Multiple sequence alignment - TraesCS7A01G046300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G046300 chr7A 100.000 3548 0 0 1 3548 20979629 20983176 0.000000e+00 6553
1 TraesCS7A01G046300 chr7A 83.703 2933 441 30 638 3548 20482469 20485386 0.000000e+00 2734
2 TraesCS7A01G046300 chr7A 84.072 2844 419 23 723 3548 20966032 20968859 0.000000e+00 2712
3 TraesCS7A01G046300 chr7A 80.929 1012 166 19 358 1360 20987359 20988352 0.000000e+00 774
4 TraesCS7A01G046300 chr7A 77.805 401 75 10 456 851 20456212 20456603 5.920000e-58 235
5 TraesCS7A01G046300 chr4A 83.946 3239 384 55 360 3548 693881203 693878051 0.000000e+00 2976
6 TraesCS7A01G046300 chr7D 83.442 3213 462 43 358 3548 89533623 89530459 0.000000e+00 2922
7 TraesCS7A01G046300 chr7D 84.148 2927 425 28 642 3548 20310524 20313431 0.000000e+00 2798
8 TraesCS7A01G046300 chr7D 84.886 2673 378 21 894 3548 20947063 20949727 0.000000e+00 2675
9 TraesCS7A01G046300 chr2A 84.001 3069 433 39 505 3548 733087324 733090359 0.000000e+00 2894
10 TraesCS7A01G046300 chr2D 83.339 3085 458 43 494 3548 598813599 598816657 0.000000e+00 2798
11 TraesCS7A01G046300 chr2B 83.323 3088 450 51 494 3548 727685558 727688613 0.000000e+00 2789
12 TraesCS7A01G046300 chr7B 83.218 2884 442 35 689 3548 601114181 601117046 0.000000e+00 2606


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G046300 chr7A 20979629 20983176 3547 False 6553 6553 100.000 1 3548 1 chr7A.!!$F4 3547
1 TraesCS7A01G046300 chr7A 20482469 20485386 2917 False 2734 2734 83.703 638 3548 1 chr7A.!!$F2 2910
2 TraesCS7A01G046300 chr7A 20966032 20968859 2827 False 2712 2712 84.072 723 3548 1 chr7A.!!$F3 2825
3 TraesCS7A01G046300 chr7A 20987359 20988352 993 False 774 774 80.929 358 1360 1 chr7A.!!$F5 1002
4 TraesCS7A01G046300 chr4A 693878051 693881203 3152 True 2976 2976 83.946 360 3548 1 chr4A.!!$R1 3188
5 TraesCS7A01G046300 chr7D 89530459 89533623 3164 True 2922 2922 83.442 358 3548 1 chr7D.!!$R1 3190
6 TraesCS7A01G046300 chr7D 20310524 20313431 2907 False 2798 2798 84.148 642 3548 1 chr7D.!!$F1 2906
7 TraesCS7A01G046300 chr7D 20947063 20949727 2664 False 2675 2675 84.886 894 3548 1 chr7D.!!$F2 2654
8 TraesCS7A01G046300 chr2A 733087324 733090359 3035 False 2894 2894 84.001 505 3548 1 chr2A.!!$F1 3043
9 TraesCS7A01G046300 chr2D 598813599 598816657 3058 False 2798 2798 83.339 494 3548 1 chr2D.!!$F1 3054
10 TraesCS7A01G046300 chr2B 727685558 727688613 3055 False 2789 2789 83.323 494 3548 1 chr2B.!!$F1 3054
11 TraesCS7A01G046300 chr7B 601114181 601117046 2865 False 2606 2606 83.218 689 3548 1 chr7B.!!$F1 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 621 0.309922 GAAGCGGATCATGCATGGTG 59.690 55.0 25.97 9.83 33.85 4.17 F
1548 1632 0.544357 TGGGGGTCGATGAGAACAGT 60.544 55.0 0.00 0.00 38.65 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1642 0.179020 TCACCTGCCAACCACTTCTG 60.179 55.0 0.0 0.0 0.00 3.02 R
3006 3099 0.250295 ATACGCACACCACTGCAACT 60.250 50.0 0.0 0.0 36.94 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.954092 CTTTTCAAGTTGGCTAGCCTAG 57.046 45.455 33.07 17.92 36.94 3.02
22 23 4.327680 CTTTTCAAGTTGGCTAGCCTAGT 58.672 43.478 33.07 25.74 36.94 2.57
23 24 5.488341 CTTTTCAAGTTGGCTAGCCTAGTA 58.512 41.667 33.07 11.61 36.94 1.82
24 25 5.693769 TTTCAAGTTGGCTAGCCTAGTAT 57.306 39.130 33.07 16.25 36.94 2.12
25 26 6.801718 TTTCAAGTTGGCTAGCCTAGTATA 57.198 37.500 33.07 17.14 36.94 1.47
26 27 5.786264 TCAAGTTGGCTAGCCTAGTATAC 57.214 43.478 33.07 19.59 36.94 1.47
27 28 5.455872 TCAAGTTGGCTAGCCTAGTATACT 58.544 41.667 33.07 21.21 36.94 2.12
28 29 5.897824 TCAAGTTGGCTAGCCTAGTATACTT 59.102 40.000 33.07 24.71 36.94 2.24
29 30 6.383147 TCAAGTTGGCTAGCCTAGTATACTTT 59.617 38.462 33.07 10.72 36.94 2.66
30 31 6.163135 AGTTGGCTAGCCTAGTATACTTTG 57.837 41.667 33.07 3.91 36.94 2.77
31 32 5.661759 AGTTGGCTAGCCTAGTATACTTTGT 59.338 40.000 33.07 4.78 36.94 2.83
32 33 5.531122 TGGCTAGCCTAGTATACTTTGTG 57.469 43.478 33.07 0.00 36.94 3.33
33 34 5.205821 TGGCTAGCCTAGTATACTTTGTGA 58.794 41.667 33.07 5.21 36.94 3.58
34 35 5.659525 TGGCTAGCCTAGTATACTTTGTGAA 59.340 40.000 33.07 4.80 36.94 3.18
35 36 6.326583 TGGCTAGCCTAGTATACTTTGTGAAT 59.673 38.462 33.07 0.00 36.94 2.57
36 37 7.507956 TGGCTAGCCTAGTATACTTTGTGAATA 59.492 37.037 33.07 4.08 36.94 1.75
37 38 8.532819 GGCTAGCCTAGTATACTTTGTGAATAT 58.467 37.037 27.17 0.00 0.00 1.28
38 39 9.930693 GCTAGCCTAGTATACTTTGTGAATATT 57.069 33.333 11.40 0.00 0.00 1.28
40 41 8.608844 AGCCTAGTATACTTTGTGAATATTGC 57.391 34.615 11.40 1.87 0.00 3.56
41 42 8.210946 AGCCTAGTATACTTTGTGAATATTGCA 58.789 33.333 11.40 0.00 0.00 4.08
42 43 9.003658 GCCTAGTATACTTTGTGAATATTGCAT 57.996 33.333 11.40 0.00 0.00 3.96
45 46 7.651808 AGTATACTTTGTGAATATTGCATGGC 58.348 34.615 0.00 0.00 0.00 4.40
46 47 3.772932 ACTTTGTGAATATTGCATGGCG 58.227 40.909 0.00 0.00 0.00 5.69
47 48 3.443329 ACTTTGTGAATATTGCATGGCGA 59.557 39.130 0.00 0.00 0.00 5.54
48 49 4.098349 ACTTTGTGAATATTGCATGGCGAT 59.902 37.500 0.00 0.00 36.52 4.58
49 50 4.652421 TTGTGAATATTGCATGGCGATT 57.348 36.364 0.00 0.00 34.19 3.34
50 51 4.652421 TGTGAATATTGCATGGCGATTT 57.348 36.364 0.00 0.00 34.19 2.17
51 52 4.609947 TGTGAATATTGCATGGCGATTTC 58.390 39.130 0.00 2.48 34.19 2.17
52 53 4.338964 TGTGAATATTGCATGGCGATTTCT 59.661 37.500 0.00 0.00 34.19 2.52
53 54 5.163530 TGTGAATATTGCATGGCGATTTCTT 60.164 36.000 0.00 0.00 34.19 2.52
54 55 5.400485 GTGAATATTGCATGGCGATTTCTTC 59.600 40.000 0.00 0.29 34.19 2.87
55 56 5.300034 TGAATATTGCATGGCGATTTCTTCT 59.700 36.000 0.00 0.00 34.19 2.85
56 57 6.486320 TGAATATTGCATGGCGATTTCTTCTA 59.514 34.615 0.00 0.00 34.19 2.10
57 58 4.825546 ATTGCATGGCGATTTCTTCTAG 57.174 40.909 0.00 0.00 0.00 2.43
58 59 1.942657 TGCATGGCGATTTCTTCTAGC 59.057 47.619 0.00 0.00 0.00 3.42
59 60 1.942657 GCATGGCGATTTCTTCTAGCA 59.057 47.619 0.00 0.00 0.00 3.49
60 61 2.286654 GCATGGCGATTTCTTCTAGCAC 60.287 50.000 0.00 0.00 0.00 4.40
61 62 1.640428 TGGCGATTTCTTCTAGCACG 58.360 50.000 0.00 0.00 0.00 5.34
62 63 1.067142 TGGCGATTTCTTCTAGCACGT 60.067 47.619 0.00 0.00 0.00 4.49
63 64 2.000447 GGCGATTTCTTCTAGCACGTT 59.000 47.619 0.00 0.00 0.00 3.99
64 65 3.184541 GGCGATTTCTTCTAGCACGTTA 58.815 45.455 0.00 0.00 0.00 3.18
65 66 3.615496 GGCGATTTCTTCTAGCACGTTAA 59.385 43.478 0.00 0.00 0.00 2.01
66 67 4.259850 GGCGATTTCTTCTAGCACGTTAAG 60.260 45.833 0.00 0.00 0.00 1.85
67 68 4.779392 GCGATTTCTTCTAGCACGTTAAGC 60.779 45.833 0.00 0.00 0.00 3.09
68 69 4.326278 CGATTTCTTCTAGCACGTTAAGCA 59.674 41.667 0.00 0.00 0.00 3.91
69 70 4.985044 TTTCTTCTAGCACGTTAAGCAC 57.015 40.909 0.00 0.00 0.00 4.40
70 71 3.653539 TCTTCTAGCACGTTAAGCACA 57.346 42.857 0.00 0.00 0.00 4.57
71 72 3.985008 TCTTCTAGCACGTTAAGCACAA 58.015 40.909 0.00 0.00 0.00 3.33
72 73 4.566004 TCTTCTAGCACGTTAAGCACAAT 58.434 39.130 0.00 0.00 0.00 2.71
73 74 5.716094 TCTTCTAGCACGTTAAGCACAATA 58.284 37.500 0.00 0.00 0.00 1.90
74 75 6.160684 TCTTCTAGCACGTTAAGCACAATAA 58.839 36.000 0.00 0.00 0.00 1.40
75 76 6.647481 TCTTCTAGCACGTTAAGCACAATAAA 59.353 34.615 0.00 0.00 0.00 1.40
76 77 6.788684 TCTAGCACGTTAAGCACAATAAAA 57.211 33.333 0.00 0.00 0.00 1.52
77 78 7.192148 TCTAGCACGTTAAGCACAATAAAAA 57.808 32.000 0.00 0.00 0.00 1.94
78 79 7.812648 TCTAGCACGTTAAGCACAATAAAAAT 58.187 30.769 0.00 0.00 0.00 1.82
79 80 8.293867 TCTAGCACGTTAAGCACAATAAAAATT 58.706 29.630 0.00 0.00 0.00 1.82
80 81 7.707774 AGCACGTTAAGCACAATAAAAATTT 57.292 28.000 0.00 0.00 0.00 1.82
81 82 7.783209 AGCACGTTAAGCACAATAAAAATTTC 58.217 30.769 0.00 0.00 0.00 2.17
82 83 7.651704 AGCACGTTAAGCACAATAAAAATTTCT 59.348 29.630 0.00 0.00 0.00 2.52
83 84 8.272866 GCACGTTAAGCACAATAAAAATTTCTT 58.727 29.630 0.00 0.00 0.00 2.52
84 85 9.777843 CACGTTAAGCACAATAAAAATTTCTTC 57.222 29.630 0.00 0.00 0.00 2.87
85 86 9.744468 ACGTTAAGCACAATAAAAATTTCTTCT 57.256 25.926 0.00 0.00 0.00 2.85
100 101 2.588027 CTTCTAGAAGAAGGACGGGC 57.412 55.000 25.55 0.00 46.03 6.13
101 102 2.104170 CTTCTAGAAGAAGGACGGGCT 58.896 52.381 25.55 0.00 46.03 5.19
102 103 2.233305 TCTAGAAGAAGGACGGGCTT 57.767 50.000 0.00 0.00 0.00 4.35
103 104 2.100989 TCTAGAAGAAGGACGGGCTTC 58.899 52.381 0.00 0.00 38.58 3.86
104 105 3.074788 AGAAGAAGGACGGGCTTCT 57.925 52.632 0.00 0.00 42.45 2.85
105 106 7.077042 CTTCTAGAAGAAGGACGGGCTTCTT 62.077 48.000 25.55 0.00 46.03 2.52
106 107 2.537143 AGAAGAAGGACGGGCTTCTTA 58.463 47.619 0.00 0.00 46.20 2.10
107 108 2.904434 AGAAGAAGGACGGGCTTCTTAA 59.096 45.455 0.00 0.00 46.20 1.85
108 109 3.519913 AGAAGAAGGACGGGCTTCTTAAT 59.480 43.478 0.00 0.00 46.20 1.40
109 110 4.019231 AGAAGAAGGACGGGCTTCTTAATT 60.019 41.667 0.00 0.00 46.20 1.40
110 111 4.302559 AGAAGGACGGGCTTCTTAATTT 57.697 40.909 0.00 0.00 36.63 1.82
111 112 4.010349 AGAAGGACGGGCTTCTTAATTTG 58.990 43.478 0.00 0.00 36.63 2.32
112 113 3.434940 AGGACGGGCTTCTTAATTTGT 57.565 42.857 0.00 0.00 0.00 2.83
113 114 3.081804 AGGACGGGCTTCTTAATTTGTG 58.918 45.455 0.00 0.00 0.00 3.33
114 115 2.163613 GGACGGGCTTCTTAATTTGTGG 59.836 50.000 0.00 0.00 0.00 4.17
115 116 2.163613 GACGGGCTTCTTAATTTGTGGG 59.836 50.000 0.00 0.00 0.00 4.61
116 117 1.476488 CGGGCTTCTTAATTTGTGGGG 59.524 52.381 0.00 0.00 0.00 4.96
117 118 2.815158 GGGCTTCTTAATTTGTGGGGA 58.185 47.619 0.00 0.00 0.00 4.81
118 119 2.496070 GGGCTTCTTAATTTGTGGGGAC 59.504 50.000 0.00 0.00 0.00 4.46
119 120 3.161866 GGCTTCTTAATTTGTGGGGACA 58.838 45.455 0.00 0.00 38.70 4.02
134 135 5.715434 TGGGGACACTTTATTTTAGTTGC 57.285 39.130 0.00 0.00 33.40 4.17
135 136 4.525100 TGGGGACACTTTATTTTAGTTGCC 59.475 41.667 0.00 0.00 33.40 4.52
136 137 4.525100 GGGGACACTTTATTTTAGTTGCCA 59.475 41.667 0.00 0.00 0.00 4.92
137 138 5.466819 GGGACACTTTATTTTAGTTGCCAC 58.533 41.667 0.00 0.00 0.00 5.01
138 139 5.243060 GGGACACTTTATTTTAGTTGCCACT 59.757 40.000 0.00 0.00 36.99 4.00
139 140 6.379386 GGACACTTTATTTTAGTTGCCACTC 58.621 40.000 0.00 0.00 34.06 3.51
140 141 6.016610 GGACACTTTATTTTAGTTGCCACTCA 60.017 38.462 0.00 0.00 34.06 3.41
141 142 7.309194 GGACACTTTATTTTAGTTGCCACTCAT 60.309 37.037 0.00 0.00 34.06 2.90
142 143 7.951591 ACACTTTATTTTAGTTGCCACTCATT 58.048 30.769 0.00 0.00 34.06 2.57
143 144 7.867403 ACACTTTATTTTAGTTGCCACTCATTG 59.133 33.333 0.00 0.00 34.06 2.82
144 145 7.867403 CACTTTATTTTAGTTGCCACTCATTGT 59.133 33.333 0.00 0.00 34.06 2.71
145 146 8.421002 ACTTTATTTTAGTTGCCACTCATTGTT 58.579 29.630 0.00 0.00 34.06 2.83
146 147 9.260002 CTTTATTTTAGTTGCCACTCATTGTTT 57.740 29.630 0.00 0.00 34.06 2.83
147 148 8.810652 TTATTTTAGTTGCCACTCATTGTTTC 57.189 30.769 0.00 0.00 34.06 2.78
148 149 4.846779 TTAGTTGCCACTCATTGTTTCC 57.153 40.909 0.00 0.00 34.06 3.13
149 150 1.963515 AGTTGCCACTCATTGTTTCCC 59.036 47.619 0.00 0.00 0.00 3.97
150 151 1.963515 GTTGCCACTCATTGTTTCCCT 59.036 47.619 0.00 0.00 0.00 4.20
151 152 2.365293 GTTGCCACTCATTGTTTCCCTT 59.635 45.455 0.00 0.00 0.00 3.95
152 153 1.962807 TGCCACTCATTGTTTCCCTTG 59.037 47.619 0.00 0.00 0.00 3.61
153 154 1.273327 GCCACTCATTGTTTCCCTTGG 59.727 52.381 0.00 0.00 0.00 3.61
154 155 2.875296 CCACTCATTGTTTCCCTTGGA 58.125 47.619 0.00 0.00 0.00 3.53
155 156 3.434309 CCACTCATTGTTTCCCTTGGAT 58.566 45.455 0.00 0.00 0.00 3.41
156 157 3.834231 CCACTCATTGTTTCCCTTGGATT 59.166 43.478 0.00 0.00 0.00 3.01
157 158 4.082026 CCACTCATTGTTTCCCTTGGATTC 60.082 45.833 0.00 0.00 0.00 2.52
158 159 4.523943 CACTCATTGTTTCCCTTGGATTCA 59.476 41.667 0.00 0.00 0.00 2.57
159 160 4.524328 ACTCATTGTTTCCCTTGGATTCAC 59.476 41.667 0.00 0.00 0.00 3.18
160 161 4.478203 TCATTGTTTCCCTTGGATTCACA 58.522 39.130 0.00 0.00 0.00 3.58
161 162 4.898265 TCATTGTTTCCCTTGGATTCACAA 59.102 37.500 5.85 5.85 33.82 3.33
162 163 5.365025 TCATTGTTTCCCTTGGATTCACAAA 59.635 36.000 6.97 0.00 33.37 2.83
163 164 5.885449 TTGTTTCCCTTGGATTCACAAAT 57.115 34.783 0.00 0.00 29.47 2.32
164 165 6.985653 TTGTTTCCCTTGGATTCACAAATA 57.014 33.333 0.00 0.00 29.47 1.40
165 166 6.985653 TGTTTCCCTTGGATTCACAAATAA 57.014 33.333 0.00 0.00 0.00 1.40
166 167 6.754193 TGTTTCCCTTGGATTCACAAATAAC 58.246 36.000 0.00 0.00 0.00 1.89
167 168 5.993748 TTCCCTTGGATTCACAAATAACC 57.006 39.130 0.00 0.00 0.00 2.85
168 169 5.269554 TCCCTTGGATTCACAAATAACCT 57.730 39.130 0.00 0.00 0.00 3.50
169 170 5.650283 TCCCTTGGATTCACAAATAACCTT 58.350 37.500 0.00 0.00 0.00 3.50
170 171 6.795590 TCCCTTGGATTCACAAATAACCTTA 58.204 36.000 0.00 0.00 0.00 2.69
171 172 7.242359 TCCCTTGGATTCACAAATAACCTTAA 58.758 34.615 0.00 0.00 0.00 1.85
172 173 7.898636 TCCCTTGGATTCACAAATAACCTTAAT 59.101 33.333 0.00 0.00 0.00 1.40
173 174 8.539544 CCCTTGGATTCACAAATAACCTTAATT 58.460 33.333 0.00 0.00 0.00 1.40
207 208 8.185003 TCACAGAATCATAGTTGTTGATAACG 57.815 34.615 0.00 0.00 33.52 3.18
208 209 6.901887 CACAGAATCATAGTTGTTGATAACGC 59.098 38.462 0.00 0.00 33.52 4.84
209 210 6.818644 ACAGAATCATAGTTGTTGATAACGCT 59.181 34.615 0.00 0.00 33.52 5.07
210 211 7.010552 ACAGAATCATAGTTGTTGATAACGCTC 59.989 37.037 0.00 0.00 33.52 5.03
211 212 5.890110 ATCATAGTTGTTGATAACGCTCG 57.110 39.130 0.00 0.00 35.73 5.03
212 213 4.740268 TCATAGTTGTTGATAACGCTCGT 58.260 39.130 0.00 0.00 35.73 4.18
213 214 5.165676 TCATAGTTGTTGATAACGCTCGTT 58.834 37.500 12.43 12.43 41.65 3.85
214 215 6.324042 TCATAGTTGTTGATAACGCTCGTTA 58.676 36.000 15.85 15.85 43.56 3.18
215 216 6.471198 TCATAGTTGTTGATAACGCTCGTTAG 59.529 38.462 17.94 3.17 42.82 2.34
216 217 4.553323 AGTTGTTGATAACGCTCGTTAGT 58.447 39.130 17.94 8.34 42.82 2.24
217 218 4.384846 AGTTGTTGATAACGCTCGTTAGTG 59.615 41.667 17.94 0.00 42.82 2.74
218 219 3.247442 TGTTGATAACGCTCGTTAGTGG 58.753 45.455 17.94 0.00 42.82 4.00
219 220 3.248266 GTTGATAACGCTCGTTAGTGGT 58.752 45.455 17.94 3.86 42.82 4.16
220 221 3.581024 TGATAACGCTCGTTAGTGGTT 57.419 42.857 17.94 3.53 42.82 3.67
221 222 3.247442 TGATAACGCTCGTTAGTGGTTG 58.753 45.455 17.94 0.00 42.82 3.77
222 223 2.798976 TAACGCTCGTTAGTGGTTGT 57.201 45.000 10.41 0.00 39.31 3.32
223 224 2.798976 AACGCTCGTTAGTGGTTGTA 57.201 45.000 5.81 0.00 37.56 2.41
224 225 3.308438 AACGCTCGTTAGTGGTTGTAT 57.692 42.857 5.81 0.00 37.56 2.29
225 226 4.439305 AACGCTCGTTAGTGGTTGTATA 57.561 40.909 5.81 0.00 37.56 1.47
226 227 3.762779 ACGCTCGTTAGTGGTTGTATAC 58.237 45.455 0.00 0.00 37.56 1.47
227 228 3.441572 ACGCTCGTTAGTGGTTGTATACT 59.558 43.478 4.17 0.00 37.56 2.12
228 229 4.635765 ACGCTCGTTAGTGGTTGTATACTA 59.364 41.667 4.17 0.00 37.56 1.82
229 230 5.203370 CGCTCGTTAGTGGTTGTATACTAG 58.797 45.833 4.17 0.00 31.62 2.57
230 231 4.974888 GCTCGTTAGTGGTTGTATACTAGC 59.025 45.833 9.21 9.21 31.62 3.42
231 232 5.505173 TCGTTAGTGGTTGTATACTAGCC 57.495 43.478 12.81 8.51 31.62 3.93
232 233 5.195940 TCGTTAGTGGTTGTATACTAGCCT 58.804 41.667 12.81 11.46 31.62 4.58
233 234 5.297776 TCGTTAGTGGTTGTATACTAGCCTC 59.702 44.000 12.81 8.71 31.62 4.70
234 235 5.506982 CGTTAGTGGTTGTATACTAGCCTCC 60.507 48.000 12.81 0.41 31.62 4.30
235 236 3.306613 AGTGGTTGTATACTAGCCTCCC 58.693 50.000 12.81 0.08 0.00 4.30
236 237 3.036091 GTGGTTGTATACTAGCCTCCCA 58.964 50.000 12.81 2.50 0.00 4.37
237 238 3.453353 GTGGTTGTATACTAGCCTCCCAA 59.547 47.826 12.81 0.00 0.00 4.12
238 239 4.080751 GTGGTTGTATACTAGCCTCCCAAA 60.081 45.833 12.81 0.00 0.00 3.28
239 240 4.163458 TGGTTGTATACTAGCCTCCCAAAG 59.837 45.833 12.81 0.00 0.00 2.77
240 241 4.163649 GGTTGTATACTAGCCTCCCAAAGT 59.836 45.833 4.17 0.00 0.00 2.66
241 242 5.358090 GTTGTATACTAGCCTCCCAAAGTC 58.642 45.833 4.17 0.00 0.00 3.01
242 243 3.635373 TGTATACTAGCCTCCCAAAGTCG 59.365 47.826 4.17 0.00 0.00 4.18
243 244 2.519771 TACTAGCCTCCCAAAGTCGA 57.480 50.000 0.00 0.00 0.00 4.20
244 245 1.640917 ACTAGCCTCCCAAAGTCGAA 58.359 50.000 0.00 0.00 0.00 3.71
245 246 1.975680 ACTAGCCTCCCAAAGTCGAAA 59.024 47.619 0.00 0.00 0.00 3.46
246 247 2.572104 ACTAGCCTCCCAAAGTCGAAAT 59.428 45.455 0.00 0.00 0.00 2.17
247 248 2.115343 AGCCTCCCAAAGTCGAAATC 57.885 50.000 0.00 0.00 0.00 2.17
248 249 1.630878 AGCCTCCCAAAGTCGAAATCT 59.369 47.619 0.00 0.00 0.00 2.40
249 250 2.040412 AGCCTCCCAAAGTCGAAATCTT 59.960 45.455 0.00 0.00 0.00 2.40
250 251 2.162408 GCCTCCCAAAGTCGAAATCTTG 59.838 50.000 0.00 0.00 0.00 3.02
251 252 3.412386 CCTCCCAAAGTCGAAATCTTGT 58.588 45.455 0.00 0.00 0.00 3.16
252 253 3.821033 CCTCCCAAAGTCGAAATCTTGTT 59.179 43.478 0.00 0.00 0.00 2.83
253 254 4.320494 CCTCCCAAAGTCGAAATCTTGTTG 60.320 45.833 0.00 0.00 0.00 3.33
254 255 3.568007 TCCCAAAGTCGAAATCTTGTTGG 59.432 43.478 0.00 0.00 0.00 3.77
255 256 3.305335 CCCAAAGTCGAAATCTTGTTGGG 60.305 47.826 8.74 8.74 36.93 4.12
256 257 3.317993 CCAAAGTCGAAATCTTGTTGGGT 59.682 43.478 0.00 0.00 0.00 4.51
257 258 4.290155 CAAAGTCGAAATCTTGTTGGGTG 58.710 43.478 0.00 0.00 0.00 4.61
258 259 3.485463 AGTCGAAATCTTGTTGGGTGA 57.515 42.857 0.00 0.00 0.00 4.02
259 260 3.403038 AGTCGAAATCTTGTTGGGTGAG 58.597 45.455 0.00 0.00 0.00 3.51
260 261 2.484264 GTCGAAATCTTGTTGGGTGAGG 59.516 50.000 0.00 0.00 0.00 3.86
261 262 2.370519 TCGAAATCTTGTTGGGTGAGGA 59.629 45.455 0.00 0.00 0.00 3.71
262 263 3.009033 TCGAAATCTTGTTGGGTGAGGAT 59.991 43.478 0.00 0.00 0.00 3.24
263 264 3.375299 CGAAATCTTGTTGGGTGAGGATC 59.625 47.826 0.00 0.00 0.00 3.36
264 265 4.593956 GAAATCTTGTTGGGTGAGGATCT 58.406 43.478 0.00 0.00 34.92 2.75
265 266 3.922171 ATCTTGTTGGGTGAGGATCTC 57.078 47.619 0.00 0.00 34.92 2.75
281 282 6.821616 AGGATCTCCTAAAGTGAACATGAT 57.178 37.500 0.00 0.00 46.48 2.45
282 283 6.590068 AGGATCTCCTAAAGTGAACATGATG 58.410 40.000 0.00 0.00 46.48 3.07
283 284 5.762218 GGATCTCCTAAAGTGAACATGATGG 59.238 44.000 0.00 0.00 0.00 3.51
284 285 4.517285 TCTCCTAAAGTGAACATGATGGC 58.483 43.478 0.00 0.00 0.00 4.40
285 286 4.225942 TCTCCTAAAGTGAACATGATGGCT 59.774 41.667 0.00 0.00 0.00 4.75
286 287 4.517285 TCCTAAAGTGAACATGATGGCTC 58.483 43.478 0.00 0.00 0.00 4.70
287 288 3.629398 CCTAAAGTGAACATGATGGCTCC 59.371 47.826 0.00 0.00 0.00 4.70
288 289 3.446442 AAAGTGAACATGATGGCTCCT 57.554 42.857 0.00 0.00 0.00 3.69
289 290 4.574674 AAAGTGAACATGATGGCTCCTA 57.425 40.909 0.00 0.00 0.00 2.94
290 291 4.785346 AAGTGAACATGATGGCTCCTAT 57.215 40.909 0.00 0.00 0.00 2.57
291 292 4.785346 AGTGAACATGATGGCTCCTATT 57.215 40.909 0.00 0.00 0.00 1.73
292 293 5.894298 AGTGAACATGATGGCTCCTATTA 57.106 39.130 0.00 0.00 0.00 0.98
293 294 5.862845 AGTGAACATGATGGCTCCTATTAG 58.137 41.667 0.00 0.00 0.00 1.73
294 295 5.367937 AGTGAACATGATGGCTCCTATTAGT 59.632 40.000 0.00 0.00 0.00 2.24
295 296 6.058183 GTGAACATGATGGCTCCTATTAGTT 58.942 40.000 0.00 0.00 0.00 2.24
296 297 6.017605 GTGAACATGATGGCTCCTATTAGTTG 60.018 42.308 0.00 0.00 0.00 3.16
297 298 5.894298 ACATGATGGCTCCTATTAGTTGA 57.106 39.130 0.00 0.00 0.00 3.18
298 299 6.252599 ACATGATGGCTCCTATTAGTTGAA 57.747 37.500 0.00 0.00 0.00 2.69
299 300 6.294473 ACATGATGGCTCCTATTAGTTGAAG 58.706 40.000 0.00 0.00 0.00 3.02
300 301 5.957771 TGATGGCTCCTATTAGTTGAAGT 57.042 39.130 0.00 0.00 0.00 3.01
301 302 7.071196 ACATGATGGCTCCTATTAGTTGAAGTA 59.929 37.037 0.00 0.00 0.00 2.24
302 303 7.618019 TGATGGCTCCTATTAGTTGAAGTAT 57.382 36.000 0.00 0.00 0.00 2.12
303 304 8.034313 TGATGGCTCCTATTAGTTGAAGTATT 57.966 34.615 0.00 0.00 0.00 1.89
304 305 8.494433 TGATGGCTCCTATTAGTTGAAGTATTT 58.506 33.333 0.00 0.00 0.00 1.40
305 306 9.343539 GATGGCTCCTATTAGTTGAAGTATTTT 57.656 33.333 0.00 0.00 0.00 1.82
349 350 8.899427 TGATTTCTCCTCATGATTCTTATGAC 57.101 34.615 0.00 0.00 31.66 3.06
350 351 8.488668 TGATTTCTCCTCATGATTCTTATGACA 58.511 33.333 0.00 0.00 31.66 3.58
351 352 9.504708 GATTTCTCCTCATGATTCTTATGACAT 57.495 33.333 0.00 0.00 31.66 3.06
352 353 8.672823 TTTCTCCTCATGATTCTTATGACATG 57.327 34.615 0.00 0.00 40.65 3.21
353 354 7.607615 TCTCCTCATGATTCTTATGACATGA 57.392 36.000 0.00 0.00 44.05 3.07
354 355 8.203681 TCTCCTCATGATTCTTATGACATGAT 57.796 34.615 0.00 0.00 44.76 2.45
355 356 9.317827 TCTCCTCATGATTCTTATGACATGATA 57.682 33.333 0.00 0.00 44.76 2.15
356 357 9.589111 CTCCTCATGATTCTTATGACATGATAG 57.411 37.037 0.00 0.00 44.76 2.08
375 376 9.941664 CATGATAGGCTTAATTAAACAACTCTG 57.058 33.333 0.00 0.00 0.00 3.35
470 481 5.423015 ACTGTCACATTAGCCAACTATCTG 58.577 41.667 0.00 0.00 0.00 2.90
472 483 6.126940 ACTGTCACATTAGCCAACTATCTGAT 60.127 38.462 0.00 0.00 0.00 2.90
524 536 7.174599 AGCATGTATATCAGATTTGCTTCCTTC 59.825 37.037 0.00 0.00 35.85 3.46
564 577 8.152309 TCAAATTTCAACATTTGGGTCATTTC 57.848 30.769 6.36 0.00 42.28 2.17
570 583 4.525912 ACATTTGGGTCATTTCAAGCTC 57.474 40.909 0.00 0.00 0.00 4.09
577 590 3.760684 GGGTCATTTCAAGCTCAGATGTT 59.239 43.478 0.00 0.00 0.00 2.71
605 621 0.309922 GAAGCGGATCATGCATGGTG 59.690 55.000 25.97 9.83 33.85 4.17
613 629 1.766494 TCATGCATGGTGGGTCATTC 58.234 50.000 25.97 0.00 0.00 2.67
614 630 1.005687 TCATGCATGGTGGGTCATTCA 59.994 47.619 25.97 0.00 0.00 2.57
618 634 2.017049 GCATGGTGGGTCATTCAGTAC 58.983 52.381 0.00 0.00 0.00 2.73
627 643 3.689649 GGGTCATTCAGTACAATGTCACC 59.310 47.826 0.00 2.44 35.56 4.02
634 650 1.897133 AGTACAATGTCACCCGTGCTA 59.103 47.619 0.00 0.00 0.00 3.49
637 653 1.897133 ACAATGTCACCCGTGCTAGTA 59.103 47.619 0.00 0.00 0.00 1.82
640 656 1.913778 TGTCACCCGTGCTAGTAAGA 58.086 50.000 0.00 0.00 0.00 2.10
646 662 6.492429 TGTCACCCGTGCTAGTAAGATAATAT 59.508 38.462 0.00 0.00 0.00 1.28
678 694 1.155889 CGCAGTGGACTATTGCACAA 58.844 50.000 7.45 0.00 46.22 3.33
746 769 5.411053 ACTGTTTTGTTTGATTGTTTGGGTG 59.589 36.000 0.00 0.00 0.00 4.61
752 802 4.119136 GTTTGATTGTTTGGGTGGAGTTG 58.881 43.478 0.00 0.00 0.00 3.16
762 812 3.743132 TGGGTGGAGTTGGATAGGTTAT 58.257 45.455 0.00 0.00 0.00 1.89
793 843 9.819267 AACTAATAAGAGTTTAGGAGGATTTCG 57.181 33.333 0.00 0.00 36.19 3.46
806 858 7.290110 AGGAGGATTTCGTGAAAATTTTCTT 57.710 32.000 26.73 8.88 37.70 2.52
871 941 1.697432 TGGCAAGTGCTTGGTACTAGT 59.303 47.619 13.07 0.00 40.74 2.57
874 944 3.522553 GCAAGTGCTTGGTACTAGTAGG 58.477 50.000 13.07 0.00 40.74 3.18
877 947 5.068723 GCAAGTGCTTGGTACTAGTAGGATA 59.931 44.000 13.07 0.00 40.74 2.59
879 949 6.732418 CAAGTGCTTGGTACTAGTAGGATACG 60.732 46.154 1.87 0.00 40.70 3.06
925 1002 3.951306 TCACTTCATTTTGCAGTGTTCG 58.049 40.909 7.08 0.00 41.34 3.95
929 1006 2.980586 TCATTTTGCAGTGTTCGTTCG 58.019 42.857 0.00 0.00 0.00 3.95
966 1043 6.485648 GGAAAATATACAACTAGGCGACCAAT 59.514 38.462 0.00 0.00 0.00 3.16
1083 1161 1.102809 CAGACCAGGCAAGCACACAA 61.103 55.000 0.00 0.00 0.00 3.33
1200 1278 3.810941 TGGACATACGAAACCTCAACAAC 59.189 43.478 0.00 0.00 0.00 3.32
1201 1279 3.810941 GGACATACGAAACCTCAACAACA 59.189 43.478 0.00 0.00 0.00 3.33
1206 1284 2.676342 ACGAAACCTCAACAACACAGTC 59.324 45.455 0.00 0.00 0.00 3.51
1219 1297 1.480137 ACACAGTCTATGAGAGCTGGC 59.520 52.381 0.00 0.00 31.88 4.85
1294 1372 5.580998 ACTTGTATCTAGTTGGTCAGGAGA 58.419 41.667 0.00 0.00 0.00 3.71
1350 1428 4.323257 GGGTTCCGAAAACCAAGATCTCTA 60.323 45.833 17.86 0.00 42.33 2.43
1372 1450 5.416271 ACTTTCTTTGAACCGGATAGCTA 57.584 39.130 9.46 0.00 0.00 3.32
1386 1464 4.314121 GGATAGCTATCAAGGTGAAGCAG 58.686 47.826 30.03 0.36 34.92 4.24
1393 1471 4.686191 ATCAAGGTGAAGCAGATAGAGG 57.314 45.455 0.00 0.00 0.00 3.69
1465 1546 4.835615 ACAATGGGGATACTAGTAGCTCAG 59.164 45.833 19.27 8.53 0.00 3.35
1476 1557 8.754991 ATACTAGTAGCTCAGACTACATTGTT 57.245 34.615 8.85 0.00 44.14 2.83
1497 1578 1.698506 AGAGGTCCCAAGATCTAGCG 58.301 55.000 0.00 0.00 31.88 4.26
1517 1598 2.661594 GAACATTTCACGTTCCCTTGC 58.338 47.619 0.00 0.00 37.40 4.01
1536 1620 1.414550 GCTGAAGATCTAGTGGGGGTC 59.585 57.143 0.00 0.00 0.00 4.46
1548 1632 0.544357 TGGGGGTCGATGAGAACAGT 60.544 55.000 0.00 0.00 38.65 3.55
1558 1642 4.745125 TCGATGAGAACAGTGAAACACTTC 59.255 41.667 0.00 0.00 42.59 3.01
1579 1663 1.168714 GAAGTGGTTGGCAGGTGATC 58.831 55.000 0.00 0.00 0.00 2.92
1721 1805 9.248291 CATCTCTCAAACTTATTCTAGAGAAGC 57.752 37.037 13.67 0.00 38.30 3.86
1798 1885 1.480954 ACACTACGGACATGGACATCC 59.519 52.381 0.00 0.00 0.00 3.51
1854 1941 9.480053 CTGGAACAACAAAAGTATTTGATCATT 57.520 29.630 8.18 0.00 46.96 2.57
1855 1942 9.474920 TGGAACAACAAAAGTATTTGATCATTC 57.525 29.630 8.18 6.21 46.96 2.67
1875 1962 3.184628 TCTGGATGATGTTTGGACTCCT 58.815 45.455 0.00 0.00 0.00 3.69
1899 1986 7.646922 CCTGAAGCATTTAATGATTTGTCTAGC 59.353 37.037 9.84 0.00 39.27 3.42
1923 2010 6.094048 GCGTGCTTATTCATAATGATATGGGT 59.906 38.462 0.00 0.00 39.54 4.51
1927 2014 9.890629 TGCTTATTCATAATGATATGGGTAGTC 57.109 33.333 0.00 0.00 39.54 2.59
1951 2038 4.798882 ACTGGTAATCACAACAAGGGAAA 58.201 39.130 0.00 0.00 29.94 3.13
1996 2083 6.341316 TCTCAAGGACATATCTTAACACTGC 58.659 40.000 0.00 0.00 0.00 4.40
1997 2084 5.428253 TCAAGGACATATCTTAACACTGCC 58.572 41.667 0.00 0.00 0.00 4.85
2007 2094 3.072476 TCTTAACACTGCCAGCTTTACCT 59.928 43.478 0.00 0.00 0.00 3.08
2031 2118 2.172293 AGACAAGGCATGGGATCTCTTC 59.828 50.000 0.00 0.00 0.00 2.87
2060 2147 5.942826 AGAAAGCCTTTCCAAGAGATACAAG 59.057 40.000 13.45 0.00 40.54 3.16
2087 2174 1.334160 TGTCCTACGGAGTTGAAGCA 58.666 50.000 0.00 0.00 37.78 3.91
2094 2181 1.531149 ACGGAGTTGAAGCATTTGTCG 59.469 47.619 0.00 0.00 37.78 4.35
2368 2455 5.239963 AGGAAACAACTTGTACGGTTATTGG 59.760 40.000 0.00 0.00 0.00 3.16
2415 2502 3.944087 GGGTGAAAGCACACTAGAAGAT 58.056 45.455 0.00 0.00 45.12 2.40
2471 2558 6.725246 ACAGAAACATGCTACAACTTGTTAC 58.275 36.000 0.00 0.00 37.04 2.50
2484 2571 5.124936 ACAACTTGTTACAAGGAACCACTTC 59.875 40.000 26.09 0.00 0.00 3.01
2545 2633 3.069872 TGAATTGGCAGTTGATTTGTGCT 59.930 39.130 0.00 0.00 37.37 4.40
2566 2654 5.163663 TGCTAGAAGAACTGTTTTGGTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
2587 2676 7.645340 GTGTTGCATATGAGAATAAATGTGGAC 59.355 37.037 6.97 0.00 0.00 4.02
2616 2705 3.284617 TCAGAAGGATGGACGTCGATTA 58.715 45.455 14.57 0.00 0.00 1.75
2648 2737 8.981647 GCACAAACAAAAAGATGATATTCAACT 58.018 29.630 0.00 0.00 30.32 3.16
2670 2759 2.825532 ACCAGTTTCCAATATGCACCAC 59.174 45.455 0.00 0.00 0.00 4.16
2691 2780 4.441415 CACCTTCGAACTATCATTACGCTC 59.559 45.833 0.00 0.00 0.00 5.03
2718 2807 6.018913 GTGATAGCAAGTCATCATTCACTCTG 60.019 42.308 0.00 0.00 33.92 3.35
2873 2966 3.274288 GCTCCCGAAGACAATTGAGAAT 58.726 45.455 13.59 0.00 0.00 2.40
2961 3054 2.481289 ACTGAAGAAGCTTAGGCACC 57.519 50.000 0.00 0.00 41.70 5.01
2990 3083 6.441274 TGCTCAGAAAACAATTGATTCAGAC 58.559 36.000 21.90 16.03 0.00 3.51
3000 3093 3.883830 TTGATTCAGACTGGAGAGAGC 57.116 47.619 1.81 0.00 0.00 4.09
3004 3097 0.894141 TCAGACTGGAGAGAGCTTGC 59.106 55.000 1.81 0.00 0.00 4.01
3006 3099 1.001746 CAGACTGGAGAGAGCTTGCAA 59.998 52.381 0.00 0.00 0.00 4.08
3120 3214 0.620556 TTTAGGGGAGCTGAGGCAAG 59.379 55.000 0.00 0.00 41.70 4.01
3165 3259 8.593679 TGAATGTGAAAGGAATCTACTGTAGAA 58.406 33.333 20.40 5.66 38.50 2.10
3186 3280 9.820725 GTAGAAGTATCAGTGAGTCTCTAGTTA 57.179 37.037 0.00 0.00 0.00 2.24
3212 3306 6.611642 AGATGCAGTATTTGTCCTACCTAGAA 59.388 38.462 0.00 0.00 0.00 2.10
3257 3352 5.053978 AGGTTCTCTTGTTGAATGTCCTT 57.946 39.130 0.00 0.00 0.00 3.36
3326 3421 1.735386 CGTTGGACGAGTCTCCTCTA 58.265 55.000 3.09 0.00 46.05 2.43
3338 3433 4.873010 AGTCTCCTCTATTCCAAGCTGTA 58.127 43.478 0.00 0.00 0.00 2.74
3340 3435 4.890581 GTCTCCTCTATTCCAAGCTGTAGA 59.109 45.833 0.00 0.00 0.00 2.59
3513 3608 4.142182 CCAAGCTGAAGGTTCTCTCTCTAG 60.142 50.000 0.00 0.00 32.86 2.43
3523 3618 4.270008 GTTCTCTCTCTAGGAGACTTGCT 58.730 47.826 6.79 0.00 45.20 3.91
3526 3621 5.680619 TCTCTCTCTAGGAGACTTGCTTAG 58.319 45.833 6.79 0.00 45.20 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.327680 ACTAGGCTAGCCAACTTGAAAAG 58.672 43.478 34.70 17.78 44.39 2.27
1 2 4.367039 ACTAGGCTAGCCAACTTGAAAA 57.633 40.909 34.70 7.88 38.92 2.29
4 5 5.455872 AGTATACTAGGCTAGCCAACTTGA 58.544 41.667 34.70 15.19 38.92 3.02
5 6 5.793030 AGTATACTAGGCTAGCCAACTTG 57.207 43.478 34.70 20.23 38.92 3.16
6 7 6.156429 ACAAAGTATACTAGGCTAGCCAACTT 59.844 38.462 34.70 25.66 38.92 2.66
7 8 5.661759 ACAAAGTATACTAGGCTAGCCAACT 59.338 40.000 34.70 22.10 38.92 3.16
8 9 5.753921 CACAAAGTATACTAGGCTAGCCAAC 59.246 44.000 34.70 20.43 38.92 3.77
9 10 5.659525 TCACAAAGTATACTAGGCTAGCCAA 59.340 40.000 34.70 17.49 38.92 4.52
10 11 5.205821 TCACAAAGTATACTAGGCTAGCCA 58.794 41.667 34.70 19.43 38.92 4.75
11 12 5.786264 TCACAAAGTATACTAGGCTAGCC 57.214 43.478 27.19 27.19 0.00 3.93
12 13 9.930693 AATATTCACAAAGTATACTAGGCTAGC 57.069 33.333 21.26 6.04 0.00 3.42
14 15 9.706691 GCAATATTCACAAAGTATACTAGGCTA 57.293 33.333 5.65 0.00 0.00 3.93
15 16 8.210946 TGCAATATTCACAAAGTATACTAGGCT 58.789 33.333 5.65 0.00 0.00 4.58
16 17 8.378172 TGCAATATTCACAAAGTATACTAGGC 57.622 34.615 5.65 0.00 0.00 3.93
19 20 8.783093 GCCATGCAATATTCACAAAGTATACTA 58.217 33.333 5.65 0.00 0.00 1.82
20 21 7.520453 CGCCATGCAATATTCACAAAGTATACT 60.520 37.037 0.00 0.00 0.00 2.12
21 22 6.578545 CGCCATGCAATATTCACAAAGTATAC 59.421 38.462 0.00 0.00 0.00 1.47
22 23 6.484977 TCGCCATGCAATATTCACAAAGTATA 59.515 34.615 0.00 0.00 0.00 1.47
23 24 5.299028 TCGCCATGCAATATTCACAAAGTAT 59.701 36.000 0.00 0.00 0.00 2.12
24 25 4.637977 TCGCCATGCAATATTCACAAAGTA 59.362 37.500 0.00 0.00 0.00 2.24
25 26 3.443329 TCGCCATGCAATATTCACAAAGT 59.557 39.130 0.00 0.00 0.00 2.66
26 27 4.031418 TCGCCATGCAATATTCACAAAG 57.969 40.909 0.00 0.00 0.00 2.77
27 28 4.652421 ATCGCCATGCAATATTCACAAA 57.348 36.364 0.00 0.00 0.00 2.83
28 29 4.652421 AATCGCCATGCAATATTCACAA 57.348 36.364 0.00 0.00 0.00 3.33
29 30 4.338964 AGAAATCGCCATGCAATATTCACA 59.661 37.500 0.00 0.00 0.00 3.58
30 31 4.863491 AGAAATCGCCATGCAATATTCAC 58.137 39.130 0.00 0.00 0.00 3.18
31 32 5.300034 AGAAGAAATCGCCATGCAATATTCA 59.700 36.000 0.00 0.00 0.00 2.57
32 33 5.766222 AGAAGAAATCGCCATGCAATATTC 58.234 37.500 0.00 0.00 0.00 1.75
33 34 5.779529 AGAAGAAATCGCCATGCAATATT 57.220 34.783 0.00 0.00 0.00 1.28
34 35 5.106396 GCTAGAAGAAATCGCCATGCAATAT 60.106 40.000 0.00 0.00 0.00 1.28
35 36 4.214119 GCTAGAAGAAATCGCCATGCAATA 59.786 41.667 0.00 0.00 0.00 1.90
36 37 3.004106 GCTAGAAGAAATCGCCATGCAAT 59.996 43.478 0.00 0.00 0.00 3.56
37 38 2.355756 GCTAGAAGAAATCGCCATGCAA 59.644 45.455 0.00 0.00 0.00 4.08
38 39 1.942657 GCTAGAAGAAATCGCCATGCA 59.057 47.619 0.00 0.00 0.00 3.96
39 40 1.942657 TGCTAGAAGAAATCGCCATGC 59.057 47.619 0.00 0.00 0.00 4.06
40 41 2.033407 CGTGCTAGAAGAAATCGCCATG 60.033 50.000 0.00 0.00 0.00 3.66
41 42 2.205074 CGTGCTAGAAGAAATCGCCAT 58.795 47.619 0.00 0.00 0.00 4.40
42 43 1.067142 ACGTGCTAGAAGAAATCGCCA 60.067 47.619 0.00 0.00 0.00 5.69
43 44 1.641577 ACGTGCTAGAAGAAATCGCC 58.358 50.000 0.00 0.00 0.00 5.54
44 45 4.779392 GCTTAACGTGCTAGAAGAAATCGC 60.779 45.833 0.00 0.00 0.00 4.58
45 46 4.326278 TGCTTAACGTGCTAGAAGAAATCG 59.674 41.667 0.00 0.00 0.00 3.34
46 47 5.120208 TGTGCTTAACGTGCTAGAAGAAATC 59.880 40.000 0.00 0.00 0.00 2.17
47 48 4.994852 TGTGCTTAACGTGCTAGAAGAAAT 59.005 37.500 0.00 0.00 0.00 2.17
48 49 4.373527 TGTGCTTAACGTGCTAGAAGAAA 58.626 39.130 0.00 0.00 0.00 2.52
49 50 3.985008 TGTGCTTAACGTGCTAGAAGAA 58.015 40.909 0.00 0.00 0.00 2.52
50 51 3.653539 TGTGCTTAACGTGCTAGAAGA 57.346 42.857 0.00 0.00 0.00 2.87
51 52 4.928661 ATTGTGCTTAACGTGCTAGAAG 57.071 40.909 0.00 0.00 0.00 2.85
52 53 6.788684 TTTATTGTGCTTAACGTGCTAGAA 57.211 33.333 0.00 0.00 0.00 2.10
53 54 6.788684 TTTTATTGTGCTTAACGTGCTAGA 57.211 33.333 0.00 0.00 0.00 2.43
54 55 8.447787 AATTTTTATTGTGCTTAACGTGCTAG 57.552 30.769 0.00 0.00 0.00 3.42
55 56 8.804688 AAATTTTTATTGTGCTTAACGTGCTA 57.195 26.923 0.00 0.00 0.00 3.49
56 57 7.651704 AGAAATTTTTATTGTGCTTAACGTGCT 59.348 29.630 0.00 0.00 0.00 4.40
57 58 7.783209 AGAAATTTTTATTGTGCTTAACGTGC 58.217 30.769 0.00 0.00 0.00 5.34
58 59 9.777843 GAAGAAATTTTTATTGTGCTTAACGTG 57.222 29.630 0.00 0.00 0.00 4.49
59 60 9.744468 AGAAGAAATTTTTATTGTGCTTAACGT 57.256 25.926 0.00 0.00 0.00 3.99
82 83 2.233305 AGCCCGTCCTTCTTCTAGAA 57.767 50.000 4.81 4.81 32.50 2.10
83 84 2.100989 GAAGCCCGTCCTTCTTCTAGA 58.899 52.381 5.37 0.00 38.50 2.43
84 85 2.588027 GAAGCCCGTCCTTCTTCTAG 57.412 55.000 5.37 0.00 38.50 2.43
90 91 3.756963 ACAAATTAAGAAGCCCGTCCTTC 59.243 43.478 4.62 4.62 41.15 3.46
91 92 3.506067 CACAAATTAAGAAGCCCGTCCTT 59.494 43.478 0.00 0.00 0.00 3.36
92 93 3.081804 CACAAATTAAGAAGCCCGTCCT 58.918 45.455 0.00 0.00 0.00 3.85
93 94 2.163613 CCACAAATTAAGAAGCCCGTCC 59.836 50.000 0.00 0.00 0.00 4.79
94 95 2.163613 CCCACAAATTAAGAAGCCCGTC 59.836 50.000 0.00 0.00 0.00 4.79
95 96 2.167662 CCCACAAATTAAGAAGCCCGT 58.832 47.619 0.00 0.00 0.00 5.28
96 97 1.476488 CCCCACAAATTAAGAAGCCCG 59.524 52.381 0.00 0.00 0.00 6.13
97 98 2.496070 GTCCCCACAAATTAAGAAGCCC 59.504 50.000 0.00 0.00 0.00 5.19
98 99 3.056821 GTGTCCCCACAAATTAAGAAGCC 60.057 47.826 0.00 0.00 41.44 4.35
99 100 3.826729 AGTGTCCCCACAAATTAAGAAGC 59.173 43.478 0.00 0.00 44.39 3.86
100 101 6.405278 AAAGTGTCCCCACAAATTAAGAAG 57.595 37.500 0.00 0.00 44.39 2.85
101 102 8.485578 AATAAAGTGTCCCCACAAATTAAGAA 57.514 30.769 0.00 0.00 44.39 2.52
102 103 8.485578 AAATAAAGTGTCCCCACAAATTAAGA 57.514 30.769 0.00 0.00 44.39 2.10
105 106 9.369672 ACTAAAATAAAGTGTCCCCACAAATTA 57.630 29.630 0.00 0.00 44.39 1.40
106 107 8.257602 ACTAAAATAAAGTGTCCCCACAAATT 57.742 30.769 0.00 0.00 44.39 1.82
107 108 7.849322 ACTAAAATAAAGTGTCCCCACAAAT 57.151 32.000 0.00 0.00 44.39 2.32
108 109 7.493367 CAACTAAAATAAAGTGTCCCCACAAA 58.507 34.615 0.00 0.00 44.39 2.83
109 110 6.461788 GCAACTAAAATAAAGTGTCCCCACAA 60.462 38.462 0.00 0.00 44.39 3.33
110 111 5.010213 GCAACTAAAATAAAGTGTCCCCACA 59.990 40.000 0.00 0.00 44.39 4.17
111 112 5.466819 GCAACTAAAATAAAGTGTCCCCAC 58.533 41.667 0.00 0.00 42.17 4.61
112 113 4.525100 GGCAACTAAAATAAAGTGTCCCCA 59.475 41.667 0.00 0.00 0.00 4.96
113 114 4.525100 TGGCAACTAAAATAAAGTGTCCCC 59.475 41.667 0.00 0.00 37.61 4.81
114 115 5.243060 AGTGGCAACTAAAATAAAGTGTCCC 59.757 40.000 0.00 0.00 33.79 4.46
115 116 6.016610 TGAGTGGCAACTAAAATAAAGTGTCC 60.017 38.462 0.00 0.00 36.52 4.02
116 117 6.966021 TGAGTGGCAACTAAAATAAAGTGTC 58.034 36.000 0.00 0.00 36.52 3.67
117 118 6.952773 TGAGTGGCAACTAAAATAAAGTGT 57.047 33.333 0.00 0.00 36.52 3.55
118 119 7.867403 ACAATGAGTGGCAACTAAAATAAAGTG 59.133 33.333 0.00 0.00 36.52 3.16
119 120 7.951591 ACAATGAGTGGCAACTAAAATAAAGT 58.048 30.769 0.00 0.00 36.52 2.66
120 121 8.816640 AACAATGAGTGGCAACTAAAATAAAG 57.183 30.769 0.00 0.00 36.52 1.85
121 122 9.255304 GAAACAATGAGTGGCAACTAAAATAAA 57.745 29.630 0.00 0.00 36.52 1.40
122 123 7.870445 GGAAACAATGAGTGGCAACTAAAATAA 59.130 33.333 0.00 0.00 36.52 1.40
123 124 7.375053 GGAAACAATGAGTGGCAACTAAAATA 58.625 34.615 0.00 0.00 36.52 1.40
124 125 6.223120 GGAAACAATGAGTGGCAACTAAAAT 58.777 36.000 0.00 0.00 36.52 1.82
125 126 5.452636 GGGAAACAATGAGTGGCAACTAAAA 60.453 40.000 0.00 0.00 36.52 1.52
126 127 4.038642 GGGAAACAATGAGTGGCAACTAAA 59.961 41.667 0.00 0.00 36.52 1.85
127 128 3.572255 GGGAAACAATGAGTGGCAACTAA 59.428 43.478 0.00 0.00 36.52 2.24
128 129 3.153919 GGGAAACAATGAGTGGCAACTA 58.846 45.455 0.00 0.00 36.52 2.24
129 130 1.963515 GGGAAACAATGAGTGGCAACT 59.036 47.619 0.00 0.00 40.21 3.16
130 131 1.963515 AGGGAAACAATGAGTGGCAAC 59.036 47.619 0.00 0.00 0.00 4.17
131 132 2.364970 CAAGGGAAACAATGAGTGGCAA 59.635 45.455 0.00 0.00 0.00 4.52
132 133 1.962807 CAAGGGAAACAATGAGTGGCA 59.037 47.619 0.00 0.00 0.00 4.92
133 134 1.273327 CCAAGGGAAACAATGAGTGGC 59.727 52.381 0.00 0.00 0.00 5.01
134 135 2.875296 TCCAAGGGAAACAATGAGTGG 58.125 47.619 0.00 0.00 0.00 4.00
135 136 4.523943 TGAATCCAAGGGAAACAATGAGTG 59.476 41.667 0.00 0.00 34.34 3.51
136 137 4.524328 GTGAATCCAAGGGAAACAATGAGT 59.476 41.667 0.00 0.00 34.34 3.41
137 138 4.523943 TGTGAATCCAAGGGAAACAATGAG 59.476 41.667 0.00 0.00 34.34 2.90
138 139 4.478203 TGTGAATCCAAGGGAAACAATGA 58.522 39.130 0.00 0.00 34.34 2.57
139 140 4.870123 TGTGAATCCAAGGGAAACAATG 57.130 40.909 0.00 0.00 34.34 2.82
140 141 5.885449 TTTGTGAATCCAAGGGAAACAAT 57.115 34.783 10.43 0.00 35.29 2.71
141 142 5.885449 ATTTGTGAATCCAAGGGAAACAA 57.115 34.783 7.18 7.18 34.34 2.83
142 143 6.239458 GGTTATTTGTGAATCCAAGGGAAACA 60.239 38.462 0.00 0.00 34.34 2.83
143 144 6.014584 AGGTTATTTGTGAATCCAAGGGAAAC 60.015 38.462 0.00 0.00 34.34 2.78
144 145 6.081356 AGGTTATTTGTGAATCCAAGGGAAA 58.919 36.000 0.00 0.00 34.34 3.13
145 146 5.650283 AGGTTATTTGTGAATCCAAGGGAA 58.350 37.500 0.00 0.00 34.34 3.97
146 147 5.269554 AGGTTATTTGTGAATCCAAGGGA 57.730 39.130 0.00 0.00 35.55 4.20
147 148 7.475137 TTAAGGTTATTTGTGAATCCAAGGG 57.525 36.000 0.00 0.00 0.00 3.95
177 178 9.322773 ATCAACAACTATGATTCTGTGATACAG 57.677 33.333 2.62 2.62 37.54 2.74
181 182 8.820933 CGTTATCAACAACTATGATTCTGTGAT 58.179 33.333 0.00 0.00 38.44 3.06
182 183 7.201522 GCGTTATCAACAACTATGATTCTGTGA 60.202 37.037 0.00 0.00 38.44 3.58
183 184 6.901887 GCGTTATCAACAACTATGATTCTGTG 59.098 38.462 0.00 0.00 38.44 3.66
184 185 6.818644 AGCGTTATCAACAACTATGATTCTGT 59.181 34.615 0.00 0.00 38.44 3.41
185 186 7.239166 AGCGTTATCAACAACTATGATTCTG 57.761 36.000 0.00 0.00 38.44 3.02
186 187 6.199154 CGAGCGTTATCAACAACTATGATTCT 59.801 38.462 0.00 0.00 38.44 2.40
187 188 6.019801 ACGAGCGTTATCAACAACTATGATTC 60.020 38.462 0.00 0.00 38.44 2.52
188 189 5.810587 ACGAGCGTTATCAACAACTATGATT 59.189 36.000 0.00 0.00 38.44 2.57
189 190 5.348986 ACGAGCGTTATCAACAACTATGAT 58.651 37.500 0.00 0.00 40.49 2.45
190 191 4.740268 ACGAGCGTTATCAACAACTATGA 58.260 39.130 0.00 0.00 0.00 2.15
191 192 5.450376 AACGAGCGTTATCAACAACTATG 57.550 39.130 6.46 0.00 36.46 2.23
192 193 6.252869 CACTAACGAGCGTTATCAACAACTAT 59.747 38.462 14.86 0.00 39.49 2.12
193 194 5.570206 CACTAACGAGCGTTATCAACAACTA 59.430 40.000 14.86 0.00 39.49 2.24
194 195 4.384846 CACTAACGAGCGTTATCAACAACT 59.615 41.667 14.86 0.00 39.49 3.16
195 196 4.433805 CCACTAACGAGCGTTATCAACAAC 60.434 45.833 14.86 0.00 39.49 3.32
196 197 3.676172 CCACTAACGAGCGTTATCAACAA 59.324 43.478 14.86 0.00 39.49 2.83
197 198 3.247442 CCACTAACGAGCGTTATCAACA 58.753 45.455 14.86 0.00 39.49 3.33
198 199 3.248266 ACCACTAACGAGCGTTATCAAC 58.752 45.455 14.86 0.00 39.49 3.18
199 200 3.581024 ACCACTAACGAGCGTTATCAA 57.419 42.857 14.86 0.00 39.49 2.57
200 201 3.247442 CAACCACTAACGAGCGTTATCA 58.753 45.455 14.86 0.00 39.49 2.15
201 202 3.248266 ACAACCACTAACGAGCGTTATC 58.752 45.455 14.86 0.00 39.49 1.75
202 203 3.308438 ACAACCACTAACGAGCGTTAT 57.692 42.857 14.86 4.45 39.49 1.89
203 204 2.798976 ACAACCACTAACGAGCGTTA 57.201 45.000 13.94 13.94 39.31 3.18
204 205 2.798976 TACAACCACTAACGAGCGTT 57.201 45.000 13.11 13.11 41.65 4.84
205 206 3.441572 AGTATACAACCACTAACGAGCGT 59.558 43.478 5.50 0.00 0.00 5.07
206 207 4.025015 AGTATACAACCACTAACGAGCG 57.975 45.455 5.50 0.00 0.00 5.03
207 208 4.974888 GCTAGTATACAACCACTAACGAGC 59.025 45.833 5.50 0.00 0.00 5.03
208 209 5.298777 AGGCTAGTATACAACCACTAACGAG 59.701 44.000 5.50 0.00 0.00 4.18
209 210 5.195940 AGGCTAGTATACAACCACTAACGA 58.804 41.667 5.50 0.00 0.00 3.85
210 211 5.506982 GGAGGCTAGTATACAACCACTAACG 60.507 48.000 5.50 0.00 0.00 3.18
211 212 5.221402 GGGAGGCTAGTATACAACCACTAAC 60.221 48.000 5.50 0.00 0.00 2.34
212 213 4.897670 GGGAGGCTAGTATACAACCACTAA 59.102 45.833 5.50 0.00 0.00 2.24
213 214 4.079038 TGGGAGGCTAGTATACAACCACTA 60.079 45.833 5.50 0.00 0.00 2.74
214 215 3.306613 GGGAGGCTAGTATACAACCACT 58.693 50.000 5.50 0.00 0.00 4.00
215 216 3.036091 TGGGAGGCTAGTATACAACCAC 58.964 50.000 5.50 2.10 0.00 4.16
216 217 3.408157 TGGGAGGCTAGTATACAACCA 57.592 47.619 5.50 0.02 0.00 3.67
217 218 4.163649 ACTTTGGGAGGCTAGTATACAACC 59.836 45.833 5.50 3.28 0.00 3.77
218 219 5.354842 ACTTTGGGAGGCTAGTATACAAC 57.645 43.478 5.50 0.00 0.00 3.32
219 220 4.098960 CGACTTTGGGAGGCTAGTATACAA 59.901 45.833 5.50 0.00 0.00 2.41
220 221 3.635373 CGACTTTGGGAGGCTAGTATACA 59.365 47.826 5.50 0.00 0.00 2.29
221 222 3.887716 TCGACTTTGGGAGGCTAGTATAC 59.112 47.826 0.00 0.00 0.00 1.47
222 223 4.174704 TCGACTTTGGGAGGCTAGTATA 57.825 45.455 0.00 0.00 0.00 1.47
223 224 3.028094 TCGACTTTGGGAGGCTAGTAT 57.972 47.619 0.00 0.00 0.00 2.12
224 225 2.519771 TCGACTTTGGGAGGCTAGTA 57.480 50.000 0.00 0.00 0.00 1.82
225 226 1.640917 TTCGACTTTGGGAGGCTAGT 58.359 50.000 0.00 0.00 0.00 2.57
226 227 2.762535 TTTCGACTTTGGGAGGCTAG 57.237 50.000 0.00 0.00 0.00 3.42
227 228 2.838202 AGATTTCGACTTTGGGAGGCTA 59.162 45.455 0.00 0.00 0.00 3.93
228 229 1.630878 AGATTTCGACTTTGGGAGGCT 59.369 47.619 0.00 0.00 0.00 4.58
229 230 2.115343 AGATTTCGACTTTGGGAGGC 57.885 50.000 0.00 0.00 0.00 4.70
230 231 3.412386 ACAAGATTTCGACTTTGGGAGG 58.588 45.455 0.00 0.00 0.00 4.30
231 232 4.320494 CCAACAAGATTTCGACTTTGGGAG 60.320 45.833 0.00 0.00 0.00 4.30
232 233 3.568007 CCAACAAGATTTCGACTTTGGGA 59.432 43.478 0.00 0.00 0.00 4.37
233 234 3.305335 CCCAACAAGATTTCGACTTTGGG 60.305 47.826 8.74 8.74 38.33 4.12
234 235 3.317993 ACCCAACAAGATTTCGACTTTGG 59.682 43.478 0.00 0.00 0.00 3.28
235 236 4.036262 TCACCCAACAAGATTTCGACTTTG 59.964 41.667 0.00 0.00 0.00 2.77
236 237 4.204012 TCACCCAACAAGATTTCGACTTT 58.796 39.130 0.00 0.00 0.00 2.66
237 238 3.815401 CTCACCCAACAAGATTTCGACTT 59.185 43.478 0.00 0.00 0.00 3.01
238 239 3.403038 CTCACCCAACAAGATTTCGACT 58.597 45.455 0.00 0.00 0.00 4.18
239 240 2.484264 CCTCACCCAACAAGATTTCGAC 59.516 50.000 0.00 0.00 0.00 4.20
240 241 2.370519 TCCTCACCCAACAAGATTTCGA 59.629 45.455 0.00 0.00 0.00 3.71
241 242 2.778299 TCCTCACCCAACAAGATTTCG 58.222 47.619 0.00 0.00 0.00 3.46
242 243 4.593956 AGATCCTCACCCAACAAGATTTC 58.406 43.478 0.00 0.00 0.00 2.17
243 244 4.568592 GGAGATCCTCACCCAACAAGATTT 60.569 45.833 0.00 0.00 31.08 2.17
244 245 3.054065 GGAGATCCTCACCCAACAAGATT 60.054 47.826 0.00 0.00 31.08 2.40
245 246 2.507471 GGAGATCCTCACCCAACAAGAT 59.493 50.000 0.00 0.00 31.08 2.40
246 247 1.909302 GGAGATCCTCACCCAACAAGA 59.091 52.381 0.00 0.00 31.08 3.02
247 248 1.912043 AGGAGATCCTCACCCAACAAG 59.088 52.381 0.00 0.00 44.77 3.16
248 249 2.044793 AGGAGATCCTCACCCAACAA 57.955 50.000 0.00 0.00 44.77 2.83
249 250 2.940514 TAGGAGATCCTCACCCAACA 57.059 50.000 4.22 0.00 44.77 3.33
250 251 3.519913 ACTTTAGGAGATCCTCACCCAAC 59.480 47.826 4.22 0.00 44.77 3.77
251 252 3.519510 CACTTTAGGAGATCCTCACCCAA 59.480 47.826 4.22 0.00 44.77 4.12
252 253 3.107601 CACTTTAGGAGATCCTCACCCA 58.892 50.000 4.22 0.00 44.77 4.51
253 254 3.375699 TCACTTTAGGAGATCCTCACCC 58.624 50.000 4.22 0.00 44.77 4.61
254 255 4.223032 TGTTCACTTTAGGAGATCCTCACC 59.777 45.833 4.22 0.00 44.77 4.02
255 256 5.407407 TGTTCACTTTAGGAGATCCTCAC 57.593 43.478 4.22 0.00 44.77 3.51
256 257 5.721480 TCATGTTCACTTTAGGAGATCCTCA 59.279 40.000 4.22 0.00 44.77 3.86
257 258 6.227298 TCATGTTCACTTTAGGAGATCCTC 57.773 41.667 4.22 0.00 44.77 3.71
259 260 5.762218 CCATCATGTTCACTTTAGGAGATCC 59.238 44.000 0.00 0.00 0.00 3.36
260 261 5.238214 GCCATCATGTTCACTTTAGGAGATC 59.762 44.000 0.00 0.00 0.00 2.75
261 262 5.104193 AGCCATCATGTTCACTTTAGGAGAT 60.104 40.000 0.00 0.00 0.00 2.75
262 263 4.225942 AGCCATCATGTTCACTTTAGGAGA 59.774 41.667 0.00 0.00 0.00 3.71
263 264 4.521146 AGCCATCATGTTCACTTTAGGAG 58.479 43.478 0.00 0.00 0.00 3.69
264 265 4.517285 GAGCCATCATGTTCACTTTAGGA 58.483 43.478 0.00 0.00 0.00 2.94
265 266 3.629398 GGAGCCATCATGTTCACTTTAGG 59.371 47.826 0.00 0.00 0.00 2.69
266 267 4.521146 AGGAGCCATCATGTTCACTTTAG 58.479 43.478 0.00 0.00 0.00 1.85
267 268 4.574674 AGGAGCCATCATGTTCACTTTA 57.425 40.909 0.00 0.00 0.00 1.85
268 269 3.446442 AGGAGCCATCATGTTCACTTT 57.554 42.857 0.00 0.00 0.00 2.66
269 270 4.785346 ATAGGAGCCATCATGTTCACTT 57.215 40.909 0.00 0.00 0.00 3.16
270 271 4.785346 AATAGGAGCCATCATGTTCACT 57.215 40.909 0.00 0.00 0.00 3.41
271 272 5.615289 ACTAATAGGAGCCATCATGTTCAC 58.385 41.667 0.00 0.00 0.00 3.18
272 273 5.894298 ACTAATAGGAGCCATCATGTTCA 57.106 39.130 0.00 0.00 0.00 3.18
273 274 6.291377 TCAACTAATAGGAGCCATCATGTTC 58.709 40.000 0.00 0.00 0.00 3.18
274 275 6.252599 TCAACTAATAGGAGCCATCATGTT 57.747 37.500 0.00 0.00 0.00 2.71
275 276 5.894298 TCAACTAATAGGAGCCATCATGT 57.106 39.130 0.00 0.00 0.00 3.21
276 277 6.294473 ACTTCAACTAATAGGAGCCATCATG 58.706 40.000 0.00 0.00 0.00 3.07
277 278 6.506538 ACTTCAACTAATAGGAGCCATCAT 57.493 37.500 0.00 0.00 0.00 2.45
278 279 5.957771 ACTTCAACTAATAGGAGCCATCA 57.042 39.130 0.00 0.00 0.00 3.07
279 280 8.910351 AAATACTTCAACTAATAGGAGCCATC 57.090 34.615 0.00 0.00 0.00 3.51
323 324 9.334947 GTCATAAGAATCATGAGGAGAAATCAA 57.665 33.333 0.09 0.00 33.18 2.57
324 325 8.488668 TGTCATAAGAATCATGAGGAGAAATCA 58.511 33.333 0.09 0.00 33.18 2.57
325 326 8.899427 TGTCATAAGAATCATGAGGAGAAATC 57.101 34.615 0.09 0.00 33.18 2.17
326 327 9.286170 CATGTCATAAGAATCATGAGGAGAAAT 57.714 33.333 0.09 0.00 39.68 2.17
327 328 8.488668 TCATGTCATAAGAATCATGAGGAGAAA 58.511 33.333 0.09 0.00 40.73 2.52
328 329 8.026396 TCATGTCATAAGAATCATGAGGAGAA 57.974 34.615 0.09 0.00 40.73 2.87
329 330 7.607615 TCATGTCATAAGAATCATGAGGAGA 57.392 36.000 0.09 0.00 40.73 3.71
330 331 9.589111 CTATCATGTCATAAGAATCATGAGGAG 57.411 37.037 0.09 7.96 45.88 3.69
331 332 8.537858 CCTATCATGTCATAAGAATCATGAGGA 58.462 37.037 0.09 3.31 45.88 3.71
332 333 7.280428 GCCTATCATGTCATAAGAATCATGAGG 59.720 40.741 0.09 9.25 45.88 3.86
333 334 8.041919 AGCCTATCATGTCATAAGAATCATGAG 58.958 37.037 0.09 1.76 45.88 2.90
334 335 7.914859 AGCCTATCATGTCATAAGAATCATGA 58.085 34.615 0.00 0.00 46.43 3.07
335 336 8.563123 AAGCCTATCATGTCATAAGAATCATG 57.437 34.615 0.00 0.00 38.96 3.07
346 347 9.461312 AGTTGTTTAATTAAGCCTATCATGTCA 57.539 29.630 9.27 0.00 0.00 3.58
347 348 9.937175 GAGTTGTTTAATTAAGCCTATCATGTC 57.063 33.333 9.27 0.00 0.00 3.06
348 349 9.686683 AGAGTTGTTTAATTAAGCCTATCATGT 57.313 29.630 9.27 0.00 0.00 3.21
349 350 9.941664 CAGAGTTGTTTAATTAAGCCTATCATG 57.058 33.333 9.27 0.00 0.00 3.07
350 351 9.125026 CCAGAGTTGTTTAATTAAGCCTATCAT 57.875 33.333 9.27 0.00 0.00 2.45
351 352 7.067008 GCCAGAGTTGTTTAATTAAGCCTATCA 59.933 37.037 9.27 0.00 0.00 2.15
352 353 7.283354 AGCCAGAGTTGTTTAATTAAGCCTATC 59.717 37.037 9.27 4.97 0.00 2.08
353 354 7.119387 AGCCAGAGTTGTTTAATTAAGCCTAT 58.881 34.615 9.27 0.00 0.00 2.57
354 355 6.481643 AGCCAGAGTTGTTTAATTAAGCCTA 58.518 36.000 9.27 0.00 0.00 3.93
355 356 5.325239 AGCCAGAGTTGTTTAATTAAGCCT 58.675 37.500 9.27 0.89 0.00 4.58
356 357 5.644977 AGCCAGAGTTGTTTAATTAAGCC 57.355 39.130 9.27 0.74 0.00 4.35
415 416 5.116882 ACTTAGTTCCACGCTTCAATATCC 58.883 41.667 0.00 0.00 0.00 2.59
470 481 8.973378 GCTCGCCAATATGAATATTCTACTATC 58.027 37.037 16.24 0.78 30.91 2.08
472 483 8.067751 AGCTCGCCAATATGAATATTCTACTA 57.932 34.615 16.24 6.29 30.91 1.82
524 536 8.807581 GTTGAAATTTGAACCAAGTAAGACAAG 58.192 33.333 9.13 0.00 0.00 3.16
564 577 6.106648 TCCATATAGGAACATCTGAGCTTG 57.893 41.667 0.00 0.00 45.65 4.01
594 608 1.005687 TGAATGACCCACCATGCATGA 59.994 47.619 28.31 6.34 27.39 3.07
605 621 3.689649 GGTGACATTGTACTGAATGACCC 59.310 47.826 11.70 6.56 36.89 4.46
613 629 0.796312 GCACGGGTGACATTGTACTG 59.204 55.000 2.38 0.00 0.00 2.74
614 630 0.685097 AGCACGGGTGACATTGTACT 59.315 50.000 2.38 0.00 0.00 2.73
618 634 2.665649 TACTAGCACGGGTGACATTG 57.334 50.000 2.38 0.00 0.00 2.82
637 653 8.165239 TGCGGCAAACTTAATGATATTATCTT 57.835 30.769 0.00 0.00 0.00 2.40
640 656 7.362662 CACTGCGGCAAACTTAATGATATTAT 58.637 34.615 3.44 0.00 0.00 1.28
646 662 1.539388 CCACTGCGGCAAACTTAATGA 59.461 47.619 3.44 0.00 0.00 2.57
703 719 9.577222 AAAACAGTACTTAAAATAGGCAGGTAA 57.423 29.630 0.00 0.00 0.00 2.85
704 720 9.005777 CAAAACAGTACTTAAAATAGGCAGGTA 57.994 33.333 0.00 0.00 0.00 3.08
740 763 2.053747 ACCTATCCAACTCCACCCAA 57.946 50.000 0.00 0.00 0.00 4.12
806 858 9.806203 CAGCCACAATGATGAAATTAAATAAGA 57.194 29.630 0.00 0.00 0.00 2.10
871 941 5.864418 AGTTAAACCATGAGCGTATCCTA 57.136 39.130 0.00 0.00 0.00 2.94
874 944 8.583810 TGTATTAGTTAAACCATGAGCGTATC 57.416 34.615 0.00 0.00 0.00 2.24
877 947 7.045416 TGATGTATTAGTTAAACCATGAGCGT 58.955 34.615 0.00 0.00 0.00 5.07
879 949 9.884465 GAATGATGTATTAGTTAAACCATGAGC 57.116 33.333 0.00 0.00 0.00 4.26
966 1043 8.150296 TGAGAATTTCTAATGTCTCACTGTTGA 58.850 33.333 0.00 0.00 41.13 3.18
1083 1161 3.066291 TGTGTCCCATACTTCGCAAAT 57.934 42.857 0.00 0.00 0.00 2.32
1193 1271 4.281941 AGCTCTCATAGACTGTGTTGTTGA 59.718 41.667 0.00 0.00 0.00 3.18
1200 1278 1.755959 AGCCAGCTCTCATAGACTGTG 59.244 52.381 0.00 0.00 0.00 3.66
1201 1279 1.755959 CAGCCAGCTCTCATAGACTGT 59.244 52.381 0.00 0.00 0.00 3.55
1206 1284 0.680618 CCTCCAGCCAGCTCTCATAG 59.319 60.000 0.00 0.00 0.00 2.23
1219 1297 2.064581 CCTTCCGTACCCCCTCCAG 61.065 68.421 0.00 0.00 0.00 3.86
1243 1321 4.743124 TCCACCATGTCCTCCGTATTATA 58.257 43.478 0.00 0.00 0.00 0.98
1250 1328 0.105593 CTCATCCACCATGTCCTCCG 59.894 60.000 0.00 0.00 33.66 4.63
1294 1372 7.285401 CAGGTAAAAGCAACACCCTATATCATT 59.715 37.037 0.00 0.00 32.43 2.57
1350 1428 4.287766 AGCTATCCGGTTCAAAGAAAGT 57.712 40.909 0.00 0.00 0.00 2.66
1372 1450 4.293494 TCCTCTATCTGCTTCACCTTGAT 58.707 43.478 0.00 0.00 0.00 2.57
1386 1464 4.957327 AGGTGTGTAAGGTCTTCCTCTATC 59.043 45.833 0.00 0.00 44.35 2.08
1393 1471 3.321111 TCTGACAGGTGTGTAAGGTCTTC 59.679 47.826 1.81 0.00 35.94 2.87
1438 1516 5.070580 AGCTACTAGTATCCCCATTGTTCAC 59.929 44.000 2.33 0.00 0.00 3.18
1465 1546 5.416271 TGGGACCTCTTAACAATGTAGTC 57.584 43.478 0.00 0.00 0.00 2.59
1476 1557 3.117625 TCGCTAGATCTTGGGACCTCTTA 60.118 47.826 17.62 0.00 0.00 2.10
1517 1598 1.683917 CGACCCCCACTAGATCTTCAG 59.316 57.143 0.00 0.00 0.00 3.02
1536 1620 4.507756 TGAAGTGTTTCACTGTTCTCATCG 59.492 41.667 3.12 0.00 44.62 3.84
1558 1642 0.179020 TCACCTGCCAACCACTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
1579 1663 3.242543 GCTATCACAGAGCGTTCCAAATG 60.243 47.826 0.00 0.00 0.00 2.32
1721 1805 9.050601 GTTCCTTGATTATATTCCTCAAGACAG 57.949 37.037 16.90 6.60 45.57 3.51
1752 1836 7.784470 AGATAGAACACTGACTTTACCTCTT 57.216 36.000 0.00 0.00 0.00 2.85
1783 1870 4.145436 TGGGATGTCCATGTCCGT 57.855 55.556 0.86 0.00 41.46 4.69
1816 1903 9.533253 CTTTTGTTGTTCCAGAAATGTCTTAAT 57.467 29.630 0.00 0.00 28.78 1.40
1818 1905 8.062065 ACTTTTGTTGTTCCAGAAATGTCTTA 57.938 30.769 0.00 0.00 28.78 2.10
1823 1910 9.311916 TCAAATACTTTTGTTGTTCCAGAAATG 57.688 29.630 0.00 0.00 42.37 2.32
1854 1941 3.054875 CAGGAGTCCAAACATCATCCAGA 60.055 47.826 12.86 0.00 0.00 3.86
1855 1942 3.054875 TCAGGAGTCCAAACATCATCCAG 60.055 47.826 12.86 0.00 0.00 3.86
1875 1962 7.148255 ACGCTAGACAAATCATTAAATGCTTCA 60.148 33.333 0.00 0.00 0.00 3.02
1899 1986 7.615582 ACCCATATCATTATGAATAAGCACG 57.384 36.000 0.00 0.00 37.94 5.34
1923 2010 5.456548 TTGTTGTGATTACCAGTCGACTA 57.543 39.130 19.57 2.37 0.00 2.59
1927 2014 2.742053 CCCTTGTTGTGATTACCAGTCG 59.258 50.000 0.00 0.00 0.00 4.18
1996 2083 3.077359 CCTTGTCTTCAGGTAAAGCTGG 58.923 50.000 9.15 0.00 0.00 4.85
1997 2084 2.485814 GCCTTGTCTTCAGGTAAAGCTG 59.514 50.000 2.75 2.75 0.00 4.24
2007 2094 1.918262 AGATCCCATGCCTTGTCTTCA 59.082 47.619 0.00 0.00 0.00 3.02
2031 2118 5.308825 TCTCTTGGAAAGGCTTTCTTACAG 58.691 41.667 32.28 23.48 46.24 2.74
2087 2174 5.741011 TGCTAACTATTTCCTCCGACAAAT 58.259 37.500 0.00 0.00 0.00 2.32
2094 2181 4.261801 TGCACTTGCTAACTATTTCCTCC 58.738 43.478 2.33 0.00 42.66 4.30
2244 2331 6.830324 AGCTCAGATGCAAAACATTCCTTATA 59.170 34.615 0.00 0.00 39.84 0.98
2368 2455 1.067582 CGATGAACCCCTCGGCTAC 59.932 63.158 0.00 0.00 0.00 3.58
2415 2502 1.571955 TCAGATAGCCTTCTGCCACA 58.428 50.000 8.32 0.00 42.37 4.17
2484 2571 4.672587 TCTGAATTCCTTCATCCTACCG 57.327 45.455 2.27 0.00 40.52 4.02
2545 2633 4.702612 TGCAACACCAAAACAGTTCTTCTA 59.297 37.500 0.00 0.00 0.00 2.10
2566 2654 5.470098 ACCGTCCACATTTATTCTCATATGC 59.530 40.000 0.00 0.00 0.00 3.14
2616 2705 6.449635 TCATCTTTTTGTTTGTGCAGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2648 2737 4.013728 GTGGTGCATATTGGAAACTGGTA 58.986 43.478 0.00 0.00 0.00 3.25
2653 2742 3.427503 CGAAGGTGGTGCATATTGGAAAC 60.428 47.826 0.00 0.00 0.00 2.78
2670 2759 3.664486 CGAGCGTAATGATAGTTCGAAGG 59.336 47.826 0.00 0.00 40.20 3.46
2691 2780 4.025396 GTGAATGATGACTTGCTATCACCG 60.025 45.833 0.00 0.00 36.26 4.94
2718 2807 5.105716 TGACTCATTACACAGAAGAGGTAGC 60.106 44.000 0.00 0.00 0.00 3.58
2873 2966 5.234329 GTCGAGTGTCAACAGATTTGAAAGA 59.766 40.000 0.00 0.00 0.00 2.52
2961 3054 9.414295 TGAATCAATTGTTTTCTGAGCAAATAG 57.586 29.630 18.19 0.00 0.00 1.73
2990 3083 1.805345 CAACTTGCAAGCTCTCTCCAG 59.195 52.381 26.27 0.00 0.00 3.86
3004 3097 1.298563 CGCACACCACTGCAACTTG 60.299 57.895 0.00 0.00 36.94 3.16
3006 3099 0.250295 ATACGCACACCACTGCAACT 60.250 50.000 0.00 0.00 36.94 3.16
3045 3138 6.258068 GCTTGTAGCGTCTGAAGGTTTATTAT 59.742 38.462 0.00 0.00 0.00 1.28
3056 3149 1.275010 TCCAATGCTTGTAGCGTCTGA 59.725 47.619 0.00 0.00 46.26 3.27
3120 3214 6.150140 ACATTCAATAACCTCAAGCTTCTCAC 59.850 38.462 0.00 0.00 0.00 3.51
3162 3256 9.391006 CTTAACTAGAGACTCACTGATACTTCT 57.609 37.037 5.02 0.00 0.00 2.85
3165 3259 9.337396 CATCTTAACTAGAGACTCACTGATACT 57.663 37.037 5.02 0.00 36.02 2.12
3186 3280 5.700402 AGGTAGGACAAATACTGCATCTT 57.300 39.130 0.00 0.00 0.00 2.40
3212 3306 6.318144 CCTCATTCTCATTACTTGCATTCACT 59.682 38.462 0.00 0.00 0.00 3.41
3257 3352 1.904865 CCTTTGCAGGCTTGGCAGA 60.905 57.895 0.00 0.00 43.05 4.26
3326 3421 2.503356 CTGTCCCTCTACAGCTTGGAAT 59.497 50.000 0.00 0.00 40.40 3.01
3338 3433 6.213600 ACAATACATACAAGTTCTGTCCCTCT 59.786 38.462 0.00 0.00 39.64 3.69
3340 3435 6.374417 ACAATACATACAAGTTCTGTCCCT 57.626 37.500 0.00 0.00 39.64 4.20
3523 3618 3.908643 TCTCTAGCCGACTCAGACTAA 57.091 47.619 0.00 0.00 0.00 2.24
3526 3621 3.468770 TGTATCTCTAGCCGACTCAGAC 58.531 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.