Multiple sequence alignment - TraesCS7A01G046000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G046000 chr7A 100.000 4748 0 0 1 4748 20909716 20914463 0.000000e+00 8769.0
1 TraesCS7A01G046000 chr7A 85.829 3493 422 35 896 4361 20966196 20969642 0.000000e+00 3640.0
2 TraesCS7A01G046000 chr7A 86.845 2919 360 18 868 3775 20650698 20653603 0.000000e+00 3241.0
3 TraesCS7A01G046000 chr7A 85.160 2911 399 26 896 3786 20482718 20485615 0.000000e+00 2952.0
4 TraesCS7A01G046000 chr7A 93.066 274 19 0 4475 4748 20969662 20969935 7.400000e-108 401.0
5 TraesCS7A01G046000 chr7D 88.928 2827 293 8 868 3687 20598267 20601080 0.000000e+00 3469.0
6 TraesCS7A01G046000 chr7D 83.691 3029 446 32 704 3694 20485323 20488341 0.000000e+00 2813.0
7 TraesCS7A01G046000 chr7D 86.091 417 26 14 4353 4748 20314126 20314531 2.040000e-113 420.0
8 TraesCS7A01G046000 chr4A 85.929 2793 373 16 974 3754 713032310 713035094 0.000000e+00 2963.0
9 TraesCS7A01G046000 chr4A 87.500 560 52 11 35 579 494467558 494468114 8.670000e-177 630.0
10 TraesCS7A01G046000 chr4A 87.250 549 58 9 37 579 713013971 713014513 2.430000e-172 616.0
11 TraesCS7A01G046000 chr4A 83.427 531 59 7 35 561 713031532 713032037 2.590000e-127 466.0
12 TraesCS7A01G046000 chr4A 90.725 345 30 2 42 384 617108934 617109278 4.330000e-125 459.0
13 TraesCS7A01G046000 chr4A 82.984 382 42 11 3992 4361 694364887 694364517 1.650000e-84 324.0
14 TraesCS7A01G046000 chr4A 90.303 165 14 2 4472 4634 694364502 694364338 1.030000e-51 215.0
15 TraesCS7A01G046000 chr2A 84.851 2911 415 20 896 3786 733087691 733090595 0.000000e+00 2909.0
16 TraesCS7A01G046000 chr2D 84.674 2897 421 18 896 3778 598813993 598816880 0.000000e+00 2868.0
17 TraesCS7A01G046000 chr2B 84.191 2897 433 19 896 3778 727685951 727688836 0.000000e+00 2789.0
18 TraesCS7A01G046000 chr3D 92.188 128 10 0 577 704 54541308 54541435 1.050000e-41 182.0
19 TraesCS7A01G046000 chr3D 86.517 89 7 1 605 693 598898664 598898747 5.060000e-15 93.5
20 TraesCS7A01G046000 chr5B 89.147 129 14 0 577 705 689598924 689599052 1.370000e-35 161.0
21 TraesCS7A01G046000 chr5B 83.333 126 21 0 579 704 371904785 371904910 3.000000e-22 117.0
22 TraesCS7A01G046000 chr6B 89.062 128 13 1 577 703 585807950 585808077 1.770000e-34 158.0
23 TraesCS7A01G046000 chr4B 89.744 117 12 0 577 693 106822324 106822208 2.960000e-32 150.0
24 TraesCS7A01G046000 chr5A 86.047 129 16 1 577 703 619461050 619461178 2.300000e-28 137.0
25 TraesCS7A01G046000 chr7B 86.325 117 15 1 578 693 700446028 700446144 4.990000e-25 126.0
26 TraesCS7A01G046000 chr6A 81.955 133 16 4 577 703 380251772 380251642 6.500000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G046000 chr7A 20909716 20914463 4747 False 8769.0 8769 100.0000 1 4748 1 chr7A.!!$F3 4747
1 TraesCS7A01G046000 chr7A 20650698 20653603 2905 False 3241.0 3241 86.8450 868 3775 1 chr7A.!!$F2 2907
2 TraesCS7A01G046000 chr7A 20482718 20485615 2897 False 2952.0 2952 85.1600 896 3786 1 chr7A.!!$F1 2890
3 TraesCS7A01G046000 chr7A 20966196 20969935 3739 False 2020.5 3640 89.4475 896 4748 2 chr7A.!!$F4 3852
4 TraesCS7A01G046000 chr7D 20598267 20601080 2813 False 3469.0 3469 88.9280 868 3687 1 chr7D.!!$F3 2819
5 TraesCS7A01G046000 chr7D 20485323 20488341 3018 False 2813.0 2813 83.6910 704 3694 1 chr7D.!!$F2 2990
6 TraesCS7A01G046000 chr4A 713031532 713035094 3562 False 1714.5 2963 84.6780 35 3754 2 chr4A.!!$F4 3719
7 TraesCS7A01G046000 chr4A 494467558 494468114 556 False 630.0 630 87.5000 35 579 1 chr4A.!!$F1 544
8 TraesCS7A01G046000 chr4A 713013971 713014513 542 False 616.0 616 87.2500 37 579 1 chr4A.!!$F3 542
9 TraesCS7A01G046000 chr4A 694364338 694364887 549 True 269.5 324 86.6435 3992 4634 2 chr4A.!!$R1 642
10 TraesCS7A01G046000 chr2A 733087691 733090595 2904 False 2909.0 2909 84.8510 896 3786 1 chr2A.!!$F1 2890
11 TraesCS7A01G046000 chr2D 598813993 598816880 2887 False 2868.0 2868 84.6740 896 3778 1 chr2D.!!$F1 2882
12 TraesCS7A01G046000 chr2B 727685951 727688836 2885 False 2789.0 2789 84.1910 896 3778 1 chr2B.!!$F1 2882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 673 0.108585 ACTTGAACCTGTGACCGCAT 59.891 50.0 0.00 0.00 0.00 4.73 F
695 710 0.184933 TTTACCACTGTGCCAAGCCT 59.815 50.0 1.29 0.00 0.00 4.58 F
696 711 0.250727 TTACCACTGTGCCAAGCCTC 60.251 55.0 1.29 0.00 0.00 4.70 F
1147 1190 0.317479 GGGTCGTGTTGCTAGTGAGT 59.683 55.0 0.00 0.00 0.00 3.41 F
1704 1749 0.535335 GTCACGCTTGGGTCTCCATA 59.465 55.0 0.00 0.00 43.63 2.74 F
3024 3078 0.602060 TTACATGTCGCGGTGGTGTA 59.398 50.0 6.13 8.28 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2409 0.811616 CCTCTGCTGTCCATAACCGC 60.812 60.000 0.00 0.0 38.48 5.68 R
2594 2639 1.751924 GCCGTACATCCTGAAGAGACT 59.248 52.381 0.00 0.0 0.00 3.24 R
2676 2727 2.268298 CCCAGTGTAATGACTGTACGC 58.732 52.381 0.00 0.0 41.65 4.42 R
2918 2972 0.463295 CCCACTAGGCAGCTCATGTG 60.463 60.000 0.00 0.0 0.00 3.21 R
3384 3438 0.616111 GCAGGGGGTCTTCTCTCAGA 60.616 60.000 0.00 0.0 0.00 3.27 R
4427 4510 0.028902 GGACGGCGAAAATGCATACC 59.971 55.000 16.62 0.0 36.28 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 3.017442 GCTCTTGTGGGAAATTCTACCC 58.983 50.000 0.00 0.00 45.74 3.69
87 89 6.844097 TCTACCCCATAAAACAAACATTCC 57.156 37.500 0.00 0.00 0.00 3.01
102 104 3.679389 ACATTCCTGTTGTGTGAGGATC 58.321 45.455 0.00 0.00 38.21 3.36
159 170 8.275187 TGGAGTCATTGTAATTATGGGAGTAT 57.725 34.615 0.00 0.00 0.00 2.12
174 185 9.685276 TTATGGGAGTATATATTGATTTGCCTG 57.315 33.333 0.00 0.00 0.00 4.85
205 216 9.190858 CATCTATGACACTATAGTTTTGCTCTC 57.809 37.037 1.56 0.00 33.38 3.20
224 235 8.571461 TGCTCTCTTATTCATTTCTTGATTGT 57.429 30.769 0.00 0.00 33.34 2.71
237 248 5.689383 TCTTGATTGTGCTACAACTTTCC 57.311 39.130 4.23 0.00 41.40 3.13
251 263 8.874816 GCTACAACTTTCCTTCTTGTATCTTAG 58.125 37.037 0.00 0.00 31.59 2.18
276 288 8.135529 AGTCAACAACTTTAGCTATTTGTTTCC 58.864 33.333 18.85 14.22 39.56 3.13
334 346 6.755607 CCGAGGAAATACTGAACTAAGTTACC 59.244 42.308 0.00 0.00 0.00 2.85
379 391 1.963338 GCTGCCGGATATGCCAGAC 60.963 63.158 5.05 0.00 35.94 3.51
405 417 5.450550 GGTTTCCTCTTTGACTTGGTTCAAG 60.451 44.000 6.15 6.15 45.85 3.02
421 433 4.513692 GGTTCAAGTTTAAACATTTGGGGC 59.486 41.667 20.06 9.80 0.00 5.80
422 434 5.119694 GTTCAAGTTTAAACATTTGGGGCA 58.880 37.500 20.06 0.00 0.00 5.36
463 475 2.196742 TAGGGGAGAGGAACATGCAT 57.803 50.000 0.00 0.00 0.00 3.96
466 478 1.144503 GGGGAGAGGAACATGCATGAT 59.855 52.381 32.75 22.02 0.00 2.45
468 480 2.158711 GGGAGAGGAACATGCATGATCA 60.159 50.000 32.75 0.00 31.96 2.92
469 481 3.139850 GGAGAGGAACATGCATGATCAG 58.860 50.000 32.75 6.56 31.96 2.90
476 488 6.802608 AGGAACATGCATGATCAGTTATTTG 58.197 36.000 32.75 3.42 31.96 2.32
479 491 6.140303 ACATGCATGATCAGTTATTTGGTC 57.860 37.500 32.75 0.00 0.00 4.02
480 492 5.653330 ACATGCATGATCAGTTATTTGGTCA 59.347 36.000 32.75 0.00 42.04 4.02
487 499 6.295249 TGATCAGTTATTTGGTCAAGTGTCA 58.705 36.000 0.00 0.00 35.36 3.58
490 502 5.527214 TCAGTTATTTGGTCAAGTGTCACTG 59.473 40.000 6.18 1.30 0.00 3.66
494 509 2.325583 TGGTCAAGTGTCACTGGTTC 57.674 50.000 6.18 1.90 0.00 3.62
513 528 9.953565 ACTGGTTCTTGCTAGTTAATAACATTA 57.046 29.630 5.89 0.00 0.00 1.90
543 558 6.829298 TGCCATAGTAGACTATAGCATAGTCC 59.171 42.308 22.18 13.70 44.49 3.85
545 560 6.483974 CCATAGTAGACTATAGCATAGTCCCG 59.516 46.154 22.18 11.28 43.61 5.14
555 570 3.858247 AGCATAGTCCCGAGTGTTTTAC 58.142 45.455 0.00 0.00 0.00 2.01
561 576 4.969484 AGTCCCGAGTGTTTTACAATTCT 58.031 39.130 0.00 0.00 0.00 2.40
563 578 4.753107 GTCCCGAGTGTTTTACAATTCTCA 59.247 41.667 0.00 0.00 0.00 3.27
564 579 5.411669 GTCCCGAGTGTTTTACAATTCTCAT 59.588 40.000 0.00 0.00 0.00 2.90
565 580 5.411361 TCCCGAGTGTTTTACAATTCTCATG 59.589 40.000 0.00 0.00 0.00 3.07
566 581 5.391950 CCCGAGTGTTTTACAATTCTCATGG 60.392 44.000 0.00 0.00 0.00 3.66
568 583 6.307155 CGAGTGTTTTACAATTCTCATGGAC 58.693 40.000 0.00 0.00 0.00 4.02
569 584 6.073276 CGAGTGTTTTACAATTCTCATGGACA 60.073 38.462 0.00 0.00 0.00 4.02
570 585 7.206981 AGTGTTTTACAATTCTCATGGACAG 57.793 36.000 0.00 0.00 0.00 3.51
572 587 5.048083 TGTTTTACAATTCTCATGGACAGCC 60.048 40.000 0.00 0.00 0.00 4.85
573 588 4.574674 TTACAATTCTCATGGACAGCCT 57.425 40.909 0.00 0.00 34.31 4.58
574 589 2.719739 ACAATTCTCATGGACAGCCTG 58.280 47.619 0.00 0.00 34.31 4.85
575 590 2.040813 ACAATTCTCATGGACAGCCTGT 59.959 45.455 0.00 0.00 34.31 4.00
576 591 2.681848 CAATTCTCATGGACAGCCTGTC 59.318 50.000 16.63 16.63 46.23 3.51
583 598 3.052081 GACAGCCTGTCGACCACT 58.948 61.111 14.12 4.60 37.67 4.00
585 600 0.249911 GACAGCCTGTCGACCACTTT 60.250 55.000 14.12 0.32 37.67 2.66
586 601 0.532862 ACAGCCTGTCGACCACTTTG 60.533 55.000 14.12 7.76 0.00 2.77
587 602 1.071471 AGCCTGTCGACCACTTTGG 59.929 57.895 14.12 6.76 45.02 3.28
588 603 1.966451 GCCTGTCGACCACTTTGGG 60.966 63.158 14.12 5.05 43.37 4.12
600 615 4.270008 ACCACTTTGGGTCTATTGTATGC 58.730 43.478 0.00 0.00 43.37 3.14
601 616 4.263727 ACCACTTTGGGTCTATTGTATGCA 60.264 41.667 0.00 0.00 43.37 3.96
602 617 4.336433 CCACTTTGGGTCTATTGTATGCAG 59.664 45.833 0.00 0.00 32.67 4.41
603 618 4.943705 CACTTTGGGTCTATTGTATGCAGT 59.056 41.667 0.00 0.00 0.00 4.40
604 619 5.065218 CACTTTGGGTCTATTGTATGCAGTC 59.935 44.000 0.00 0.00 0.00 3.51
605 620 5.045578 ACTTTGGGTCTATTGTATGCAGTCT 60.046 40.000 0.00 0.00 0.00 3.24
606 621 5.435686 TTGGGTCTATTGTATGCAGTCTT 57.564 39.130 0.00 0.00 0.00 3.01
607 622 5.435686 TGGGTCTATTGTATGCAGTCTTT 57.564 39.130 0.00 0.00 0.00 2.52
608 623 5.428253 TGGGTCTATTGTATGCAGTCTTTC 58.572 41.667 0.00 0.00 0.00 2.62
609 624 4.816925 GGGTCTATTGTATGCAGTCTTTCC 59.183 45.833 0.00 0.00 0.00 3.13
610 625 4.816925 GGTCTATTGTATGCAGTCTTTCCC 59.183 45.833 0.00 0.00 0.00 3.97
611 626 5.396884 GGTCTATTGTATGCAGTCTTTCCCT 60.397 44.000 0.00 0.00 0.00 4.20
612 627 6.183360 GGTCTATTGTATGCAGTCTTTCCCTA 60.183 42.308 0.00 0.00 0.00 3.53
613 628 7.445945 GTCTATTGTATGCAGTCTTTCCCTAT 58.554 38.462 0.00 0.00 0.00 2.57
614 629 8.585881 GTCTATTGTATGCAGTCTTTCCCTATA 58.414 37.037 0.00 0.00 0.00 1.31
615 630 9.326489 TCTATTGTATGCAGTCTTTCCCTATAT 57.674 33.333 0.00 0.00 0.00 0.86
619 634 8.901472 TGTATGCAGTCTTTCCCTATATATCT 57.099 34.615 0.00 0.00 0.00 1.98
620 635 9.990868 TGTATGCAGTCTTTCCCTATATATCTA 57.009 33.333 0.00 0.00 0.00 1.98
622 637 8.901472 ATGCAGTCTTTCCCTATATATCTACA 57.099 34.615 0.00 0.00 0.00 2.74
623 638 8.721133 TGCAGTCTTTCCCTATATATCTACAA 57.279 34.615 0.00 0.00 0.00 2.41
624 639 8.807118 TGCAGTCTTTCCCTATATATCTACAAG 58.193 37.037 0.00 0.00 0.00 3.16
625 640 9.026121 GCAGTCTTTCCCTATATATCTACAAGA 57.974 37.037 0.00 0.00 0.00 3.02
638 653 4.873746 TCTACAAGAGTCTGTTTCCAGG 57.126 45.455 0.00 0.00 39.31 4.45
639 654 4.480115 TCTACAAGAGTCTGTTTCCAGGA 58.520 43.478 0.00 0.00 39.31 3.86
640 655 3.477210 ACAAGAGTCTGTTTCCAGGAC 57.523 47.619 0.00 0.00 39.31 3.85
641 656 3.041946 ACAAGAGTCTGTTTCCAGGACT 58.958 45.455 0.00 0.00 39.31 3.85
642 657 3.456277 ACAAGAGTCTGTTTCCAGGACTT 59.544 43.478 0.00 0.00 39.31 3.01
643 658 3.760580 AGAGTCTGTTTCCAGGACTTG 57.239 47.619 0.00 0.00 39.31 3.16
644 659 3.309296 AGAGTCTGTTTCCAGGACTTGA 58.691 45.455 0.00 0.00 39.31 3.02
645 660 3.711704 AGAGTCTGTTTCCAGGACTTGAA 59.288 43.478 0.00 0.00 39.31 2.69
646 661 3.809905 AGTCTGTTTCCAGGACTTGAAC 58.190 45.455 0.00 0.00 39.31 3.18
647 662 2.879026 GTCTGTTTCCAGGACTTGAACC 59.121 50.000 0.00 0.00 39.31 3.62
648 663 2.777692 TCTGTTTCCAGGACTTGAACCT 59.222 45.455 0.00 0.00 39.31 3.50
654 669 1.884235 CAGGACTTGAACCTGTGACC 58.116 55.000 0.00 0.00 46.71 4.02
655 670 0.393077 AGGACTTGAACCTGTGACCG 59.607 55.000 0.00 0.00 36.30 4.79
656 671 1.228657 GGACTTGAACCTGTGACCGC 61.229 60.000 0.00 0.00 0.00 5.68
657 672 0.531974 GACTTGAACCTGTGACCGCA 60.532 55.000 0.00 0.00 0.00 5.69
658 673 0.108585 ACTTGAACCTGTGACCGCAT 59.891 50.000 0.00 0.00 0.00 4.73
659 674 0.518636 CTTGAACCTGTGACCGCATG 59.481 55.000 0.00 0.00 0.00 4.06
660 675 0.888736 TTGAACCTGTGACCGCATGG 60.889 55.000 0.00 0.00 42.84 3.66
670 685 4.557554 CCGCATGGTCATAAGGCA 57.442 55.556 0.00 0.00 0.00 4.75
671 686 2.324215 CCGCATGGTCATAAGGCAG 58.676 57.895 0.00 0.00 0.00 4.85
672 687 1.650912 CGCATGGTCATAAGGCAGC 59.349 57.895 0.00 0.00 0.00 5.25
673 688 1.096967 CGCATGGTCATAAGGCAGCA 61.097 55.000 0.00 0.00 0.00 4.41
674 689 1.105457 GCATGGTCATAAGGCAGCAA 58.895 50.000 0.00 0.00 0.00 3.91
675 690 1.202336 GCATGGTCATAAGGCAGCAAC 60.202 52.381 0.00 0.00 0.00 4.17
676 691 2.372264 CATGGTCATAAGGCAGCAACT 58.628 47.619 0.00 0.00 0.00 3.16
677 692 2.584835 TGGTCATAAGGCAGCAACTT 57.415 45.000 0.00 0.00 0.00 2.66
678 693 2.875296 TGGTCATAAGGCAGCAACTTT 58.125 42.857 0.00 0.00 0.00 2.66
679 694 4.027674 TGGTCATAAGGCAGCAACTTTA 57.972 40.909 0.00 0.00 0.00 1.85
680 695 3.756434 TGGTCATAAGGCAGCAACTTTAC 59.244 43.478 0.00 0.00 0.00 2.01
681 696 3.128764 GGTCATAAGGCAGCAACTTTACC 59.871 47.826 0.00 0.00 0.00 2.85
682 697 3.756434 GTCATAAGGCAGCAACTTTACCA 59.244 43.478 0.00 0.00 0.00 3.25
683 698 3.756434 TCATAAGGCAGCAACTTTACCAC 59.244 43.478 0.00 0.00 0.00 4.16
684 699 2.364972 AAGGCAGCAACTTTACCACT 57.635 45.000 0.00 0.00 0.00 4.00
685 700 1.609208 AGGCAGCAACTTTACCACTG 58.391 50.000 0.00 0.00 0.00 3.66
686 701 1.133792 AGGCAGCAACTTTACCACTGT 60.134 47.619 0.00 0.00 0.00 3.55
687 702 1.001378 GGCAGCAACTTTACCACTGTG 60.001 52.381 0.00 0.00 0.00 3.66
688 703 1.600413 GCAGCAACTTTACCACTGTGC 60.600 52.381 1.29 0.00 0.00 4.57
689 704 1.001378 CAGCAACTTTACCACTGTGCC 60.001 52.381 1.29 0.00 0.00 5.01
690 705 1.028905 GCAACTTTACCACTGTGCCA 58.971 50.000 1.29 0.00 0.00 4.92
691 706 1.407258 GCAACTTTACCACTGTGCCAA 59.593 47.619 1.29 0.00 0.00 4.52
692 707 2.543653 GCAACTTTACCACTGTGCCAAG 60.544 50.000 1.29 6.33 0.00 3.61
693 708 1.318576 ACTTTACCACTGTGCCAAGC 58.681 50.000 1.29 0.00 0.00 4.01
694 709 0.598065 CTTTACCACTGTGCCAAGCC 59.402 55.000 1.29 0.00 0.00 4.35
695 710 0.184933 TTTACCACTGTGCCAAGCCT 59.815 50.000 1.29 0.00 0.00 4.58
696 711 0.250727 TTACCACTGTGCCAAGCCTC 60.251 55.000 1.29 0.00 0.00 4.70
697 712 2.124507 TACCACTGTGCCAAGCCTCC 62.125 60.000 1.29 0.00 0.00 4.30
698 713 2.674380 CACTGTGCCAAGCCTCCC 60.674 66.667 0.00 0.00 0.00 4.30
699 714 3.971702 ACTGTGCCAAGCCTCCCC 61.972 66.667 0.00 0.00 0.00 4.81
700 715 3.655211 CTGTGCCAAGCCTCCCCT 61.655 66.667 0.00 0.00 0.00 4.79
701 716 3.185203 TGTGCCAAGCCTCCCCTT 61.185 61.111 0.00 0.00 0.00 3.95
702 717 2.361737 GTGCCAAGCCTCCCCTTC 60.362 66.667 0.00 0.00 0.00 3.46
703 718 3.661648 TGCCAAGCCTCCCCTTCC 61.662 66.667 0.00 0.00 0.00 3.46
704 719 3.342477 GCCAAGCCTCCCCTTCCT 61.342 66.667 0.00 0.00 0.00 3.36
705 720 2.001269 GCCAAGCCTCCCCTTCCTA 61.001 63.158 0.00 0.00 0.00 2.94
706 721 1.356494 GCCAAGCCTCCCCTTCCTAT 61.356 60.000 0.00 0.00 0.00 2.57
707 722 1.226311 CCAAGCCTCCCCTTCCTATT 58.774 55.000 0.00 0.00 0.00 1.73
708 723 1.570979 CCAAGCCTCCCCTTCCTATTT 59.429 52.381 0.00 0.00 0.00 1.40
709 724 2.023984 CCAAGCCTCCCCTTCCTATTTT 60.024 50.000 0.00 0.00 0.00 1.82
710 725 3.566553 CCAAGCCTCCCCTTCCTATTTTT 60.567 47.826 0.00 0.00 0.00 1.94
711 726 3.388552 AGCCTCCCCTTCCTATTTTTG 57.611 47.619 0.00 0.00 0.00 2.44
714 729 3.838317 GCCTCCCCTTCCTATTTTTGTTT 59.162 43.478 0.00 0.00 0.00 2.83
722 737 7.260603 CCCTTCCTATTTTTGTTTGCTATCTG 58.739 38.462 0.00 0.00 0.00 2.90
740 755 9.784376 TGCTATCTGGGTTAGAATTATATAGGT 57.216 33.333 0.00 0.00 39.30 3.08
782 797 5.712917 ACTTTAGGCATATTTCACGGGAAAA 59.287 36.000 18.20 7.18 45.52 2.29
785 800 5.675684 AGGCATATTTCACGGGAAAATTT 57.324 34.783 18.20 3.19 45.52 1.82
787 802 5.874261 AGGCATATTTCACGGGAAAATTTTG 59.126 36.000 18.20 12.72 45.52 2.44
841 874 8.027189 AGAGTTTTAAAGTGTTTGGTGAGTTTC 58.973 33.333 0.00 0.00 0.00 2.78
851 885 5.694006 TGTTTGGTGAGTTTCAAGTGTTTTG 59.306 36.000 0.00 0.00 0.00 2.44
855 889 4.241681 GTGAGTTTCAAGTGTTTTGGCAA 58.758 39.130 0.00 0.00 0.00 4.52
862 896 2.298411 AGTGTTTTGGCAAGTGCTTG 57.702 45.000 7.51 7.51 43.14 4.01
870 904 0.598065 GGCAAGTGCTTGGTAGTTGG 59.402 55.000 13.07 0.00 40.74 3.77
882 916 6.494491 TGCTTGGTAGTTGGTAGTAGTAGAAA 59.506 38.462 0.00 0.00 0.00 2.52
949 990 7.090173 GTCATTCTGATAATACTGAGGAGAGC 58.910 42.308 0.00 0.00 0.00 4.09
1087 1130 2.519302 AGGCCAGCGTGCAGTTTT 60.519 55.556 5.01 0.00 0.00 2.43
1147 1190 0.317479 GGGTCGTGTTGCTAGTGAGT 59.683 55.000 0.00 0.00 0.00 3.41
1351 1396 5.966742 GGTTAAAAAGCCAAGATCTCTGT 57.033 39.130 0.00 0.00 0.00 3.41
1366 1411 1.266989 CTCTGTTTTCCTTCAACCGGC 59.733 52.381 0.00 0.00 0.00 6.13
1446 1491 3.740115 CCGATGGGTTACCCTGATAAAG 58.260 50.000 22.29 5.91 45.70 1.85
1515 1560 6.520272 AGATCTAGCAAATATTTCACGCTCT 58.480 36.000 13.15 4.45 34.18 4.09
1583 1628 0.890996 GAGCAGTGGTTGGAAGGTGG 60.891 60.000 0.00 0.00 0.00 4.61
1596 1641 1.539827 GAAGGTGGTGATTTGGAACGG 59.460 52.381 0.00 0.00 0.00 4.44
1609 1654 1.899814 TGGAACGGTCTGTGATAGCTT 59.100 47.619 0.00 0.00 0.00 3.74
1666 1711 5.772825 AGCTGCAAATGTTTACAAGAAGA 57.227 34.783 1.02 0.00 0.00 2.87
1675 1720 5.228945 TGTTTACAAGAAGAAGAGGGAGG 57.771 43.478 0.00 0.00 0.00 4.30
1704 1749 0.535335 GTCACGCTTGGGTCTCCATA 59.465 55.000 0.00 0.00 43.63 2.74
1747 1792 8.824159 AGAACATGTCTTGAGGAATATAATCG 57.176 34.615 0.00 0.00 29.66 3.34
1807 1852 1.402968 CTGTGGCTATGGACATTGTGC 59.597 52.381 0.72 0.72 30.65 4.57
1828 1873 2.421619 GCCTTGAAGAGACACTGAAGG 58.578 52.381 0.00 0.00 39.84 3.46
1842 1887 3.439476 CACTGAAGGAATTTCTGGAGCAG 59.561 47.826 0.00 0.00 38.61 4.24
1860 1905 3.812053 AGCAGCGGAAGTATTTGATCATC 59.188 43.478 0.00 0.00 0.00 2.92
1863 1908 5.466728 GCAGCGGAAGTATTTGATCATCTTA 59.533 40.000 0.00 0.00 0.00 2.10
1921 1966 6.808321 TGTCTAGGGTGCTTACTCATAATT 57.192 37.500 0.00 0.00 0.00 1.40
1929 1974 7.516209 AGGGTGCTTACTCATAATTATAAGGGA 59.484 37.037 0.66 0.00 0.00 4.20
1959 2004 3.074390 TGATCATCACAACAAGGGAAGGT 59.926 43.478 0.00 0.00 29.94 3.50
1971 2016 1.503542 GGAAGGTGATGTTGCTGCG 59.496 57.895 0.00 0.00 0.00 5.18
1983 2028 4.853050 GCTGCGCATGCCTCTCCT 62.853 66.667 12.24 0.00 41.78 3.69
1984 2029 2.588314 CTGCGCATGCCTCTCCTC 60.588 66.667 12.24 0.00 41.78 3.71
1989 2034 1.227205 GCATGCCTCTCCTCGACAG 60.227 63.158 6.36 0.00 0.00 3.51
1997 2042 3.024547 CCTCTCCTCGACAGACCATAAA 58.975 50.000 0.00 0.00 0.00 1.40
2006 2051 5.556915 TCGACAGACCATAAAAATGGAAGT 58.443 37.500 11.28 6.21 44.39 3.01
2031 2076 1.272092 CCAGAAGACAAGGCATGGGAA 60.272 52.381 0.00 0.00 0.00 3.97
2109 2154 3.903090 TGAAGCCATTGTCCAAGGAAATT 59.097 39.130 0.00 0.00 0.00 1.82
2165 2210 2.037251 TGTCAGTTGGTAGCCTCTTGTC 59.963 50.000 0.00 0.00 0.00 3.18
2177 2222 2.865670 GCCTCTTGTCTGTGTGTGAGAG 60.866 54.545 0.00 0.00 0.00 3.20
2181 2226 2.492019 TGTCTGTGTGTGAGAGAACG 57.508 50.000 0.00 0.00 0.00 3.95
2192 2237 3.071023 TGTGAGAGAACGGTGGAAGAATT 59.929 43.478 0.00 0.00 0.00 2.17
2295 2340 3.686726 GCTTCATCTACCTTCCAACACAG 59.313 47.826 0.00 0.00 0.00 3.66
2310 2355 6.982852 TCCAACACAGTTGAAAAGTTGTTTA 58.017 32.000 11.19 0.00 38.24 2.01
2337 2382 6.830324 TGTATTGCAGCCTATTTTCAGAAGAT 59.170 34.615 0.00 0.00 0.00 2.40
2341 2386 8.978874 TTGCAGCCTATTTTCAGAAGATTATA 57.021 30.769 0.00 0.00 0.00 0.98
2561 2606 2.703536 TGGACTTGTGCCAGAAGAACTA 59.296 45.455 8.78 0.00 0.00 2.24
2594 2639 5.698741 ACTTATGATGGTGAATGTGAGGA 57.301 39.130 0.00 0.00 0.00 3.71
2609 2657 3.096092 GTGAGGAGTCTCTTCAGGATGT 58.904 50.000 14.55 0.00 40.58 3.06
2613 2661 2.359531 GGAGTCTCTTCAGGATGTACGG 59.640 54.545 0.00 0.00 37.40 4.02
2620 2668 1.107945 TCAGGATGTACGGCGATTGA 58.892 50.000 16.62 3.34 37.40 2.57
2628 2676 2.034179 TGTACGGCGATTGATACTCCAG 59.966 50.000 16.62 0.00 0.00 3.86
2749 2803 9.553064 CTTTGCTATGTAAGGAGTCAAGATATT 57.447 33.333 0.00 0.00 0.00 1.28
2779 2833 6.043411 GTGCTAGAATTAAGTGGTCTACCTG 58.957 44.000 0.00 0.00 36.82 4.00
2835 2889 2.818751 ATCTCCGCCATTTGGGTTTA 57.181 45.000 0.00 0.00 39.65 2.01
2847 2901 2.547299 TGGGTTTACGTGGTTCGAAT 57.453 45.000 0.00 0.00 42.86 3.34
2869 2923 3.181440 TGTGAAGATGCTCCCAAAGTCTT 60.181 43.478 0.00 0.00 32.23 3.01
2918 2972 6.127310 ACACTGGACCTTTGTAGATCTGATAC 60.127 42.308 5.18 0.00 0.00 2.24
2985 3039 8.540388 AGGCACTTATTTGTTGAGAGAGTAATA 58.460 33.333 0.00 0.00 27.25 0.98
2991 3045 9.967346 TTATTTGTTGAGAGAGTAATAGATCCG 57.033 33.333 0.00 0.00 0.00 4.18
3024 3078 0.602060 TTACATGTCGCGGTGGTGTA 59.398 50.000 6.13 8.28 0.00 2.90
3054 3108 5.127682 CCCCAATGGTCTTGGAAATCTAAAG 59.872 44.000 5.57 0.00 42.06 1.85
3057 3111 7.124750 CCCAATGGTCTTGGAAATCTAAAGAAT 59.875 37.037 5.57 0.00 42.06 2.40
3092 3146 2.522185 AGCATTGGAAGCACAAGATGT 58.478 42.857 0.00 0.00 33.23 3.06
3114 3168 4.816925 GTGTCTCTTATGCATTTAGGGGAC 59.183 45.833 3.54 4.44 0.00 4.46
3165 3219 3.879892 GGAATGTGAAGGGAATCTACTGC 59.120 47.826 0.00 0.00 0.00 4.40
3209 3263 4.940046 AGTTCAGATGCAGTATTTGTCCTG 59.060 41.667 0.00 0.00 0.00 3.86
3215 3269 3.544684 TGCAGTATTTGTCCTGCCTATG 58.455 45.455 8.95 0.00 41.63 2.23
3228 3282 1.315257 GCCTATGTGTGGGTGCAAGG 61.315 60.000 0.00 0.00 0.00 3.61
3260 3314 4.202451 TGAGGTTCTCATGTTGAATGTCCA 60.202 41.667 7.05 2.81 35.39 4.02
3267 3321 0.888736 TGTTGAATGTCCACCTGCCG 60.889 55.000 0.00 0.00 0.00 5.69
3271 3325 1.635663 GAATGTCCACCTGCCGAACG 61.636 60.000 0.00 0.00 0.00 3.95
3384 3438 7.423844 TCAATTGTCTCTATACTGGTCACAT 57.576 36.000 5.13 0.00 0.00 3.21
3616 3670 1.986757 AGCAGCATGACGGAGGTCT 60.987 57.895 0.00 0.00 43.79 3.85
3721 3775 6.264832 CAATGTTTTGTACTTGAAGTGCAGA 58.735 36.000 15.33 9.21 41.66 4.26
3750 3804 1.384525 ATTCTCTCCGAGACTGACCG 58.615 55.000 0.00 0.00 38.51 4.79
3751 3805 1.306642 TTCTCTCCGAGACTGACCGC 61.307 60.000 0.00 0.00 38.51 5.68
3753 3807 3.062466 CTCCGAGACTGACCGCCA 61.062 66.667 0.00 0.00 0.00 5.69
3754 3808 2.362503 TCCGAGACTGACCGCCAT 60.363 61.111 0.00 0.00 0.00 4.40
3755 3809 2.202797 CCGAGACTGACCGCCATG 60.203 66.667 0.00 0.00 0.00 3.66
3782 3842 2.026636 TGGCCAGGAAATGTGTAGGTAC 60.027 50.000 0.00 0.00 0.00 3.34
3793 3862 4.627611 TGTGTAGGTACGCACTAATCTC 57.372 45.455 12.71 0.00 41.31 2.75
3811 3880 1.482593 CTCCCAACTAGCCAGTACCAG 59.517 57.143 0.00 0.00 33.48 4.00
3814 3883 2.835764 CCCAACTAGCCAGTACCAGTAA 59.164 50.000 0.00 0.00 33.48 2.24
3823 3892 3.385115 CCAGTACCAGTAATTCCTCCCT 58.615 50.000 0.00 0.00 0.00 4.20
3838 3907 7.790782 ATTCCTCCCTCATCTCTAATCTTAC 57.209 40.000 0.00 0.00 0.00 2.34
3841 3910 7.463431 TCCTCCCTCATCTCTAATCTTACTAC 58.537 42.308 0.00 0.00 0.00 2.73
3842 3911 6.373216 CCTCCCTCATCTCTAATCTTACTACG 59.627 46.154 0.00 0.00 0.00 3.51
3845 3914 7.228906 TCCCTCATCTCTAATCTTACTACGTTG 59.771 40.741 0.00 0.00 0.00 4.10
3850 3919 9.440784 CATCTCTAATCTTACTACGTTGAAGAC 57.559 37.037 3.44 0.00 32.25 3.01
3859 3928 2.585263 CGTTGAAGACGTTGACGGT 58.415 52.632 8.52 0.00 46.49 4.83
3860 3929 0.228742 CGTTGAAGACGTTGACGGTG 59.771 55.000 8.52 0.00 46.49 4.94
3861 3930 1.563111 GTTGAAGACGTTGACGGTGA 58.437 50.000 8.52 0.00 44.95 4.02
3862 3931 2.132762 GTTGAAGACGTTGACGGTGAT 58.867 47.619 8.52 0.00 44.95 3.06
3863 3932 3.311106 GTTGAAGACGTTGACGGTGATA 58.689 45.455 8.52 0.00 44.95 2.15
3864 3933 3.861276 TGAAGACGTTGACGGTGATAT 57.139 42.857 8.52 0.00 44.95 1.63
3865 3934 3.507786 TGAAGACGTTGACGGTGATATG 58.492 45.455 8.52 0.00 44.95 1.78
3866 3935 3.057104 TGAAGACGTTGACGGTGATATGT 60.057 43.478 8.52 0.00 44.95 2.29
3867 3936 3.587797 AGACGTTGACGGTGATATGTT 57.412 42.857 8.52 0.00 44.95 2.71
3868 3937 3.250744 AGACGTTGACGGTGATATGTTG 58.749 45.455 8.52 0.00 44.95 3.33
3869 3938 2.991190 GACGTTGACGGTGATATGTTGT 59.009 45.455 8.52 0.00 44.95 3.32
3870 3939 3.395639 ACGTTGACGGTGATATGTTGTT 58.604 40.909 8.52 0.00 44.95 2.83
3871 3940 3.185594 ACGTTGACGGTGATATGTTGTTG 59.814 43.478 8.52 0.00 44.95 3.33
3872 3941 3.424302 CGTTGACGGTGATATGTTGTTGG 60.424 47.826 0.00 0.00 35.37 3.77
3873 3942 3.410631 TGACGGTGATATGTTGTTGGT 57.589 42.857 0.00 0.00 0.00 3.67
3874 3943 3.745799 TGACGGTGATATGTTGTTGGTT 58.254 40.909 0.00 0.00 0.00 3.67
3875 3944 4.895961 TGACGGTGATATGTTGTTGGTTA 58.104 39.130 0.00 0.00 0.00 2.85
3876 3945 5.492895 TGACGGTGATATGTTGTTGGTTAT 58.507 37.500 0.00 0.00 0.00 1.89
4067 4138 6.613755 AAAACAATGCTTACTGTACGACTT 57.386 33.333 0.00 0.00 0.00 3.01
4135 4211 5.171476 TGTTTCTCGAATTAAGGAGCTCTG 58.829 41.667 14.64 0.00 0.00 3.35
4147 4224 4.453093 GCTCTGTGCTCCCTATGC 57.547 61.111 0.00 0.00 38.95 3.14
4163 4240 6.122277 TCCCTATGCTTATTTCAGAAACTGG 58.878 40.000 0.00 0.00 31.51 4.00
4184 4261 3.670055 GGTGAACGCATGATTTGTTTCAG 59.330 43.478 0.00 0.00 33.07 3.02
4199 4276 8.833231 ATTTGTTTCAGCGCTATATATGTACT 57.167 30.769 10.99 0.00 0.00 2.73
4309 4386 4.608269 TGCTGGGGTATTCATTTTCATCA 58.392 39.130 0.00 0.00 0.00 3.07
4341 4424 3.157087 ACCTGTTGCCTTTAGTTGATGG 58.843 45.455 0.00 0.00 0.00 3.51
4361 4444 3.181491 TGGTGTTGTAACTTGCTTTGCTC 60.181 43.478 0.00 0.00 0.00 4.26
4362 4445 3.066760 GGTGTTGTAACTTGCTTTGCTCT 59.933 43.478 0.00 0.00 0.00 4.09
4363 4446 4.037690 GTGTTGTAACTTGCTTTGCTCTG 58.962 43.478 0.00 0.00 0.00 3.35
4364 4447 3.944650 TGTTGTAACTTGCTTTGCTCTGA 59.055 39.130 0.00 0.00 0.00 3.27
4366 4449 4.552166 TGTAACTTGCTTTGCTCTGAAC 57.448 40.909 0.00 0.00 0.00 3.18
4367 4450 3.315191 TGTAACTTGCTTTGCTCTGAACC 59.685 43.478 0.00 0.00 0.00 3.62
4368 4451 2.355010 ACTTGCTTTGCTCTGAACCT 57.645 45.000 0.00 0.00 0.00 3.50
4369 4452 3.492102 ACTTGCTTTGCTCTGAACCTA 57.508 42.857 0.00 0.00 0.00 3.08
4370 4453 4.026356 ACTTGCTTTGCTCTGAACCTAT 57.974 40.909 0.00 0.00 0.00 2.57
4371 4454 4.401925 ACTTGCTTTGCTCTGAACCTATT 58.598 39.130 0.00 0.00 0.00 1.73
4374 4457 4.397420 TGCTTTGCTCTGAACCTATTTCA 58.603 39.130 0.00 0.00 42.26 2.69
4398 4481 4.209080 GCTGTGGCTGTTGAATAAAAACAC 59.791 41.667 0.00 0.00 34.02 3.32
4399 4482 5.590530 TGTGGCTGTTGAATAAAAACACT 57.409 34.783 0.00 0.00 34.02 3.55
4402 4485 5.234116 GTGGCTGTTGAATAAAAACACTTGG 59.766 40.000 0.00 0.00 34.02 3.61
4419 4502 8.816640 AACACTTGGTTTGTGATTCATAATTC 57.183 30.769 0.00 0.00 35.82 2.17
4420 4503 8.181904 ACACTTGGTTTGTGATTCATAATTCT 57.818 30.769 0.00 0.00 38.65 2.40
4421 4504 8.084073 ACACTTGGTTTGTGATTCATAATTCTG 58.916 33.333 0.00 0.00 38.65 3.02
4422 4505 7.543172 CACTTGGTTTGTGATTCATAATTCTGG 59.457 37.037 0.00 0.00 37.60 3.86
4423 4506 5.964758 TGGTTTGTGATTCATAATTCTGGC 58.035 37.500 0.00 0.00 0.00 4.85
4424 4507 5.716228 TGGTTTGTGATTCATAATTCTGGCT 59.284 36.000 0.00 0.00 0.00 4.75
4425 4508 6.127647 TGGTTTGTGATTCATAATTCTGGCTC 60.128 38.462 0.00 0.00 0.00 4.70
4426 4509 6.127647 GGTTTGTGATTCATAATTCTGGCTCA 60.128 38.462 0.00 0.00 0.00 4.26
4427 4510 6.688637 TTGTGATTCATAATTCTGGCTCAG 57.311 37.500 0.00 0.00 0.00 3.35
4428 4511 5.128205 TGTGATTCATAATTCTGGCTCAGG 58.872 41.667 2.86 0.00 31.51 3.86
4429 4512 5.128919 GTGATTCATAATTCTGGCTCAGGT 58.871 41.667 2.86 0.00 31.51 4.00
4430 4513 6.126796 TGTGATTCATAATTCTGGCTCAGGTA 60.127 38.462 2.86 0.00 31.51 3.08
4431 4514 6.939163 GTGATTCATAATTCTGGCTCAGGTAT 59.061 38.462 2.86 0.00 31.51 2.73
4432 4515 6.938596 TGATTCATAATTCTGGCTCAGGTATG 59.061 38.462 2.86 8.01 31.51 2.39
4433 4516 4.645535 TCATAATTCTGGCTCAGGTATGC 58.354 43.478 2.86 0.00 31.51 3.14
4434 4517 4.102996 TCATAATTCTGGCTCAGGTATGCA 59.897 41.667 0.00 0.00 31.51 3.96
4435 4518 3.589951 AATTCTGGCTCAGGTATGCAT 57.410 42.857 3.79 3.79 31.51 3.96
4436 4519 3.589951 ATTCTGGCTCAGGTATGCATT 57.410 42.857 3.54 0.00 31.51 3.56
4437 4520 3.370840 TTCTGGCTCAGGTATGCATTT 57.629 42.857 3.54 0.00 31.51 2.32
4438 4521 3.370840 TCTGGCTCAGGTATGCATTTT 57.629 42.857 3.54 0.00 31.51 1.82
4439 4522 3.282021 TCTGGCTCAGGTATGCATTTTC 58.718 45.455 3.54 0.00 31.51 2.29
4440 4523 2.016318 TGGCTCAGGTATGCATTTTCG 58.984 47.619 3.54 0.00 0.00 3.46
4441 4524 1.268743 GGCTCAGGTATGCATTTTCGC 60.269 52.381 3.54 0.58 0.00 4.70
4442 4525 1.268743 GCTCAGGTATGCATTTTCGCC 60.269 52.381 3.54 0.08 0.00 5.54
4443 4526 1.003545 CTCAGGTATGCATTTTCGCCG 60.004 52.381 3.54 0.00 0.00 6.46
4444 4527 0.732571 CAGGTATGCATTTTCGCCGT 59.267 50.000 3.54 0.00 0.00 5.68
4445 4528 1.014352 AGGTATGCATTTTCGCCGTC 58.986 50.000 3.54 0.00 0.00 4.79
4446 4529 0.028902 GGTATGCATTTTCGCCGTCC 59.971 55.000 3.54 0.00 0.00 4.79
4447 4530 0.028902 GTATGCATTTTCGCCGTCCC 59.971 55.000 3.54 0.00 0.00 4.46
4448 4531 1.433053 TATGCATTTTCGCCGTCCCG 61.433 55.000 3.54 0.00 0.00 5.14
4449 4532 4.829518 GCATTTTCGCCGTCCCGC 62.830 66.667 0.00 0.00 0.00 6.13
4460 4543 4.078516 GTCCCGCGGTTACTGCCT 62.079 66.667 26.12 0.00 0.00 4.75
4461 4544 3.315949 TCCCGCGGTTACTGCCTT 61.316 61.111 26.12 0.00 0.00 4.35
4462 4545 2.359478 CCCGCGGTTACTGCCTTT 60.359 61.111 26.12 0.00 0.00 3.11
4463 4546 1.078988 CCCGCGGTTACTGCCTTTA 60.079 57.895 26.12 0.00 0.00 1.85
4464 4547 1.087771 CCCGCGGTTACTGCCTTTAG 61.088 60.000 26.12 0.00 0.00 1.85
4465 4548 1.702491 CCGCGGTTACTGCCTTTAGC 61.702 60.000 19.50 0.00 44.14 3.09
4466 4549 0.739813 CGCGGTTACTGCCTTTAGCT 60.740 55.000 10.86 0.00 44.23 3.32
4467 4550 0.727398 GCGGTTACTGCCTTTAGCTG 59.273 55.000 4.57 0.00 44.23 4.24
4468 4551 1.674817 GCGGTTACTGCCTTTAGCTGA 60.675 52.381 4.57 0.00 42.76 4.26
4469 4552 2.906354 CGGTTACTGCCTTTAGCTGAT 58.094 47.619 0.00 0.00 42.76 2.90
4470 4553 2.609459 CGGTTACTGCCTTTAGCTGATG 59.391 50.000 0.00 0.00 42.76 3.07
4531 4616 1.066286 CAGCTAGCCTTGCTCTGTTCT 60.066 52.381 12.13 0.00 40.44 3.01
4540 4625 3.251972 CCTTGCTCTGTTCTTTGGTTCTC 59.748 47.826 0.00 0.00 0.00 2.87
4551 4636 6.098124 TGTTCTTTGGTTCTCATTTTGGACAT 59.902 34.615 0.00 0.00 0.00 3.06
4560 4645 0.602562 ATTTTGGACATGTGGGCACG 59.397 50.000 1.15 0.00 0.00 5.34
4574 4659 1.206371 GGGCACGCTACTTCCTTTCTA 59.794 52.381 0.00 0.00 0.00 2.10
4611 4696 4.604843 TTTCTTGAGCGATGCATACTTG 57.395 40.909 0.00 0.00 0.00 3.16
4641 4728 9.013229 GTTTACTTATGGATCATCATGCCAATA 57.987 33.333 0.00 0.00 34.95 1.90
4658 4745 4.708177 CCAATACTGTACATGCTAAGGCT 58.292 43.478 0.00 0.00 39.59 4.58
4691 4778 9.733556 AGTGTACTTGTGTCATTAATTTCCATA 57.266 29.630 0.00 0.00 0.00 2.74
4722 4809 3.422655 GCAATCGACGGGTTCAATTAAC 58.577 45.455 0.00 0.00 37.36 2.01
4733 4820 6.153067 CGGGTTCAATTAACATGCAGTTTTA 58.847 36.000 6.82 0.00 41.64 1.52
4737 4824 7.439655 GGTTCAATTAACATGCAGTTTTACCAA 59.560 33.333 6.82 0.00 41.64 3.67
4739 4826 7.151308 TCAATTAACATGCAGTTTTACCAAGG 58.849 34.615 6.82 0.00 41.64 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.477700 TGCCAGGCACAAGATATTTGC 59.522 47.619 11.22 0.00 31.71 3.68
19 20 3.872511 TTGCCAGGCACAAGATATTTG 57.127 42.857 15.89 0.00 38.71 2.32
20 21 5.425196 AATTTGCCAGGCACAAGATATTT 57.575 34.783 15.89 0.00 38.71 1.40
21 22 5.046448 TGAAATTTGCCAGGCACAAGATATT 60.046 36.000 15.89 4.58 38.71 1.28
22 23 4.467082 TGAAATTTGCCAGGCACAAGATAT 59.533 37.500 15.89 0.00 38.71 1.63
23 24 3.831333 TGAAATTTGCCAGGCACAAGATA 59.169 39.130 15.89 0.00 38.71 1.98
24 25 2.633967 TGAAATTTGCCAGGCACAAGAT 59.366 40.909 15.89 3.15 38.71 2.40
25 26 2.037901 TGAAATTTGCCAGGCACAAGA 58.962 42.857 15.89 0.00 38.71 3.02
26 27 2.529780 TGAAATTTGCCAGGCACAAG 57.470 45.000 15.89 0.00 38.71 3.16
27 28 4.505808 CATATGAAATTTGCCAGGCACAA 58.494 39.130 15.89 12.40 38.71 3.33
28 29 3.679361 GCATATGAAATTTGCCAGGCACA 60.679 43.478 15.89 8.63 44.12 4.57
29 30 2.867975 GCATATGAAATTTGCCAGGCAC 59.132 45.455 15.89 2.20 44.12 5.01
30 31 3.182341 GCATATGAAATTTGCCAGGCA 57.818 42.857 11.22 11.22 44.12 4.75
70 72 6.760770 ACACAACAGGAATGTTTGTTTTATGG 59.239 34.615 0.00 0.00 35.46 2.74
87 89 2.564504 TCAGGAGATCCTCACACAACAG 59.435 50.000 0.00 0.00 46.65 3.16
102 104 2.681848 GCCATCATGTTCAGTTCAGGAG 59.318 50.000 0.00 0.00 0.00 3.69
110 112 5.902613 TTAAAAGGAGCCATCATGTTCAG 57.097 39.130 0.00 0.00 0.00 3.02
115 117 5.839621 CTCCAATTAAAAGGAGCCATCATG 58.160 41.667 12.11 0.00 44.37 3.07
149 160 9.056799 TCAGGCAAATCAATATATACTCCCATA 57.943 33.333 0.00 0.00 0.00 2.74
205 216 9.844790 TTGTAGCACAATCAAGAAATGAATAAG 57.155 29.630 0.00 0.00 42.54 1.73
224 235 6.769512 AGATACAAGAAGGAAAGTTGTAGCA 58.230 36.000 11.10 0.00 42.70 3.49
251 263 7.381408 GGGAAACAAATAGCTAAAGTTGTTGAC 59.619 37.037 23.42 20.26 41.94 3.18
334 346 5.645497 GCCAATATGCCTATTCTACTTCCAG 59.355 44.000 0.00 0.00 0.00 3.86
348 360 4.744316 GCAGCTTGCCAATATGCC 57.256 55.556 3.32 0.00 37.42 4.40
369 381 3.118531 AGAGGAAACCAGTCTGGCATAT 58.881 45.455 19.40 2.37 42.67 1.78
379 391 3.555966 ACCAAGTCAAAGAGGAAACCAG 58.444 45.455 0.00 0.00 0.00 4.00
405 417 7.229707 AGGTTAAAATGCCCCAAATGTTTAAAC 59.770 33.333 11.54 11.54 31.39 2.01
409 421 5.317600 AGGTTAAAATGCCCCAAATGTTT 57.682 34.783 0.00 0.00 0.00 2.83
449 461 3.806380 ACTGATCATGCATGTTCCTCTC 58.194 45.455 27.11 15.78 0.00 3.20
454 466 6.567050 ACCAAATAACTGATCATGCATGTTC 58.433 36.000 25.43 25.03 0.00 3.18
460 472 6.032094 CACTTGACCAAATAACTGATCATGC 58.968 40.000 0.00 0.00 0.00 4.06
463 475 6.204688 GTGACACTTGACCAAATAACTGATCA 59.795 38.462 0.00 0.00 0.00 2.92
466 478 5.527214 CAGTGACACTTGACCAAATAACTGA 59.473 40.000 5.04 0.00 34.62 3.41
468 480 4.821805 CCAGTGACACTTGACCAAATAACT 59.178 41.667 5.04 0.00 0.00 2.24
469 481 4.578928 ACCAGTGACACTTGACCAAATAAC 59.421 41.667 13.31 0.00 0.00 1.89
476 488 2.614057 CAAGAACCAGTGACACTTGACC 59.386 50.000 13.31 4.73 39.84 4.02
479 491 2.292267 AGCAAGAACCAGTGACACTTG 58.708 47.619 5.04 5.11 40.24 3.16
480 492 2.717639 AGCAAGAACCAGTGACACTT 57.282 45.000 5.04 0.00 0.00 3.16
487 499 8.863872 AATGTTATTAACTAGCAAGAACCAGT 57.136 30.769 7.99 0.38 0.00 4.00
527 542 4.202482 ACACTCGGGACTATGCTATAGTCT 60.202 45.833 23.58 10.37 42.54 3.24
538 553 6.105397 AGAATTGTAAAACACTCGGGACTA 57.895 37.500 0.00 0.00 0.00 2.59
543 558 5.411361 TCCATGAGAATTGTAAAACACTCGG 59.589 40.000 0.00 0.00 0.00 4.63
545 560 7.202016 TGTCCATGAGAATTGTAAAACACTC 57.798 36.000 0.00 0.00 0.00 3.51
555 570 2.681848 GACAGGCTGTCCATGAGAATTG 59.318 50.000 32.55 0.00 41.37 2.32
561 576 1.591703 GTCGACAGGCTGTCCATGA 59.408 57.895 35.01 25.55 44.20 3.07
563 578 1.913262 TGGTCGACAGGCTGTCCAT 60.913 57.895 35.01 8.62 44.20 3.41
564 579 2.523168 TGGTCGACAGGCTGTCCA 60.523 61.111 35.01 27.25 44.20 4.02
565 580 2.048127 GTGGTCGACAGGCTGTCC 60.048 66.667 35.01 25.19 44.20 4.02
566 581 0.249911 AAAGTGGTCGACAGGCTGTC 60.250 55.000 32.72 32.72 43.65 3.51
568 583 1.230635 CCAAAGTGGTCGACAGGCTG 61.231 60.000 18.91 14.16 31.35 4.85
569 584 1.071471 CCAAAGTGGTCGACAGGCT 59.929 57.895 18.91 8.84 31.35 4.58
570 585 1.966451 CCCAAAGTGGTCGACAGGC 60.966 63.158 18.91 6.52 35.17 4.85
572 587 2.914379 GACCCAAAGTGGTCGACAG 58.086 57.895 18.91 0.00 44.98 3.51
579 594 4.269183 TGCATACAATAGACCCAAAGTGG 58.731 43.478 0.00 0.00 37.25 4.00
580 595 4.943705 ACTGCATACAATAGACCCAAAGTG 59.056 41.667 0.00 0.00 0.00 3.16
582 597 5.431765 AGACTGCATACAATAGACCCAAAG 58.568 41.667 0.00 0.00 0.00 2.77
583 598 5.435686 AGACTGCATACAATAGACCCAAA 57.564 39.130 0.00 0.00 0.00 3.28
585 600 5.428253 GAAAGACTGCATACAATAGACCCA 58.572 41.667 0.00 0.00 0.00 4.51
586 601 4.816925 GGAAAGACTGCATACAATAGACCC 59.183 45.833 0.00 0.00 0.00 4.46
587 602 4.816925 GGGAAAGACTGCATACAATAGACC 59.183 45.833 0.00 0.00 0.00 3.85
588 603 5.675538 AGGGAAAGACTGCATACAATAGAC 58.324 41.667 0.00 0.00 0.00 2.59
593 608 9.326489 AGATATATAGGGAAAGACTGCATACAA 57.674 33.333 0.00 0.00 0.00 2.41
594 609 8.901472 AGATATATAGGGAAAGACTGCATACA 57.099 34.615 0.00 0.00 0.00 2.29
596 611 9.990868 TGTAGATATATAGGGAAAGACTGCATA 57.009 33.333 0.00 0.00 0.00 3.14
597 612 8.901472 TGTAGATATATAGGGAAAGACTGCAT 57.099 34.615 0.00 0.00 0.00 3.96
598 613 8.721133 TTGTAGATATATAGGGAAAGACTGCA 57.279 34.615 0.00 0.00 0.00 4.41
599 614 9.026121 TCTTGTAGATATATAGGGAAAGACTGC 57.974 37.037 0.00 0.00 0.00 4.40
629 644 2.930950 CAGGTTCAAGTCCTGGAAACA 58.069 47.619 0.00 0.00 46.03 2.83
636 651 0.393077 CGGTCACAGGTTCAAGTCCT 59.607 55.000 0.00 0.00 35.45 3.85
637 652 1.228657 GCGGTCACAGGTTCAAGTCC 61.229 60.000 0.00 0.00 0.00 3.85
638 653 0.531974 TGCGGTCACAGGTTCAAGTC 60.532 55.000 0.00 0.00 0.00 3.01
639 654 0.108585 ATGCGGTCACAGGTTCAAGT 59.891 50.000 0.00 0.00 0.00 3.16
640 655 0.518636 CATGCGGTCACAGGTTCAAG 59.481 55.000 0.00 0.00 0.00 3.02
641 656 0.888736 CCATGCGGTCACAGGTTCAA 60.889 55.000 0.00 0.00 0.00 2.69
642 657 1.302431 CCATGCGGTCACAGGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
643 658 1.302511 ACCATGCGGTCACAGGTTC 60.303 57.895 0.00 0.00 44.71 3.62
644 659 2.836154 ACCATGCGGTCACAGGTT 59.164 55.556 0.00 0.00 44.71 3.50
653 668 1.789078 GCTGCCTTATGACCATGCGG 61.789 60.000 0.00 0.00 38.77 5.69
654 669 1.096967 TGCTGCCTTATGACCATGCG 61.097 55.000 0.00 0.00 0.00 4.73
655 670 1.105457 TTGCTGCCTTATGACCATGC 58.895 50.000 0.00 0.00 0.00 4.06
656 671 2.372264 AGTTGCTGCCTTATGACCATG 58.628 47.619 0.00 0.00 0.00 3.66
657 672 2.814805 AGTTGCTGCCTTATGACCAT 57.185 45.000 0.00 0.00 0.00 3.55
658 673 2.584835 AAGTTGCTGCCTTATGACCA 57.415 45.000 0.00 0.00 0.00 4.02
659 674 3.128764 GGTAAAGTTGCTGCCTTATGACC 59.871 47.826 0.00 0.25 0.00 4.02
660 675 3.756434 TGGTAAAGTTGCTGCCTTATGAC 59.244 43.478 0.00 0.00 0.00 3.06
661 676 3.756434 GTGGTAAAGTTGCTGCCTTATGA 59.244 43.478 0.00 0.00 0.00 2.15
662 677 3.758554 AGTGGTAAAGTTGCTGCCTTATG 59.241 43.478 0.00 0.00 0.00 1.90
663 678 3.758554 CAGTGGTAAAGTTGCTGCCTTAT 59.241 43.478 0.00 0.00 0.00 1.73
664 679 3.146066 CAGTGGTAAAGTTGCTGCCTTA 58.854 45.455 0.00 0.00 0.00 2.69
665 680 1.956477 CAGTGGTAAAGTTGCTGCCTT 59.044 47.619 0.00 0.00 0.00 4.35
666 681 1.133792 ACAGTGGTAAAGTTGCTGCCT 60.134 47.619 0.00 0.00 0.00 4.75
667 682 1.001378 CACAGTGGTAAAGTTGCTGCC 60.001 52.381 0.00 0.00 0.00 4.85
668 683 1.600413 GCACAGTGGTAAAGTTGCTGC 60.600 52.381 1.84 0.00 0.00 5.25
669 684 1.001378 GGCACAGTGGTAAAGTTGCTG 60.001 52.381 1.84 0.00 0.00 4.41
670 685 1.318576 GGCACAGTGGTAAAGTTGCT 58.681 50.000 1.84 0.00 0.00 3.91
671 686 1.028905 TGGCACAGTGGTAAAGTTGC 58.971 50.000 1.84 0.00 0.00 4.17
672 687 2.543653 GCTTGGCACAGTGGTAAAGTTG 60.544 50.000 1.84 0.00 42.39 3.16
673 688 1.681264 GCTTGGCACAGTGGTAAAGTT 59.319 47.619 1.84 0.00 42.39 2.66
674 689 1.318576 GCTTGGCACAGTGGTAAAGT 58.681 50.000 1.84 0.00 42.39 2.66
675 690 0.598065 GGCTTGGCACAGTGGTAAAG 59.402 55.000 1.84 0.00 42.39 1.85
676 691 0.184933 AGGCTTGGCACAGTGGTAAA 59.815 50.000 1.84 0.00 42.39 2.01
677 692 0.250727 GAGGCTTGGCACAGTGGTAA 60.251 55.000 1.84 0.00 42.39 2.85
678 693 1.374947 GAGGCTTGGCACAGTGGTA 59.625 57.895 1.84 0.00 42.39 3.25
679 694 2.113986 GAGGCTTGGCACAGTGGT 59.886 61.111 1.84 0.00 42.39 4.16
680 695 2.674380 GGAGGCTTGGCACAGTGG 60.674 66.667 1.84 0.00 42.39 4.00
681 696 2.674380 GGGAGGCTTGGCACAGTG 60.674 66.667 0.00 0.00 42.39 3.66
682 697 3.971702 GGGGAGGCTTGGCACAGT 61.972 66.667 0.00 0.00 42.39 3.55
683 698 3.215587 AAGGGGAGGCTTGGCACAG 62.216 63.158 0.00 0.00 42.39 3.66
684 699 3.185203 AAGGGGAGGCTTGGCACA 61.185 61.111 0.00 0.00 0.00 4.57
685 700 2.361737 GAAGGGGAGGCTTGGCAC 60.362 66.667 0.00 0.00 0.00 5.01
686 701 2.781258 TAGGAAGGGGAGGCTTGGCA 62.781 60.000 0.00 0.00 0.00 4.92
687 702 1.356494 ATAGGAAGGGGAGGCTTGGC 61.356 60.000 0.00 0.00 0.00 4.52
688 703 1.226311 AATAGGAAGGGGAGGCTTGG 58.774 55.000 0.00 0.00 0.00 3.61
689 704 3.388552 AAAATAGGAAGGGGAGGCTTG 57.611 47.619 0.00 0.00 0.00 4.01
690 705 3.077543 ACAAAAATAGGAAGGGGAGGCTT 59.922 43.478 0.00 0.00 0.00 4.35
691 706 2.654896 ACAAAAATAGGAAGGGGAGGCT 59.345 45.455 0.00 0.00 0.00 4.58
692 707 3.101643 ACAAAAATAGGAAGGGGAGGC 57.898 47.619 0.00 0.00 0.00 4.70
693 708 4.322725 GCAAACAAAAATAGGAAGGGGAGG 60.323 45.833 0.00 0.00 0.00 4.30
694 709 4.528206 AGCAAACAAAAATAGGAAGGGGAG 59.472 41.667 0.00 0.00 0.00 4.30
695 710 4.488770 AGCAAACAAAAATAGGAAGGGGA 58.511 39.130 0.00 0.00 0.00 4.81
696 711 4.890158 AGCAAACAAAAATAGGAAGGGG 57.110 40.909 0.00 0.00 0.00 4.79
697 712 7.260603 CAGATAGCAAACAAAAATAGGAAGGG 58.739 38.462 0.00 0.00 0.00 3.95
698 713 7.260603 CCAGATAGCAAACAAAAATAGGAAGG 58.739 38.462 0.00 0.00 0.00 3.46
699 714 7.093771 ACCCAGATAGCAAACAAAAATAGGAAG 60.094 37.037 0.00 0.00 0.00 3.46
700 715 6.723977 ACCCAGATAGCAAACAAAAATAGGAA 59.276 34.615 0.00 0.00 0.00 3.36
701 716 6.252995 ACCCAGATAGCAAACAAAAATAGGA 58.747 36.000 0.00 0.00 0.00 2.94
702 717 6.530019 ACCCAGATAGCAAACAAAAATAGG 57.470 37.500 0.00 0.00 0.00 2.57
703 718 8.956426 TCTAACCCAGATAGCAAACAAAAATAG 58.044 33.333 0.00 0.00 0.00 1.73
704 719 8.871629 TCTAACCCAGATAGCAAACAAAAATA 57.128 30.769 0.00 0.00 0.00 1.40
705 720 7.775053 TCTAACCCAGATAGCAAACAAAAAT 57.225 32.000 0.00 0.00 0.00 1.82
706 721 7.589958 TTCTAACCCAGATAGCAAACAAAAA 57.410 32.000 0.00 0.00 31.77 1.94
707 722 7.775053 ATTCTAACCCAGATAGCAAACAAAA 57.225 32.000 0.00 0.00 31.77 2.44
708 723 7.775053 AATTCTAACCCAGATAGCAAACAAA 57.225 32.000 0.00 0.00 31.77 2.83
714 729 9.784376 ACCTATATAATTCTAACCCAGATAGCA 57.216 33.333 0.00 0.00 31.77 3.49
765 780 5.351189 AGCAAAATTTTCCCGTGAAATATGC 59.649 36.000 0.00 10.11 40.08 3.14
766 781 6.966435 AGCAAAATTTTCCCGTGAAATATG 57.034 33.333 0.00 0.00 40.08 1.78
767 782 9.665719 AATAAGCAAAATTTTCCCGTGAAATAT 57.334 25.926 0.00 0.00 40.08 1.28
774 789 8.896320 AAGTAAAATAAGCAAAATTTTCCCGT 57.104 26.923 0.00 0.00 37.61 5.28
785 800 9.606631 ACCACAATGAAAAAGTAAAATAAGCAA 57.393 25.926 0.00 0.00 0.00 3.91
802 817 8.836413 CACTTTAAAACTCTCTAACCACAATGA 58.164 33.333 0.00 0.00 0.00 2.57
813 828 6.884836 ACTCACCAAACACTTTAAAACTCTCT 59.115 34.615 0.00 0.00 0.00 3.10
823 838 5.010617 ACACTTGAAACTCACCAAACACTTT 59.989 36.000 0.00 0.00 0.00 2.66
841 874 2.298411 AGCACTTGCCAAAACACTTG 57.702 45.000 0.00 0.00 43.38 3.16
851 885 0.598065 CCAACTACCAAGCACTTGCC 59.402 55.000 4.82 0.00 43.38 4.52
855 889 4.158015 ACTACTACCAACTACCAAGCACT 58.842 43.478 0.00 0.00 0.00 4.40
862 896 8.291191 AGTGATTTCTACTACTACCAACTACC 57.709 38.462 0.00 0.00 0.00 3.18
949 990 1.408266 GGGTGGTGGCCTAGTTGTATG 60.408 57.143 3.32 0.00 0.00 2.39
1087 1130 4.968259 AGTACTTGTGTGCCATACTTTGA 58.032 39.130 0.00 0.00 0.00 2.69
1105 1148 2.758979 TGCTGCCCTGTAGTTCTAGTAC 59.241 50.000 0.00 0.00 0.00 2.73
1147 1190 7.387673 ACAGAGAACATCATGAATTACACGAAA 59.612 33.333 0.00 0.00 0.00 3.46
1351 1396 1.073284 AGCTAGCCGGTTGAAGGAAAA 59.927 47.619 12.13 0.00 0.00 2.29
1366 1411 4.821805 TGTTTCCTTCACCTTGAAAGCTAG 59.178 41.667 0.00 0.00 35.73 3.42
1446 1491 4.689612 TGAGCTGTTAGTATCCCCATTC 57.310 45.455 0.00 0.00 0.00 2.67
1515 1560 5.365025 CCCCACTAGATCTTCTTCATCAAGA 59.635 44.000 0.00 0.00 36.82 3.02
1583 1628 2.489971 TCACAGACCGTTCCAAATCAC 58.510 47.619 0.00 0.00 0.00 3.06
1596 1641 3.338249 TCCAAGCAAAGCTATCACAGAC 58.662 45.455 0.00 0.00 38.25 3.51
1609 1654 1.075601 AGACCTCCCATTCCAAGCAA 58.924 50.000 0.00 0.00 0.00 3.91
1666 1711 3.593328 TGACATTGGAATTCCTCCCTCTT 59.407 43.478 24.73 3.41 44.69 2.85
1779 1824 1.757118 TCCATAGCCACAGTGCTAGAC 59.243 52.381 0.00 0.00 46.31 2.59
1807 1852 2.064762 CTTCAGTGTCTCTTCAAGGCG 58.935 52.381 0.00 0.00 29.57 5.52
1828 1873 1.399791 CTTCCGCTGCTCCAGAAATTC 59.600 52.381 0.00 0.00 32.44 2.17
1842 1887 7.600375 TCATCTAAGATGATCAAATACTTCCGC 59.400 37.037 0.00 0.00 0.00 5.54
1860 1905 5.982356 TCTGGAGTCCAAACATCATCTAAG 58.018 41.667 14.17 0.00 30.80 2.18
1863 1908 4.841422 CTTCTGGAGTCCAAACATCATCT 58.159 43.478 14.17 0.00 30.80 2.90
1921 1966 9.379770 TGTGATGATCAATCTACTTCCCTTATA 57.620 33.333 0.00 0.00 36.15 0.98
1929 1974 6.600822 CCCTTGTTGTGATGATCAATCTACTT 59.399 38.462 0.00 0.00 36.15 2.24
1971 2016 1.227205 CTGTCGAGGAGAGGCATGC 60.227 63.158 9.90 9.90 0.00 4.06
1983 2028 5.556915 ACTTCCATTTTTATGGTCTGTCGA 58.443 37.500 4.24 0.00 42.28 4.20
1984 2029 5.880054 ACTTCCATTTTTATGGTCTGTCG 57.120 39.130 4.24 0.00 42.28 4.35
1989 2034 8.581578 TCTGGTAAAACTTCCATTTTTATGGTC 58.418 33.333 4.24 0.00 42.28 4.02
1997 2042 7.201911 CCTTGTCTTCTGGTAAAACTTCCATTT 60.202 37.037 0.00 0.00 33.01 2.32
2006 2051 3.826157 CCATGCCTTGTCTTCTGGTAAAA 59.174 43.478 0.00 0.00 0.00 1.52
2031 2076 7.833285 TGGAAAGGCTTTCTTACAAAATAGT 57.167 32.000 32.28 0.00 39.59 2.12
2109 2154 1.691196 AGCCTTTGCACTTGCTAACA 58.309 45.000 2.33 0.00 42.66 2.41
2165 2210 1.491670 CACCGTTCTCTCACACACAG 58.508 55.000 0.00 0.00 0.00 3.66
2177 2222 4.315803 TCTTCTCAATTCTTCCACCGTTC 58.684 43.478 0.00 0.00 0.00 3.95
2181 2226 7.929941 ATTTACTCTTCTCAATTCTTCCACC 57.070 36.000 0.00 0.00 0.00 4.61
2192 2237 7.963532 ACTCAGTTGGTTATTTACTCTTCTCA 58.036 34.615 0.00 0.00 0.00 3.27
2236 2281 2.103094 TCCTTATGTGATCAAGCCTCGG 59.897 50.000 0.00 0.00 0.00 4.63
2295 2340 9.848172 CTGCAATACAATAAACAACTTTTCAAC 57.152 29.630 0.00 0.00 0.00 3.18
2310 2355 7.340232 TCTTCTGAAAATAGGCTGCAATACAAT 59.660 33.333 0.50 0.00 0.00 2.71
2359 2404 3.141398 CTGCTGTCCATAACCGCATAAT 58.859 45.455 0.00 0.00 45.48 1.28
2364 2409 0.811616 CCTCTGCTGTCCATAACCGC 60.812 60.000 0.00 0.00 38.48 5.68
2561 2606 8.415950 TTCACCATCATAAGTAACACCAAAAT 57.584 30.769 0.00 0.00 0.00 1.82
2594 2639 1.751924 GCCGTACATCCTGAAGAGACT 59.248 52.381 0.00 0.00 0.00 3.24
2609 2657 2.578786 TCTGGAGTATCAATCGCCGTA 58.421 47.619 0.00 0.00 36.25 4.02
2613 2661 6.757010 TCTTTAGTTTCTGGAGTATCAATCGC 59.243 38.462 0.00 0.00 36.25 4.58
2628 2676 7.201741 GGCTGATGGTTATCCTTCTTTAGTTTC 60.202 40.741 7.13 0.00 38.32 2.78
2676 2727 2.268298 CCCAGTGTAATGACTGTACGC 58.732 52.381 0.00 0.00 41.65 4.42
2713 2764 6.614087 TCCTTACATAGCAAAGGTATAGTGGT 59.386 38.462 1.34 0.00 42.47 4.16
2749 2803 5.865085 ACCACTTAATTCTAGCACTGTCAA 58.135 37.500 0.00 0.00 0.00 3.18
2779 2833 3.451141 AGCATCTGGAATCTTCTCGAC 57.549 47.619 0.00 0.00 0.00 4.20
2835 2889 2.519377 TCTTCACATTCGAACCACGT 57.481 45.000 0.00 0.00 43.13 4.49
2847 2901 2.373169 AGACTTTGGGAGCATCTTCACA 59.627 45.455 0.00 0.00 33.73 3.58
2869 2923 9.337396 TGTCAACAAATTAGAAAGCTTCTCTAA 57.663 29.630 22.22 22.22 41.14 2.10
2918 2972 0.463295 CCCACTAGGCAGCTCATGTG 60.463 60.000 0.00 0.00 0.00 3.21
2985 3039 1.064017 AGCTCTCTCCAAGTCGGATCT 60.064 52.381 0.00 0.00 45.19 2.75
2991 3045 4.429108 GACATGTAAGCTCTCTCCAAGTC 58.571 47.826 0.00 0.00 0.00 3.01
3024 3078 3.130450 TCCAAGACCATTGGGGATACAT 58.870 45.455 7.78 0.00 39.96 2.29
3092 3146 4.141482 GGTCCCCTAAATGCATAAGAGACA 60.141 45.833 20.94 0.00 0.00 3.41
3101 3155 0.918983 CCTCAGGTCCCCTAAATGCA 59.081 55.000 0.00 0.00 29.64 3.96
3114 3168 2.125773 AGCTTCTCATTTGCCTCAGG 57.874 50.000 0.00 0.00 0.00 3.86
3165 3219 1.135546 AGAGACTCACTGATGCGTTCG 60.136 52.381 5.02 0.00 0.00 3.95
3209 3263 1.315257 CCTTGCACCCACACATAGGC 61.315 60.000 0.00 0.00 0.00 3.93
3215 3269 0.962356 CTCATCCCTTGCACCCACAC 60.962 60.000 0.00 0.00 0.00 3.82
3247 3301 1.549203 GGCAGGTGGACATTCAACAT 58.451 50.000 0.00 0.00 0.00 2.71
3260 3314 2.058829 CTTTTGCACGTTCGGCAGGT 62.059 55.000 0.00 0.00 43.05 4.00
3361 3415 7.437565 CAGATGTGACCAGTATAGAGACAATTG 59.562 40.741 3.24 3.24 0.00 2.32
3384 3438 0.616111 GCAGGGGGTCTTCTCTCAGA 60.616 60.000 0.00 0.00 0.00 3.27
3526 3580 7.953752 TGTATCTCTAGACGACTCAGATTAGA 58.046 38.462 12.33 0.10 32.02 2.10
3704 3758 3.876914 CCACTTCTGCACTTCAAGTACAA 59.123 43.478 0.00 0.00 0.00 2.41
3751 3805 3.066190 CCTGGCCAGTGTGCATGG 61.066 66.667 30.63 10.62 41.04 3.66
3753 3807 0.251922 ATTTCCTGGCCAGTGTGCAT 60.252 50.000 30.63 12.45 0.00 3.96
3754 3808 1.153524 ATTTCCTGGCCAGTGTGCA 59.846 52.632 30.63 10.64 0.00 4.57
3755 3809 1.181098 ACATTTCCTGGCCAGTGTGC 61.181 55.000 30.63 0.00 0.00 4.57
3782 3842 2.474816 GCTAGTTGGGAGATTAGTGCG 58.525 52.381 0.00 0.00 0.00 5.34
3793 3862 1.276622 ACTGGTACTGGCTAGTTGGG 58.723 55.000 8.46 0.00 38.36 4.12
3811 3880 7.790782 AGATTAGAGATGAGGGAGGAATTAC 57.209 40.000 0.00 0.00 0.00 1.89
3814 3883 7.543755 AGTAAGATTAGAGATGAGGGAGGAAT 58.456 38.462 0.00 0.00 0.00 3.01
3823 3892 9.392259 TCTTCAACGTAGTAAGATTAGAGATGA 57.608 33.333 0.00 0.00 45.00 2.92
3842 3911 1.563111 TCACCGTCAACGTCTTCAAC 58.437 50.000 1.48 0.00 37.74 3.18
3845 3914 3.508762 ACATATCACCGTCAACGTCTTC 58.491 45.455 1.48 0.00 37.74 2.87
3850 3919 3.424302 CCAACAACATATCACCGTCAACG 60.424 47.826 0.00 0.00 39.44 4.10
3856 3925 4.095632 TGCATAACCAACAACATATCACCG 59.904 41.667 0.00 0.00 0.00 4.94
3857 3926 5.450412 CCTGCATAACCAACAACATATCACC 60.450 44.000 0.00 0.00 0.00 4.02
3858 3927 5.125417 ACCTGCATAACCAACAACATATCAC 59.875 40.000 0.00 0.00 0.00 3.06
3859 3928 5.260424 ACCTGCATAACCAACAACATATCA 58.740 37.500 0.00 0.00 0.00 2.15
3860 3929 5.504010 CGACCTGCATAACCAACAACATATC 60.504 44.000 0.00 0.00 0.00 1.63
3861 3930 4.335315 CGACCTGCATAACCAACAACATAT 59.665 41.667 0.00 0.00 0.00 1.78
3862 3931 3.687212 CGACCTGCATAACCAACAACATA 59.313 43.478 0.00 0.00 0.00 2.29
3863 3932 2.487762 CGACCTGCATAACCAACAACAT 59.512 45.455 0.00 0.00 0.00 2.71
3864 3933 1.876799 CGACCTGCATAACCAACAACA 59.123 47.619 0.00 0.00 0.00 3.33
3865 3934 1.401018 GCGACCTGCATAACCAACAAC 60.401 52.381 0.00 0.00 45.45 3.32
3866 3935 0.878416 GCGACCTGCATAACCAACAA 59.122 50.000 0.00 0.00 45.45 2.83
3867 3936 2.550487 GCGACCTGCATAACCAACA 58.450 52.632 0.00 0.00 45.45 3.33
4067 4138 2.760634 TGGAAATACAGCTCGCTCAA 57.239 45.000 0.00 0.00 0.00 3.02
4135 4211 4.708177 TCTGAAATAAGCATAGGGAGCAC 58.292 43.478 0.00 0.00 0.00 4.40
4147 4224 5.147162 GCGTTCACCAGTTTCTGAAATAAG 58.853 41.667 6.06 1.00 32.44 1.73
4163 4240 3.120121 GCTGAAACAAATCATGCGTTCAC 59.880 43.478 0.00 0.00 34.44 3.18
4184 4261 7.378728 TCGCAAATATCAGTACATATATAGCGC 59.621 37.037 23.92 0.00 39.71 5.92
4199 4276 2.159531 GCAAGCACACTCGCAAATATCA 60.160 45.455 0.00 0.00 0.00 2.15
4271 4348 7.860649 ACCCCAGCAATAATTATGAAATCAT 57.139 32.000 0.00 1.01 40.22 2.45
4309 4386 0.322187 GCAACAGGTTACCACGGGAT 60.322 55.000 3.51 0.00 0.00 3.85
4341 4424 4.037690 CAGAGCAAAGCAAGTTACAACAC 58.962 43.478 0.00 0.00 0.00 3.32
4362 4445 2.436417 GCCACAGCTGAAATAGGTTCA 58.564 47.619 23.35 0.00 44.20 3.18
4375 4458 4.209080 GTGTTTTTATTCAACAGCCACAGC 59.791 41.667 0.00 0.00 34.79 4.40
4376 4459 5.591099 AGTGTTTTTATTCAACAGCCACAG 58.409 37.500 0.00 0.00 34.79 3.66
4377 4460 5.590530 AGTGTTTTTATTCAACAGCCACA 57.409 34.783 0.00 0.00 34.79 4.17
4378 4461 5.234116 CCAAGTGTTTTTATTCAACAGCCAC 59.766 40.000 0.00 0.00 34.79 5.01
4379 4462 5.105146 ACCAAGTGTTTTTATTCAACAGCCA 60.105 36.000 0.00 0.00 34.79 4.75
4380 4463 5.356426 ACCAAGTGTTTTTATTCAACAGCC 58.644 37.500 0.00 0.00 34.79 4.85
4381 4464 6.902224 AACCAAGTGTTTTTATTCAACAGC 57.098 33.333 0.00 0.00 34.79 4.40
4384 4467 8.245701 TCACAAACCAAGTGTTTTTATTCAAC 57.754 30.769 0.00 0.00 44.80 3.18
4386 4469 9.092876 GAATCACAAACCAAGTGTTTTTATTCA 57.907 29.630 0.00 0.00 44.80 2.57
4392 4475 9.612066 AATTATGAATCACAAACCAAGTGTTTT 57.388 25.926 0.00 0.00 44.80 2.43
4394 4477 8.641541 AGAATTATGAATCACAAACCAAGTGTT 58.358 29.630 0.00 0.00 39.43 3.32
4395 4478 8.084073 CAGAATTATGAATCACAAACCAAGTGT 58.916 33.333 0.00 0.00 38.16 3.55
4398 4481 6.532657 GCCAGAATTATGAATCACAAACCAAG 59.467 38.462 0.54 0.00 0.00 3.61
4399 4482 6.211184 AGCCAGAATTATGAATCACAAACCAA 59.789 34.615 0.54 0.00 0.00 3.67
4402 4485 6.855836 TGAGCCAGAATTATGAATCACAAAC 58.144 36.000 0.54 0.00 0.00 2.93
4406 4489 5.128919 ACCTGAGCCAGAATTATGAATCAC 58.871 41.667 0.54 0.00 32.44 3.06
4407 4490 5.378230 ACCTGAGCCAGAATTATGAATCA 57.622 39.130 0.54 4.54 32.44 2.57
4408 4491 6.128063 GCATACCTGAGCCAGAATTATGAATC 60.128 42.308 0.54 0.00 32.44 2.52
4415 4498 3.589951 ATGCATACCTGAGCCAGAATT 57.410 42.857 0.00 0.00 32.44 2.17
4416 4499 3.589951 AATGCATACCTGAGCCAGAAT 57.410 42.857 0.00 0.00 32.44 2.40
4417 4500 3.370840 AAATGCATACCTGAGCCAGAA 57.629 42.857 0.00 0.00 32.44 3.02
4418 4501 3.282021 GAAAATGCATACCTGAGCCAGA 58.718 45.455 0.00 0.00 32.44 3.86
4419 4502 2.032550 CGAAAATGCATACCTGAGCCAG 59.967 50.000 0.00 0.00 0.00 4.85
4420 4503 2.016318 CGAAAATGCATACCTGAGCCA 58.984 47.619 0.00 0.00 0.00 4.75
4421 4504 1.268743 GCGAAAATGCATACCTGAGCC 60.269 52.381 0.00 0.00 34.15 4.70
4422 4505 1.268743 GGCGAAAATGCATACCTGAGC 60.269 52.381 0.00 1.33 36.28 4.26
4423 4506 1.003545 CGGCGAAAATGCATACCTGAG 60.004 52.381 0.00 0.00 36.28 3.35
4424 4507 1.013596 CGGCGAAAATGCATACCTGA 58.986 50.000 0.00 0.00 36.28 3.86
4425 4508 0.732571 ACGGCGAAAATGCATACCTG 59.267 50.000 16.62 0.00 36.28 4.00
4426 4509 1.014352 GACGGCGAAAATGCATACCT 58.986 50.000 16.62 0.00 36.28 3.08
4427 4510 0.028902 GGACGGCGAAAATGCATACC 59.971 55.000 16.62 0.00 36.28 2.73
4428 4511 0.028902 GGGACGGCGAAAATGCATAC 59.971 55.000 16.62 0.00 36.28 2.39
4429 4512 2.399856 GGGACGGCGAAAATGCATA 58.600 52.632 16.62 0.00 36.28 3.14
4430 4513 3.196648 GGGACGGCGAAAATGCAT 58.803 55.556 16.62 0.00 36.28 3.96
4443 4526 3.600898 AAGGCAGTAACCGCGGGAC 62.601 63.158 31.76 25.82 33.69 4.46
4444 4527 1.543065 TAAAGGCAGTAACCGCGGGA 61.543 55.000 31.76 14.80 33.69 5.14
4445 4528 1.078988 TAAAGGCAGTAACCGCGGG 60.079 57.895 31.76 12.50 33.69 6.13
4446 4529 1.702491 GCTAAAGGCAGTAACCGCGG 61.702 60.000 26.86 26.86 41.35 6.46
4447 4530 0.739813 AGCTAAAGGCAGTAACCGCG 60.740 55.000 0.00 0.00 44.79 6.46
4448 4531 0.727398 CAGCTAAAGGCAGTAACCGC 59.273 55.000 0.00 0.00 44.79 5.68
4449 4532 2.380084 TCAGCTAAAGGCAGTAACCG 57.620 50.000 0.00 0.00 44.79 4.44
4450 4533 3.610911 ACATCAGCTAAAGGCAGTAACC 58.389 45.455 0.00 0.00 44.79 2.85
4451 4534 4.695455 TCAACATCAGCTAAAGGCAGTAAC 59.305 41.667 0.00 0.00 44.79 2.50
4452 4535 4.905429 TCAACATCAGCTAAAGGCAGTAA 58.095 39.130 0.00 0.00 44.79 2.24
4453 4536 4.551702 TCAACATCAGCTAAAGGCAGTA 57.448 40.909 0.00 0.00 44.79 2.74
4454 4537 3.423539 TCAACATCAGCTAAAGGCAGT 57.576 42.857 0.00 0.00 44.79 4.40
4455 4538 4.771590 TTTCAACATCAGCTAAAGGCAG 57.228 40.909 0.00 0.00 44.79 4.85
4456 4539 4.523943 ACATTTCAACATCAGCTAAAGGCA 59.476 37.500 0.00 0.00 44.79 4.75
4457 4540 5.064441 ACATTTCAACATCAGCTAAAGGC 57.936 39.130 0.00 0.00 42.19 4.35
4458 4541 6.449698 ACAACATTTCAACATCAGCTAAAGG 58.550 36.000 0.00 0.00 0.00 3.11
4459 4542 7.538678 GGTACAACATTTCAACATCAGCTAAAG 59.461 37.037 0.00 0.00 0.00 1.85
4460 4543 7.013750 TGGTACAACATTTCAACATCAGCTAAA 59.986 33.333 0.00 0.00 31.92 1.85
4461 4544 6.488344 TGGTACAACATTTCAACATCAGCTAA 59.512 34.615 0.00 0.00 31.92 3.09
4462 4545 6.000840 TGGTACAACATTTCAACATCAGCTA 58.999 36.000 0.00 0.00 31.92 3.32
4463 4546 4.826733 TGGTACAACATTTCAACATCAGCT 59.173 37.500 0.00 0.00 31.92 4.24
4464 4547 5.119931 TGGTACAACATTTCAACATCAGC 57.880 39.130 0.00 0.00 31.92 4.26
4465 4548 6.144854 CACTGGTACAACATTTCAACATCAG 58.855 40.000 0.00 0.00 38.70 2.90
4466 4549 5.592282 ACACTGGTACAACATTTCAACATCA 59.408 36.000 0.00 0.00 38.70 3.07
4467 4550 6.072112 ACACTGGTACAACATTTCAACATC 57.928 37.500 0.00 0.00 38.70 3.06
4531 4616 5.453057 CCACATGTCCAAAATGAGAACCAAA 60.453 40.000 0.00 0.00 0.00 3.28
4540 4625 1.669502 CGTGCCCACATGTCCAAAATG 60.670 52.381 0.00 0.00 0.00 2.32
4551 4636 1.764571 AAGGAAGTAGCGTGCCCACA 61.765 55.000 0.00 0.00 0.00 4.17
4560 4645 6.207928 GGACGTAATCTAGAAAGGAAGTAGC 58.792 44.000 0.00 0.00 0.00 3.58
4611 4696 6.860023 GCATGATGATCCATAAGTAAACAAGC 59.140 38.462 0.00 0.00 0.00 4.01
4641 4728 4.192317 GCTTTAGCCTTAGCATGTACAGT 58.808 43.478 0.33 0.00 43.56 3.55
4658 4745 4.409718 TGACACAAGTACACTGGCTTTA 57.590 40.909 0.00 0.00 0.00 1.85
4691 4778 1.676014 CCGTCGATTGCCTCCTCTTTT 60.676 52.381 0.00 0.00 0.00 2.27
4722 4809 2.890311 TGGTCCTTGGTAAAACTGCATG 59.110 45.455 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.