCTGGATGCA 58.727 45.455 26.08 24.86 32.73 3.96
591 632 7.049133 TGGATGCAATTTTTATCATTTCAGGG 58.951 34.615 0.00 0.00 0.00 4.45
592 633 6.017687 GGATGCAATTTTTATCATTTCAGGGC 60.018 38.462 0.00 0.00 0.00 5.19
593 634 6.052405 TGCAATTTTTATCATTTCAGGGCT 57.948 33.333 0.00 0.00 0.00 5.19
594 635 6.474630 TGCAATTTTTATCATTTCAGGGCTT 58.525 32.000 0.00 0.00 0.00 4.35
595 636 6.941436 TGCAATTTTTATCATTTCAGGGCTTT 59.059 30.769 0.00 0.00 0.00 3.51
596 637 7.447853 TGCAATTTTTATCATTTCAGGGCTTTT 59.552 29.630 0.00 0.00 0.00 2.27
597 638 8.298854 GCAATTTTTATCATTTCAGGGCTTTTT 58.701 29.630 0.00 0.00 0.00 1.94
626 667 7.147932 GGGGTGTTTTAGGTTTTTGTTGTACTA 60.148 37.037 0.00 0.00 0.00 1.82
635 676 8.927675 AGGTTTTTGTTGTACTACCATGATAA 57.072 30.769 4.98 0.00 0.00 1.75
636 677 9.528489 AGGTTTTTGTTGTACTACCATGATAAT 57.472 29.630 4.98 0.00 0.00 1.28
637 678 9.567848 GGTTTTTGTTGTACTACCATGATAATG 57.432 33.333 4.98 0.00 0.00 1.90
651 692 8.400184 ACCATGATAATGATGTTGAATCGATT 57.600 30.769 11.20 11.20 0.00 3.34
653 694 7.753580 CCATGATAATGATGTTGAATCGATTGG 59.246 37.037 16.96 0.63 0.00 3.16
661 702 8.105097 TGATGTTGAATCGATTGGAAGTTTTA 57.895 30.769 16.96 0.00 0.00 1.52
663 704 9.573133 GATGTTGAATCGATTGGAAGTTTTATT 57.427 29.630 16.96 0.00 0.00 1.40
665 706 9.405587 TGTTGAATCGATTGGAAGTTTTATTTC 57.594 29.630 16.96 0.00 0.00 2.17
666 707 9.626045 GTTGAATCGATTGGAAGTTTTATTTCT 57.374 29.630 16.96 0.00 0.00 2.52
697 738 8.928270 ATAGAATAGAATAGAATAAACCGCCG 57.072 34.615 0.00 0.00 0.00 6.46
698 739 6.989659 AGAATAGAATAGAATAAACCGCCGA 58.010 36.000 0.00 0.00 0.00 5.54
699 740 7.091443 AGAATAGAATAGAATAAACCGCCGAG 58.909 38.462 0.00 0.00 0.00 4.63
700 741 4.931661 AGAATAGAATAAACCGCCGAGA 57.068 40.909 0.00 0.00 0.00 4.04
716 777 3.365465 GCCGAGAAAAGAAAGAAAGGAGC 60.365 47.826 0.00 0.00 0.00 4.70
717 778 3.815401 CCGAGAAAAGAAAGAAAGGAGCA 59.185 43.478 0.00 0.00 0.00 4.26
718 779 4.319839 CCGAGAAAAGAAAGAAAGGAGCAC 60.320 45.833 0.00 0.00 0.00 4.40
719 780 4.273480 CGAGAAAAGAAAGAAAGGAGCACA 59.727 41.667 0.00 0.00 0.00 4.57
746 843 1.575922 CGCCATATGCCAACCATCG 59.424 57.895 0.00 0.00 35.34 3.84
749 846 1.544537 GCCATATGCCAACCATCGGTA 60.545 52.381 0.00 0.00 33.12 4.02
751 848 3.621214 GCCATATGCCAACCATCGGTATA 60.621 47.826 0.00 0.00 33.12 1.47
805 902 9.842775 ACATTTAGATGTGACATAGATGTGAAT 57.157 29.630 0.00 0.00 44.64 2.57
811 908 8.699130 AGATGTGACATAGATGTGAATTAGACA 58.301 33.333 0.00 0.00 41.95 3.41
812 909 9.317936 GATGTGACATAGATGTGAATTAGACAA 57.682 33.333 0.00 0.00 41.95 3.18
813 910 9.671279 ATGTGACATAGATGTGAATTAGACAAA 57.329 29.630 0.00 0.00 41.95 2.83
814 911 8.935844 TGTGACATAGATGTGAATTAGACAAAC 58.064 33.333 0.00 0.00 41.95 2.93
815 912 9.155975 GTGACATAGATGTGAATTAGACAAACT 57.844 33.333 0.00 1.44 41.95 2.66
816 913 9.154847 TGACATAGATGTGAATTAGACAAACTG 57.845 33.333 0.00 0.00 41.95 3.16
817 914 9.155975 GACATAGATGTGAATTAGACAAACTGT 57.844 33.333 0.00 0.00 41.95 3.55
818 915 9.507329 ACATAGATGTGAATTAGACAAACTGTT 57.493 29.630 0.00 0.00 40.03 3.16
821 918 8.682936 AGATGTGAATTAGACAAACTGTTTCT 57.317 30.769 2.13 1.41 0.00 2.52
822 919 9.125026 AGATGTGAATTAGACAAACTGTTTCTT 57.875 29.630 2.13 0.00 0.00 2.52
909 1034 0.174845 TTTATCACTGCCTCCGTCCG 59.825 55.000 0.00 0.00 0.00 4.79
944 1079 3.074999 GCAGCACCTCCTCTCCTCG 62.075 68.421 0.00 0.00 0.00 4.63
1044 1202 2.023532 CTCCCTCCCCCTCTCTCTT 58.976 63.158 0.00 0.00 0.00 2.85
1045 1203 0.105709 CTCCCTCCCCCTCTCTCTTC 60.106 65.000 0.00 0.00 0.00 2.87
1052 1210 1.380515 CCCTCTCTCTTCCTCCGCA 60.381 63.158 0.00 0.00 0.00 5.69
1202 1379 3.702623 TACCCCCACCTCCCCTCC 61.703 72.222 0.00 0.00 0.00 4.30
1229 1406 2.419620 CCCGCAAACCAACCAACC 59.580 61.111 0.00 0.00 0.00 3.77
1230 1407 2.427245 CCCGCAAACCAACCAACCA 61.427 57.895 0.00 0.00 0.00 3.67
1231 1408 1.517832 CCGCAAACCAACCAACCAA 59.482 52.632 0.00 0.00 0.00 3.67
1233 1410 1.496934 CGCAAACCAACCAACCAATC 58.503 50.000 0.00 0.00 0.00 2.67
1249 1437 1.391485 CAATCACTTTCCTGCGACTCG 59.609 52.381 0.00 0.00 0.00 4.18
1344 1552 1.229209 TGGTGGAGGAGGGAGTCAC 60.229 63.158 0.00 0.00 0.00 3.67
1367 1575 1.428219 CAGCAGCTGCAGATTTCCG 59.572 57.895 38.24 13.19 45.16 4.30
1459 1667 2.184020 TTAGCAGCAGCACGGGTCAT 62.184 55.000 3.17 0.00 45.49 3.06
1481 1689 5.091261 TCTCATCTGCTCCTTTTTCTACC 57.909 43.478 0.00 0.00 0.00 3.18
1482 1690 4.080863 TCTCATCTGCTCCTTTTTCTACCC 60.081 45.833 0.00 0.00 0.00 3.69
1483 1691 2.762535 TCTGCTCCTTTTTCTACCCG 57.237 50.000 0.00 0.00 0.00 5.28
1485 1693 2.028385 TCTGCTCCTTTTTCTACCCGAC 60.028 50.000 0.00 0.00 0.00 4.79
1486 1694 1.975680 TGCTCCTTTTTCTACCCGACT 59.024 47.619 0.00 0.00 0.00 4.18
1487 1695 2.370849 TGCTCCTTTTTCTACCCGACTT 59.629 45.455 0.00 0.00 0.00 3.01
1488 1696 2.742589 GCTCCTTTTTCTACCCGACTTG 59.257 50.000 0.00 0.00 0.00 3.16
1489 1697 3.335579 CTCCTTTTTCTACCCGACTTGG 58.664 50.000 0.00 0.00 37.55 3.61
1490 1698 2.974099 TCCTTTTTCTACCCGACTTGGA 59.026 45.455 0.00 0.00 42.00 3.53
1491 1699 3.391955 TCCTTTTTCTACCCGACTTGGAA 59.608 43.478 0.00 0.00 42.00 3.53
1492 1700 4.139038 CCTTTTTCTACCCGACTTGGAAA 58.861 43.478 0.00 0.00 42.00 3.13
1549 1757 3.170717 TCCGTTCCTCTGTTACTGGAAT 58.829 45.455 7.86 0.00 41.23 3.01
1550 1758 3.194968 TCCGTTCCTCTGTTACTGGAATC 59.805 47.826 7.86 3.42 41.23 2.52
1551 1759 3.179830 CGTTCCTCTGTTACTGGAATCG 58.820 50.000 7.86 9.07 41.23 3.34
1552 1760 3.522553 GTTCCTCTGTTACTGGAATCGG 58.477 50.000 7.86 0.00 41.23 4.18
1553 1761 1.480954 TCCTCTGTTACTGGAATCGGC 59.519 52.381 0.00 0.00 0.00 5.54
1554 1762 1.482593 CCTCTGTTACTGGAATCGGCT 59.517 52.381 0.00 0.00 0.00 5.52
1573 1781 2.494870 GCTGGCTGTTTTCTTGGATGAT 59.505 45.455 0.00 0.00 0.00 2.45
1574 1782 3.675228 GCTGGCTGTTTTCTTGGATGATG 60.675 47.826 0.00 0.00 0.00 3.07
1575 1783 3.760151 CTGGCTGTTTTCTTGGATGATGA 59.240 43.478 0.00 0.00 0.00 2.92
1577 1785 4.773674 TGGCTGTTTTCTTGGATGATGAAT 59.226 37.500 0.00 0.00 0.00 2.57
1579 1787 5.105635 GGCTGTTTTCTTGGATGATGAATCA 60.106 40.000 0.00 0.00 41.70 2.57
1597 1806 2.025155 TCAGCCTGCTACTGCTAGTAC 58.975 52.381 0.00 0.00 40.48 2.73
1677 1899 1.243902 TGTTTTGATTGACTCCGGGC 58.756 50.000 0.00 0.00 0.00 6.13
1700 1928 2.315038 CTTGCTGCGCTTCCCGATTC 62.315 60.000 9.73 0.00 40.02 2.52
1721 1960 1.153549 CTAGCCGCACCTCCACTTC 60.154 63.158 0.00 0.00 0.00 3.01
1749 1988 4.497507 GGACTGTTGCTAGTTTTTGGTCAC 60.498 45.833 0.00 0.00 0.00 3.67
1750 1989 4.013728 ACTGTTGCTAGTTTTTGGTCACA 58.986 39.130 0.00 0.00 0.00 3.58
1751 1990 4.461081 ACTGTTGCTAGTTTTTGGTCACAA 59.539 37.500 0.00 0.00 34.07 3.33
1752 1991 4.992688 TGTTGCTAGTTTTTGGTCACAAG 58.007 39.130 0.00 0.00 37.97 3.16
1753 1992 4.702612 TGTTGCTAGTTTTTGGTCACAAGA 59.297 37.500 0.00 0.00 37.97 3.02
1754 1993 5.359576 TGTTGCTAGTTTTTGGTCACAAGAT 59.640 36.000 0.00 0.00 37.97 2.40
1755 1994 5.437289 TGCTAGTTTTTGGTCACAAGATG 57.563 39.130 0.00 0.00 37.97 2.90
1833 2113 8.293699 GGGTAAACCTTTAGAATGATTGATGT 57.706 34.615 0.00 0.00 35.85 3.06
1835 2115 8.739972 GGTAAACCTTTAGAATGATTGATGTGT 58.260 33.333 0.00 0.00 0.00 3.72
1838 2118 9.480053 AAACCTTTAGAATGATTGATGTGTTTG 57.520 29.630 0.00 0.00 0.00 2.93
1840 2120 8.517878 ACCTTTAGAATGATTGATGTGTTTGAG 58.482 33.333 0.00 0.00 0.00 3.02
1841 2121 7.487189 CCTTTAGAATGATTGATGTGTTTGAGC 59.513 37.037 0.00 0.00 0.00 4.26
1847 2127 0.895100 TGATGTGTTTGAGCCAGGGC 60.895 55.000 0.97 0.97 42.33 5.19
1870 2150 4.437239 CTGGAGTAGCAGGACAAACATAG 58.563 47.826 0.00 0.00 0.00 2.23
1873 2153 4.081642 GGAGTAGCAGGACAAACATAGTCA 60.082 45.833 0.00 0.00 37.74 3.41
1874 2154 5.078411 AGTAGCAGGACAAACATAGTCAG 57.922 43.478 0.00 0.00 37.74 3.51
1875 2155 4.528596 AGTAGCAGGACAAACATAGTCAGT 59.471 41.667 0.00 0.00 37.74 3.41
1876 2156 3.931578 AGCAGGACAAACATAGTCAGTC 58.068 45.455 0.00 0.00 37.74 3.51
1885 2165 7.309867 GGACAAACATAGTCAGTCCTCTTTAGA 60.310 40.741 11.44 0.00 44.10 2.10
1896 2176 6.600032 TCAGTCCTCTTTAGAGATACACTGAC 59.400 42.308 17.51 11.31 44.74 3.51
1897 2177 5.587043 AGTCCTCTTTAGAGATACACTGACG 59.413 44.000 8.32 0.00 44.74 4.35
1913 2198 0.613777 GACGGTCATTCCCCACTTCT 59.386 55.000 2.62 0.00 0.00 2.85
1917 2202 2.418746 CGGTCATTCCCCACTTCTACAG 60.419 54.545 0.00 0.00 0.00 2.74
1924 2209 5.843019 TTCCCCACTTCTACAGAGATTTT 57.157 39.130 0.00 0.00 0.00 1.82
1926 2211 4.225267 TCCCCACTTCTACAGAGATTTTCC 59.775 45.833 0.00 0.00 0.00 3.13
1929 2214 5.877564 CCCACTTCTACAGAGATTTTCCTTC 59.122 44.000 0.00 0.00 0.00 3.46
1930 2215 5.877564 CCACTTCTACAGAGATTTTCCTTCC 59.122 44.000 0.00 0.00 0.00 3.46
1931 2216 6.296145 CCACTTCTACAGAGATTTTCCTTCCT 60.296 42.308 0.00 0.00 0.00 3.36
1932 2217 6.816140 CACTTCTACAGAGATTTTCCTTCCTC 59.184 42.308 0.00 0.00 0.00 3.71
1937 2222 8.097662 TCTACAGAGATTTTCCTTCCTCTTTTC 58.902 37.037 0.00 0.00 34.08 2.29
1962 2252 7.336931 TCTTTTTACTCTGCTCTGTTTCTGTTT 59.663 33.333 0.00 0.00 0.00 2.83
1963 2253 7.391148 TTTTACTCTGCTCTGTTTCTGTTTT 57.609 32.000 0.00 0.00 0.00 2.43
1964 2254 4.889832 ACTCTGCTCTGTTTCTGTTTTG 57.110 40.909 0.00 0.00 0.00 2.44
1966 2256 4.095483 ACTCTGCTCTGTTTCTGTTTTGTG 59.905 41.667 0.00 0.00 0.00 3.33
1967 2257 4.009675 TCTGCTCTGTTTCTGTTTTGTGT 58.990 39.130 0.00 0.00 0.00 3.72
1968 2258 4.095410 TGCTCTGTTTCTGTTTTGTGTG 57.905 40.909 0.00 0.00 0.00 3.82
1972 2262 5.060940 GCTCTGTTTCTGTTTTGTGTGTTTC 59.939 40.000 0.00 0.00 0.00 2.78
1973 2263 6.325919 TCTGTTTCTGTTTTGTGTGTTTCT 57.674 33.333 0.00 0.00 0.00 2.52
1975 2265 6.861055 TCTGTTTCTGTTTTGTGTGTTTCTTC 59.139 34.615 0.00 0.00 0.00 2.87
1976 2266 6.507900 TGTTTCTGTTTTGTGTGTTTCTTCA 58.492 32.000 0.00 0.00 0.00 3.02
1978 2268 7.116090 TGTTTCTGTTTTGTGTGTTTCTTCATG 59.884 33.333 0.00 0.00 0.00 3.07
1980 2270 6.321717 TCTGTTTTGTGTGTTTCTTCATGTC 58.678 36.000 0.00 0.00 0.00 3.06
1987 2281 3.565482 TGTGTTTCTTCATGTCTTGGCTC 59.435 43.478 0.00 0.00 0.00 4.70
1989 2283 3.565482 TGTTTCTTCATGTCTTGGCTCAC 59.435 43.478 0.00 0.00 0.00 3.51
2006 2301 4.494484 GCTCACCATGTTTTCCATTTACC 58.506 43.478 0.00 0.00 0.00 2.85
2009 2304 6.339587 TCACCATGTTTTCCATTTACCTTC 57.660 37.500 0.00 0.00 0.00 3.46
2081 2376 2.098607 TCTATCGGCGTTAACAGTGAGG 59.901 50.000 6.85 0.00 0.00 3.86
2084 2379 1.135199 TCGGCGTTAACAGTGAGGATC 60.135 52.381 6.85 0.00 0.00 3.36
2087 2382 3.335579 GGCGTTAACAGTGAGGATCTTT 58.664 45.455 6.39 0.00 34.92 2.52
2089 2384 4.329256 GGCGTTAACAGTGAGGATCTTTAC 59.671 45.833 6.39 0.00 34.92 2.01
2090 2385 4.031426 GCGTTAACAGTGAGGATCTTTACG 59.969 45.833 6.39 0.00 34.92 3.18
2091 2386 5.396484 CGTTAACAGTGAGGATCTTTACGA 58.604 41.667 6.39 0.00 34.92 3.43
2093 2388 6.183359 CGTTAACAGTGAGGATCTTTACGAAC 60.183 42.308 6.39 0.00 34.92 3.95
2113 2408 6.641314 ACGAACGCTCTAATCTAATGTAATGG 59.359 38.462 0.00 0.00 0.00 3.16
2162 2461 6.127897 CCAGTTCAAAATTCTAGGTGATGACC 60.128 42.308 0.00 0.00 43.52 4.02
2180 2479 3.120041 GACCGCTTTATCTGCTTCTCTC 58.880 50.000 0.00 0.00 0.00 3.20
2234 2533 8.984891 TGTTTTCATTTGCATATTCACCTTAG 57.015 30.769 0.00 0.00 0.00 2.18
2236 2535 8.863049 GTTTTCATTTGCATATTCACCTTAGTG 58.137 33.333 0.00 0.00 46.00 2.74
2309 2611 4.161876 ACACTGTGGTGGTGGTTAGTATA 58.838 43.478 13.09 0.00 46.85 1.47
2310 2612 4.781087 ACACTGTGGTGGTGGTTAGTATAT 59.219 41.667 13.09 0.00 46.85 0.86
2394 2696 6.998968 ATTATGCTAAGCTCTATCCAATGC 57.001 37.500 0.00 0.00 0.00 3.56
2417 2719 6.649973 TGCCAATACTTGATGGAATTGTTTTG 59.350 34.615 0.00 0.00 39.12 2.44
2448 2750 4.976224 TGAGCATGGAGAATCACATTTG 57.024 40.909 0.00 0.00 36.25 2.32
2473 2778 5.297569 ACCCTTGTCCTGATTATAGCTTC 57.702 43.478 0.00 0.00 0.00 3.86
2477 2782 6.115446 CCTTGTCCTGATTATAGCTTCACAA 58.885 40.000 0.00 0.00 0.00 3.33
2537 2842 4.038642 GTGTATTTGTTGGACCAATGGTGT 59.961 41.667 10.84 0.00 35.25 4.16
2616 2921 4.201657 TGTTGTGATGATGATAGGCCAAG 58.798 43.478 5.01 0.00 0.00 3.61
2661 2966 2.680841 TGCAAGAAAGCACAGTTAACGT 59.319 40.909 0.00 0.00 40.11 3.99
2662 2967 3.035942 GCAAGAAAGCACAGTTAACGTG 58.964 45.455 19.53 19.53 37.43 4.49
2665 2970 4.531659 AGAAAGCACAGTTAACGTGTTC 57.468 40.909 22.48 19.39 36.71 3.18
2669 2974 4.273005 AGCACAGTTAACGTGTTCTTTG 57.727 40.909 22.48 8.43 36.71 2.77
2671 2976 4.155280 AGCACAGTTAACGTGTTCTTTGTT 59.845 37.500 22.48 5.09 36.71 2.83
2675 2980 5.188194 CAGTTAACGTGTTCTTTGTTCGAG 58.812 41.667 0.00 0.00 0.00 4.04
2810 3115 5.703130 TGCTTGTTTGCTTTTTAGTTGGTTT 59.297 32.000 0.00 0.00 0.00 3.27
3015 3320 3.247006 TCAGGATGCGGACTTTAAGAC 57.753 47.619 0.00 0.00 34.76 3.01
3068 3373 3.052082 GTGGCTCAGCGCATGTGT 61.052 61.111 11.47 0.00 41.67 3.72
3072 3377 3.031964 GCTCAGCGCATGTGTGACC 62.032 63.158 11.47 0.00 38.92 4.02
3081 3386 1.259609 CATGTGTGACCTGCCCATTT 58.740 50.000 0.00 0.00 0.00 2.32
3094 3399 5.960202 ACCTGCCCATTTAGATCATCTTTTT 59.040 36.000 0.00 0.00 0.00 1.94
3154 3459 7.874940 TCTCCATTTTCACACTCAAAATGTAG 58.125 34.615 13.91 9.46 44.54 2.74
3162 3476 7.984422 TCACACTCAAAATGTAGATGTCATT 57.016 32.000 0.00 0.00 37.14 2.57
3189 3503 4.502105 AAATGCAAAACACCTTTTCCCT 57.498 36.364 0.00 0.00 0.00 4.20
3194 3508 3.871006 GCAAAACACCTTTTCCCTTTCAG 59.129 43.478 0.00 0.00 0.00 3.02
3307 3621 2.823154 TGTTGCTTGCCCCAAGTTATAC 59.177 45.455 6.80 2.01 42.77 1.47
3387 3701 8.511126 ACCTCCATGTATATCCCTTTTTGTTAT 58.489 33.333 0.00 0.00 0.00 1.89
3388 3702 9.367160 CCTCCATGTATATCCCTTTTTGTTATT 57.633 33.333 0.00 0.00 0.00 1.40
3470 3785 1.421646 CTGAGGGGTGAGTGGAAACTT 59.578 52.381 0.00 0.00 0.00 2.66
3479 3794 3.791353 GTGAGTGGAAACTTGCTTTTTCG 59.209 43.478 0.00 0.00 34.34 3.46
3523 3839 6.940298 TGACAAGTTACTATCCTTTCTTTGGG 59.060 38.462 0.00 0.00 0.00 4.12
3567 3883 4.808364 GCTATGTGCTCTCTTTAGTTCAGG 59.192 45.833 0.00 0.00 38.95 3.86
3579 3895 8.043710 TCTCTTTAGTTCAGGAGATCCAATTTC 58.956 37.037 0.92 0.00 38.89 2.17
3580 3896 7.112779 TCTTTAGTTCAGGAGATCCAATTTCC 58.887 38.462 0.92 0.00 38.89 3.13
3581 3897 4.242336 AGTTCAGGAGATCCAATTTCCC 57.758 45.455 0.92 0.00 38.89 3.97
3582 3898 3.053320 AGTTCAGGAGATCCAATTTCCCC 60.053 47.826 0.92 0.00 38.89 4.81
3654 3971 4.800784 TCTCGTGTGAAATGTGTCGATTA 58.199 39.130 0.00 0.00 0.00 1.75
3686 4003 7.555195 TGCATGATGATAAAGACAAGATTGAGT 59.445 33.333 0.00 0.00 0.00 3.41
3692 4009 9.979578 ATGATAAAGACAAGATTGAGTAGCTAG 57.020 33.333 0.00 0.00 0.00 3.42
3693 4010 9.190317 TGATAAAGACAAGATTGAGTAGCTAGA 57.810 33.333 0.00 0.00 0.00 2.43
3811 4129 5.417754 ACTCAGTCATCAACACATGAGAT 57.582 39.130 0.00 0.00 42.53 2.75
3842 4160 5.961272 AGGACGAGAATTTTGTTTGTTTGT 58.039 33.333 0.00 0.00 0.00 2.83
3879 4197 2.787994 CACATGCTCCAGACCTCTTTT 58.212 47.619 0.00 0.00 0.00 2.27
3880 4198 2.486982 CACATGCTCCAGACCTCTTTTG 59.513 50.000 0.00 0.00 0.00 2.44
3881 4199 2.089980 CATGCTCCAGACCTCTTTTGG 58.910 52.381 0.00 0.00 0.00 3.28
3883 4201 0.962855 GCTCCAGACCTCTTTTGGGC 60.963 60.000 0.00 0.00 34.64 5.36
4207 4527 0.875059 GAGCCAGGTAAGTTGCACAC 59.125 55.000 0.00 0.00 0.00 3.82
4286 4606 8.217799 TGATCTGGTATATTCCTTACCCTTTTG 58.782 37.037 0.00 0.00 38.69 2.44
4310 4630 4.226427 TCTCAGATTGCTACAATTGGCT 57.774 40.909 10.83 0.00 0.00 4.75
4352 4672 2.652095 GGTGTCGTCATCGGGGGAA 61.652 63.158 0.00 0.00 37.69 3.97
4365 4685 1.649271 GGGGGAATCATGTGAGGGCT 61.649 60.000 0.00 0.00 0.00 5.19
4414 4734 2.229675 TCACTCTGTGTTGCTGACAG 57.770 50.000 0.00 0.00 41.96 3.51
4419 4739 1.486310 TCTGTGTTGCTGACAGAACCT 59.514 47.619 6.65 0.00 45.38 3.50
4564 4884 3.181440 TGCTCCCTCTGAACAACTCAAAT 60.181 43.478 0.00 0.00 32.17 2.32
4580 4903 5.316167 ACTCAAATGCCTTCACATCTAACA 58.684 37.500 0.00 0.00 0.00 2.41
4636 4959 2.525368 GGGGTGCTATTCCTGTTGTTT 58.475 47.619 0.00 0.00 0.00 2.83
4660 4983 3.129287 GCATAATGTCCTTGTTGTCAGGG 59.871 47.826 0.00 0.00 41.43 4.45
4889 5226 1.607628 CTATGCTGATGGCTTTCCTGC 59.392 52.381 0.00 0.00 42.39 4.85
4944 5281 5.251764 ACTGCTGAGAAATTGCTGTAGAAT 58.748 37.500 0.00 0.00 37.17 2.40
4956 5293 2.283884 GCTGTAGAATTCTCTTGCTCGC 59.716 50.000 12.24 2.98 32.70 5.03
4961 5298 4.399004 AGAATTCTCTTGCTCGCTGTAT 57.601 40.909 0.88 0.00 0.00 2.29
5064 5415 8.825667 TTTTGTCTTGCTTAGTTTTCTTTGTT 57.174 26.923 0.00 0.00 0.00 2.83
5097 5448 7.453393 AGGGTTGATACATCATACATTACTGG 58.547 38.462 0.00 0.00 36.56 4.00
5100 5451 7.307989 GGTTGATACATCATACATTACTGGTGC 60.308 40.741 0.00 0.00 36.56 5.01
5101 5452 6.230472 TGATACATCATACATTACTGGTGCC 58.770 40.000 0.00 0.00 0.00 5.01
5102 5453 3.466836 ACATCATACATTACTGGTGCCG 58.533 45.455 0.00 0.00 0.00 5.69
5103 5454 1.948104 TCATACATTACTGGTGCCGC 58.052 50.000 0.00 0.00 0.00 6.53
5104 5455 1.208293 TCATACATTACTGGTGCCGCA 59.792 47.619 0.00 0.00 0.00 5.69
5105 5456 1.599071 CATACATTACTGGTGCCGCAG 59.401 52.381 0.00 0.00 0.00 5.18
5106 5457 0.611200 TACATTACTGGTGCCGCAGT 59.389 50.000 0.00 0.00 35.60 4.40
5107 5458 0.611200 ACATTACTGGTGCCGCAGTA 59.389 50.000 0.00 0.00 33.26 2.74
5108 5459 1.006832 CATTACTGGTGCCGCAGTAC 58.993 55.000 0.00 0.00 34.10 2.73
5109 5460 0.902531 ATTACTGGTGCCGCAGTACT 59.097 50.000 0.00 0.00 34.10 2.73
5110 5461 0.037697 TTACTGGTGCCGCAGTACTG 60.038 55.000 18.93 18.93 34.10 2.74
5111 5462 1.183030 TACTGGTGCCGCAGTACTGT 61.183 55.000 23.44 3.55 33.26 3.55
5112 5463 1.183030 ACTGGTGCCGCAGTACTGTA 61.183 55.000 23.44 6.02 0.00 2.74
5113 5464 0.175760 CTGGTGCCGCAGTACTGTAT 59.824 55.000 23.44 0.00 0.00 2.29
5114 5465 0.174845 TGGTGCCGCAGTACTGTATC 59.825 55.000 23.44 12.80 0.00 2.24
5142 5508 0.532862 ACAGAACCTGTCGTGCCTTG 60.533 55.000 0.00 0.00 41.21 3.61
5167 5534 7.817478 TGAAACCATCAGGCTACATATTATACG 59.183 37.037 0.00 0.00 39.06 3.06
5173 5540 9.452065 CATCAGGCTACATATTATACGTCATAC 57.548 37.037 0.00 0.00 0.00 2.39
5178 5545 9.452065 GGCTACATATTATACGTCATACATCTG 57.548 37.037 0.00 0.00 0.00 2.90
5192 5561 7.196331 GTCATACATCTGCCTTAAAACAATCC 58.804 38.462 0.00 0.00 0.00 3.01
5239 5864 2.975851 GCAAGTGACGCTTTGATTGAAG 59.024 45.455 0.00 0.00 34.69 3.02
5261 5886 9.944376 TGAAGTTTTAGTGAATTCTGCTACTAT 57.056 29.630 7.05 0.00 0.00 2.12
5270 5895 8.410141 AGTGAATTCTGCTACTATAGAACACTC 58.590 37.037 6.78 0.00 36.41 3.51
5271 5896 7.650104 GTGAATTCTGCTACTATAGAACACTCC 59.350 40.741 6.78 0.00 35.91 3.85
5287 5917 6.706270 AGAACACTCCACATTTAGTTGTACAG 59.294 38.462 0.00 0.00 0.00 2.74
5333 8461 0.807667 ATGCTTCGCTGCTTCCGTAG 60.808 55.000 0.00 0.00 0.00 3.51
5386 8515 8.907222 AGTTTGAAATTTGAGCCATGTAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
5424 8553 4.342378 ACTGATGTAGTACCAGCCAGTATG 59.658 45.833 10.34 0.00 38.04 2.39
5433 8562 4.679373 ACCAGCCAGTATGAATACTCTG 57.321 45.455 10.24 10.24 41.44 3.35
5466 8595 7.818446 GGGTACTAGTAGGAGAAAAACTGAAAG 59.182 40.741 1.87 0.00 42.29 2.62
5490 8619 5.678955 AGAATACGGGATATTAAGAGGGC 57.321 43.478 0.00 0.00 33.37 5.19
5512 8641 4.438608 GCGATGTTCTATGGTCATGCAAAA 60.439 41.667 0.00 0.00 0.00 2.44
5513 8642 5.030295 CGATGTTCTATGGTCATGCAAAAC 58.970 41.667 0.00 0.00 0.00 2.43
5632 8761 8.655651 TTTCAAATATGGTTTCCACAAAGTTC 57.344 30.769 0.00 0.00 35.80 3.01
5636 8765 7.454260 AATATGGTTTCCACAAAGTTCTCTC 57.546 36.000 0.00 0.00 35.80 3.20
5654 8783 4.282449 TCTCTCTGAATGTTGGTTTCCGTA 59.718 41.667 0.00 0.00 0.00 4.02
5657 8786 4.647611 TCTGAATGTTGGTTTCCGTATGT 58.352 39.130 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.872511 TCACAAATGTCATTCCATGGC 57.127 42.857 6.96 0.00 34.88 4.40
5 6 5.333299 ACATCACAAATGTCATTCCATGG 57.667 39.130 4.97 4.97 0.00 3.66
6 7 7.977293 ACAATACATCACAAATGTCATTCCATG 59.023 33.333 0.00 0.00 33.76 3.66
7 8 8.070034 ACAATACATCACAAATGTCATTCCAT 57.930 30.769 0.00 0.00 33.76 3.41
8 9 7.176340 TGACAATACATCACAAATGTCATTCCA 59.824 33.333 0.00 0.00 41.39 3.53
9 10 7.537715 TGACAATACATCACAAATGTCATTCC 58.462 34.615 0.00 0.00 41.39 3.01
10 11 8.969121 TTGACAATACATCACAAATGTCATTC 57.031 30.769 7.17 0.00 44.45 2.67
11 12 9.761504 TTTTGACAATACATCACAAATGTCATT 57.238 25.926 7.17 0.00 44.45 2.57
12 13 9.761504 TTTTTGACAATACATCACAAATGTCAT 57.238 25.926 7.17 0.00 44.45 3.06
13 14 9.029243 GTTTTTGACAATACATCACAAATGTCA 57.971 29.630 2.54 2.54 43.70 3.58
14 15 8.487176 GGTTTTTGACAATACATCACAAATGTC 58.513 33.333 0.00 0.00 38.08 3.06
15 16 7.984050 TGGTTTTTGACAATACATCACAAATGT 59.016 29.630 0.00 0.00 30.70 2.71
16 17 8.362860 TGGTTTTTGACAATACATCACAAATG 57.637 30.769 0.00 0.00 30.70 2.32
17 18 8.954950 TTGGTTTTTGACAATACATCACAAAT 57.045 26.923 0.00 0.00 30.70 2.32
18 19 8.253810 TCTTGGTTTTTGACAATACATCACAAA 58.746 29.630 0.00 0.00 0.00 2.83
19 20 7.776107 TCTTGGTTTTTGACAATACATCACAA 58.224 30.769 0.00 0.00 0.00 3.33
20 21 7.068103 ACTCTTGGTTTTTGACAATACATCACA 59.932 33.333 0.00 0.00 0.00 3.58
21 22 7.379529 CACTCTTGGTTTTTGACAATACATCAC 59.620 37.037 0.00 0.00 0.00 3.06
22 23 7.424803 CACTCTTGGTTTTTGACAATACATCA 58.575 34.615 0.00 0.00 0.00 3.07
23 24 6.863126 CCACTCTTGGTTTTTGACAATACATC 59.137 38.462 0.00 0.00 38.23 3.06
24 25 6.738453 GCCACTCTTGGTTTTTGACAATACAT 60.738 38.462 0.00 0.00 45.98 2.29
25 26 5.451242 GCCACTCTTGGTTTTTGACAATACA 60.451 40.000 0.00 0.00 45.98 2.29
26 27 4.982295 GCCACTCTTGGTTTTTGACAATAC 59.018 41.667 0.00 0.00 45.98 1.89
27 28 4.646945 TGCCACTCTTGGTTTTTGACAATA 59.353 37.500 0.00 0.00 45.98 1.90
28 29 3.450457 TGCCACTCTTGGTTTTTGACAAT 59.550 39.130 0.00 0.00 45.98 2.71
29 30 2.828520 TGCCACTCTTGGTTTTTGACAA 59.171 40.909 0.00 0.00 45.98 3.18
30 31 2.426738 CTGCCACTCTTGGTTTTTGACA 59.573 45.455 0.00 0.00 45.98 3.58
31 32 2.687935 TCTGCCACTCTTGGTTTTTGAC 59.312 45.455 0.00 0.00 45.98 3.18
32 33 3.011566 TCTGCCACTCTTGGTTTTTGA 57.988 42.857 0.00 0.00 45.98 2.69
33 34 3.131046 ACTTCTGCCACTCTTGGTTTTTG 59.869 43.478 0.00 0.00 45.98 2.44
34 35 3.131046 CACTTCTGCCACTCTTGGTTTTT 59.869 43.478 0.00 0.00 45.98 1.94
35 36 2.689983 CACTTCTGCCACTCTTGGTTTT 59.310 45.455 0.00 0.00 45.98 2.43
36 37 2.092429 TCACTTCTGCCACTCTTGGTTT 60.092 45.455 0.00 0.00 45.98 3.27
37 38 1.490490 TCACTTCTGCCACTCTTGGTT 59.510 47.619 0.00 0.00 45.98 3.67
38 39 1.131638 TCACTTCTGCCACTCTTGGT 58.868 50.000 0.00 0.00 45.98 3.67
40 41 4.511527 ACATATCACTTCTGCCACTCTTG 58.488 43.478 0.00 0.00 0.00 3.02
41 42 4.833478 ACATATCACTTCTGCCACTCTT 57.167 40.909 0.00 0.00 0.00 2.85
42 43 4.833478 AACATATCACTTCTGCCACTCT 57.167 40.909 0.00 0.00 0.00 3.24
43 44 6.985188 TTTAACATATCACTTCTGCCACTC 57.015 37.500 0.00 0.00 0.00 3.51
44 45 7.944729 AATTTAACATATCACTTCTGCCACT 57.055 32.000 0.00 0.00 0.00 4.00
59 60 9.573166 TGCTTATGCCACTCTATAATTTAACAT 57.427 29.630 0.00 0.00 38.71 2.71
60 61 8.972458 TGCTTATGCCACTCTATAATTTAACA 57.028 30.769 0.00 0.00 38.71 2.41
63 64 9.627123 ACTTTGCTTATGCCACTCTATAATTTA 57.373 29.630 0.00 0.00 38.71 1.40
64 65 8.525290 ACTTTGCTTATGCCACTCTATAATTT 57.475 30.769 0.00 0.00 38.71 1.82
65 66 9.277783 CTACTTTGCTTATGCCACTCTATAATT 57.722 33.333 0.00 0.00 38.71 1.40
66 67 7.880195 CCTACTTTGCTTATGCCACTCTATAAT 59.120 37.037 0.00 0.00 38.71 1.28
67 68 7.147549 ACCTACTTTGCTTATGCCACTCTATAA 60.148 37.037 0.00 0.00 38.71 0.98
68 69 6.326583 ACCTACTTTGCTTATGCCACTCTATA 59.673 38.462 0.00 0.00 38.71 1.31
69 70 5.131142 ACCTACTTTGCTTATGCCACTCTAT 59.869 40.000 0.00 0.00 38.71 1.98
70 71 4.469945 ACCTACTTTGCTTATGCCACTCTA 59.530 41.667 0.00 0.00 38.71 2.43
71 72 3.264450 ACCTACTTTGCTTATGCCACTCT 59.736 43.478 0.00 0.00 38.71 3.24
72 73 3.610911 ACCTACTTTGCTTATGCCACTC 58.389 45.455 0.00 0.00 38.71 3.51
73 74 3.721087 ACCTACTTTGCTTATGCCACT 57.279 42.857 0.00 0.00 38.71 4.00
74 75 5.890424 TTTACCTACTTTGCTTATGCCAC 57.110 39.130 0.00 0.00 38.71 5.01
75 76 5.105917 GCTTTTACCTACTTTGCTTATGCCA 60.106 40.000 0.00 0.00 38.71 4.92
76 77 5.125578 AGCTTTTACCTACTTTGCTTATGCC 59.874 40.000 0.00 0.00 38.71 4.40
77 78 6.196079 AGCTTTTACCTACTTTGCTTATGC 57.804 37.500 0.00 0.00 40.20 3.14
78 79 8.718102 TCTAGCTTTTACCTACTTTGCTTATG 57.282 34.615 0.00 0.00 0.00 1.90
79 80 8.541234 ACTCTAGCTTTTACCTACTTTGCTTAT 58.459 33.333 0.00 0.00 0.00 1.73
80 81 7.817962 CACTCTAGCTTTTACCTACTTTGCTTA 59.182 37.037 0.00 0.00 0.00 3.09
81 82 6.651225 CACTCTAGCTTTTACCTACTTTGCTT 59.349 38.462 0.00 0.00 0.00 3.91
82 83 6.166982 CACTCTAGCTTTTACCTACTTTGCT 58.833 40.000 0.00 0.00 0.00 3.91
83 84 5.351740 CCACTCTAGCTTTTACCTACTTTGC 59.648 44.000 0.00 0.00 0.00 3.68
84 85 5.351740 GCCACTCTAGCTTTTACCTACTTTG 59.648 44.000 0.00 0.00 0.00 2.77
85 86 5.012768 TGCCACTCTAGCTTTTACCTACTTT 59.987 40.000 0.00 0.00 0.00 2.66
86 87 4.530946 TGCCACTCTAGCTTTTACCTACTT 59.469 41.667 0.00 0.00 0.00 2.24
87 88 4.094476 TGCCACTCTAGCTTTTACCTACT 58.906 43.478 0.00 0.00 0.00 2.57
88 89 4.467198 TGCCACTCTAGCTTTTACCTAC 57.533 45.455 0.00 0.00 0.00 3.18
89 90 5.492855 TTTGCCACTCTAGCTTTTACCTA 57.507 39.130 0.00 0.00 0.00 3.08
90 91 4.367039 TTTGCCACTCTAGCTTTTACCT 57.633 40.909 0.00 0.00 0.00 3.08
91 92 5.220381 GTTTTTGCCACTCTAGCTTTTACC 58.780 41.667 0.00 0.00 0.00 2.85
92 93 5.827666 TGTTTTTGCCACTCTAGCTTTTAC 58.172 37.500 0.00 0.00 0.00 2.01
93 94 6.458232 TTGTTTTTGCCACTCTAGCTTTTA 57.542 33.333 0.00 0.00 0.00 1.52
94 95 5.337578 TTGTTTTTGCCACTCTAGCTTTT 57.662 34.783 0.00 0.00 0.00 2.27
95 96 5.105351 ACTTTGTTTTTGCCACTCTAGCTTT 60.105 36.000 0.00 0.00 0.00 3.51
96 97 4.402474 ACTTTGTTTTTGCCACTCTAGCTT 59.598 37.500 0.00 0.00 0.00 3.74
97 98 3.954258 ACTTTGTTTTTGCCACTCTAGCT 59.046 39.130 0.00 0.00 0.00 3.32
98 99 4.307443 ACTTTGTTTTTGCCACTCTAGC 57.693 40.909 0.00 0.00 0.00 3.42
99 100 7.035612 AGAAAACTTTGTTTTTGCCACTCTAG 58.964 34.615 9.36 0.00 0.00 2.43
100 101 6.930731 AGAAAACTTTGTTTTTGCCACTCTA 58.069 32.000 9.36 0.00 0.00 2.43
101 102 5.793817 AGAAAACTTTGTTTTTGCCACTCT 58.206 33.333 9.36 0.00 0.00 3.24
102 103 5.869344 AGAGAAAACTTTGTTTTTGCCACTC 59.131 36.000 9.36 10.16 0.00 3.51
103 104 5.793817 AGAGAAAACTTTGTTTTTGCCACT 58.206 33.333 9.36 2.81 0.00 4.00
104 105 6.480524 AAGAGAAAACTTTGTTTTTGCCAC 57.519 33.333 9.36 0.00 0.00 5.01
105 106 7.358830 CAAAAGAGAAAACTTTGTTTTTGCCA 58.641 30.769 9.36 0.00 39.57 4.92
106 107 6.305399 GCAAAAGAGAAAACTTTGTTTTTGCC 59.695 34.615 16.57 7.38 46.31 4.52
107 108 7.252070 GCAAAAGAGAAAACTTTGTTTTTGC 57.748 32.000 13.67 13.67 46.14 3.68
108 109 9.449550 AAAGCAAAAGAGAAAACTTTGTTTTTG 57.550 25.926 9.36 6.38 39.57 2.44
109 110 9.449550 CAAAGCAAAAGAGAAAACTTTGTTTTT 57.550 25.926 9.36 0.00 39.25 1.94
110 111 8.075574 CCAAAGCAAAAGAGAAAACTTTGTTTT 58.924 29.630 7.97 7.97 41.34 2.43
111 112 7.228507 ACCAAAGCAAAAGAGAAAACTTTGTTT 59.771 29.630 11.13 0.00 41.34 2.83
112 113 6.710295 ACCAAAGCAAAAGAGAAAACTTTGTT 59.290 30.769 11.13 0.00 41.34 2.83
113 114 6.230472 ACCAAAGCAAAAGAGAAAACTTTGT 58.770 32.000 11.13 0.00 41.34 2.83
114 115 6.726258 ACCAAAGCAAAAGAGAAAACTTTG 57.274 33.333 0.00 0.00 42.14 2.77
115 116 8.040727 ACATACCAAAGCAAAAGAGAAAACTTT 58.959 29.630 0.00 0.00 41.09 2.66
116 117 7.555965 ACATACCAAAGCAAAAGAGAAAACTT 58.444 30.769 0.00 0.00 0.00 2.66
117 118 7.112452 ACATACCAAAGCAAAAGAGAAAACT 57.888 32.000 0.00 0.00 0.00 2.66
118 119 7.770801 AACATACCAAAGCAAAAGAGAAAAC 57.229 32.000 0.00 0.00 0.00 2.43
119 120 8.785329 AAAACATACCAAAGCAAAAGAGAAAA 57.215 26.923 0.00 0.00 0.00 2.29
120 121 8.785329 AAAAACATACCAAAGCAAAAGAGAAA 57.215 26.923 0.00 0.00 0.00 2.52
150 151 1.960689 GGGCACAAGACCTTAGCAAAA 59.039 47.619 8.09 0.00 41.07 2.44
162 163 3.058914 CGTCTTCTTAAACAGGGCACAAG 60.059 47.826 0.00 0.00 0.00 3.16
167 168 3.363673 CGTTTCGTCTTCTTAAACAGGGC 60.364 47.826 0.00 0.00 33.67 5.19
168 169 4.053295 TCGTTTCGTCTTCTTAAACAGGG 58.947 43.478 0.00 0.00 33.67 4.45
169 170 4.374707 CGTCGTTTCGTCTTCTTAAACAGG 60.375 45.833 0.00 0.00 33.67 4.00
172 173 3.660132 GCCGTCGTTTCGTCTTCTTAAAC 60.660 47.826 0.00 0.00 0.00 2.01
175 176 1.001487 TGCCGTCGTTTCGTCTTCTTA 60.001 47.619 0.00 0.00 0.00 2.10
179 180 2.308039 GCTGCCGTCGTTTCGTCTT 61.308 57.895 0.00 0.00 0.00 3.01
182 183 2.279918 AAGCTGCCGTCGTTTCGT 60.280 55.556 0.00 0.00 0.00 3.85
186 187 1.798813 CTTTAAGAAGCTGCCGTCGTT 59.201 47.619 0.00 0.00 0.00 3.85
190 191 2.027192 TCCATCTTTAAGAAGCTGCCGT 60.027 45.455 0.00 0.00 32.75 5.68
193 194 6.372937 ACTTTACTCCATCTTTAAGAAGCTGC 59.627 38.462 0.00 0.00 32.75 5.25
194 195 7.913674 ACTTTACTCCATCTTTAAGAAGCTG 57.086 36.000 0.00 0.00 32.75 4.24
195 196 8.379331 AGAACTTTACTCCATCTTTAAGAAGCT 58.621 33.333 0.00 0.00 32.75 3.74
199 200 6.590292 CGCAGAACTTTACTCCATCTTTAAGA 59.410 38.462 0.00 0.00 0.00 2.10
227 228 2.032185 GATGTTAAACGCGCCTCCGG 62.032 60.000 5.73 0.00 34.32 5.14
229 230 0.743345 AGGATGTTAAACGCGCCTCC 60.743 55.000 5.73 0.97 0.00 4.30
230 231 0.651031 GAGGATGTTAAACGCGCCTC 59.349 55.000 5.73 7.80 35.63 4.70
231 232 1.082117 CGAGGATGTTAAACGCGCCT 61.082 55.000 5.73 0.50 0.00 5.52
232 233 1.347221 CGAGGATGTTAAACGCGCC 59.653 57.895 5.73 0.00 0.00 6.53
233 234 1.079875 TCCGAGGATGTTAAACGCGC 61.080 55.000 5.73 0.00 0.00 6.86
235 236 1.287425 CCTCCGAGGATGTTAAACGC 58.713 55.000 9.01 0.00 37.67 4.84
236 237 1.935933 CCCTCCGAGGATGTTAAACG 58.064 55.000 16.69 0.00 37.67 3.60
238 239 0.177141 CGCCCTCCGAGGATGTTAAA 59.823 55.000 16.69 0.00 37.67 1.52
240 241 1.380785 ACGCCCTCCGAGGATGTTA 60.381 57.895 16.69 0.00 37.67 2.41
241 242 2.683933 ACGCCCTCCGAGGATGTT 60.684 61.111 16.69 0.00 37.67 2.71
242 243 3.461773 CACGCCCTCCGAGGATGT 61.462 66.667 16.69 10.54 37.67 3.06
243 244 3.461773 ACACGCCCTCCGAGGATG 61.462 66.667 16.69 12.84 37.67 3.51
244 245 3.461773 CACACGCCCTCCGAGGAT 61.462 66.667 16.69 0.00 37.67 3.24
246 247 3.019003 ATTCACACGCCCTCCGAGG 62.019 63.158 7.56 7.56 41.02 4.63
248 249 2.264480 CATTCACACGCCCTCCGA 59.736 61.111 0.00 0.00 41.02 4.55
249 250 2.047274 ACATTCACACGCCCTCCG 60.047 61.111 0.00 0.00 44.21 4.63
250 251 1.302511 ACACATTCACACGCCCTCC 60.303 57.895 0.00 0.00 0.00 4.30
251 252 0.884704 ACACACATTCACACGCCCTC 60.885 55.000 0.00 0.00 0.00 4.30
253 254 0.884704 AGACACACATTCACACGCCC 60.885 55.000 0.00 0.00 0.00 6.13
254 255 0.512952 GAGACACACATTCACACGCC 59.487 55.000 0.00 0.00 0.00 5.68
264 280 2.017782 GAGATCCGCTAGAGACACACA 58.982 52.381 0.00 0.00 0.00 3.72
266 282 1.300481 CGAGATCCGCTAGAGACACA 58.700 55.000 0.00 0.00 0.00 3.72
274 290 3.396560 TCGAATTCTACGAGATCCGCTA 58.603 45.455 3.52 0.00 43.32 4.26
275 291 2.219458 TCGAATTCTACGAGATCCGCT 58.781 47.619 3.52 0.00 43.32 5.52
276 292 2.682952 TCGAATTCTACGAGATCCGC 57.317 50.000 3.52 0.00 43.32 5.54
296 312 0.107831 CCACCAAAGAAGACCACCGA 59.892 55.000 0.00 0.00 0.00 4.69
302 318 1.087501 GCGGATCCACCAAAGAAGAC 58.912 55.000 13.41 0.00 38.90 3.01
304 320 1.373570 GAGCGGATCCACCAAAGAAG 58.626 55.000 13.41 0.00 38.90 2.85
305 321 0.391130 CGAGCGGATCCACCAAAGAA 60.391 55.000 13.41 0.00 38.90 2.52
319 335 4.637489 CGAGGCTGGATCCGAGCG 62.637 72.222 22.08 12.06 37.32 5.03
330 346 1.948145 CTGAGGTATACGAACGAGGCT 59.052 52.381 0.14 0.00 0.00 4.58
332 348 2.681848 ACACTGAGGTATACGAACGAGG 59.318 50.000 0.14 0.00 0.00 4.63
333 349 3.126514 ACACACTGAGGTATACGAACGAG 59.873 47.826 0.14 0.00 0.00 4.18
336 352 4.698583 AGACACACTGAGGTATACGAAC 57.301 45.455 0.00 0.00 0.00 3.95
342 358 3.511477 ACCTGAAGACACACTGAGGTAT 58.489 45.455 0.00 0.00 39.24 2.73
346 362 2.487934 CCAACCTGAAGACACACTGAG 58.512 52.381 0.00 0.00 0.00 3.35
347 363 1.140852 CCCAACCTGAAGACACACTGA 59.859 52.381 0.00 0.00 0.00 3.41
351 367 1.351017 GGATCCCAACCTGAAGACACA 59.649 52.381 0.00 0.00 0.00 3.72
374 390 4.456911 GCTCACAAGAGAAACATGGATCAA 59.543 41.667 0.00 0.00 44.98 2.57
375 391 4.005650 GCTCACAAGAGAAACATGGATCA 58.994 43.478 0.00 0.00 44.98 2.92
380 396 2.414481 CTCCGCTCACAAGAGAAACATG 59.586 50.000 0.00 0.00 44.98 3.21
384 400 1.048601 ACCTCCGCTCACAAGAGAAA 58.951 50.000 0.00 0.00 44.98 2.52
392 408 1.594331 AAACAGAAACCTCCGCTCAC 58.406 50.000 0.00 0.00 0.00 3.51
393 409 2.218603 GAAAACAGAAACCTCCGCTCA 58.781 47.619 0.00 0.00 0.00 4.26
395 411 1.226746 CGAAAACAGAAACCTCCGCT 58.773 50.000 0.00 0.00 0.00 5.52
397 413 1.333791 GCACGAAAACAGAAACCTCCG 60.334 52.381 0.00 0.00 0.00 4.63
398 414 1.333791 CGCACGAAAACAGAAACCTCC 60.334 52.381 0.00 0.00 0.00 4.30
400 416 0.028902 GCGCACGAAAACAGAAACCT 59.971 50.000 0.30 0.00 0.00 3.50
401 417 0.028902 AGCGCACGAAAACAGAAACC 59.971 50.000 11.47 0.00 0.00 3.27
403 419 1.010580 TCAGCGCACGAAAACAGAAA 58.989 45.000 11.47 0.00 0.00 2.52
406 422 1.061799 GCATCAGCGCACGAAAACAG 61.062 55.000 11.47 0.00 0.00 3.16
407 423 1.082169 GCATCAGCGCACGAAAACA 60.082 52.632 11.47 0.00 0.00 2.83
408 424 3.741058 GCATCAGCGCACGAAAAC 58.259 55.556 11.47 0.00 0.00 2.43
429 447 1.494824 AACCGTCGTGCTAAGACAAC 58.505 50.000 7.36 0.00 38.46 3.32
430 448 2.228138 AAACCGTCGTGCTAAGACAA 57.772 45.000 7.36 0.00 38.46 3.18
431 449 2.228138 AAAACCGTCGTGCTAAGACA 57.772 45.000 7.36 0.00 38.46 3.41
454 472 4.481463 CAAAACTTGTTTTGACAGACGGT 58.519 39.130 25.82 0.00 42.79 4.83
455 473 3.303229 GCAAAACTTGTTTTGACAGACGG 59.697 43.478 30.99 11.66 42.79 4.79
456 474 3.303229 GGCAAAACTTGTTTTGACAGACG 59.697 43.478 30.99 12.22 46.44 4.18
457 475 4.840401 GGCAAAACTTGTTTTGACAGAC 57.160 40.909 30.99 18.12 46.44 3.51
461 479 1.930503 CCGGGCAAAACTTGTTTTGAC 59.069 47.619 30.99 29.24 46.47 3.18
463 481 0.655208 GCCGGGCAAAACTTGTTTTG 59.345 50.000 25.71 25.71 42.96 2.44
464 482 0.539518 AGCCGGGCAAAACTTGTTTT 59.460 45.000 23.09 5.74 0.00 2.43
466 484 0.104120 GAAGCCGGGCAAAACTTGTT 59.896 50.000 23.09 3.40 0.00 2.83
467 485 1.739667 GAAGCCGGGCAAAACTTGT 59.260 52.632 23.09 0.00 0.00 3.16
468 486 1.371635 CGAAGCCGGGCAAAACTTG 60.372 57.895 23.09 0.00 0.00 3.16
469 487 3.039134 CGAAGCCGGGCAAAACTT 58.961 55.556 23.09 5.90 0.00 2.66
486 504 3.564218 ATCGCCCCTCCCTCATGC 61.564 66.667 0.00 0.00 0.00 4.06
489 507 2.764128 GTCATCGCCCCTCCCTCA 60.764 66.667 0.00 0.00 0.00 3.86
524 565 1.344942 GACTACGAGCACTGCAACGG 61.345 60.000 19.38 9.21 35.74 4.44
527 568 0.386858 GACGACTACGAGCACTGCAA 60.387 55.000 3.30 0.00 42.66 4.08
557 598 9.187996 TGATAAAAATTGCATCCAGATCTGTAA 57.812 29.630 21.11 9.54 0.00 2.41
564 605 7.982919 CCTGAAATGATAAAAATTGCATCCAGA 59.017 33.333 0.00 0.00 0.00 3.86
594 635 7.687388 ACAAAAACCTAAAACACCCCTAAAAA 58.313 30.769 0.00 0.00 0.00 1.94
595 636 7.255199 ACAAAAACCTAAAACACCCCTAAAA 57.745 32.000 0.00 0.00 0.00 1.52
596 637 6.870895 ACAAAAACCTAAAACACCCCTAAA 57.129 33.333 0.00 0.00 0.00 1.85
597 638 6.212993 ACAACAAAAACCTAAAACACCCCTAA 59.787 34.615 0.00 0.00 0.00 2.69
598 639 5.720520 ACAACAAAAACCTAAAACACCCCTA 59.279 36.000 0.00 0.00 0.00 3.53
599 640 4.532916 ACAACAAAAACCTAAAACACCCCT 59.467 37.500 0.00 0.00 0.00 4.79
600 641 4.834534 ACAACAAAAACCTAAAACACCCC 58.165 39.130 0.00 0.00 0.00 4.95
601 642 6.632909 AGTACAACAAAAACCTAAAACACCC 58.367 36.000 0.00 0.00 0.00 4.61
602 643 7.701924 GGTAGTACAACAAAAACCTAAAACACC 59.298 37.037 2.06 0.00 0.00 4.16
603 644 8.242739 TGGTAGTACAACAAAAACCTAAAACAC 58.757 33.333 2.06 0.00 0.00 3.32
604 645 8.345724 TGGTAGTACAACAAAAACCTAAAACA 57.654 30.769 2.06 0.00 0.00 2.83
605 646 9.240159 CATGGTAGTACAACAAAAACCTAAAAC 57.760 33.333 2.06 0.00 0.00 2.43
606 647 9.186837 TCATGGTAGTACAACAAAAACCTAAAA 57.813 29.630 2.06 0.00 0.00 1.52
607 648 8.749026 TCATGGTAGTACAACAAAAACCTAAA 57.251 30.769 2.06 0.00 0.00 1.85
608 649 8.927675 ATCATGGTAGTACAACAAAAACCTAA 57.072 30.769 2.06 0.00 0.00 2.69
610 651 8.927675 TTATCATGGTAGTACAACAAAAACCT 57.072 30.769 2.06 0.00 0.00 3.50
611 652 9.567848 CATTATCATGGTAGTACAACAAAAACC 57.432 33.333 2.06 0.00 0.00 3.27
626 667 7.991084 ATCGATTCAACATCATTATCATGGT 57.009 32.000 0.00 0.00 0.00 3.55
634 675 6.764308 ACTTCCAATCGATTCAACATCATT 57.236 33.333 7.92 0.00 0.00 2.57
635 676 6.764308 AACTTCCAATCGATTCAACATCAT 57.236 33.333 7.92 0.00 0.00 2.45
636 677 6.573664 AAACTTCCAATCGATTCAACATCA 57.426 33.333 7.92 0.00 0.00 3.07
637 678 9.573133 AATAAAACTTCCAATCGATTCAACATC 57.427 29.630 7.92 0.00 0.00 3.06
638 679 9.927668 AAATAAAACTTCCAATCGATTCAACAT 57.072 25.926 7.92 0.00 0.00 2.71
639 680 9.405587 GAAATAAAACTTCCAATCGATTCAACA 57.594 29.630 7.92 0.00 0.00 3.33
675 716 7.088905 TCTCGGCGGTTTATTCTATTCTATTC 58.911 38.462 7.21 0.00 0.00 1.75
680 721 5.978934 TTTCTCGGCGGTTTATTCTATTC 57.021 39.130 7.21 0.00 0.00 1.75
686 727 4.758165 TCTTTCTTTTCTCGGCGGTTTATT 59.242 37.500 7.21 0.00 0.00 1.40
691 732 2.249844 TTCTTTCTTTTCTCGGCGGT 57.750 45.000 7.21 0.00 0.00 5.68
692 733 2.095718 CCTTTCTTTCTTTTCTCGGCGG 60.096 50.000 7.21 0.00 0.00 6.13
694 735 3.365465 GCTCCTTTCTTTCTTTTCTCGGC 60.365 47.826 0.00 0.00 0.00 5.54
695 736 3.815401 TGCTCCTTTCTTTCTTTTCTCGG 59.185 43.478 0.00 0.00 0.00 4.63
696 737 4.273480 TGTGCTCCTTTCTTTCTTTTCTCG 59.727 41.667 0.00 0.00 0.00 4.04
697 738 5.757850 TGTGCTCCTTTCTTTCTTTTCTC 57.242 39.130 0.00 0.00 0.00 2.87
698 739 6.530019 TTTGTGCTCCTTTCTTTCTTTTCT 57.470 33.333 0.00 0.00 0.00 2.52
699 740 6.292542 GCATTTGTGCTCCTTTCTTTCTTTTC 60.293 38.462 0.00 0.00 0.00 2.29
700 741 5.525012 GCATTTGTGCTCCTTTCTTTCTTTT 59.475 36.000 0.00 0.00 0.00 2.27
716 777 2.074230 ATATGGCGGCCGCATTTGTG 62.074 55.000 46.88 9.28 44.11 3.33
717 778 1.827789 ATATGGCGGCCGCATTTGT 60.828 52.632 46.88 29.43 44.11 2.83
718 779 1.372004 CATATGGCGGCCGCATTTG 60.372 57.895 46.88 34.04 44.11 2.32
719 780 3.041701 CATATGGCGGCCGCATTT 58.958 55.556 46.88 32.77 44.11 2.32
764 861 8.589338 ACATCTAAATGTGTTCTAGACAGAACT 58.411 33.333 16.16 1.57 45.37 3.01
765 862 8.764524 ACATCTAAATGTGTTCTAGACAGAAC 57.235 34.615 9.97 9.97 44.51 3.01
779 876 9.842775 ATTCACATCTATGTCACATCTAAATGT 57.157 29.630 0.00 0.00 42.17 2.71
785 882 8.699130 TGTCTAATTCACATCTATGTCACATCT 58.301 33.333 0.00 0.00 39.39 2.90
786 883 8.877808 TGTCTAATTCACATCTATGTCACATC 57.122 34.615 0.00 0.00 39.39 3.06
787 884 9.671279 TTTGTCTAATTCACATCTATGTCACAT 57.329 29.630 0.00 0.00 39.39 3.21
788 885 8.935844 GTTTGTCTAATTCACATCTATGTCACA 58.064 33.333 0.00 0.00 39.39 3.58
789 886 9.155975 AGTTTGTCTAATTCACATCTATGTCAC 57.844 33.333 0.00 0.00 39.39 3.67
790 887 9.154847 CAGTTTGTCTAATTCACATCTATGTCA 57.845 33.333 0.00 0.00 39.39 3.58
791 888 9.155975 ACAGTTTGTCTAATTCACATCTATGTC 57.844 33.333 0.00 0.00 39.39 3.06
792 889 9.507329 AACAGTTTGTCTAATTCACATCTATGT 57.493 29.630 0.00 0.00 42.84 2.29
795 892 9.778741 AGAAACAGTTTGTCTAATTCACATCTA 57.221 29.630 2.34 0.00 0.00 1.98
796 893 8.682936 AGAAACAGTTTGTCTAATTCACATCT 57.317 30.769 2.34 0.00 0.00 2.90
797 894 9.736023 AAAGAAACAGTTTGTCTAATTCACATC 57.264 29.630 2.34 0.00 0.00 3.06
799 896 9.921637 AAAAAGAAACAGTTTGTCTAATTCACA 57.078 25.926 2.34 0.00 0.00 3.58
827 924 1.549950 GGTTGGCTCCCCATCTCAAAA 60.550 52.381 0.00 0.00 41.78 2.44
835 932 1.434513 AACTCATGGTTGGCTCCCCA 61.435 55.000 0.00 0.00 40.06 4.96
836 933 1.384191 AACTCATGGTTGGCTCCCC 59.616 57.895 0.00 0.00 36.70 4.81
928 1053 2.757917 GCGAGGAGAGGAGGTGCT 60.758 66.667 0.00 0.00 0.00 4.40
1035 1193 1.391157 CCTGCGGAGGAAGAGAGAGG 61.391 65.000 19.84 0.00 42.93 3.69
1045 1203 4.479993 CCTGCCTTCCTGCGGAGG 62.480 72.222 18.34 18.34 40.15 4.30
1067 1225 0.240945 GGTCAATTCAGCAACACCCG 59.759 55.000 0.00 0.00 0.00 5.28
1070 1228 3.715628 ACAAGGTCAATTCAGCAACAC 57.284 42.857 0.00 0.00 0.00 3.32
1071 1229 4.734398 AAACAAGGTCAATTCAGCAACA 57.266 36.364 0.00 0.00 0.00 3.33
1202 1379 3.738481 TTTGCGGGGAGGGGATGG 61.738 66.667 0.00 0.00 0.00 3.51
1204 1381 3.739613 GGTTTGCGGGGAGGGGAT 61.740 66.667 0.00 0.00 0.00 3.85
1229 1406 1.391485 CGAGTCGCAGGAAAGTGATTG 59.609 52.381 0.00 0.00 0.00 2.67
1230 1407 1.000955 ACGAGTCGCAGGAAAGTGATT 59.999 47.619 13.59 0.00 0.00 2.57
1231 1408 0.603569 ACGAGTCGCAGGAAAGTGAT 59.396 50.000 13.59 0.00 0.00 3.06
1233 1410 1.284982 CCACGAGTCGCAGGAAAGTG 61.285 60.000 17.19 3.92 0.00 3.16
1327 1535 2.352032 CGTGACTCCCTCCTCCACC 61.352 68.421 0.00 0.00 0.00 4.61
1329 1537 2.680352 GCGTGACTCCCTCCTCCA 60.680 66.667 0.00 0.00 0.00 3.86
1349 1557 1.428219 CGGAAATCTGCAGCTGCTG 59.572 57.895 36.61 34.64 42.66 4.41
1367 1575 2.548127 GAATTGGGTCAGCGCTTGGC 62.548 60.000 7.50 4.83 44.05 4.52
1401 1609 2.125552 TGTTGGCGAGCTGATCCG 60.126 61.111 0.00 0.00 0.00 4.18
1451 1659 0.749649 GAGCAGATGAGATGACCCGT 59.250 55.000 0.00 0.00 0.00 5.28
1459 1667 4.080863 GGGTAGAAAAAGGAGCAGATGAGA 60.081 45.833 0.00 0.00 0.00 3.27
1491 1699 6.628644 AGTACTCCTAATCCTCTGCTTTTT 57.371 37.500 0.00 0.00 0.00 1.94
1492 1700 6.098552 GGTAGTACTCCTAATCCTCTGCTTTT 59.901 42.308 0.00 0.00 0.00 2.27
1527 1735 2.600790 TCCAGTAACAGAGGAACGGAA 58.399 47.619 0.00 0.00 0.00 4.30
1530 1738 3.179830 CGATTCCAGTAACAGAGGAACG 58.820 50.000 0.00 0.00 43.60 3.95
1539 1747 0.107654 AGCCAGCCGATTCCAGTAAC 60.108 55.000 0.00 0.00 0.00 2.50
1543 1751 0.962356 AAACAGCCAGCCGATTCCAG 60.962 55.000 0.00 0.00 0.00 3.86
1549 1757 1.172180 CCAAGAAAACAGCCAGCCGA 61.172 55.000 0.00 0.00 0.00 5.54
1550 1758 1.172180 TCCAAGAAAACAGCCAGCCG 61.172 55.000 0.00 0.00 0.00 5.52
1551 1759 1.067354 CATCCAAGAAAACAGCCAGCC 60.067 52.381 0.00 0.00 0.00 4.85
1552 1760 1.888512 TCATCCAAGAAAACAGCCAGC 59.111 47.619 0.00 0.00 0.00 4.85
1553 1761 3.760151 TCATCATCCAAGAAAACAGCCAG 59.240 43.478 0.00 0.00 0.00 4.85
1554 1762 3.765381 TCATCATCCAAGAAAACAGCCA 58.235 40.909 0.00 0.00 0.00 4.75
1573 1781 0.907486 AGCAGTAGCAGGCTGATTCA 59.093 50.000 20.86 0.00 45.49 2.57
1574 1782 2.102252 ACTAGCAGTAGCAGGCTGATTC 59.898 50.000 20.86 10.46 45.49 2.52
1575 1783 2.114616 ACTAGCAGTAGCAGGCTGATT 58.885 47.619 20.86 7.99 45.49 2.57
1577 1785 2.025155 GTACTAGCAGTAGCAGGCTGA 58.975 52.381 20.86 0.00 45.49 4.26
1579 1787 2.445682 AGTACTAGCAGTAGCAGGCT 57.554 50.000 0.00 0.00 45.49 4.58
1597 1806 2.583593 GCGGCGAGCTGAAGGTAG 60.584 66.667 12.98 0.00 44.04 3.18
1721 1960 2.568623 AACTAGCAACAGTCCAAGGG 57.431 50.000 0.00 0.00 0.00 3.95
1723 1962 4.097892 ACCAAAAACTAGCAACAGTCCAAG 59.902 41.667 0.00 0.00 0.00 3.61
1749 1988 1.263484 GACGAGCATGCATCCATCTTG 59.737 52.381 21.98 3.38 0.00 3.02
1750 1989 1.590932 GACGAGCATGCATCCATCTT 58.409 50.000 21.98 1.02 0.00 2.40
1751 1990 0.250209 GGACGAGCATGCATCCATCT 60.250 55.000 21.98 0.00 0.00 2.90
1752 1991 1.563435 CGGACGAGCATGCATCCATC 61.563 60.000 26.14 13.33 0.00 3.51
1753 1992 1.596203 CGGACGAGCATGCATCCAT 60.596 57.895 26.14 6.31 0.00 3.41
1754 1993 2.202919 CGGACGAGCATGCATCCA 60.203 61.111 26.14 0.00 0.00 3.41
1755 1994 2.202932 ACGGACGAGCATGCATCC 60.203 61.111 21.98 20.94 0.00 3.51
1833 2113 2.115910 CAGGCCCTGGCTCAAACA 59.884 61.111 1.63 0.00 41.60 2.83
1870 2150 6.600032 TCAGTGTATCTCTAAAGAGGACTGAC 59.400 42.308 18.14 9.51 42.30 3.51
1873 2153 5.587043 CGTCAGTGTATCTCTAAAGAGGACT 59.413 44.000 7.14 2.60 42.30 3.85
1874 2154 5.220892 CCGTCAGTGTATCTCTAAAGAGGAC 60.221 48.000 7.14 6.59 42.30 3.85
1875 2155 4.882427 CCGTCAGTGTATCTCTAAAGAGGA 59.118 45.833 7.14 0.00 42.30 3.71
1876 2156 4.641094 ACCGTCAGTGTATCTCTAAAGAGG 59.359 45.833 7.14 0.00 42.30 3.69
1885 2165 2.431057 GGGAATGACCGTCAGTGTATCT 59.569 50.000 6.15 0.00 40.11 1.98
1896 2176 1.553248 TGTAGAAGTGGGGAATGACCG 59.447 52.381 0.00 0.00 40.11 4.79
1897 2177 2.838202 TCTGTAGAAGTGGGGAATGACC 59.162 50.000 0.00 0.00 38.08 4.02
1913 2198 7.978925 AGAAAAGAGGAAGGAAAATCTCTGTA 58.021 34.615 0.00 0.00 36.78 2.74
1924 2209 6.486993 GCAGAGTAAAAAGAAAAGAGGAAGGA 59.513 38.462 0.00 0.00 0.00 3.36
1926 2211 7.443879 AGAGCAGAGTAAAAAGAAAAGAGGAAG 59.556 37.037 0.00 0.00 0.00 3.46
1929 2214 6.484977 ACAGAGCAGAGTAAAAAGAAAAGAGG 59.515 38.462 0.00 0.00 0.00 3.69
1930 2215 7.489574 ACAGAGCAGAGTAAAAAGAAAAGAG 57.510 36.000 0.00 0.00 0.00 2.85
1931 2216 7.865706 AACAGAGCAGAGTAAAAAGAAAAGA 57.134 32.000 0.00 0.00 0.00 2.52
1932 2217 8.401709 AGAAACAGAGCAGAGTAAAAAGAAAAG 58.598 33.333 0.00 0.00 0.00 2.27
1937 2222 6.610741 ACAGAAACAGAGCAGAGTAAAAAG 57.389 37.500 0.00 0.00 0.00 2.27
1962 2252 4.439974 GCCAAGACATGAAGAAACACACAA 60.440 41.667 0.00 0.00 0.00 3.33
1963 2253 3.066621 GCCAAGACATGAAGAAACACACA 59.933 43.478 0.00 0.00 0.00 3.72
1964 2254 3.316308 AGCCAAGACATGAAGAAACACAC 59.684 43.478 0.00 0.00 0.00 3.82
1966 2256 3.565482 TGAGCCAAGACATGAAGAAACAC 59.435 43.478 0.00 0.00 0.00 3.32
1967 2257 3.565482 GTGAGCCAAGACATGAAGAAACA 59.435 43.478 0.00 0.00 0.00 2.83
1968 2258 3.057946 GGTGAGCCAAGACATGAAGAAAC 60.058 47.826 0.00 0.00 34.09 2.78
1972 2262 2.189594 TGGTGAGCCAAGACATGAAG 57.810 50.000 0.00 0.00 42.83 3.02
1987 2281 6.345096 AGAAGGTAAATGGAAAACATGGTG 57.655 37.500 0.00 0.00 40.44 4.17
1989 2283 7.461182 TGTAGAAGGTAAATGGAAAACATGG 57.539 36.000 0.00 0.00 40.44 3.66
2006 2301 3.314635 GCATGGCCAGAATCTTGTAGAAG 59.685 47.826 13.05 0.00 0.00 2.85
2009 2304 1.600957 CGCATGGCCAGAATCTTGTAG 59.399 52.381 13.05 0.00 0.00 2.74
2036 2331 2.815647 GCAAGGACGAGCTTCCGG 60.816 66.667 0.00 0.00 41.04 5.14
2069 2364 6.183359 CGTTCGTAAAGATCCTCACTGTTAAC 60.183 42.308 0.00 0.00 0.00 2.01
2081 2376 8.631695 CATTAGATTAGAGCGTTCGTAAAGATC 58.368 37.037 0.00 0.00 0.00 2.75
2084 2379 7.681125 ACATTAGATTAGAGCGTTCGTAAAG 57.319 36.000 0.00 0.00 0.00 1.85
2087 2382 7.806487 CCATTACATTAGATTAGAGCGTTCGTA 59.194 37.037 0.00 0.00 0.00 3.43
2089 2384 6.400091 GCCATTACATTAGATTAGAGCGTTCG 60.400 42.308 0.00 0.00 0.00 3.95
2090 2385 6.128526 GGCCATTACATTAGATTAGAGCGTTC 60.129 42.308 0.00 0.00 0.00 3.95
2091 2386 5.701290 GGCCATTACATTAGATTAGAGCGTT 59.299 40.000 0.00 0.00 0.00 4.84
2093 2388 5.349817 CAGGCCATTACATTAGATTAGAGCG 59.650 44.000 5.01 0.00 0.00 5.03
2138 2437 6.402550 CGGTCATCACCTAGAATTTTGAACTG 60.403 42.308 0.00 0.00 41.17 3.16
2162 2461 2.123342 CCGAGAGAAGCAGATAAAGCG 58.877 52.381 0.00 0.00 37.01 4.68
2234 2533 1.334869 CACAGAAGCCTTTGGACACAC 59.665 52.381 0.00 0.00 0.00 3.82
2236 2535 1.680338 ACACAGAAGCCTTTGGACAC 58.320 50.000 0.00 0.00 0.00 3.67
2309 2611 1.884579 CTGGTTGCTTGCTGTTCAGAT 59.115 47.619 3.84 0.00 0.00 2.90
2310 2612 1.311859 CTGGTTGCTTGCTGTTCAGA 58.688 50.000 3.84 0.00 0.00 3.27
2417 2719 4.223320 TCTCCATGCTCAAACGAAAAAC 57.777 40.909 0.00 0.00 0.00 2.43
2448 2750 4.103311 AGCTATAATCAGGACAAGGGTTCC 59.897 45.833 0.00 0.00 0.00 3.62
2492 2797 7.778083 ACACGTATGAGGATTGTAATAACTGA 58.222 34.615 0.00 0.00 0.00 3.41
2563 2868 2.042569 AGGGAAAAGGGATGGTGGTAAC 59.957 50.000 0.00 0.00 0.00 2.50
2573 2878 2.418669 AGACAGTTGAGGGAAAAGGGA 58.581 47.619 0.00 0.00 0.00 4.20
2616 2921 6.835819 AGGTAACCCTTTAAGCAGAAAATC 57.164 37.500 0.00 0.00 38.13 2.17
2661 2966 5.348724 GTGATATCTGCTCGAACAAAGAACA 59.651 40.000 3.98 0.00 0.00 3.18
2662 2967 5.499334 CGTGATATCTGCTCGAACAAAGAAC 60.499 44.000 3.98 0.00 0.00 3.01
2665 2970 3.859961 ACGTGATATCTGCTCGAACAAAG 59.140 43.478 3.98 0.00 0.00 2.77
2669 2974 5.107837 CCATTTACGTGATATCTGCTCGAAC 60.108 44.000 0.00 0.00 0.00 3.95
2671 2976 4.277423 TCCATTTACGTGATATCTGCTCGA 59.723 41.667 0.00 0.00 0.00 4.04
2675 2980 5.289595 TGAGTCCATTTACGTGATATCTGC 58.710 41.667 0.00 0.00 0.00 4.26
2810 3115 9.325198 CCAATCACATAAAGCAACTACATAGTA 57.675 33.333 0.00 0.00 34.99 1.82
2819 3124 6.484818 AAAATGCCAATCACATAAAGCAAC 57.515 33.333 0.00 0.00 33.35 4.17
3015 3320 9.869757 ATTTATTTTTCGATTCCCCTTTGTTAG 57.130 29.630 0.00 0.00 0.00 2.34
3068 3373 3.718434 AGATGATCTAAATGGGCAGGTCA 59.282 43.478 0.00 0.00 36.39 4.02
3072 3377 7.344095 AGAAAAAGATGATCTAAATGGGCAG 57.656 36.000 0.00 0.00 0.00 4.85
3094 3399 7.581213 AATTTGCCAACATTCCGATATAAGA 57.419 32.000 0.00 0.00 0.00 2.10
3103 3408 4.792380 GCCACAAAAATTTGCCAACATTCC 60.792 41.667 5.82 0.00 41.79 3.01
3162 3476 7.875554 GGGAAAAGGTGTTTTGCATTTTATCTA 59.124 33.333 4.78 0.00 43.77 1.98
3189 3503 6.713903 AGAAATCATTCTTCTGACTGCTGAAA 59.286 34.615 0.00 0.00 43.43 2.69
3252 3566 6.252967 TCGCACATTAGAATTGACAATGTT 57.747 33.333 0.34 0.00 40.09 2.71
3256 3570 5.094812 GCATTCGCACATTAGAATTGACAA 58.905 37.500 0.00 0.00 35.14 3.18
3257 3571 4.155644 TGCATTCGCACATTAGAATTGACA 59.844 37.500 0.00 0.00 45.36 3.58
3259 3573 4.961435 TGCATTCGCACATTAGAATTGA 57.039 36.364 0.00 0.00 45.36 2.57
3296 3610 9.720769 AAAATCATATACTCGGTATAACTTGGG 57.279 33.333 7.54 0.00 35.10 4.12
3344 3658 6.245890 TGGAGGTGGAATTTTCATTTTTGT 57.754 33.333 0.00 0.00 0.00 2.83
3346 3660 6.840527 ACATGGAGGTGGAATTTTCATTTTT 58.159 32.000 0.00 0.00 0.00 1.94
3415 3729 7.027161 TCTCAAAACTGTGTTTCTGCTAAAAC 58.973 34.615 7.35 7.35 39.16 2.43
3470 3785 5.470098 AGAAAGAGAATGTAGCGAAAAAGCA 59.530 36.000 0.00 0.00 40.15 3.91
3479 3794 8.131731 ACTTGTCAAAAAGAAAGAGAATGTAGC 58.868 33.333 0.00 0.00 0.00 3.58
3523 3839 0.664166 CAGGTGCACAAAATCCACGC 60.664 55.000 20.43 0.00 0.00 5.34
3654 3971 9.399797 TCTTGTCTTTATCATCATGCAAACTAT 57.600 29.630 0.00 0.00 0.00 2.12
3821 4139 5.500131 GCCACAAACAAACAAAATTCTCGTC 60.500 40.000 0.00 0.00 0.00 4.20
3881 4199 5.243426 TCATATTAAAAGTCGGCAAAGCC 57.757 39.130 0.00 0.00 46.75 4.35
3883 4201 6.124088 AGCTCATATTAAAAGTCGGCAAAG 57.876 37.500 0.00 0.00 0.00 2.77
3884 4202 5.645929 TGAGCTCATATTAAAAGTCGGCAAA 59.354 36.000 13.74 0.00 0.00 3.68
4207 4527 2.678336 GGGGCGAATAGAACAGTCTTTG 59.322 50.000 0.00 0.00 35.12 2.77
4286 4606 4.732938 GCCAATTGTAGCAATCTGAGAAGC 60.733 45.833 4.43 2.49 0.00 3.86
4310 4630 0.968405 GGGTTTTCATCAGCAGCCAA 59.032 50.000 0.00 0.00 0.00 4.52
4352 4672 0.917533 AGAAGCAGCCCTCACATGAT 59.082 50.000 0.00 0.00 0.00 2.45
4365 4685 8.500753 TTTCTAAAGACTGTACAAAAGAAGCA 57.499 30.769 0.00 0.00 0.00 3.91
4414 4734 4.569943 TGAGCACAATACAAGAGAGGTTC 58.430 43.478 0.00 0.00 0.00 3.62
4419 4739 3.513119 AGCTCTGAGCACAATACAAGAGA 59.487 43.478 29.49 0.00 45.56 3.10
4564 4884 3.261580 CATCGTGTTAGATGTGAAGGCA 58.738 45.455 0.00 0.00 42.15 4.75
4636 4959 3.758023 CTGACAACAAGGACATTATGCCA 59.242 43.478 8.03 0.00 0.00 4.92
4682 5005 2.045926 CTGCCGAAGTTCCTGGGG 60.046 66.667 0.00 0.00 0.00 4.96
4711 5035 2.832733 GCTTGGTAACTACTCCAGGAGT 59.167 50.000 25.92 25.92 45.54 3.85
4944 5281 1.134699 CCCATACAGCGAGCAAGAGAA 60.135 52.381 0.00 0.00 0.00 2.87
4956 5293 0.813184 CAGTGCCAAAGCCCATACAG 59.187 55.000 0.00 0.00 38.69 2.74
4961 5298 0.112995 AGATTCAGTGCCAAAGCCCA 59.887 50.000 0.00 0.00 38.69 5.36
5042 5393 7.598278 TGAAACAAAGAAAACTAAGCAAGACA 58.402 30.769 0.00 0.00 0.00 3.41
5052 5403 9.981114 CAACCCTAATATGAAACAAAGAAAACT 57.019 29.630 0.00 0.00 0.00 2.66
5053 5404 9.974980 TCAACCCTAATATGAAACAAAGAAAAC 57.025 29.630 0.00 0.00 0.00 2.43
5076 5427 6.710295 GGCACCAGTAATGTATGATGTATCAA 59.290 38.462 0.00 0.00 40.69 2.57
5097 5448 1.659098 GTTGATACAGTACTGCGGCAC 59.341 52.381 22.90 9.55 0.00 5.01
5100 5451 2.866156 CCATGTTGATACAGTACTGCGG 59.134 50.000 22.90 0.00 37.77 5.69
5101 5452 2.285220 GCCATGTTGATACAGTACTGCG 59.715 50.000 22.90 0.12 37.77 5.18
5102 5453 3.063997 GTGCCATGTTGATACAGTACTGC 59.936 47.826 22.90 7.39 37.77 4.40
5103 5454 4.252878 TGTGCCATGTTGATACAGTACTG 58.747 43.478 21.44 21.44 37.77 2.74
5104 5455 4.222810 TCTGTGCCATGTTGATACAGTACT 59.777 41.667 0.00 0.00 39.66 2.73
5105 5456 4.503910 TCTGTGCCATGTTGATACAGTAC 58.496 43.478 0.00 0.00 39.66 2.73
5106 5457 4.817318 TCTGTGCCATGTTGATACAGTA 57.183 40.909 0.00 0.00 39.66 2.74
5107 5458 3.701205 TCTGTGCCATGTTGATACAGT 57.299 42.857 0.00 0.00 39.66 3.55
5108 5459 3.127548 GGTTCTGTGCCATGTTGATACAG 59.872 47.826 0.00 0.00 37.77 2.74
5109 5460 3.081061 GGTTCTGTGCCATGTTGATACA 58.919 45.455 0.00 0.00 38.95 2.29
5110 5461 3.127548 CAGGTTCTGTGCCATGTTGATAC 59.872 47.826 0.00 0.00 0.00 2.24
5111 5462 3.244875 ACAGGTTCTGTGCCATGTTGATA 60.245 43.478 0.00 0.00 43.63 2.15
5112 5463 2.165167 CAGGTTCTGTGCCATGTTGAT 58.835 47.619 0.00 0.00 0.00 2.57
5113 5464 1.133823 ACAGGTTCTGTGCCATGTTGA 60.134 47.619 0.00 0.00 43.63 3.18
5114 5465 1.267806 GACAGGTTCTGTGCCATGTTG 59.732 52.381 5.20 0.00 45.44 3.33
5142 5508 7.817962 ACGTATAATATGTAGCCTGATGGTTTC 59.182 37.037 0.00 0.00 35.27 2.78
5167 5534 7.148086 TGGATTGTTTTAAGGCAGATGTATGAC 60.148 37.037 0.00 0.00 0.00 3.06
5173 5540 5.002464 CCTGGATTGTTTTAAGGCAGATG 57.998 43.478 0.00 0.00 0.00 2.90
5192 5561 1.174078 TTGCAGTGGTCATGTGCCTG 61.174 55.000 3.10 2.36 36.31 4.85
5261 5886 7.728148 TGTACAACTAAATGTGGAGTGTTCTA 58.272 34.615 0.00 0.00 34.75 2.10
5287 5917 5.124936 GTGGATGGTTATTTGGTCAGGTAAC 59.875 44.000 0.00 0.00 0.00 2.50
5333 8461 8.153550 TGAGGCTTTTAAATGAGAGATATCCTC 58.846 37.037 12.00 12.00 42.28 3.71
5357 8485 6.347696 ACATGGCTCAAATTTCAAACTTTGA 58.652 32.000 0.00 0.00 38.64 2.69
5386 8515 5.779241 ACATCAGTTTGATCCCCTCTTTA 57.221 39.130 0.00 0.00 34.28 1.85
5439 8568 6.317312 TCAGTTTTTCTCCTACTAGTACCCA 58.683 40.000 0.00 0.00 0.00 4.51
5440 8569 6.847421 TCAGTTTTTCTCCTACTAGTACCC 57.153 41.667 0.00 0.00 0.00 3.69
5442 8571 9.978044 TTCTTTCAGTTTTTCTCCTACTAGTAC 57.022 33.333 0.00 0.00 0.00 2.73
5444 8573 8.925338 TCTTCTTTCAGTTTTTCTCCTACTAGT 58.075 33.333 0.00 0.00 0.00 2.57
5445 8574 9.765795 TTCTTCTTTCAGTTTTTCTCCTACTAG 57.234 33.333 0.00 0.00 0.00 2.57
5459 8588 9.765795 CTTAATATCCCGTATTCTTCTTTCAGT 57.234 33.333 0.00 0.00 34.82 3.41
5466 8595 6.107343 GCCCTCTTAATATCCCGTATTCTTC 58.893 44.000 0.00 0.00 34.82 2.87
5469 8598 4.159135 TCGCCCTCTTAATATCCCGTATTC 59.841 45.833 0.00 0.00 34.82 1.75
5490 8619 4.880886 TTTGCATGACCATAGAACATCG 57.119 40.909 0.00 0.00 0.00 3.84
5512 8641 4.024048 CCGTAATGTGTTTGAGCTTGAAGT 60.024 41.667 0.00 0.00 0.00 3.01
5513 8642 4.466828 CCGTAATGTGTTTGAGCTTGAAG 58.533 43.478 0.00 0.00 0.00 3.02
5632 8761 3.403038 ACGGAAACCAACATTCAGAGAG 58.597 45.455 0.00 0.00 0.00 3.20
5636 8765 5.371115 AACATACGGAAACCAACATTCAG 57.629 39.130 0.00 0.00 0.00 3.02
5654 8783 5.944007 GTGTGTGGTAGGGAAAGAATAACAT 59.056 40.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.