Multiple sequence alignment - TraesCS7A01G046400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G046400 chr7A 100.000 2900 0 0 1 2900 20981479 20984378 0.000000e+00 5356.0
1 TraesCS7A01G046400 chr7A 86.243 1839 244 6 1 1833 20967159 20968994 0.000000e+00 1986.0
2 TraesCS7A01G046400 chr7A 85.584 1866 262 3 7 1865 20677367 20679232 0.000000e+00 1949.0
3 TraesCS7A01G046400 chr7A 79.058 191 18 14 2184 2365 20591812 20591989 8.490000e-21 111.0
4 TraesCS7A01G046400 chr7D 86.606 1859 236 9 1 1852 20311733 20313585 0.000000e+00 2041.0
5 TraesCS7A01G046400 chr7D 85.117 1915 259 18 1 1905 20486499 20488397 0.000000e+00 1934.0
6 TraesCS7A01G046400 chr7D 85.187 1870 269 5 1 1864 20405184 20407051 0.000000e+00 1912.0
7 TraesCS7A01G046400 chr7D 84.684 1913 274 11 7 1910 89532155 89530253 0.000000e+00 1892.0
8 TraesCS7A01G046400 chr7D 84.960 1875 266 12 1 1865 20948026 20949894 0.000000e+00 1886.0
9 TraesCS7A01G046400 chr7D 93.352 722 38 4 2180 2900 20601470 20602182 0.000000e+00 1059.0
10 TraesCS7A01G046400 chr7D 87.943 141 10 3 2159 2299 20456652 20456785 2.990000e-35 159.0
11 TraesCS7A01G046400 chr7D 90.244 123 5 1 2486 2601 20456909 20457031 1.390000e-33 154.0
12 TraesCS7A01G046400 chr7D 95.455 44 2 0 2322 2365 20400598 20400641 1.440000e-08 71.3
13 TraesCS7A01G046400 chr2A 85.691 1838 251 8 1 1830 733088658 733090491 0.000000e+00 1927.0
14 TraesCS7A01G046400 chr2A 78.205 390 60 14 2535 2900 634087880 634088268 2.910000e-55 226.0
15 TraesCS7A01G046400 chr2D 85.832 1814 245 8 1 1806 598814956 598816765 0.000000e+00 1916.0
16 TraesCS7A01G046400 chr4A 86.207 87 8 3 2283 2365 713017933 713018019 1.110000e-14 91.6
17 TraesCS7A01G046400 chr4A 95.238 42 1 1 2766 2807 83327831 83327791 6.710000e-07 65.8
18 TraesCS7A01G046400 chr6A 95.238 42 2 0 2752 2793 13601410 13601451 1.860000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G046400 chr7A 20981479 20984378 2899 False 5356 5356 100.000 1 2900 1 chr7A.!!$F4 2899
1 TraesCS7A01G046400 chr7A 20967159 20968994 1835 False 1986 1986 86.243 1 1833 1 chr7A.!!$F3 1832
2 TraesCS7A01G046400 chr7A 20677367 20679232 1865 False 1949 1949 85.584 7 1865 1 chr7A.!!$F2 1858
3 TraesCS7A01G046400 chr7D 20311733 20313585 1852 False 2041 2041 86.606 1 1852 1 chr7D.!!$F1 1851
4 TraesCS7A01G046400 chr7D 20486499 20488397 1898 False 1934 1934 85.117 1 1905 1 chr7D.!!$F4 1904
5 TraesCS7A01G046400 chr7D 20405184 20407051 1867 False 1912 1912 85.187 1 1864 1 chr7D.!!$F3 1863
6 TraesCS7A01G046400 chr7D 89530253 89532155 1902 True 1892 1892 84.684 7 1910 1 chr7D.!!$R1 1903
7 TraesCS7A01G046400 chr7D 20948026 20949894 1868 False 1886 1886 84.960 1 1865 1 chr7D.!!$F6 1864
8 TraesCS7A01G046400 chr7D 20601470 20602182 712 False 1059 1059 93.352 2180 2900 1 chr7D.!!$F5 720
9 TraesCS7A01G046400 chr2A 733088658 733090491 1833 False 1927 1927 85.691 1 1830 1 chr2A.!!$F2 1829
10 TraesCS7A01G046400 chr2D 598814956 598816765 1809 False 1916 1916 85.832 1 1806 1 chr2D.!!$F1 1805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 1.33416 TGTCCTACGGAGTTGAAGCA 58.666 50.0 0.0 0.0 37.78 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2060 0.035458 CGTGGTGAAGCCTCTTCCTT 59.965 55.0 4.35 0.0 38.35 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.184628 TCTGGATGATGTTTGGACTCCT 58.815 45.455 0.00 0.00 0.00 3.69
49 50 7.646922 CCTGAAGCATTTAATGATTTGTCTAGC 59.353 37.037 9.84 0.00 39.27 3.42
77 78 9.890629 TGCTTATTCATAATGATATGGGTAGTC 57.109 33.333 0.00 0.00 39.54 2.59
101 102 4.798882 ACTGGTAATCACAACAAGGGAAA 58.201 39.130 0.00 0.00 29.94 3.13
146 147 6.341316 TCTCAAGGACATATCTTAACACTGC 58.659 40.000 0.00 0.00 0.00 4.40
157 158 3.072476 TCTTAACACTGCCAGCTTTACCT 59.928 43.478 0.00 0.00 0.00 3.08
181 182 2.172293 AGACAAGGCATGGGATCTCTTC 59.828 50.000 0.00 0.00 0.00 2.87
210 211 5.942826 AGAAAGCCTTTCCAAGAGATACAAG 59.057 40.000 13.45 0.00 40.54 3.16
237 238 1.334160 TGTCCTACGGAGTTGAAGCA 58.666 50.000 0.00 0.00 37.78 3.91
244 245 1.531149 ACGGAGTTGAAGCATTTGTCG 59.469 47.619 0.00 0.00 37.78 4.35
438 439 4.442706 AGCTTCATATACCTTCCAACACG 58.557 43.478 0.00 0.00 0.00 4.49
518 519 5.239963 AGGAAACAACTTGTACGGTTATTGG 59.760 40.000 0.00 0.00 0.00 3.16
565 566 3.944087 GGGTGAAAGCACACTAGAAGAT 58.056 45.455 0.00 0.00 45.12 2.40
621 622 6.725246 ACAGAAACATGCTACAACTTGTTAC 58.275 36.000 0.00 0.00 37.04 2.50
629 630 4.577283 TGCTACAACTTGTTACAAGGAACC 59.423 41.667 26.09 11.42 0.00 3.62
631 632 4.976224 ACAACTTGTTACAAGGAACCAC 57.024 40.909 26.09 0.00 0.00 4.16
634 635 5.124936 ACAACTTGTTACAAGGAACCACTTC 59.875 40.000 26.09 0.00 0.00 3.01
695 696 3.069872 TGAATTGGCAGTTGATTTGTGCT 59.930 39.130 0.00 0.00 37.37 4.40
716 717 5.163663 TGCTAGAAGAACTGTTTTGGTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
737 738 7.645340 GTGTTGCATATGAGAATAAATGTGGAC 59.355 37.037 6.97 0.00 0.00 4.02
766 771 3.284617 TCAGAAGGATGGACGTCGATTA 58.715 45.455 14.57 0.00 0.00 1.75
798 803 8.981647 GCACAAACAAAAAGATGATATTCAACT 58.018 29.630 0.00 0.00 30.32 3.16
841 846 4.441415 CACCTTCGAACTATCATTACGCTC 59.559 45.833 0.00 0.00 0.00 5.03
868 873 6.018913 GTGATAGCAAGTCATCATTCACTCTG 60.019 42.308 0.00 0.00 33.92 3.35
1014 1023 1.066858 GTGAAGATGCTCCCGAAGACA 60.067 52.381 0.00 0.00 0.00 3.41
1023 1032 3.274288 GCTCCCGAAGACAATTGAGAAT 58.726 45.455 13.59 0.00 0.00 2.40
1033 1042 9.059485 CGAAGACAATTGAGAATCTTTCAAATC 57.941 33.333 13.59 0.00 38.01 2.17
1111 1120 2.481289 ACTGAAGAAGCTTAGGCACC 57.519 50.000 0.00 0.00 41.70 5.01
1135 1144 8.370182 ACCTATTTGCTCAGAAAACAATTGATT 58.630 29.630 13.59 3.30 0.00 2.57
1140 1149 6.441274 TGCTCAGAAAACAATTGATTCAGAC 58.559 36.000 21.90 16.03 0.00 3.51
1336 1348 9.820725 GTAGAAGTATCAGTGAGTCTCTAGTTA 57.179 37.037 0.00 0.00 0.00 2.24
1362 1374 6.611642 AGATGCAGTATTTGTCCTACCTAGAA 59.388 38.462 0.00 0.00 0.00 2.10
1375 1387 5.955959 TCCTACCTAGAAGTGAATGCAAGTA 59.044 40.000 0.00 0.00 0.00 2.24
1407 1419 5.053978 AGGTTCTCTTGTTGAATGTCCTT 57.946 39.130 0.00 0.00 0.00 3.36
1476 1488 1.735386 CGTTGGACGAGTCTCCTCTA 58.265 55.000 3.09 0.00 46.05 2.43
1494 1506 4.219115 CTCTATTCCAAGCTGTAGAGGGA 58.781 47.826 0.00 0.00 37.55 4.20
1663 1675 4.142182 CCAAGCTGAAGGTTCTCTCTCTAG 60.142 50.000 0.00 0.00 32.86 2.43
1673 1685 4.270008 GTTCTCTCTCTAGGAGACTTGCT 58.730 47.826 6.79 0.00 45.20 3.91
1676 1688 5.680619 TCTCTCTCTAGGAGACTTGCTTAG 58.319 45.833 6.79 0.00 45.20 2.18
1744 1756 6.238703 GGAGGAACTATACTTAGTCAACCTCG 60.239 46.154 17.43 0.00 43.95 4.63
1761 1773 2.821366 GGCAGCATGACGGAGGTG 60.821 66.667 0.00 0.00 39.69 4.00
1784 1796 0.807496 GCTGGCATTGAGTTCCTCAC 59.193 55.000 0.00 0.00 40.46 3.51
1785 1797 1.883638 GCTGGCATTGAGTTCCTCACA 60.884 52.381 0.00 0.00 40.46 3.58
1789 1801 2.618816 GGCATTGAGTTCCTCACATCCA 60.619 50.000 0.00 0.00 40.46 3.41
1812 1824 5.250235 TCAAGTATCTAGGCTTTCACGAG 57.750 43.478 0.00 0.00 0.00 4.18
1821 1833 1.404717 GGCTTTCACGAGATCAGCAGA 60.405 52.381 13.91 0.00 33.92 4.26
1835 1847 4.185467 TCAGCAGAGACTTCTTGACATC 57.815 45.455 0.00 0.00 0.00 3.06
1836 1848 3.056250 TCAGCAGAGACTTCTTGACATCC 60.056 47.826 0.00 0.00 0.00 3.51
1852 1864 1.264749 ATCCCTGCGCCAGTGTTCTA 61.265 55.000 4.18 0.00 0.00 2.10
1857 1869 1.394917 CTGCGCCAGTGTTCTACAATC 59.605 52.381 4.18 0.00 0.00 2.67
1865 1877 4.324563 CCAGTGTTCTACAATCCAAGGGAT 60.325 45.833 0.00 0.00 45.46 3.85
1866 1878 5.104527 CCAGTGTTCTACAATCCAAGGGATA 60.105 44.000 0.00 0.00 42.27 2.59
1867 1879 5.817816 CAGTGTTCTACAATCCAAGGGATAC 59.182 44.000 0.00 0.00 42.27 2.24
1868 1880 5.726793 AGTGTTCTACAATCCAAGGGATACT 59.273 40.000 0.00 0.00 42.27 2.12
1869 1881 5.817816 GTGTTCTACAATCCAAGGGATACTG 59.182 44.000 0.00 0.00 42.27 2.74
1870 1882 5.487488 TGTTCTACAATCCAAGGGATACTGT 59.513 40.000 7.51 7.51 42.27 3.55
1871 1883 5.871396 TCTACAATCCAAGGGATACTGTC 57.129 43.478 5.99 0.00 42.27 3.51
1872 1884 5.277250 TCTACAATCCAAGGGATACTGTCA 58.723 41.667 5.99 0.00 42.27 3.58
1876 1888 0.178068 CCAAGGGATACTGTCACGGG 59.822 60.000 0.00 0.00 34.56 5.28
1877 1889 0.462047 CAAGGGATACTGTCACGGGC 60.462 60.000 0.00 0.00 34.56 6.13
1879 1891 2.420568 GGGATACTGTCACGGGCGA 61.421 63.158 0.00 0.00 0.00 5.54
1880 1892 1.514087 GGATACTGTCACGGGCGAA 59.486 57.895 0.00 0.00 0.00 4.70
1887 1899 0.108520 TGTCACGGGCGAAGTATTCC 60.109 55.000 0.00 0.00 43.81 3.01
1905 1917 1.333636 CCCTCCGAGATTGACCTGCT 61.334 60.000 0.00 0.00 0.00 4.24
1910 1922 2.028130 CCGAGATTGACCTGCTACTCT 58.972 52.381 0.00 0.00 0.00 3.24
1911 1923 3.118000 TCCGAGATTGACCTGCTACTCTA 60.118 47.826 0.00 0.00 0.00 2.43
1912 1924 3.003897 CCGAGATTGACCTGCTACTCTAC 59.996 52.174 0.00 0.00 0.00 2.59
1913 1925 3.880490 CGAGATTGACCTGCTACTCTACT 59.120 47.826 0.00 0.00 0.00 2.57
1914 1926 4.024387 CGAGATTGACCTGCTACTCTACTC 60.024 50.000 0.00 0.00 0.00 2.59
1915 1927 4.211920 AGATTGACCTGCTACTCTACTCC 58.788 47.826 0.00 0.00 0.00 3.85
1916 1928 2.438800 TGACCTGCTACTCTACTCCC 57.561 55.000 0.00 0.00 0.00 4.30
1917 1929 1.639108 TGACCTGCTACTCTACTCCCA 59.361 52.381 0.00 0.00 0.00 4.37
1918 1930 2.042569 TGACCTGCTACTCTACTCCCAA 59.957 50.000 0.00 0.00 0.00 4.12
1919 1931 3.301274 GACCTGCTACTCTACTCCCAAT 58.699 50.000 0.00 0.00 0.00 3.16
1920 1932 3.301274 ACCTGCTACTCTACTCCCAATC 58.699 50.000 0.00 0.00 0.00 2.67
1921 1933 3.300388 CCTGCTACTCTACTCCCAATCA 58.700 50.000 0.00 0.00 0.00 2.57
1922 1934 3.068873 CCTGCTACTCTACTCCCAATCAC 59.931 52.174 0.00 0.00 0.00 3.06
1923 1935 3.031736 TGCTACTCTACTCCCAATCACC 58.968 50.000 0.00 0.00 0.00 4.02
1924 1936 3.301274 GCTACTCTACTCCCAATCACCT 58.699 50.000 0.00 0.00 0.00 4.00
1925 1937 3.068873 GCTACTCTACTCCCAATCACCTG 59.931 52.174 0.00 0.00 0.00 4.00
1926 1938 1.834263 ACTCTACTCCCAATCACCTGC 59.166 52.381 0.00 0.00 0.00 4.85
1927 1939 1.139853 CTCTACTCCCAATCACCTGCC 59.860 57.143 0.00 0.00 0.00 4.85
1928 1940 0.911769 CTACTCCCAATCACCTGCCA 59.088 55.000 0.00 0.00 0.00 4.92
1929 1941 1.281867 CTACTCCCAATCACCTGCCAA 59.718 52.381 0.00 0.00 0.00 4.52
1930 1942 0.251341 ACTCCCAATCACCTGCCAAC 60.251 55.000 0.00 0.00 0.00 3.77
1931 1943 0.038744 CTCCCAATCACCTGCCAACT 59.961 55.000 0.00 0.00 0.00 3.16
1932 1944 1.281867 CTCCCAATCACCTGCCAACTA 59.718 52.381 0.00 0.00 0.00 2.24
1933 1945 1.281867 TCCCAATCACCTGCCAACTAG 59.718 52.381 0.00 0.00 0.00 2.57
1934 1946 1.683011 CCCAATCACCTGCCAACTAGG 60.683 57.143 0.00 0.00 41.22 3.02
1940 1952 0.981943 ACCTGCCAACTAGGTGTACC 59.018 55.000 7.09 0.00 46.48 3.34
1941 1953 0.981183 CCTGCCAACTAGGTGTACCA 59.019 55.000 7.09 0.08 40.61 3.25
1942 1954 1.559682 CCTGCCAACTAGGTGTACCAT 59.440 52.381 7.09 0.00 40.61 3.55
1943 1955 2.632377 CTGCCAACTAGGTGTACCATG 58.368 52.381 7.09 0.00 40.61 3.66
1944 1956 1.339631 TGCCAACTAGGTGTACCATGC 60.340 52.381 7.09 2.15 40.61 4.06
1945 1957 1.339631 GCCAACTAGGTGTACCATGCA 60.340 52.381 7.09 0.00 40.61 3.96
1946 1958 2.683742 GCCAACTAGGTGTACCATGCAT 60.684 50.000 7.09 0.00 40.61 3.96
1947 1959 2.945008 CCAACTAGGTGTACCATGCATG 59.055 50.000 20.19 20.19 38.89 4.06
1948 1960 2.332063 ACTAGGTGTACCATGCATGC 57.668 50.000 21.69 11.82 38.89 4.06
1949 1961 1.559219 ACTAGGTGTACCATGCATGCA 59.441 47.619 25.04 25.04 38.89 3.96
1950 1962 2.173356 ACTAGGTGTACCATGCATGCAT 59.827 45.455 27.46 27.46 38.89 3.96
1951 1963 2.148446 AGGTGTACCATGCATGCATT 57.852 45.000 30.32 19.40 38.89 3.56
1952 1964 3.295585 AGGTGTACCATGCATGCATTA 57.704 42.857 30.32 18.31 38.89 1.90
1953 1965 2.951642 AGGTGTACCATGCATGCATTAC 59.048 45.455 30.32 27.52 38.89 1.89
1954 1966 2.951642 GGTGTACCATGCATGCATTACT 59.048 45.455 30.32 17.00 33.90 2.24
1955 1967 3.381272 GGTGTACCATGCATGCATTACTT 59.619 43.478 30.32 16.26 33.90 2.24
1956 1968 4.353737 GTGTACCATGCATGCATTACTTG 58.646 43.478 30.32 19.77 33.90 3.16
1968 1980 3.085952 CATTACTTGCTTCCTTCCCCA 57.914 47.619 0.00 0.00 0.00 4.96
1969 1981 3.635591 CATTACTTGCTTCCTTCCCCAT 58.364 45.455 0.00 0.00 0.00 4.00
1970 1982 3.366052 TTACTTGCTTCCTTCCCCATC 57.634 47.619 0.00 0.00 0.00 3.51
1971 1983 1.376649 ACTTGCTTCCTTCCCCATCT 58.623 50.000 0.00 0.00 0.00 2.90
1972 1984 1.283321 ACTTGCTTCCTTCCCCATCTC 59.717 52.381 0.00 0.00 0.00 2.75
1973 1985 1.563410 CTTGCTTCCTTCCCCATCTCT 59.437 52.381 0.00 0.00 0.00 3.10
1974 1986 2.568546 TGCTTCCTTCCCCATCTCTA 57.431 50.000 0.00 0.00 0.00 2.43
1975 1987 2.845659 TGCTTCCTTCCCCATCTCTAA 58.154 47.619 0.00 0.00 0.00 2.10
1976 1988 3.397527 TGCTTCCTTCCCCATCTCTAAT 58.602 45.455 0.00 0.00 0.00 1.73
1977 1989 3.392616 TGCTTCCTTCCCCATCTCTAATC 59.607 47.826 0.00 0.00 0.00 1.75
1978 1990 3.556004 GCTTCCTTCCCCATCTCTAATCG 60.556 52.174 0.00 0.00 0.00 3.34
1979 1991 3.330126 TCCTTCCCCATCTCTAATCGT 57.670 47.619 0.00 0.00 0.00 3.73
1980 1992 4.464652 TCCTTCCCCATCTCTAATCGTA 57.535 45.455 0.00 0.00 0.00 3.43
1981 1993 4.150359 TCCTTCCCCATCTCTAATCGTAC 58.850 47.826 0.00 0.00 0.00 3.67
1982 1994 4.140994 TCCTTCCCCATCTCTAATCGTACT 60.141 45.833 0.00 0.00 0.00 2.73
1983 1995 5.074102 TCCTTCCCCATCTCTAATCGTACTA 59.926 44.000 0.00 0.00 0.00 1.82
1984 1996 5.183522 CCTTCCCCATCTCTAATCGTACTAC 59.816 48.000 0.00 0.00 0.00 2.73
1985 1997 4.660168 TCCCCATCTCTAATCGTACTACC 58.340 47.826 0.00 0.00 0.00 3.18
1986 1998 4.353191 TCCCCATCTCTAATCGTACTACCT 59.647 45.833 0.00 0.00 0.00 3.08
1987 1999 5.078256 CCCCATCTCTAATCGTACTACCTT 58.922 45.833 0.00 0.00 0.00 3.50
1988 2000 5.047943 CCCCATCTCTAATCGTACTACCTTG 60.048 48.000 0.00 0.00 0.00 3.61
1989 2001 5.768662 CCCATCTCTAATCGTACTACCTTGA 59.231 44.000 0.00 0.00 0.00 3.02
1990 2002 6.294065 CCCATCTCTAATCGTACTACCTTGAC 60.294 46.154 0.00 0.00 0.00 3.18
1991 2003 6.262496 CCATCTCTAATCGTACTACCTTGACA 59.738 42.308 0.00 0.00 0.00 3.58
1992 2004 7.040340 CCATCTCTAATCGTACTACCTTGACAT 60.040 40.741 0.00 0.00 0.00 3.06
1993 2005 7.260558 TCTCTAATCGTACTACCTTGACATG 57.739 40.000 0.00 0.00 0.00 3.21
1994 2006 6.827251 TCTCTAATCGTACTACCTTGACATGT 59.173 38.462 0.00 0.00 0.00 3.21
1995 2007 7.338703 TCTCTAATCGTACTACCTTGACATGTT 59.661 37.037 0.00 0.00 0.00 2.71
1996 2008 7.255569 TCTAATCGTACTACCTTGACATGTTG 58.744 38.462 0.00 0.00 0.00 3.33
1997 2009 5.654603 ATCGTACTACCTTGACATGTTGA 57.345 39.130 0.00 0.00 0.00 3.18
1998 2010 5.456548 TCGTACTACCTTGACATGTTGAA 57.543 39.130 0.00 0.00 0.00 2.69
1999 2011 5.845103 TCGTACTACCTTGACATGTTGAAA 58.155 37.500 0.00 0.00 0.00 2.69
2000 2012 6.460781 TCGTACTACCTTGACATGTTGAAAT 58.539 36.000 0.00 0.00 0.00 2.17
2001 2013 6.367695 TCGTACTACCTTGACATGTTGAAATG 59.632 38.462 0.00 0.00 0.00 2.32
2002 2014 6.367695 CGTACTACCTTGACATGTTGAAATGA 59.632 38.462 0.00 0.00 0.00 2.57
2003 2015 7.064609 CGTACTACCTTGACATGTTGAAATGAT 59.935 37.037 0.00 0.00 0.00 2.45
2004 2016 7.765695 ACTACCTTGACATGTTGAAATGATT 57.234 32.000 0.00 0.00 0.00 2.57
2005 2017 8.181904 ACTACCTTGACATGTTGAAATGATTT 57.818 30.769 0.00 0.00 0.00 2.17
2006 2018 8.084073 ACTACCTTGACATGTTGAAATGATTTG 58.916 33.333 0.00 0.00 0.00 2.32
2007 2019 6.225318 ACCTTGACATGTTGAAATGATTTGG 58.775 36.000 0.00 0.00 0.00 3.28
2008 2020 6.183360 ACCTTGACATGTTGAAATGATTTGGT 60.183 34.615 0.00 0.00 0.00 3.67
2009 2021 6.146510 CCTTGACATGTTGAAATGATTTGGTG 59.853 38.462 0.00 0.00 0.00 4.17
2010 2022 6.159299 TGACATGTTGAAATGATTTGGTGT 57.841 33.333 0.00 0.00 0.00 4.16
2011 2023 6.580788 TGACATGTTGAAATGATTTGGTGTT 58.419 32.000 0.00 0.00 0.00 3.32
2012 2024 6.479331 TGACATGTTGAAATGATTTGGTGTTG 59.521 34.615 0.00 0.00 0.00 3.33
2013 2025 5.759273 ACATGTTGAAATGATTTGGTGTTGG 59.241 36.000 0.00 0.00 0.00 3.77
2014 2026 5.350504 TGTTGAAATGATTTGGTGTTGGT 57.649 34.783 0.00 0.00 0.00 3.67
2015 2027 5.738909 TGTTGAAATGATTTGGTGTTGGTT 58.261 33.333 0.00 0.00 0.00 3.67
2016 2028 6.878317 TGTTGAAATGATTTGGTGTTGGTTA 58.122 32.000 0.00 0.00 0.00 2.85
2017 2029 7.504403 TGTTGAAATGATTTGGTGTTGGTTAT 58.496 30.769 0.00 0.00 0.00 1.89
2018 2030 8.642432 TGTTGAAATGATTTGGTGTTGGTTATA 58.358 29.630 0.00 0.00 0.00 0.98
2019 2031 9.651913 GTTGAAATGATTTGGTGTTGGTTATAT 57.348 29.630 0.00 0.00 0.00 0.86
2020 2032 9.650539 TTGAAATGATTTGGTGTTGGTTATATG 57.349 29.630 0.00 0.00 0.00 1.78
2021 2033 7.763528 TGAAATGATTTGGTGTTGGTTATATGC 59.236 33.333 0.00 0.00 0.00 3.14
2022 2034 6.788598 ATGATTTGGTGTTGGTTATATGCA 57.211 33.333 0.00 0.00 0.00 3.96
2023 2035 6.206395 TGATTTGGTGTTGGTTATATGCAG 57.794 37.500 0.00 0.00 0.00 4.41
2024 2036 5.126869 TGATTTGGTGTTGGTTATATGCAGG 59.873 40.000 0.00 0.00 0.00 4.85
2025 2037 3.730215 TGGTGTTGGTTATATGCAGGT 57.270 42.857 0.00 0.00 0.00 4.00
2026 2038 3.616219 TGGTGTTGGTTATATGCAGGTC 58.384 45.455 0.00 0.00 0.00 3.85
2027 2039 3.009584 TGGTGTTGGTTATATGCAGGTCA 59.990 43.478 0.00 0.00 0.00 4.02
2028 2040 3.377172 GGTGTTGGTTATATGCAGGTCAC 59.623 47.826 0.00 0.00 0.00 3.67
2029 2041 4.006989 GTGTTGGTTATATGCAGGTCACA 58.993 43.478 0.00 0.00 0.00 3.58
2030 2042 4.640201 GTGTTGGTTATATGCAGGTCACAT 59.360 41.667 0.00 0.00 0.00 3.21
2031 2043 4.639755 TGTTGGTTATATGCAGGTCACATG 59.360 41.667 0.00 0.00 0.00 3.21
2032 2044 3.213506 TGGTTATATGCAGGTCACATGC 58.786 45.455 7.69 7.69 44.11 4.06
2033 2045 2.554032 GGTTATATGCAGGTCACATGCC 59.446 50.000 12.77 0.00 43.18 4.40
2034 2046 2.168326 TATATGCAGGTCACATGCCG 57.832 50.000 12.77 0.00 43.18 5.69
2035 2047 0.535780 ATATGCAGGTCACATGCCGG 60.536 55.000 12.77 0.00 43.18 6.13
2036 2048 1.621672 TATGCAGGTCACATGCCGGA 61.622 55.000 12.77 0.00 43.18 5.14
2037 2049 2.359850 GCAGGTCACATGCCGGAA 60.360 61.111 5.05 0.00 37.73 4.30
2038 2050 2.401766 GCAGGTCACATGCCGGAAG 61.402 63.158 5.05 0.00 37.73 3.46
2052 2064 1.861982 CGGAAGGTAGGAAGGAAGGA 58.138 55.000 0.00 0.00 0.00 3.36
2053 2065 2.185387 CGGAAGGTAGGAAGGAAGGAA 58.815 52.381 0.00 0.00 0.00 3.36
2054 2066 2.168728 CGGAAGGTAGGAAGGAAGGAAG 59.831 54.545 0.00 0.00 0.00 3.46
2055 2067 3.451890 GGAAGGTAGGAAGGAAGGAAGA 58.548 50.000 0.00 0.00 0.00 2.87
2056 2068 3.452990 GGAAGGTAGGAAGGAAGGAAGAG 59.547 52.174 0.00 0.00 0.00 2.85
2057 2069 3.123392 AGGTAGGAAGGAAGGAAGAGG 57.877 52.381 0.00 0.00 0.00 3.69
2058 2070 1.487142 GGTAGGAAGGAAGGAAGAGGC 59.513 57.143 0.00 0.00 0.00 4.70
2059 2071 2.473070 GTAGGAAGGAAGGAAGAGGCT 58.527 52.381 0.00 0.00 0.00 4.58
2060 2072 2.052249 AGGAAGGAAGGAAGAGGCTT 57.948 50.000 0.00 0.00 0.00 4.35
2061 2073 1.912731 AGGAAGGAAGGAAGAGGCTTC 59.087 52.381 0.00 0.00 0.00 3.86
2062 2074 1.630878 GGAAGGAAGGAAGAGGCTTCA 59.369 52.381 9.16 0.00 0.00 3.02
2063 2075 2.616765 GGAAGGAAGGAAGAGGCTTCAC 60.617 54.545 9.16 0.00 0.00 3.18
2064 2076 0.988063 AGGAAGGAAGAGGCTTCACC 59.012 55.000 9.16 1.16 39.61 4.02
2065 2077 0.693049 GGAAGGAAGAGGCTTCACCA 59.307 55.000 12.83 0.00 43.14 4.17
2066 2078 1.611936 GGAAGGAAGAGGCTTCACCAC 60.612 57.143 12.83 7.43 43.14 4.16
2067 2079 0.035458 AAGGAAGAGGCTTCACCACG 59.965 55.000 12.83 0.00 43.14 4.94
2068 2080 0.832135 AGGAAGAGGCTTCACCACGA 60.832 55.000 12.83 0.00 43.14 4.35
2069 2081 0.390472 GGAAGAGGCTTCACCACGAG 60.390 60.000 9.16 0.00 43.14 4.18
2070 2082 0.318762 GAAGAGGCTTCACCACGAGT 59.681 55.000 0.00 0.00 43.14 4.18
2071 2083 0.759346 AAGAGGCTTCACCACGAGTT 59.241 50.000 0.00 0.00 43.14 3.01
2072 2084 1.629043 AGAGGCTTCACCACGAGTTA 58.371 50.000 0.00 0.00 43.14 2.24
2073 2085 1.968493 AGAGGCTTCACCACGAGTTAA 59.032 47.619 0.00 0.00 43.14 2.01
2074 2086 2.028930 AGAGGCTTCACCACGAGTTAAG 60.029 50.000 0.00 0.00 43.14 1.85
2075 2087 1.002087 AGGCTTCACCACGAGTTAAGG 59.998 52.381 0.00 0.00 43.14 2.69
2076 2088 0.796927 GCTTCACCACGAGTTAAGGC 59.203 55.000 0.00 0.00 31.46 4.35
2077 2089 1.068474 CTTCACCACGAGTTAAGGCG 58.932 55.000 0.00 0.00 0.00 5.52
2078 2090 0.947180 TTCACCACGAGTTAAGGCGC 60.947 55.000 0.00 0.00 0.00 6.53
2079 2091 1.374252 CACCACGAGTTAAGGCGCT 60.374 57.895 7.64 0.00 0.00 5.92
2080 2092 1.374252 ACCACGAGTTAAGGCGCTG 60.374 57.895 7.64 0.00 0.00 5.18
2081 2093 1.080093 CCACGAGTTAAGGCGCTGA 60.080 57.895 7.64 0.00 0.00 4.26
2082 2094 0.460284 CCACGAGTTAAGGCGCTGAT 60.460 55.000 7.64 0.00 0.00 2.90
2083 2095 0.647410 CACGAGTTAAGGCGCTGATG 59.353 55.000 7.64 0.00 0.00 3.07
2084 2096 1.084370 ACGAGTTAAGGCGCTGATGC 61.084 55.000 7.64 0.00 0.00 3.91
2085 2097 1.083806 CGAGTTAAGGCGCTGATGCA 61.084 55.000 7.64 0.00 39.64 3.96
2086 2098 1.303309 GAGTTAAGGCGCTGATGCAT 58.697 50.000 7.64 0.00 39.64 3.96
2087 2099 1.262683 GAGTTAAGGCGCTGATGCATC 59.737 52.381 20.14 20.14 39.64 3.91
2088 2100 1.016627 GTTAAGGCGCTGATGCATCA 58.983 50.000 27.10 27.10 39.64 3.07
2089 2101 1.016627 TTAAGGCGCTGATGCATCAC 58.983 50.000 25.42 19.37 39.64 3.06
2090 2102 0.107752 TAAGGCGCTGATGCATCACA 60.108 50.000 25.42 6.60 39.64 3.58
2091 2103 1.651240 AAGGCGCTGATGCATCACAC 61.651 55.000 25.42 18.28 39.64 3.82
2092 2104 2.110967 GGCGCTGATGCATCACACT 61.111 57.895 25.42 0.00 39.64 3.55
2093 2105 1.351012 GCGCTGATGCATCACACTC 59.649 57.895 25.42 11.68 39.64 3.51
2094 2106 1.363885 GCGCTGATGCATCACACTCA 61.364 55.000 25.42 5.21 39.64 3.41
2095 2107 1.081094 CGCTGATGCATCACACTCAA 58.919 50.000 25.42 2.77 39.64 3.02
2096 2108 1.669265 CGCTGATGCATCACACTCAAT 59.331 47.619 25.42 0.00 39.64 2.57
2097 2109 2.538939 CGCTGATGCATCACACTCAATG 60.539 50.000 25.42 13.83 39.64 2.82
2098 2110 2.422479 GCTGATGCATCACACTCAATGT 59.578 45.455 25.42 0.00 39.93 2.71
2127 2139 2.630158 CAGTGCTGCTGCTAATCTTCT 58.370 47.619 17.00 1.75 38.52 2.85
2128 2140 3.790091 CAGTGCTGCTGCTAATCTTCTA 58.210 45.455 17.00 0.00 38.52 2.10
2129 2141 4.378774 CAGTGCTGCTGCTAATCTTCTAT 58.621 43.478 17.00 0.00 38.52 1.98
2130 2142 5.536260 CAGTGCTGCTGCTAATCTTCTATA 58.464 41.667 17.00 0.00 38.52 1.31
2131 2143 6.164876 CAGTGCTGCTGCTAATCTTCTATAT 58.835 40.000 17.00 0.00 38.52 0.86
2132 2144 7.318893 CAGTGCTGCTGCTAATCTTCTATATA 58.681 38.462 17.00 0.00 38.52 0.86
2133 2145 7.488792 CAGTGCTGCTGCTAATCTTCTATATAG 59.511 40.741 17.00 3.10 38.52 1.31
2134 2146 7.178274 AGTGCTGCTGCTAATCTTCTATATAGT 59.822 37.037 17.00 0.00 40.48 2.12
2135 2147 7.275341 GTGCTGCTGCTAATCTTCTATATAGTG 59.725 40.741 17.00 4.74 40.48 2.74
2136 2148 6.255453 GCTGCTGCTAATCTTCTATATAGTGC 59.745 42.308 8.53 5.22 36.03 4.40
2137 2149 7.473735 TGCTGCTAATCTTCTATATAGTGCT 57.526 36.000 9.58 0.00 0.00 4.40
2138 2150 7.901029 TGCTGCTAATCTTCTATATAGTGCTT 58.099 34.615 9.58 5.16 0.00 3.91
2139 2151 8.031864 TGCTGCTAATCTTCTATATAGTGCTTC 58.968 37.037 9.58 0.00 0.00 3.86
2140 2152 8.031864 GCTGCTAATCTTCTATATAGTGCTTCA 58.968 37.037 9.58 0.00 0.00 3.02
2141 2153 9.920133 CTGCTAATCTTCTATATAGTGCTTCAA 57.080 33.333 9.58 0.00 0.00 2.69
2155 2167 8.879342 ATAGTGCTTCAAATGTACTATCTCAC 57.121 34.615 0.00 0.00 38.37 3.51
2156 2168 5.807520 AGTGCTTCAAATGTACTATCTCACG 59.192 40.000 0.00 0.00 0.00 4.35
2157 2169 5.577164 GTGCTTCAAATGTACTATCTCACGT 59.423 40.000 0.00 0.00 0.00 4.49
2158 2170 5.805486 TGCTTCAAATGTACTATCTCACGTC 59.195 40.000 0.00 0.00 0.00 4.34
2159 2171 6.037098 GCTTCAAATGTACTATCTCACGTCT 58.963 40.000 0.00 0.00 0.00 4.18
2160 2172 6.197468 GCTTCAAATGTACTATCTCACGTCTC 59.803 42.308 0.00 0.00 0.00 3.36
2161 2173 6.132791 TCAAATGTACTATCTCACGTCTCC 57.867 41.667 0.00 0.00 0.00 3.71
2162 2174 5.650703 TCAAATGTACTATCTCACGTCTCCA 59.349 40.000 0.00 0.00 0.00 3.86
2163 2175 5.502153 AATGTACTATCTCACGTCTCCAC 57.498 43.478 0.00 0.00 0.00 4.02
2164 2176 3.276857 TGTACTATCTCACGTCTCCACC 58.723 50.000 0.00 0.00 0.00 4.61
2165 2177 2.509166 ACTATCTCACGTCTCCACCA 57.491 50.000 0.00 0.00 0.00 4.17
2166 2178 2.093106 ACTATCTCACGTCTCCACCAC 58.907 52.381 0.00 0.00 0.00 4.16
2167 2179 2.092323 CTATCTCACGTCTCCACCACA 58.908 52.381 0.00 0.00 0.00 4.17
2168 2180 0.891373 ATCTCACGTCTCCACCACAG 59.109 55.000 0.00 0.00 0.00 3.66
2169 2181 0.467474 TCTCACGTCTCCACCACAGT 60.467 55.000 0.00 0.00 0.00 3.55
2170 2182 0.319040 CTCACGTCTCCACCACAGTG 60.319 60.000 0.00 0.00 44.12 3.66
2171 2183 1.956170 CACGTCTCCACCACAGTGC 60.956 63.158 0.00 0.00 43.09 4.40
2172 2184 2.134287 ACGTCTCCACCACAGTGCT 61.134 57.895 0.00 0.00 43.09 4.40
2173 2185 1.069765 CGTCTCCACCACAGTGCTT 59.930 57.895 0.00 0.00 43.09 3.91
2174 2186 0.946221 CGTCTCCACCACAGTGCTTC 60.946 60.000 0.00 0.00 43.09 3.86
2175 2187 0.106708 GTCTCCACCACAGTGCTTCA 59.893 55.000 0.00 0.00 43.09 3.02
2176 2188 0.106708 TCTCCACCACAGTGCTTCAC 59.893 55.000 0.00 0.00 43.09 3.18
2177 2189 0.107456 CTCCACCACAGTGCTTCACT 59.893 55.000 0.00 0.00 46.51 3.41
2178 2190 0.546122 TCCACCACAGTGCTTCACTT 59.454 50.000 0.00 0.00 42.59 3.16
2181 2193 1.600957 CACCACAGTGCTTCACTTCTG 59.399 52.381 0.00 0.00 42.59 3.02
2187 2199 1.345741 AGTGCTTCACTTCTGCTGCTA 59.654 47.619 0.00 0.00 42.59 3.49
2191 2203 3.196469 TGCTTCACTTCTGCTGCTACTAT 59.804 43.478 0.00 0.00 0.00 2.12
2199 2211 2.492088 TCTGCTGCTACTATGTTCGTGT 59.508 45.455 0.00 0.00 0.00 4.49
2203 2215 3.487574 GCTGCTACTATGTTCGTGTCATC 59.512 47.826 0.00 0.00 0.00 2.92
2216 2228 2.279921 CGTGTCATCGTGTGCTTATCAG 59.720 50.000 0.00 0.00 0.00 2.90
2235 2247 5.791336 TCAGCTCCGTGTGATAATAAGAT 57.209 39.130 0.00 0.00 0.00 2.40
2264 2276 1.799519 GTGAGACTGACTGCGAGCG 60.800 63.158 0.00 0.00 0.00 5.03
2269 2281 0.368227 GACTGACTGCGAGCGATTTG 59.632 55.000 0.00 0.00 0.00 2.32
2295 2307 7.375017 GTGTTTCCACATTCAAACTACTTTACG 59.625 37.037 0.00 0.00 41.44 3.18
2316 2328 4.328983 ACGTATGTACTGCTATTTGTGTGC 59.671 41.667 0.00 0.00 0.00 4.57
2385 2397 0.602905 GCGTGTGCTAGTTGGGAACT 60.603 55.000 0.00 0.00 45.40 3.01
2408 2420 8.923609 ACTATGTATGATCTCGCATATTTCAG 57.076 34.615 0.00 0.00 33.67 3.02
2414 2426 5.178061 TGATCTCGCATATTTCAGTTGTGT 58.822 37.500 0.00 0.00 0.00 3.72
2424 2436 7.860373 GCATATTTCAGTTGTGTCTGTTAAACA 59.140 33.333 0.00 0.00 36.85 2.83
2432 2444 9.567848 CAGTTGTGTCTGTTAAACAAAAGTATT 57.432 29.630 0.00 0.00 35.70 1.89
2456 2468 5.532406 TGGCTTGTGATTTATAATCCTCAGC 59.468 40.000 0.00 0.00 0.00 4.26
2457 2469 5.767168 GGCTTGTGATTTATAATCCTCAGCT 59.233 40.000 0.00 0.00 0.00 4.24
2458 2470 6.072783 GGCTTGTGATTTATAATCCTCAGCTC 60.073 42.308 0.00 0.00 0.00 4.09
2459 2471 6.484643 GCTTGTGATTTATAATCCTCAGCTCA 59.515 38.462 0.00 0.00 0.00 4.26
2460 2472 7.307870 GCTTGTGATTTATAATCCTCAGCTCAG 60.308 40.741 0.00 0.00 0.00 3.35
2472 2484 6.343716 TCCTCAGCTCAGATATTCATCTTC 57.656 41.667 0.00 0.00 39.62 2.87
2504 2516 3.484649 GCTTGTGATTCAATAATGCAGCG 59.515 43.478 0.00 0.00 35.35 5.18
2525 2537 2.821969 GTCTAGGGACGAGTGGTTTGTA 59.178 50.000 0.00 0.00 32.47 2.41
2543 2555 0.034574 TATGTGGTGGTGTGGATGCC 60.035 55.000 0.00 0.00 0.00 4.40
2550 2562 2.048603 GGTGTGGATGCCCTGCTTC 61.049 63.158 0.00 0.00 32.92 3.86
2554 2566 0.034670 GTGGATGCCCTGCTTCTTCT 60.035 55.000 2.58 0.00 33.95 2.85
2561 2573 1.163554 CCCTGCTTCTTCTCTGTTGC 58.836 55.000 0.00 0.00 0.00 4.17
2565 2577 2.877168 CTGCTTCTTCTCTGTTGCTGTT 59.123 45.455 0.00 0.00 0.00 3.16
2592 2604 0.529378 GGTGTGGTCTGTAGGTACCG 59.471 60.000 6.18 0.00 38.70 4.02
2604 2616 2.629017 AGGTACCGGAGTTTCCCTTA 57.371 50.000 9.46 0.00 31.13 2.69
2621 2633 2.483876 CTTATGCTATCACGGTGGTGG 58.516 52.381 8.50 4.07 44.50 4.61
2629 2641 3.091190 ACGGTGGTGGGTGTGGAA 61.091 61.111 0.00 0.00 0.00 3.53
2650 2662 1.288127 GGCTCCTTGCTGCACTTTG 59.712 57.895 0.00 0.00 42.39 2.77
2682 2694 2.159014 TCGTTGTTGTGTTGTAGCCTCT 60.159 45.455 0.00 0.00 0.00 3.69
2732 2745 2.747855 CGGTGCTCCTTGCCCTTC 60.748 66.667 2.85 0.00 42.00 3.46
2780 2793 0.731417 CGGCTGATTGGAGCTCTTTG 59.269 55.000 14.64 0.00 39.11 2.77
2782 2795 1.742268 GGCTGATTGGAGCTCTTTGTC 59.258 52.381 14.64 7.71 39.11 3.18
2889 2902 2.970974 GCCCTGTTGTCGCTTCAGC 61.971 63.158 0.00 0.00 37.78 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.054875 CAGGAGTCCAAACATCATCCAGA 60.055 47.826 12.86 0.00 0.00 3.86
5 6 3.054875 TCAGGAGTCCAAACATCATCCAG 60.055 47.826 12.86 0.00 0.00 3.86
25 26 7.148255 ACGCTAGACAAATCATTAAATGCTTCA 60.148 33.333 0.00 0.00 0.00 3.02
49 50 7.615582 ACCCATATCATTATGAATAAGCACG 57.384 36.000 0.00 0.00 37.94 5.34
77 78 2.742053 CCCTTGTTGTGATTACCAGTCG 59.258 50.000 0.00 0.00 0.00 4.18
146 147 3.077359 CCTTGTCTTCAGGTAAAGCTGG 58.923 50.000 9.15 0.00 0.00 4.85
157 158 1.918262 AGATCCCATGCCTTGTCTTCA 59.082 47.619 0.00 0.00 0.00 3.02
181 182 5.308825 TCTCTTGGAAAGGCTTTCTTACAG 58.691 41.667 32.28 23.48 46.24 2.74
237 238 5.741011 TGCTAACTATTTCCTCCGACAAAT 58.259 37.500 0.00 0.00 0.00 2.32
244 245 4.261801 TGCACTTGCTAACTATTTCCTCC 58.738 43.478 2.33 0.00 42.66 4.30
438 439 7.594758 TGCAGTATAAGAAACAACATTTCAAGC 59.405 33.333 2.51 0.00 0.00 4.01
518 519 1.067582 CGATGAACCCCTCGGCTAC 59.932 63.158 0.00 0.00 0.00 3.58
565 566 1.571955 TCAGATAGCCTTCTGCCACA 58.428 50.000 8.32 0.00 42.37 4.17
629 630 3.887621 TTCCTTCATCCTACCGAAGTG 57.112 47.619 0.00 0.00 37.52 3.16
631 632 5.023533 TGAATTCCTTCATCCTACCGAAG 57.976 43.478 2.27 0.00 36.46 3.79
634 635 4.672587 TCTGAATTCCTTCATCCTACCG 57.327 45.455 2.27 0.00 40.52 4.02
695 696 4.702612 TGCAACACCAAAACAGTTCTTCTA 59.297 37.500 0.00 0.00 0.00 2.10
716 717 5.470098 ACCGTCCACATTTATTCTCATATGC 59.530 40.000 0.00 0.00 0.00 3.14
766 771 6.449635 TCATCTTTTTGTTTGTGCAGTACT 57.550 33.333 0.00 0.00 0.00 2.73
798 803 4.013728 GTGGTGCATATTGGAAACTGGTA 58.986 43.478 0.00 0.00 0.00 3.25
803 808 3.427503 CGAAGGTGGTGCATATTGGAAAC 60.428 47.826 0.00 0.00 0.00 2.78
841 846 4.025396 GTGAATGATGACTTGCTATCACCG 60.025 45.833 0.00 0.00 36.26 4.94
868 873 5.105716 TGACTCATTACACAGAAGAGGTAGC 60.106 44.000 0.00 0.00 0.00 3.58
1014 1023 9.688592 GTCAACAGATTTGAAAGATTCTCAATT 57.311 29.630 0.00 0.00 32.98 2.32
1023 1032 5.234329 GTCGAGTGTCAACAGATTTGAAAGA 59.766 40.000 0.00 0.00 0.00 2.52
1033 1042 4.556233 TCATAAAGGTCGAGTGTCAACAG 58.444 43.478 0.00 0.00 0.00 3.16
1111 1120 9.414295 TGAATCAATTGTTTTCTGAGCAAATAG 57.586 29.630 18.19 0.00 0.00 1.73
1135 1144 0.894141 GCAAGCTCTCTCCAGTCTGA 59.106 55.000 0.00 0.00 0.00 3.27
1140 1149 1.805345 CAACTTGCAAGCTCTCTCCAG 59.195 52.381 26.27 0.00 0.00 3.86
1195 1207 6.258068 GCTTGTAGCGTCTGAAGGTTTATTAT 59.742 38.462 0.00 0.00 0.00 1.28
1336 1348 5.700402 AGGTAGGACAAATACTGCATCTT 57.300 39.130 0.00 0.00 0.00 2.40
1362 1374 6.318144 CCTCATTCTCATTACTTGCATTCACT 59.682 38.462 0.00 0.00 0.00 3.41
1407 1419 1.904865 CCTTTGCAGGCTTGGCAGA 60.905 57.895 0.00 0.00 43.05 4.26
1476 1488 2.503356 CTGTCCCTCTACAGCTTGGAAT 59.497 50.000 0.00 0.00 40.40 3.01
1673 1685 3.908643 TCTCTAGCCGACTCAGACTAA 57.091 47.619 0.00 0.00 0.00 2.24
1676 1688 3.468770 TGTATCTCTAGCCGACTCAGAC 58.531 50.000 0.00 0.00 0.00 3.51
1744 1756 2.821366 CACCTCCGTCATGCTGCC 60.821 66.667 0.00 0.00 0.00 4.85
1764 1776 4.751431 AGGAACTCAATGCCAGCC 57.249 55.556 0.00 0.00 0.00 4.85
1784 1796 6.426328 GTGAAAGCCTAGATACTTGATGGATG 59.574 42.308 0.00 0.00 0.00 3.51
1785 1797 6.529220 GTGAAAGCCTAGATACTTGATGGAT 58.471 40.000 0.00 0.00 0.00 3.41
1789 1801 5.594725 TCTCGTGAAAGCCTAGATACTTGAT 59.405 40.000 0.00 0.00 0.00 2.57
1812 1824 4.185467 TGTCAAGAAGTCTCTGCTGATC 57.815 45.455 0.00 0.00 30.03 2.92
1821 1833 1.066573 CGCAGGGATGTCAAGAAGTCT 60.067 52.381 0.00 0.00 0.00 3.24
1835 1847 1.741770 GTAGAACACTGGCGCAGGG 60.742 63.158 10.83 8.77 41.28 4.45
1836 1848 0.602638 TTGTAGAACACTGGCGCAGG 60.603 55.000 10.83 3.05 35.51 4.85
1852 1864 3.369471 CGTGACAGTATCCCTTGGATTGT 60.369 47.826 0.15 0.69 39.79 2.71
1857 1869 0.178068 CCCGTGACAGTATCCCTTGG 59.822 60.000 0.00 0.00 0.00 3.61
1865 1877 1.466856 ATACTTCGCCCGTGACAGTA 58.533 50.000 0.00 0.00 0.00 2.74
1866 1878 0.606604 AATACTTCGCCCGTGACAGT 59.393 50.000 0.00 0.00 0.00 3.55
1867 1879 1.278238 GAATACTTCGCCCGTGACAG 58.722 55.000 0.00 0.00 0.00 3.51
1868 1880 0.108520 GGAATACTTCGCCCGTGACA 60.109 55.000 0.00 0.00 0.00 3.58
1869 1881 0.808847 GGGAATACTTCGCCCGTGAC 60.809 60.000 0.00 0.00 36.70 3.67
1870 1882 0.974010 AGGGAATACTTCGCCCGTGA 60.974 55.000 0.00 0.00 46.68 4.35
1871 1883 0.529992 GAGGGAATACTTCGCCCGTG 60.530 60.000 0.00 0.00 46.68 4.94
1872 1884 1.683418 GGAGGGAATACTTCGCCCGT 61.683 60.000 0.00 0.00 46.68 5.28
1876 1888 1.030457 TCTCGGAGGGAATACTTCGC 58.970 55.000 4.96 0.00 39.32 4.70
1877 1889 3.318275 TCAATCTCGGAGGGAATACTTCG 59.682 47.826 4.96 0.00 40.84 3.79
1879 1891 3.388350 GGTCAATCTCGGAGGGAATACTT 59.612 47.826 4.96 0.00 0.00 2.24
1880 1892 2.966516 GGTCAATCTCGGAGGGAATACT 59.033 50.000 4.96 0.00 0.00 2.12
1887 1899 1.067821 GTAGCAGGTCAATCTCGGAGG 59.932 57.143 4.96 0.00 0.00 4.30
1905 1917 3.031736 GCAGGTGATTGGGAGTAGAGTA 58.968 50.000 0.00 0.00 0.00 2.59
1910 1922 1.004277 GTTGGCAGGTGATTGGGAGTA 59.996 52.381 0.00 0.00 0.00 2.59
1911 1923 0.251341 GTTGGCAGGTGATTGGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
1912 1924 0.038744 AGTTGGCAGGTGATTGGGAG 59.961 55.000 0.00 0.00 0.00 4.30
1913 1925 1.281867 CTAGTTGGCAGGTGATTGGGA 59.718 52.381 0.00 0.00 0.00 4.37
1914 1926 1.683011 CCTAGTTGGCAGGTGATTGGG 60.683 57.143 0.00 0.00 0.00 4.12
1915 1927 1.004745 ACCTAGTTGGCAGGTGATTGG 59.995 52.381 0.00 0.00 44.89 3.16
1916 1928 2.496899 ACCTAGTTGGCAGGTGATTG 57.503 50.000 0.00 0.00 44.89 2.67
1922 1934 0.981183 TGGTACACCTAGTTGGCAGG 59.019 55.000 0.00 0.00 40.22 4.85
1948 1960 3.085952 TGGGGAAGGAAGCAAGTAATG 57.914 47.619 0.00 0.00 0.00 1.90
1949 1961 3.529319 AGATGGGGAAGGAAGCAAGTAAT 59.471 43.478 0.00 0.00 0.00 1.89
1950 1962 2.919602 AGATGGGGAAGGAAGCAAGTAA 59.080 45.455 0.00 0.00 0.00 2.24
1951 1963 2.505819 GAGATGGGGAAGGAAGCAAGTA 59.494 50.000 0.00 0.00 0.00 2.24
1952 1964 1.283321 GAGATGGGGAAGGAAGCAAGT 59.717 52.381 0.00 0.00 0.00 3.16
1953 1965 1.563410 AGAGATGGGGAAGGAAGCAAG 59.437 52.381 0.00 0.00 0.00 4.01
1954 1966 1.673767 AGAGATGGGGAAGGAAGCAA 58.326 50.000 0.00 0.00 0.00 3.91
1955 1967 2.568546 TAGAGATGGGGAAGGAAGCA 57.431 50.000 0.00 0.00 0.00 3.91
1956 1968 3.556004 CGATTAGAGATGGGGAAGGAAGC 60.556 52.174 0.00 0.00 0.00 3.86
1957 1969 3.643792 ACGATTAGAGATGGGGAAGGAAG 59.356 47.826 0.00 0.00 0.00 3.46
1958 1970 3.654273 ACGATTAGAGATGGGGAAGGAA 58.346 45.455 0.00 0.00 0.00 3.36
1959 1971 3.330126 ACGATTAGAGATGGGGAAGGA 57.670 47.619 0.00 0.00 0.00 3.36
1960 1972 4.153411 AGTACGATTAGAGATGGGGAAGG 58.847 47.826 0.00 0.00 0.00 3.46
1961 1973 5.183522 GGTAGTACGATTAGAGATGGGGAAG 59.816 48.000 0.00 0.00 0.00 3.46
1962 1974 5.075493 GGTAGTACGATTAGAGATGGGGAA 58.925 45.833 0.00 0.00 0.00 3.97
1963 1975 4.353191 AGGTAGTACGATTAGAGATGGGGA 59.647 45.833 0.00 0.00 0.00 4.81
1964 1976 4.664392 AGGTAGTACGATTAGAGATGGGG 58.336 47.826 0.00 0.00 0.00 4.96
1965 1977 5.768662 TCAAGGTAGTACGATTAGAGATGGG 59.231 44.000 0.00 0.00 0.00 4.00
1966 1978 6.262496 TGTCAAGGTAGTACGATTAGAGATGG 59.738 42.308 0.00 0.00 0.00 3.51
1967 1979 7.260558 TGTCAAGGTAGTACGATTAGAGATG 57.739 40.000 0.00 0.00 0.00 2.90
1968 1980 7.502895 ACATGTCAAGGTAGTACGATTAGAGAT 59.497 37.037 0.00 0.00 0.00 2.75
1969 1981 6.827251 ACATGTCAAGGTAGTACGATTAGAGA 59.173 38.462 0.00 0.00 0.00 3.10
1970 1982 7.028926 ACATGTCAAGGTAGTACGATTAGAG 57.971 40.000 0.00 0.00 0.00 2.43
1971 1983 7.121611 TCAACATGTCAAGGTAGTACGATTAGA 59.878 37.037 0.00 0.00 0.00 2.10
1972 1984 7.255569 TCAACATGTCAAGGTAGTACGATTAG 58.744 38.462 0.00 0.00 0.00 1.73
1973 1985 7.160547 TCAACATGTCAAGGTAGTACGATTA 57.839 36.000 0.00 0.00 0.00 1.75
1974 1986 6.032956 TCAACATGTCAAGGTAGTACGATT 57.967 37.500 0.00 0.00 0.00 3.34
1975 1987 5.654603 TCAACATGTCAAGGTAGTACGAT 57.345 39.130 0.00 0.00 0.00 3.73
1976 1988 5.456548 TTCAACATGTCAAGGTAGTACGA 57.543 39.130 0.00 0.00 0.00 3.43
1977 1989 6.367695 TCATTTCAACATGTCAAGGTAGTACG 59.632 38.462 0.00 0.00 0.00 3.67
1978 1990 7.667043 TCATTTCAACATGTCAAGGTAGTAC 57.333 36.000 0.00 0.00 0.00 2.73
1979 1991 8.862325 AATCATTTCAACATGTCAAGGTAGTA 57.138 30.769 0.00 0.00 0.00 1.82
1980 1992 7.765695 AATCATTTCAACATGTCAAGGTAGT 57.234 32.000 0.00 0.00 0.00 2.73
1981 1993 7.543172 CCAAATCATTTCAACATGTCAAGGTAG 59.457 37.037 0.00 0.00 0.00 3.18
1982 1994 7.015098 ACCAAATCATTTCAACATGTCAAGGTA 59.985 33.333 0.00 0.00 0.00 3.08
1983 1995 6.183360 ACCAAATCATTTCAACATGTCAAGGT 60.183 34.615 0.00 0.00 0.00 3.50
1984 1996 6.146510 CACCAAATCATTTCAACATGTCAAGG 59.853 38.462 0.00 0.00 0.00 3.61
1985 1997 6.702723 ACACCAAATCATTTCAACATGTCAAG 59.297 34.615 0.00 0.00 0.00 3.02
1986 1998 6.580788 ACACCAAATCATTTCAACATGTCAA 58.419 32.000 0.00 0.00 0.00 3.18
1987 1999 6.159299 ACACCAAATCATTTCAACATGTCA 57.841 33.333 0.00 0.00 0.00 3.58
1988 2000 6.073657 CCAACACCAAATCATTTCAACATGTC 60.074 38.462 0.00 0.00 0.00 3.06
1989 2001 5.759273 CCAACACCAAATCATTTCAACATGT 59.241 36.000 0.00 0.00 0.00 3.21
1990 2002 5.759273 ACCAACACCAAATCATTTCAACATG 59.241 36.000 0.00 0.00 0.00 3.21
1991 2003 5.927819 ACCAACACCAAATCATTTCAACAT 58.072 33.333 0.00 0.00 0.00 2.71
1992 2004 5.350504 ACCAACACCAAATCATTTCAACA 57.649 34.783 0.00 0.00 0.00 3.33
1993 2005 7.961325 ATAACCAACACCAAATCATTTCAAC 57.039 32.000 0.00 0.00 0.00 3.18
1994 2006 9.650539 CATATAACCAACACCAAATCATTTCAA 57.349 29.630 0.00 0.00 0.00 2.69
1995 2007 7.763528 GCATATAACCAACACCAAATCATTTCA 59.236 33.333 0.00 0.00 0.00 2.69
1996 2008 7.763528 TGCATATAACCAACACCAAATCATTTC 59.236 33.333 0.00 0.00 0.00 2.17
1997 2009 7.619050 TGCATATAACCAACACCAAATCATTT 58.381 30.769 0.00 0.00 0.00 2.32
1998 2010 7.180322 TGCATATAACCAACACCAAATCATT 57.820 32.000 0.00 0.00 0.00 2.57
1999 2011 6.183360 CCTGCATATAACCAACACCAAATCAT 60.183 38.462 0.00 0.00 0.00 2.45
2000 2012 5.126869 CCTGCATATAACCAACACCAAATCA 59.873 40.000 0.00 0.00 0.00 2.57
2001 2013 5.127031 ACCTGCATATAACCAACACCAAATC 59.873 40.000 0.00 0.00 0.00 2.17
2002 2014 5.022787 ACCTGCATATAACCAACACCAAAT 58.977 37.500 0.00 0.00 0.00 2.32
2003 2015 4.411927 ACCTGCATATAACCAACACCAAA 58.588 39.130 0.00 0.00 0.00 3.28
2004 2016 4.013728 GACCTGCATATAACCAACACCAA 58.986 43.478 0.00 0.00 0.00 3.67
2005 2017 3.009584 TGACCTGCATATAACCAACACCA 59.990 43.478 0.00 0.00 0.00 4.17
2006 2018 3.377172 GTGACCTGCATATAACCAACACC 59.623 47.826 0.00 0.00 0.00 4.16
2007 2019 4.006989 TGTGACCTGCATATAACCAACAC 58.993 43.478 0.00 0.00 0.00 3.32
2008 2020 4.293662 TGTGACCTGCATATAACCAACA 57.706 40.909 0.00 0.00 0.00 3.33
2009 2021 4.498009 GCATGTGACCTGCATATAACCAAC 60.498 45.833 7.98 0.00 39.46 3.77
2010 2022 3.631686 GCATGTGACCTGCATATAACCAA 59.368 43.478 7.98 0.00 39.46 3.67
2011 2023 3.213506 GCATGTGACCTGCATATAACCA 58.786 45.455 7.98 0.00 39.46 3.67
2012 2024 2.554032 GGCATGTGACCTGCATATAACC 59.446 50.000 14.52 0.00 41.47 2.85
2013 2025 2.224079 CGGCATGTGACCTGCATATAAC 59.776 50.000 14.52 0.00 41.47 1.89
2014 2026 2.493035 CGGCATGTGACCTGCATATAA 58.507 47.619 14.52 0.00 41.47 0.98
2015 2027 1.270785 CCGGCATGTGACCTGCATATA 60.271 52.381 14.52 0.00 41.47 0.86
2016 2028 0.535780 CCGGCATGTGACCTGCATAT 60.536 55.000 14.52 0.00 41.47 1.78
2017 2029 1.153188 CCGGCATGTGACCTGCATA 60.153 57.895 14.52 0.00 41.47 3.14
2018 2030 2.438975 CCGGCATGTGACCTGCAT 60.439 61.111 14.52 0.00 41.47 3.96
2019 2031 3.189376 TTCCGGCATGTGACCTGCA 62.189 57.895 14.52 0.00 41.47 4.41
2020 2032 2.359850 TTCCGGCATGTGACCTGC 60.360 61.111 4.16 4.16 38.93 4.85
2021 2033 1.746615 CCTTCCGGCATGTGACCTG 60.747 63.158 0.00 0.00 0.00 4.00
2022 2034 0.907704 TACCTTCCGGCATGTGACCT 60.908 55.000 0.00 0.00 0.00 3.85
2023 2035 0.462047 CTACCTTCCGGCATGTGACC 60.462 60.000 0.00 0.00 0.00 4.02
2024 2036 0.462047 CCTACCTTCCGGCATGTGAC 60.462 60.000 0.00 0.00 0.00 3.67
2025 2037 0.616395 TCCTACCTTCCGGCATGTGA 60.616 55.000 0.00 0.00 0.00 3.58
2026 2038 0.251916 TTCCTACCTTCCGGCATGTG 59.748 55.000 0.00 0.00 0.00 3.21
2027 2039 0.541863 CTTCCTACCTTCCGGCATGT 59.458 55.000 0.00 0.00 0.00 3.21
2028 2040 0.179045 CCTTCCTACCTTCCGGCATG 60.179 60.000 0.00 0.00 0.00 4.06
2029 2041 0.326238 TCCTTCCTACCTTCCGGCAT 60.326 55.000 0.00 0.00 0.00 4.40
2030 2042 0.545787 TTCCTTCCTACCTTCCGGCA 60.546 55.000 0.00 0.00 0.00 5.69
2031 2043 0.178301 CTTCCTTCCTACCTTCCGGC 59.822 60.000 0.00 0.00 0.00 6.13
2032 2044 0.831307 CCTTCCTTCCTACCTTCCGG 59.169 60.000 0.00 0.00 0.00 5.14
2033 2045 1.861982 TCCTTCCTTCCTACCTTCCG 58.138 55.000 0.00 0.00 0.00 4.30
2034 2046 3.451890 TCTTCCTTCCTTCCTACCTTCC 58.548 50.000 0.00 0.00 0.00 3.46
2035 2047 3.452990 CCTCTTCCTTCCTTCCTACCTTC 59.547 52.174 0.00 0.00 0.00 3.46
2036 2048 3.455849 CCTCTTCCTTCCTTCCTACCTT 58.544 50.000 0.00 0.00 0.00 3.50
2037 2049 2.894864 GCCTCTTCCTTCCTTCCTACCT 60.895 54.545 0.00 0.00 0.00 3.08
2038 2050 1.487142 GCCTCTTCCTTCCTTCCTACC 59.513 57.143 0.00 0.00 0.00 3.18
2039 2051 2.473070 AGCCTCTTCCTTCCTTCCTAC 58.527 52.381 0.00 0.00 0.00 3.18
2040 2052 2.950990 AGCCTCTTCCTTCCTTCCTA 57.049 50.000 0.00 0.00 0.00 2.94
2041 2053 1.912731 GAAGCCTCTTCCTTCCTTCCT 59.087 52.381 0.00 0.00 34.12 3.36
2042 2054 1.630878 TGAAGCCTCTTCCTTCCTTCC 59.369 52.381 4.35 0.00 38.29 3.46
2043 2055 2.616765 GGTGAAGCCTCTTCCTTCCTTC 60.617 54.545 4.35 0.00 38.29 3.46
2044 2056 1.352687 GGTGAAGCCTCTTCCTTCCTT 59.647 52.381 4.35 0.00 38.29 3.36
2045 2057 0.988063 GGTGAAGCCTCTTCCTTCCT 59.012 55.000 4.35 0.00 38.29 3.36
2046 2058 0.693049 TGGTGAAGCCTCTTCCTTCC 59.307 55.000 4.35 5.30 38.29 3.46
2047 2059 1.814793 GTGGTGAAGCCTCTTCCTTC 58.185 55.000 4.35 0.00 39.26 3.46
2048 2060 0.035458 CGTGGTGAAGCCTCTTCCTT 59.965 55.000 4.35 0.00 38.35 3.36
2049 2061 0.832135 TCGTGGTGAAGCCTCTTCCT 60.832 55.000 4.35 0.00 38.35 3.36
2050 2062 0.390472 CTCGTGGTGAAGCCTCTTCC 60.390 60.000 4.35 0.00 38.35 3.46
2051 2063 0.318762 ACTCGTGGTGAAGCCTCTTC 59.681 55.000 0.00 0.00 38.35 2.87
2052 2064 0.759346 AACTCGTGGTGAAGCCTCTT 59.241 50.000 0.00 0.00 38.35 2.85
2053 2065 1.629043 TAACTCGTGGTGAAGCCTCT 58.371 50.000 0.00 0.00 38.35 3.69
2054 2066 2.338500 CTTAACTCGTGGTGAAGCCTC 58.662 52.381 0.00 0.00 38.35 4.70
2055 2067 1.002087 CCTTAACTCGTGGTGAAGCCT 59.998 52.381 3.85 0.00 35.53 4.58
2056 2068 1.439679 CCTTAACTCGTGGTGAAGCC 58.560 55.000 3.85 0.00 35.53 4.35
2057 2069 0.796927 GCCTTAACTCGTGGTGAAGC 59.203 55.000 3.85 0.00 35.53 3.86
2058 2070 1.068474 CGCCTTAACTCGTGGTGAAG 58.932 55.000 0.00 0.00 36.40 3.02
2059 2071 0.947180 GCGCCTTAACTCGTGGTGAA 60.947 55.000 0.00 0.00 33.56 3.18
2060 2072 1.373748 GCGCCTTAACTCGTGGTGA 60.374 57.895 0.00 0.00 33.56 4.02
2061 2073 1.374252 AGCGCCTTAACTCGTGGTG 60.374 57.895 2.29 0.00 34.75 4.17
2062 2074 1.374252 CAGCGCCTTAACTCGTGGT 60.374 57.895 2.29 0.00 0.00 4.16
2063 2075 0.460284 ATCAGCGCCTTAACTCGTGG 60.460 55.000 2.29 0.00 0.00 4.94
2064 2076 0.647410 CATCAGCGCCTTAACTCGTG 59.353 55.000 2.29 0.00 0.00 4.35
2065 2077 1.084370 GCATCAGCGCCTTAACTCGT 61.084 55.000 2.29 0.00 0.00 4.18
2066 2078 1.083806 TGCATCAGCGCCTTAACTCG 61.084 55.000 2.29 0.00 46.23 4.18
2067 2079 1.262683 GATGCATCAGCGCCTTAACTC 59.737 52.381 21.92 0.00 46.23 3.01
2068 2080 1.303309 GATGCATCAGCGCCTTAACT 58.697 50.000 21.92 0.00 46.23 2.24
2069 2081 1.016627 TGATGCATCAGCGCCTTAAC 58.983 50.000 25.42 0.00 46.23 2.01
2070 2082 1.016627 GTGATGCATCAGCGCCTTAA 58.983 50.000 29.38 1.19 46.23 1.85
2071 2083 0.107752 TGTGATGCATCAGCGCCTTA 60.108 50.000 29.38 1.99 46.23 2.69
2072 2084 1.377594 TGTGATGCATCAGCGCCTT 60.378 52.632 29.38 0.00 46.23 4.35
2073 2085 2.110967 GTGTGATGCATCAGCGCCT 61.111 57.895 29.38 0.00 46.23 5.52
2074 2086 2.044832 GAGTGTGATGCATCAGCGCC 62.045 60.000 29.38 17.67 46.23 6.53
2075 2087 1.351012 GAGTGTGATGCATCAGCGC 59.649 57.895 29.38 25.82 46.23 5.92
2076 2088 1.081094 TTGAGTGTGATGCATCAGCG 58.919 50.000 29.38 0.00 46.23 5.18
2077 2089 2.422479 ACATTGAGTGTGATGCATCAGC 59.578 45.455 29.38 23.05 40.28 4.26
2108 2120 4.686191 ATAGAAGATTAGCAGCAGCACT 57.314 40.909 3.17 0.00 45.49 4.40
2109 2121 7.275341 CACTATATAGAAGATTAGCAGCAGCAC 59.725 40.741 16.79 0.00 45.49 4.40
2110 2122 7.318893 CACTATATAGAAGATTAGCAGCAGCA 58.681 38.462 16.79 0.00 45.49 4.41
2111 2123 6.255453 GCACTATATAGAAGATTAGCAGCAGC 59.745 42.308 16.79 0.00 42.56 5.25
2112 2124 7.546358 AGCACTATATAGAAGATTAGCAGCAG 58.454 38.462 16.79 0.00 0.00 4.24
2113 2125 7.473735 AGCACTATATAGAAGATTAGCAGCA 57.526 36.000 16.79 0.00 0.00 4.41
2114 2126 8.031864 TGAAGCACTATATAGAAGATTAGCAGC 58.968 37.037 16.79 4.67 0.00 5.25
2115 2127 9.920133 TTGAAGCACTATATAGAAGATTAGCAG 57.080 33.333 16.79 0.00 0.00 4.24
2129 2141 9.967346 GTGAGATAGTACATTTGAAGCACTATA 57.033 33.333 0.00 0.00 33.64 1.31
2130 2142 7.649705 CGTGAGATAGTACATTTGAAGCACTAT 59.350 37.037 0.00 0.00 35.63 2.12
2131 2143 6.972901 CGTGAGATAGTACATTTGAAGCACTA 59.027 38.462 0.00 0.00 0.00 2.74
2132 2144 5.807520 CGTGAGATAGTACATTTGAAGCACT 59.192 40.000 0.00 0.00 0.00 4.40
2133 2145 5.577164 ACGTGAGATAGTACATTTGAAGCAC 59.423 40.000 0.00 0.00 0.00 4.40
2134 2146 5.720202 ACGTGAGATAGTACATTTGAAGCA 58.280 37.500 0.00 0.00 0.00 3.91
2135 2147 6.037098 AGACGTGAGATAGTACATTTGAAGC 58.963 40.000 0.00 0.00 0.00 3.86
2136 2148 6.693545 GGAGACGTGAGATAGTACATTTGAAG 59.306 42.308 0.00 0.00 0.00 3.02
2137 2149 6.152154 TGGAGACGTGAGATAGTACATTTGAA 59.848 38.462 0.00 0.00 0.00 2.69
2138 2150 5.650703 TGGAGACGTGAGATAGTACATTTGA 59.349 40.000 0.00 0.00 0.00 2.69
2139 2151 5.744345 GTGGAGACGTGAGATAGTACATTTG 59.256 44.000 0.00 0.00 0.00 2.32
2140 2152 5.163540 GGTGGAGACGTGAGATAGTACATTT 60.164 44.000 0.00 0.00 0.00 2.32
2141 2153 4.338682 GGTGGAGACGTGAGATAGTACATT 59.661 45.833 0.00 0.00 0.00 2.71
2142 2154 3.884091 GGTGGAGACGTGAGATAGTACAT 59.116 47.826 0.00 0.00 0.00 2.29
2143 2155 3.276857 GGTGGAGACGTGAGATAGTACA 58.723 50.000 0.00 0.00 0.00 2.90
2144 2156 3.065095 GTGGTGGAGACGTGAGATAGTAC 59.935 52.174 0.00 0.00 0.00 2.73
2145 2157 3.276857 GTGGTGGAGACGTGAGATAGTA 58.723 50.000 0.00 0.00 0.00 1.82
2146 2158 2.093106 GTGGTGGAGACGTGAGATAGT 58.907 52.381 0.00 0.00 0.00 2.12
2147 2159 2.092323 TGTGGTGGAGACGTGAGATAG 58.908 52.381 0.00 0.00 0.00 2.08
2148 2160 2.092323 CTGTGGTGGAGACGTGAGATA 58.908 52.381 0.00 0.00 0.00 1.98
2149 2161 0.891373 CTGTGGTGGAGACGTGAGAT 59.109 55.000 0.00 0.00 0.00 2.75
2150 2162 0.467474 ACTGTGGTGGAGACGTGAGA 60.467 55.000 0.00 0.00 0.00 3.27
2151 2163 0.319040 CACTGTGGTGGAGACGTGAG 60.319 60.000 0.00 0.00 39.59 3.51
2152 2164 1.739667 CACTGTGGTGGAGACGTGA 59.260 57.895 0.00 0.00 39.59 4.35
2153 2165 1.956170 GCACTGTGGTGGAGACGTG 60.956 63.158 10.21 0.00 43.18 4.49
2154 2166 1.686325 AAGCACTGTGGTGGAGACGT 61.686 55.000 13.85 0.00 43.18 4.34
2155 2167 0.946221 GAAGCACTGTGGTGGAGACG 60.946 60.000 13.85 0.00 43.18 4.18
2156 2168 0.106708 TGAAGCACTGTGGTGGAGAC 59.893 55.000 13.85 4.27 43.18 3.36
2157 2169 0.106708 GTGAAGCACTGTGGTGGAGA 59.893 55.000 13.85 0.00 43.18 3.71
2158 2170 0.107456 AGTGAAGCACTGTGGTGGAG 59.893 55.000 13.85 0.00 43.63 3.86
2159 2171 0.546122 AAGTGAAGCACTGTGGTGGA 59.454 50.000 13.85 0.06 44.62 4.02
2160 2172 0.947244 GAAGTGAAGCACTGTGGTGG 59.053 55.000 13.85 0.00 44.62 4.61
2161 2173 1.600957 CAGAAGTGAAGCACTGTGGTG 59.399 52.381 13.85 0.00 44.62 4.17
2162 2174 1.959042 CAGAAGTGAAGCACTGTGGT 58.041 50.000 6.68 6.68 44.62 4.16
2163 2175 0.590195 GCAGAAGTGAAGCACTGTGG 59.410 55.000 10.21 0.00 44.62 4.17
2164 2176 1.263484 CAGCAGAAGTGAAGCACTGTG 59.737 52.381 2.76 2.76 44.62 3.66
2165 2177 1.590932 CAGCAGAAGTGAAGCACTGT 58.409 50.000 0.22 0.00 44.62 3.55
2166 2178 0.237761 GCAGCAGAAGTGAAGCACTG 59.762 55.000 0.22 0.00 44.62 3.66
2168 2180 1.462670 GTAGCAGCAGAAGTGAAGCAC 59.537 52.381 0.00 0.00 34.10 4.40
2169 2181 1.345741 AGTAGCAGCAGAAGTGAAGCA 59.654 47.619 0.00 0.00 0.00 3.91
2170 2182 2.091852 AGTAGCAGCAGAAGTGAAGC 57.908 50.000 0.00 0.00 0.00 3.86
2171 2183 4.753233 ACATAGTAGCAGCAGAAGTGAAG 58.247 43.478 0.00 0.00 0.00 3.02
2172 2184 4.808414 ACATAGTAGCAGCAGAAGTGAA 57.192 40.909 0.00 0.00 0.00 3.18
2173 2185 4.675408 CGAACATAGTAGCAGCAGAAGTGA 60.675 45.833 0.00 0.00 0.00 3.41
2174 2186 3.549471 CGAACATAGTAGCAGCAGAAGTG 59.451 47.826 0.00 0.00 0.00 3.16
2175 2187 3.193691 ACGAACATAGTAGCAGCAGAAGT 59.806 43.478 0.00 0.00 0.00 3.01
2176 2188 3.549471 CACGAACATAGTAGCAGCAGAAG 59.451 47.826 0.00 0.00 0.00 2.85
2177 2189 3.056821 ACACGAACATAGTAGCAGCAGAA 60.057 43.478 0.00 0.00 0.00 3.02
2178 2190 2.492088 ACACGAACATAGTAGCAGCAGA 59.508 45.455 0.00 0.00 0.00 4.26
2181 2193 2.876091 TGACACGAACATAGTAGCAGC 58.124 47.619 0.00 0.00 0.00 5.25
2187 2199 3.242518 CACACGATGACACGAACATAGT 58.757 45.455 0.00 0.00 34.87 2.12
2191 2203 0.249280 AGCACACGATGACACGAACA 60.249 50.000 0.00 0.00 37.03 3.18
2199 2211 2.481969 GGAGCTGATAAGCACACGATGA 60.482 50.000 4.45 0.00 37.25 2.92
2203 2215 0.458543 ACGGAGCTGATAAGCACACG 60.459 55.000 4.45 8.09 37.25 4.49
2216 2228 3.433615 GCCATCTTATTATCACACGGAGC 59.566 47.826 0.00 0.00 0.00 4.70
2217 2229 4.449068 GTGCCATCTTATTATCACACGGAG 59.551 45.833 0.00 0.00 0.00 4.63
2218 2230 4.100963 AGTGCCATCTTATTATCACACGGA 59.899 41.667 0.00 0.00 32.22 4.69
2219 2231 4.380531 AGTGCCATCTTATTATCACACGG 58.619 43.478 0.00 0.00 32.22 4.94
2220 2232 5.991328 AAGTGCCATCTTATTATCACACG 57.009 39.130 0.00 0.00 32.22 4.49
2221 2233 7.385205 ACGATAAGTGCCATCTTATTATCACAC 59.615 37.037 0.00 0.00 39.69 3.82
2295 2307 4.782195 GCGCACACAAATAGCAGTACATAC 60.782 45.833 0.30 0.00 0.00 2.39
2316 2328 5.807520 ACTCAAGTCTGTCTTACAATATGCG 59.192 40.000 0.00 0.00 34.66 4.73
2385 2397 9.143631 CAACTGAAATATGCGAGATCATACATA 57.856 33.333 0.00 0.00 32.36 2.29
2408 2420 8.803799 CCAATACTTTTGTTTAACAGACACAAC 58.196 33.333 0.00 0.00 30.12 3.32
2414 2426 7.704472 CACAAGCCAATACTTTTGTTTAACAGA 59.296 33.333 0.00 0.00 31.84 3.41
2432 2444 5.532406 GCTGAGGATTATAAATCACAAGCCA 59.468 40.000 2.36 0.00 30.05 4.75
2456 2468 9.210329 CCAATTCTCTGAAGATGAATATCTGAG 57.790 37.037 0.00 0.00 42.80 3.35
2457 2469 7.660617 GCCAATTCTCTGAAGATGAATATCTGA 59.339 37.037 0.00 0.00 42.80 3.27
2458 2470 7.662258 AGCCAATTCTCTGAAGATGAATATCTG 59.338 37.037 0.00 0.00 42.80 2.90
2459 2471 7.747690 AGCCAATTCTCTGAAGATGAATATCT 58.252 34.615 0.00 0.00 45.51 1.98
2460 2472 7.982761 AGCCAATTCTCTGAAGATGAATATC 57.017 36.000 0.00 0.00 31.16 1.63
2472 2484 5.381174 TTGAATCACAAGCCAATTCTCTG 57.619 39.130 0.00 0.00 34.20 3.35
2504 2516 1.617357 ACAAACCACTCGTCCCTAGAC 59.383 52.381 0.00 0.00 39.83 2.59
2525 2537 1.304381 GGCATCCACACCACCACAT 60.304 57.895 0.00 0.00 0.00 3.21
2543 2555 1.805345 CAGCAACAGAGAAGAAGCAGG 59.195 52.381 0.00 0.00 0.00 4.85
2550 2562 2.805099 GGAGACAACAGCAACAGAGAAG 59.195 50.000 0.00 0.00 0.00 2.85
2554 2566 1.202687 CCAGGAGACAACAGCAACAGA 60.203 52.381 0.00 0.00 0.00 3.41
2561 2573 0.469917 ACCACACCAGGAGACAACAG 59.530 55.000 0.00 0.00 0.00 3.16
2565 2577 0.398522 ACAGACCACACCAGGAGACA 60.399 55.000 0.00 0.00 0.00 3.41
2592 2604 4.058817 CGTGATAGCATAAGGGAAACTCC 58.941 47.826 0.00 0.00 35.23 3.85
2604 2616 1.271840 ACCCACCACCGTGATAGCAT 61.272 55.000 0.00 0.00 43.14 3.79
2621 2633 1.026718 CAAGGAGCCGATTCCACACC 61.027 60.000 7.73 0.00 39.84 4.16
2780 2793 3.251571 GAGAAACATCACCACCGTAGAC 58.748 50.000 0.00 0.00 0.00 2.59
2782 2795 2.259618 CGAGAAACATCACCACCGTAG 58.740 52.381 0.00 0.00 0.00 3.51
2824 2837 2.423538 GAGAACCATCATTTTCCACCGG 59.576 50.000 0.00 0.00 0.00 5.28
2825 2838 2.423538 GGAGAACCATCATTTTCCACCG 59.576 50.000 0.00 0.00 33.87 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.