Multiple sequence alignment - TraesCS7A01G045800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G045800 chr7A 100.000 4526 0 0 1 4526 20727249 20731774 0.000000e+00 8359
1 TraesCS7A01G045800 chr7A 84.718 2925 408 31 780 3680 20980400 20983309 0.000000e+00 2889
2 TraesCS7A01G045800 chr7A 83.855 3035 420 45 759 3755 20588530 20591532 0.000000e+00 2826
3 TraesCS7A01G045800 chr7A 83.449 3039 452 37 759 3763 20482582 20485603 0.000000e+00 2778
4 TraesCS7A01G045800 chr7A 82.810 3124 477 39 759 3842 20966060 20969163 0.000000e+00 2739
5 TraesCS7A01G045800 chr7A 83.989 2898 415 34 883 3753 20650718 20653593 0.000000e+00 2736
6 TraesCS7A01G045800 chr7A 83.001 3059 473 36 848 3868 20676354 20679403 0.000000e+00 2724
7 TraesCS7A01G045800 chr7A 82.404 2995 472 38 907 3868 20910624 20913596 0.000000e+00 2560
8 TraesCS7A01G045800 chr7A 87.111 225 27 1 133 357 20600387 20600609 2.090000e-63 254
9 TraesCS7A01G045800 chr7A 85.514 214 18 6 392 593 20600611 20600823 1.280000e-50 211
10 TraesCS7A01G045800 chr7A 82.979 188 18 6 3933 4118 20447859 20448034 1.690000e-34 158
11 TraesCS7A01G045800 chr7A 88.462 130 14 1 132 260 20977805 20977934 6.060000e-34 156
12 TraesCS7A01G045800 chr7D 91.583 3006 225 12 756 3755 20574933 20577916 0.000000e+00 4124
13 TraesCS7A01G045800 chr7D 84.335 3128 446 33 907 4008 20485549 20488658 0.000000e+00 3022
14 TraesCS7A01G045800 chr7D 84.370 3103 443 26 759 3836 20310634 20313719 0.000000e+00 3005
15 TraesCS7A01G045800 chr7D 84.086 3010 439 23 759 3748 89533244 89530255 0.000000e+00 2868
16 TraesCS7A01G045800 chr7D 95.318 598 25 2 1 595 20574337 20574934 0.000000e+00 946
17 TraesCS7A01G045800 chr7D 83.172 517 53 9 3966 4468 20524519 20525015 4.160000e-120 442
18 TraesCS7A01G045800 chr7D 81.108 397 37 17 4164 4523 20488671 20489066 2.670000e-72 283
19 TraesCS7A01G045800 chr2A 83.719 3022 441 36 758 3752 733087570 733090567 0.000000e+00 2808
20 TraesCS7A01G045800 chr2A 94.318 176 6 4 584 757 140499579 140499752 2.680000e-67 267
21 TraesCS7A01G045800 chr2B 83.668 2890 432 29 904 3767 727685961 727688836 0.000000e+00 2686
22 TraesCS7A01G045800 chr2B 82.916 1159 173 15 2627 3767 727711236 727712387 0.000000e+00 1020
23 TraesCS7A01G045800 chr2B 74.925 335 55 19 3 321 727685242 727685563 4.750000e-25 126
24 TraesCS7A01G045800 chr4A 83.642 2806 408 35 907 3689 713014741 713017518 0.000000e+00 2591
25 TraesCS7A01G045800 chr4A 92.737 179 10 3 594 771 724811114 724811290 5.810000e-64 255
26 TraesCS7A01G045800 chr4D 96.407 167 3 3 593 757 93336683 93336848 5.770000e-69 272
27 TraesCS7A01G045800 chr3D 95.238 168 5 3 594 759 22383601 22383435 3.470000e-66 263
28 TraesCS7A01G045800 chr2D 95.238 168 5 3 592 757 609886789 609886955 3.470000e-66 263
29 TraesCS7A01G045800 chr2D 94.186 172 7 3 590 759 420278325 420278155 4.490000e-65 259
30 TraesCS7A01G045800 chr2D 78.438 320 45 16 20 321 598813291 598813604 2.150000e-43 187
31 TraesCS7A01G045800 chr5D 94.706 170 6 3 590 757 42949728 42949560 1.250000e-65 261
32 TraesCS7A01G045800 chr5D 93.678 174 7 4 591 761 61058093 61057921 1.620000e-64 257
33 TraesCS7A01G045800 chr3B 93.182 176 8 4 592 765 111133821 111133648 5.810000e-64 255
34 TraesCS7A01G045800 chr3A 77.273 330 45 20 3 312 308689487 308689806 2.800000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G045800 chr7A 20727249 20731774 4525 False 8359.0 8359 100.0000 1 4526 1 chr7A.!!$F6 4525
1 TraesCS7A01G045800 chr7A 20588530 20591532 3002 False 2826.0 2826 83.8550 759 3755 1 chr7A.!!$F3 2996
2 TraesCS7A01G045800 chr7A 20482582 20485603 3021 False 2778.0 2778 83.4490 759 3763 1 chr7A.!!$F2 3004
3 TraesCS7A01G045800 chr7A 20966060 20969163 3103 False 2739.0 2739 82.8100 759 3842 1 chr7A.!!$F8 3083
4 TraesCS7A01G045800 chr7A 20650718 20653593 2875 False 2736.0 2736 83.9890 883 3753 1 chr7A.!!$F4 2870
5 TraesCS7A01G045800 chr7A 20676354 20679403 3049 False 2724.0 2724 83.0010 848 3868 1 chr7A.!!$F5 3020
6 TraesCS7A01G045800 chr7A 20910624 20913596 2972 False 2560.0 2560 82.4040 907 3868 1 chr7A.!!$F7 2961
7 TraesCS7A01G045800 chr7A 20977805 20983309 5504 False 1522.5 2889 86.5900 132 3680 2 chr7A.!!$F10 3548
8 TraesCS7A01G045800 chr7D 20310634 20313719 3085 False 3005.0 3005 84.3700 759 3836 1 chr7D.!!$F1 3077
9 TraesCS7A01G045800 chr7D 89530255 89533244 2989 True 2868.0 2868 84.0860 759 3748 1 chr7D.!!$R1 2989
10 TraesCS7A01G045800 chr7D 20574337 20577916 3579 False 2535.0 4124 93.4505 1 3755 2 chr7D.!!$F4 3754
11 TraesCS7A01G045800 chr7D 20485549 20489066 3517 False 1652.5 3022 82.7215 907 4523 2 chr7D.!!$F3 3616
12 TraesCS7A01G045800 chr2A 733087570 733090567 2997 False 2808.0 2808 83.7190 758 3752 1 chr2A.!!$F2 2994
13 TraesCS7A01G045800 chr2B 727685242 727688836 3594 False 1406.0 2686 79.2965 3 3767 2 chr2B.!!$F2 3764
14 TraesCS7A01G045800 chr2B 727711236 727712387 1151 False 1020.0 1020 82.9160 2627 3767 1 chr2B.!!$F1 1140
15 TraesCS7A01G045800 chr4A 713014741 713017518 2777 False 2591.0 2591 83.6420 907 3689 1 chr4A.!!$F1 2782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 2817 0.108138 AAGTGACTGCATACGGAGGC 60.108 55.000 0.00 0.0 39.59 4.70 F
662 2823 1.003118 ACTGCATACGGAGGCAAAAGA 59.997 47.619 8.93 0.0 42.83 2.52 F
1596 3800 1.401905 GGTGATCATTTGGAACGCTCC 59.598 52.381 0.00 0.0 42.81 4.70 F
3399 5624 0.906756 CTGAGAGAAGACCCCCTGCA 60.907 60.000 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 3711 1.118838 AGATCTTCCTCCTCAAGGCG 58.881 55.000 0.00 0.0 45.78 5.52 R
2389 4593 1.277273 TGTGCATTCACCTCTCTCCTG 59.723 52.381 0.00 0.0 42.46 3.86 R
3514 5739 0.249657 GACTCAGATTAGGCAGGCCG 60.250 60.000 4.37 0.0 41.95 6.13 R
4218 6478 0.179070 TAGTTCACAACCAGCGCACA 60.179 50.000 11.47 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.523201 CCTAAAGTCAAACATTATTGTCGTGC 59.477 38.462 0.00 0.00 34.06 5.34
255 276 8.677148 TCAACAACTCTAGCTATTTGTTTCTT 57.323 30.769 18.63 6.55 39.56 2.52
349 371 4.579454 AGCCTACGTTCATATTAGCGAA 57.421 40.909 0.00 0.00 0.00 4.70
389 411 2.445525 TGGTCCCTCTTTGCCTTACTTT 59.554 45.455 0.00 0.00 0.00 2.66
593 2754 7.045126 TCTTTTGTTTGATTTCGTGGGTTAT 57.955 32.000 0.00 0.00 0.00 1.89
594 2755 8.167605 TCTTTTGTTTGATTTCGTGGGTTATA 57.832 30.769 0.00 0.00 0.00 0.98
595 2756 8.077386 TCTTTTGTTTGATTTCGTGGGTTATAC 58.923 33.333 0.00 0.00 0.00 1.47
596 2757 7.513371 TTTGTTTGATTTCGTGGGTTATACT 57.487 32.000 0.00 0.00 0.00 2.12
597 2758 6.730960 TGTTTGATTTCGTGGGTTATACTC 57.269 37.500 0.00 0.00 0.00 2.59
598 2759 5.644636 TGTTTGATTTCGTGGGTTATACTCC 59.355 40.000 0.00 0.00 0.00 3.85
599 2760 4.411256 TGATTTCGTGGGTTATACTCCC 57.589 45.455 5.47 5.47 44.81 4.30
600 2761 4.035112 TGATTTCGTGGGTTATACTCCCT 58.965 43.478 11.93 0.00 44.84 4.20
601 2762 4.100498 TGATTTCGTGGGTTATACTCCCTC 59.900 45.833 11.93 8.32 44.84 4.30
602 2763 2.077687 TCGTGGGTTATACTCCCTCC 57.922 55.000 11.93 4.11 44.84 4.30
603 2764 0.672342 CGTGGGTTATACTCCCTCCG 59.328 60.000 11.93 10.28 44.84 4.63
604 2765 1.785647 GTGGGTTATACTCCCTCCGT 58.214 55.000 11.93 0.00 44.84 4.69
605 2766 2.113807 GTGGGTTATACTCCCTCCGTT 58.886 52.381 11.93 0.00 44.84 4.44
606 2767 2.102084 GTGGGTTATACTCCCTCCGTTC 59.898 54.545 11.93 0.00 44.84 3.95
607 2768 1.690893 GGGTTATACTCCCTCCGTTCC 59.309 57.143 5.24 0.00 41.58 3.62
608 2769 1.690893 GGTTATACTCCCTCCGTTCCC 59.309 57.143 0.00 0.00 0.00 3.97
609 2770 2.391678 GTTATACTCCCTCCGTTCCCA 58.608 52.381 0.00 0.00 0.00 4.37
610 2771 2.767960 GTTATACTCCCTCCGTTCCCAA 59.232 50.000 0.00 0.00 0.00 4.12
611 2772 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
612 2773 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
613 2774 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
614 2775 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
615 2776 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
616 2777 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
617 2778 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
618 2779 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
619 2780 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
620 2781 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
621 2782 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
622 2783 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
623 2784 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
624 2785 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
625 2786 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
626 2787 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
627 2788 7.985752 CCGTTCCCAAATATAAGTCTTTCTAGT 59.014 37.037 0.00 0.00 0.00 2.57
628 2789 8.818057 CGTTCCCAAATATAAGTCTTTCTAGTG 58.182 37.037 0.00 0.00 0.00 2.74
629 2790 9.886132 GTTCCCAAATATAAGTCTTTCTAGTGA 57.114 33.333 0.00 0.00 0.00 3.41
639 2800 7.736447 AAGTCTTTCTAGTGATTCCAACAAG 57.264 36.000 0.00 0.00 0.00 3.16
640 2801 6.831976 AGTCTTTCTAGTGATTCCAACAAGT 58.168 36.000 0.00 0.00 0.00 3.16
641 2802 6.708054 AGTCTTTCTAGTGATTCCAACAAGTG 59.292 38.462 0.00 0.00 0.00 3.16
642 2803 6.706270 GTCTTTCTAGTGATTCCAACAAGTGA 59.294 38.462 0.00 0.00 0.00 3.41
643 2804 6.706270 TCTTTCTAGTGATTCCAACAAGTGAC 59.294 38.462 0.00 0.00 0.00 3.67
644 2805 5.808366 TCTAGTGATTCCAACAAGTGACT 57.192 39.130 0.00 0.00 0.00 3.41
645 2806 5.541845 TCTAGTGATTCCAACAAGTGACTG 58.458 41.667 0.00 0.00 0.00 3.51
646 2807 2.880890 AGTGATTCCAACAAGTGACTGC 59.119 45.455 0.00 0.00 0.00 4.40
647 2808 2.618241 GTGATTCCAACAAGTGACTGCA 59.382 45.455 0.00 0.00 0.00 4.41
648 2809 3.254166 GTGATTCCAACAAGTGACTGCAT 59.746 43.478 0.00 0.00 0.00 3.96
649 2810 4.455533 GTGATTCCAACAAGTGACTGCATA 59.544 41.667 0.00 0.00 0.00 3.14
650 2811 4.455533 TGATTCCAACAAGTGACTGCATAC 59.544 41.667 0.00 0.00 0.00 2.39
651 2812 2.412870 TCCAACAAGTGACTGCATACG 58.587 47.619 0.00 0.00 0.00 3.06
652 2813 1.464608 CCAACAAGTGACTGCATACGG 59.535 52.381 0.00 0.00 0.00 4.02
653 2814 2.412870 CAACAAGTGACTGCATACGGA 58.587 47.619 0.00 0.00 0.00 4.69
654 2815 2.370281 ACAAGTGACTGCATACGGAG 57.630 50.000 0.00 0.00 36.48 4.63
655 2816 1.066858 ACAAGTGACTGCATACGGAGG 60.067 52.381 0.00 0.00 34.24 4.30
656 2817 0.108138 AAGTGACTGCATACGGAGGC 60.108 55.000 0.00 0.00 39.59 4.70
658 2819 4.932789 GACTGCATACGGAGGCAA 57.067 55.556 8.93 0.00 42.83 4.52
659 2820 3.153024 GACTGCATACGGAGGCAAA 57.847 52.632 8.93 0.00 42.83 3.68
660 2821 1.448985 GACTGCATACGGAGGCAAAA 58.551 50.000 8.93 0.00 42.83 2.44
661 2822 1.398390 GACTGCATACGGAGGCAAAAG 59.602 52.381 8.93 0.00 42.83 2.27
662 2823 1.003118 ACTGCATACGGAGGCAAAAGA 59.997 47.619 8.93 0.00 42.83 2.52
663 2824 1.667724 CTGCATACGGAGGCAAAAGAG 59.332 52.381 8.93 0.00 42.83 2.85
664 2825 1.003118 TGCATACGGAGGCAAAAGAGT 59.997 47.619 3.49 0.00 39.95 3.24
665 2826 2.235155 TGCATACGGAGGCAAAAGAGTA 59.765 45.455 3.49 0.00 39.95 2.59
666 2827 3.267483 GCATACGGAGGCAAAAGAGTAA 58.733 45.455 0.00 0.00 30.94 2.24
667 2828 3.877508 GCATACGGAGGCAAAAGAGTAAT 59.122 43.478 0.00 0.00 30.94 1.89
668 2829 4.024809 GCATACGGAGGCAAAAGAGTAATC 60.025 45.833 0.00 0.00 30.94 1.75
669 2830 3.983044 ACGGAGGCAAAAGAGTAATCT 57.017 42.857 0.00 0.00 0.00 2.40
670 2831 6.513180 CATACGGAGGCAAAAGAGTAATCTA 58.487 40.000 0.00 0.00 0.00 1.98
671 2832 4.756502 ACGGAGGCAAAAGAGTAATCTAC 58.243 43.478 0.00 0.00 0.00 2.59
672 2833 4.222145 ACGGAGGCAAAAGAGTAATCTACA 59.778 41.667 0.00 0.00 0.00 2.74
673 2834 5.104900 ACGGAGGCAAAAGAGTAATCTACAT 60.105 40.000 0.00 0.00 0.00 2.29
674 2835 5.817816 CGGAGGCAAAAGAGTAATCTACATT 59.182 40.000 0.00 0.00 0.00 2.71
675 2836 6.316390 CGGAGGCAAAAGAGTAATCTACATTT 59.684 38.462 0.00 0.00 0.00 2.32
676 2837 7.148239 CGGAGGCAAAAGAGTAATCTACATTTT 60.148 37.037 0.00 0.00 33.16 1.82
677 2838 9.174166 GGAGGCAAAAGAGTAATCTACATTTTA 57.826 33.333 0.00 0.00 32.31 1.52
712 2873 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
713 2874 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
714 2875 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
715 2876 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
716 2877 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
717 2878 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
718 2879 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
719 2880 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
720 2881 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
721 2882 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
722 2883 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
723 2884 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
724 2885 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
725 2886 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
726 2887 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
727 2888 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
728 2889 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
733 2894 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
734 2895 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
751 2912 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
752 2913 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
753 2914 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
754 2915 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
874 3054 3.007182 AGTGTTTTGGCAAATGCTAGCAT 59.993 39.130 24.67 24.67 41.70 3.79
880 3074 2.549329 TGGCAAATGCTAGCATGATACG 59.451 45.455 30.19 17.01 41.70 3.06
944 3140 8.734386 GTTGCCATCCTAATTATATTGAGGAAG 58.266 37.037 5.04 1.58 41.37 3.46
1197 3393 1.529226 TGGACATTCGAAACCGCAAT 58.471 45.000 0.00 0.00 0.00 3.56
1418 3616 4.709397 AGACCTTTCACACCTATCAGAGAG 59.291 45.833 0.00 0.00 0.00 3.20
1510 3711 3.433615 AGAGCTAGCAAACATTTCACGTC 59.566 43.478 18.83 0.28 0.00 4.34
1548 3752 1.831736 CTAGTGGGGGTCGACAAGAAT 59.168 52.381 18.91 0.75 0.00 2.40
1596 3800 1.401905 GGTGATCATTTGGAACGCTCC 59.598 52.381 0.00 0.00 42.81 4.70
1632 3836 1.410224 GGAATGGGAGGGCTTGGTAAG 60.410 57.143 0.00 0.00 0.00 2.34
1831 4035 6.017852 CCTTCAAGAGACGCTAAAGAAGTTTT 60.018 38.462 11.91 0.00 32.59 2.43
2080 4284 4.882671 ACGAATTATGAATGTCCAGTGC 57.117 40.909 0.00 0.00 0.00 4.40
2203 4407 8.884124 TGTGGAAGAATGGAGAAGAATAAATT 57.116 30.769 0.00 0.00 0.00 1.82
2389 4593 2.630592 GATCGCAGAGGGGTTCGTCC 62.631 65.000 0.00 0.00 43.63 4.79
2553 4757 3.118847 TGGCAGTTGATTTGTGCAAGAAA 60.119 39.130 0.00 0.00 39.05 2.52
2739 4956 4.466370 ACTTTACTACCTCTGCTATGCACA 59.534 41.667 0.00 0.00 33.79 4.57
2989 5206 7.857885 GGCACTTATTTGCTGTGATAGTAATTC 59.142 37.037 0.00 0.00 42.56 2.17
3214 5437 2.034812 CGGTACTTGTCCAGCCTAGATC 59.965 54.545 0.00 0.00 0.00 2.75
3231 5454 4.134379 AGATCTGAATGCAAGTGACGAT 57.866 40.909 0.00 0.00 0.00 3.73
3233 5456 5.288015 AGATCTGAATGCAAGTGACGATAG 58.712 41.667 0.00 0.00 46.19 2.08
3287 5510 2.884639 ACCTGCAAAAGCTACGTTTGAT 59.115 40.909 12.50 0.00 38.05 2.57
3288 5511 3.236816 CCTGCAAAAGCTACGTTTGATG 58.763 45.455 12.50 4.87 38.05 3.07
3367 5592 5.392380 GGGCAGAACTTGTATTCATTGTCTG 60.392 44.000 0.00 0.00 0.00 3.51
3370 5595 7.094805 GGCAGAACTTGTATTCATTGTCTGTTA 60.095 37.037 0.00 0.00 0.00 2.41
3399 5624 0.906756 CTGAGAGAAGACCCCCTGCA 60.907 60.000 0.00 0.00 0.00 4.41
3511 5736 7.296628 TCCCAAGCTAAAGATTCTCTATCTC 57.703 40.000 0.00 0.00 42.90 2.75
3514 5739 5.385509 AGCTAAAGATTCTCTATCTCGGC 57.614 43.478 0.00 0.00 42.90 5.54
3516 5741 3.651803 AAAGATTCTCTATCTCGGCGG 57.348 47.619 7.21 0.00 42.90 6.13
3605 5830 1.150827 CAAACTCAGCAGCATGACGA 58.849 50.000 0.00 0.00 39.69 4.20
3651 5876 2.022428 TCCTGCCCCTCCAGTATCTAAA 60.022 50.000 0.00 0.00 0.00 1.85
3664 5889 5.981315 CCAGTATCTAAACTTCCGCGAAATA 59.019 40.000 8.23 0.00 0.00 1.40
3669 5894 5.180271 TCTAAACTTCCGCGAAATAACCAT 58.820 37.500 8.23 0.00 0.00 3.55
3684 5909 0.400213 ACCATTGACTTCTTGGCGGA 59.600 50.000 0.00 0.00 33.66 5.54
3788 6037 1.257155 GTACGCGTGCAAGCTATTACC 59.743 52.381 24.59 1.03 34.40 2.85
3876 6134 5.295787 GGTGTTGGTTATGCAGATTCGATTA 59.704 40.000 0.00 0.00 0.00 1.75
3880 6138 6.844696 TGGTTATGCAGATTCGATTAAGTC 57.155 37.500 0.00 0.00 0.00 3.01
3987 6247 0.972134 TTGCTGCTGCTACTCTGAGT 59.028 50.000 15.57 15.57 40.48 3.41
4000 6260 7.441836 TGCTACTCTGAGTTTACAAGATGAAA 58.558 34.615 16.53 0.00 0.00 2.69
4005 6265 7.987458 ACTCTGAGTTTACAAGATGAAACTTCA 59.013 33.333 4.06 0.00 44.04 3.02
4006 6266 8.370493 TCTGAGTTTACAAGATGAAACTTCAG 57.630 34.615 14.22 14.22 44.04 3.02
4007 6267 6.959361 TGAGTTTACAAGATGAAACTTCAGC 58.041 36.000 0.00 0.00 44.04 4.26
4014 6274 1.328986 GATGAAACTTCAGCTAGCGGC 59.671 52.381 10.29 0.00 40.26 6.53
4015 6275 0.673644 TGAAACTTCAGCTAGCGGCC 60.674 55.000 10.29 0.00 43.05 6.13
4016 6276 0.391793 GAAACTTCAGCTAGCGGCCT 60.392 55.000 10.29 0.00 43.05 5.19
4038 6298 1.001378 GCGCTTCCTCTGCTTTTTCAA 60.001 47.619 0.00 0.00 0.00 2.69
4039 6299 2.919807 GCGCTTCCTCTGCTTTTTCAAG 60.920 50.000 0.00 0.00 0.00 3.02
4040 6300 2.549754 CGCTTCCTCTGCTTTTTCAAGA 59.450 45.455 0.00 0.00 30.57 3.02
4041 6301 3.608008 CGCTTCCTCTGCTTTTTCAAGAC 60.608 47.826 0.00 0.00 30.57 3.01
4042 6302 3.608008 GCTTCCTCTGCTTTTTCAAGACG 60.608 47.826 0.00 0.00 30.57 4.18
4044 6304 2.872245 TCCTCTGCTTTTTCAAGACGTG 59.128 45.455 0.00 0.00 30.57 4.49
4046 6306 3.807622 CCTCTGCTTTTTCAAGACGTGTA 59.192 43.478 0.00 0.00 30.57 2.90
4047 6307 4.318831 CCTCTGCTTTTTCAAGACGTGTAC 60.319 45.833 0.00 0.00 30.57 2.90
4048 6308 3.244345 TCTGCTTTTTCAAGACGTGTACG 59.756 43.478 0.00 2.43 46.33 3.67
4049 6309 2.285756 TGCTTTTTCAAGACGTGTACGG 59.714 45.455 9.40 0.00 44.95 4.02
4050 6310 2.540931 GCTTTTTCAAGACGTGTACGGA 59.459 45.455 9.40 0.00 44.95 4.69
4051 6311 3.603173 GCTTTTTCAAGACGTGTACGGAC 60.603 47.826 9.40 0.00 44.95 4.79
4052 6312 3.441496 TTTTCAAGACGTGTACGGACT 57.559 42.857 9.40 5.15 44.95 3.85
4053 6313 3.441496 TTTCAAGACGTGTACGGACTT 57.559 42.857 9.40 10.47 44.95 3.01
4055 6315 1.677576 TCAAGACGTGTACGGACTTGT 59.322 47.619 27.42 0.00 46.54 3.16
4056 6316 2.099592 TCAAGACGTGTACGGACTTGTT 59.900 45.455 27.42 7.51 46.54 2.83
4057 6317 2.412421 AGACGTGTACGGACTTGTTC 57.588 50.000 9.40 0.00 44.95 3.18
4058 6318 1.677576 AGACGTGTACGGACTTGTTCA 59.322 47.619 9.40 0.00 44.95 3.18
4059 6319 1.783140 GACGTGTACGGACTTGTTCAC 59.217 52.381 9.40 0.00 44.95 3.18
4060 6320 1.406539 ACGTGTACGGACTTGTTCACT 59.593 47.619 9.40 0.00 44.95 3.41
4061 6321 2.159198 ACGTGTACGGACTTGTTCACTT 60.159 45.455 9.40 0.00 44.95 3.16
4062 6322 2.470257 CGTGTACGGACTTGTTCACTTC 59.530 50.000 0.00 0.00 37.82 3.01
4063 6323 3.714391 GTGTACGGACTTGTTCACTTCT 58.286 45.455 0.00 0.00 37.23 2.85
4064 6324 3.489785 GTGTACGGACTTGTTCACTTCTG 59.510 47.826 0.00 0.00 37.23 3.02
4065 6325 3.382227 TGTACGGACTTGTTCACTTCTGA 59.618 43.478 0.00 0.00 0.00 3.27
4066 6326 3.753294 ACGGACTTGTTCACTTCTGAT 57.247 42.857 0.00 0.00 0.00 2.90
4067 6327 3.393800 ACGGACTTGTTCACTTCTGATG 58.606 45.455 0.00 0.00 0.00 3.07
4068 6328 2.158449 CGGACTTGTTCACTTCTGATGC 59.842 50.000 0.00 0.00 0.00 3.91
4069 6329 3.406764 GGACTTGTTCACTTCTGATGCT 58.593 45.455 0.00 0.00 0.00 3.79
4070 6330 3.188048 GGACTTGTTCACTTCTGATGCTG 59.812 47.826 0.00 0.00 0.00 4.41
4071 6331 2.551459 ACTTGTTCACTTCTGATGCTGC 59.449 45.455 0.00 0.00 0.00 5.25
4072 6332 2.556144 TGTTCACTTCTGATGCTGCT 57.444 45.000 0.00 0.00 0.00 4.24
4073 6333 3.683365 TGTTCACTTCTGATGCTGCTA 57.317 42.857 0.00 0.00 0.00 3.49
4074 6334 3.329386 TGTTCACTTCTGATGCTGCTAC 58.671 45.455 0.00 0.00 0.00 3.58
4075 6335 3.007290 TGTTCACTTCTGATGCTGCTACT 59.993 43.478 0.00 0.00 0.00 2.57
4076 6336 3.242549 TCACTTCTGATGCTGCTACTG 57.757 47.619 0.00 0.00 0.00 2.74
4077 6337 1.664659 CACTTCTGATGCTGCTACTGC 59.335 52.381 0.00 0.00 40.20 4.40
4078 6338 1.297664 CTTCTGATGCTGCTACTGCC 58.702 55.000 0.00 0.00 38.71 4.85
4079 6339 0.907486 TTCTGATGCTGCTACTGCCT 59.093 50.000 0.00 0.00 38.71 4.75
4080 6340 0.177373 TCTGATGCTGCTACTGCCTG 59.823 55.000 0.00 0.00 38.71 4.85
4081 6341 1.437772 CTGATGCTGCTACTGCCTGC 61.438 60.000 0.00 0.00 38.71 4.85
4082 6342 2.513204 ATGCTGCTACTGCCTGCG 60.513 61.111 0.00 0.00 39.36 5.18
4083 6343 3.320879 ATGCTGCTACTGCCTGCGT 62.321 57.895 0.00 0.00 39.36 5.24
4084 6344 2.743928 GCTGCTACTGCCTGCGTT 60.744 61.111 0.00 0.00 38.71 4.84
4085 6345 2.328099 GCTGCTACTGCCTGCGTTT 61.328 57.895 0.00 0.00 38.71 3.60
4086 6346 1.019278 GCTGCTACTGCCTGCGTTTA 61.019 55.000 0.00 0.00 38.71 2.01
4087 6347 0.721718 CTGCTACTGCCTGCGTTTAC 59.278 55.000 0.00 0.00 38.71 2.01
4088 6348 0.672401 TGCTACTGCCTGCGTTTACC 60.672 55.000 0.00 0.00 38.71 2.85
4089 6349 0.672401 GCTACTGCCTGCGTTTACCA 60.672 55.000 0.00 0.00 0.00 3.25
4090 6350 1.076332 CTACTGCCTGCGTTTACCAC 58.924 55.000 0.00 0.00 0.00 4.16
4091 6351 0.682852 TACTGCCTGCGTTTACCACT 59.317 50.000 0.00 0.00 0.00 4.00
4092 6352 0.884704 ACTGCCTGCGTTTACCACTG 60.885 55.000 0.00 0.00 0.00 3.66
4093 6353 2.187599 CTGCCTGCGTTTACCACTGC 62.188 60.000 0.00 0.00 0.00 4.40
4094 6354 1.966451 GCCTGCGTTTACCACTGCT 60.966 57.895 0.00 0.00 0.00 4.24
4095 6355 1.912371 GCCTGCGTTTACCACTGCTC 61.912 60.000 0.00 0.00 0.00 4.26
4096 6356 1.298859 CCTGCGTTTACCACTGCTCC 61.299 60.000 0.00 0.00 0.00 4.70
4097 6357 0.320771 CTGCGTTTACCACTGCTCCT 60.321 55.000 0.00 0.00 0.00 3.69
4098 6358 0.602638 TGCGTTTACCACTGCTCCTG 60.603 55.000 0.00 0.00 0.00 3.86
4099 6359 1.912371 GCGTTTACCACTGCTCCTGC 61.912 60.000 0.00 0.00 40.20 4.85
4100 6360 0.320771 CGTTTACCACTGCTCCTGCT 60.321 55.000 0.00 0.00 40.48 4.24
4101 6361 1.067142 CGTTTACCACTGCTCCTGCTA 60.067 52.381 0.00 0.00 40.48 3.49
4102 6362 2.347731 GTTTACCACTGCTCCTGCTAC 58.652 52.381 0.00 0.00 40.48 3.58
4103 6363 1.938585 TTACCACTGCTCCTGCTACT 58.061 50.000 0.00 0.00 40.48 2.57
4104 6364 1.938585 TACCACTGCTCCTGCTACTT 58.061 50.000 0.00 0.00 40.48 2.24
4105 6365 0.610687 ACCACTGCTCCTGCTACTTC 59.389 55.000 0.00 0.00 40.48 3.01
4106 6366 0.901124 CCACTGCTCCTGCTACTTCT 59.099 55.000 0.00 0.00 40.48 2.85
4107 6367 1.405256 CCACTGCTCCTGCTACTTCTG 60.405 57.143 0.00 0.00 40.48 3.02
4108 6368 0.901124 ACTGCTCCTGCTACTTCTGG 59.099 55.000 0.00 0.00 40.48 3.86
4109 6369 0.901124 CTGCTCCTGCTACTTCTGGT 59.099 55.000 0.00 0.00 40.48 4.00
4110 6370 0.610174 TGCTCCTGCTACTTCTGGTG 59.390 55.000 0.00 0.00 40.48 4.17
4111 6371 0.742635 GCTCCTGCTACTTCTGGTGC 60.743 60.000 0.00 0.00 37.39 5.01
4112 6372 0.901124 CTCCTGCTACTTCTGGTGCT 59.099 55.000 0.00 0.00 0.00 4.40
4113 6373 1.277557 CTCCTGCTACTTCTGGTGCTT 59.722 52.381 0.00 0.00 0.00 3.91
4114 6374 1.276421 TCCTGCTACTTCTGGTGCTTC 59.724 52.381 0.00 0.00 0.00 3.86
4115 6375 1.277557 CCTGCTACTTCTGGTGCTTCT 59.722 52.381 0.00 0.00 0.00 2.85
4116 6376 2.289945 CCTGCTACTTCTGGTGCTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
4117 6377 2.740981 CTGCTACTTCTGGTGCTTCTTG 59.259 50.000 0.00 0.00 0.00 3.02
4118 6378 2.104792 TGCTACTTCTGGTGCTTCTTGT 59.895 45.455 0.00 0.00 0.00 3.16
4119 6379 2.739379 GCTACTTCTGGTGCTTCTTGTC 59.261 50.000 0.00 0.00 0.00 3.18
4120 6380 3.803715 GCTACTTCTGGTGCTTCTTGTCA 60.804 47.826 0.00 0.00 0.00 3.58
4121 6381 3.281727 ACTTCTGGTGCTTCTTGTCAA 57.718 42.857 0.00 0.00 0.00 3.18
4122 6382 3.209410 ACTTCTGGTGCTTCTTGTCAAG 58.791 45.455 6.21 6.21 0.00 3.02
4135 6395 7.923888 GCTTCTTGTCAAGCATGATAATTAGA 58.076 34.615 7.78 0.00 46.93 2.10
4136 6396 8.566260 GCTTCTTGTCAAGCATGATAATTAGAT 58.434 33.333 7.78 0.00 46.93 1.98
4137 6397 9.880064 CTTCTTGTCAAGCATGATAATTAGATG 57.120 33.333 7.78 3.79 36.29 2.90
4138 6398 7.868775 TCTTGTCAAGCATGATAATTAGATGC 58.131 34.615 18.34 18.34 42.37 3.91
4139 6399 6.564709 TGTCAAGCATGATAATTAGATGCC 57.435 37.500 20.75 11.23 42.93 4.40
4140 6400 6.063404 TGTCAAGCATGATAATTAGATGCCA 58.937 36.000 20.75 12.93 42.93 4.92
4141 6401 6.016860 TGTCAAGCATGATAATTAGATGCCAC 60.017 38.462 20.75 16.74 42.93 5.01
4142 6402 6.206243 GTCAAGCATGATAATTAGATGCCACT 59.794 38.462 20.75 9.40 42.93 4.00
4143 6403 6.774170 TCAAGCATGATAATTAGATGCCACTT 59.226 34.615 20.75 11.33 42.93 3.16
4144 6404 7.938490 TCAAGCATGATAATTAGATGCCACTTA 59.062 33.333 20.75 7.14 42.93 2.24
4145 6405 8.737175 CAAGCATGATAATTAGATGCCACTTAT 58.263 33.333 20.75 6.27 42.93 1.73
4146 6406 8.874744 AGCATGATAATTAGATGCCACTTATT 57.125 30.769 20.75 5.76 42.93 1.40
4147 6407 8.737175 AGCATGATAATTAGATGCCACTTATTG 58.263 33.333 20.75 1.04 42.93 1.90
4148 6408 8.517878 GCATGATAATTAGATGCCACTTATTGT 58.482 33.333 16.37 0.00 37.17 2.71
4154 6414 7.658179 ATTAGATGCCACTTATTGTATGACG 57.342 36.000 0.00 0.00 0.00 4.35
4155 6415 5.023533 AGATGCCACTTATTGTATGACGT 57.976 39.130 0.00 0.00 0.00 4.34
4156 6416 4.811024 AGATGCCACTTATTGTATGACGTG 59.189 41.667 0.00 0.00 0.00 4.49
4157 6417 3.932822 TGCCACTTATTGTATGACGTGT 58.067 40.909 0.00 0.00 0.00 4.49
4158 6418 4.320023 TGCCACTTATTGTATGACGTGTT 58.680 39.130 0.00 0.00 0.00 3.32
4159 6419 4.757657 TGCCACTTATTGTATGACGTGTTT 59.242 37.500 0.00 0.00 0.00 2.83
4160 6420 5.239744 TGCCACTTATTGTATGACGTGTTTT 59.760 36.000 0.00 0.00 0.00 2.43
4161 6421 5.793457 GCCACTTATTGTATGACGTGTTTTC 59.207 40.000 0.00 0.00 0.00 2.29
4162 6422 6.566942 GCCACTTATTGTATGACGTGTTTTCA 60.567 38.462 0.00 0.00 0.00 2.69
4163 6423 7.526608 CCACTTATTGTATGACGTGTTTTCAT 58.473 34.615 0.00 0.00 37.47 2.57
4164 6424 8.020819 CCACTTATTGTATGACGTGTTTTCATT 58.979 33.333 0.00 0.00 35.31 2.57
4165 6425 9.393249 CACTTATTGTATGACGTGTTTTCATTT 57.607 29.630 0.00 0.00 35.31 2.32
4166 6426 9.959749 ACTTATTGTATGACGTGTTTTCATTTT 57.040 25.926 0.00 0.00 35.31 1.82
4168 6428 9.952188 TTATTGTATGACGTGTTTTCATTTTCA 57.048 25.926 0.00 0.00 35.31 2.69
4169 6429 7.906611 TTGTATGACGTGTTTTCATTTTCAG 57.093 32.000 0.00 0.00 35.31 3.02
4170 6430 7.252965 TGTATGACGTGTTTTCATTTTCAGA 57.747 32.000 0.00 0.00 35.31 3.27
4171 6431 7.129622 TGTATGACGTGTTTTCATTTTCAGAC 58.870 34.615 0.00 0.00 35.31 3.51
4172 6432 5.811399 TGACGTGTTTTCATTTTCAGACT 57.189 34.783 0.00 0.00 0.00 3.24
4173 6433 6.912203 TGACGTGTTTTCATTTTCAGACTA 57.088 33.333 0.00 0.00 0.00 2.59
4174 6434 7.490962 TGACGTGTTTTCATTTTCAGACTAT 57.509 32.000 0.00 0.00 0.00 2.12
4175 6435 7.925993 TGACGTGTTTTCATTTTCAGACTATT 58.074 30.769 0.00 0.00 0.00 1.73
4176 6436 8.402472 TGACGTGTTTTCATTTTCAGACTATTT 58.598 29.630 0.00 0.00 0.00 1.40
4177 6437 9.233232 GACGTGTTTTCATTTTCAGACTATTTT 57.767 29.630 0.00 0.00 0.00 1.82
4203 6463 4.273969 CCTTTGCGTTACCTGTTTGAACTA 59.726 41.667 0.00 0.00 0.00 2.24
4207 6467 4.508861 TGCGTTACCTGTTTGAACTACTTC 59.491 41.667 0.00 0.00 0.00 3.01
4218 6478 7.439381 TGTTTGAACTACTTCCTTCTATTCGT 58.561 34.615 0.00 0.00 0.00 3.85
4219 6479 7.384115 TGTTTGAACTACTTCCTTCTATTCGTG 59.616 37.037 0.00 0.00 0.00 4.35
4220 6480 6.585695 TGAACTACTTCCTTCTATTCGTGT 57.414 37.500 0.00 0.00 0.00 4.49
4221 6481 6.387465 TGAACTACTTCCTTCTATTCGTGTG 58.613 40.000 0.00 0.00 0.00 3.82
4222 6482 4.745649 ACTACTTCCTTCTATTCGTGTGC 58.254 43.478 0.00 0.00 0.00 4.57
4242 6515 2.093783 GCGCTGGTTGTGAACTATGTAC 59.906 50.000 0.00 0.00 0.00 2.90
4259 6532 2.287608 TGTACGATATCGCCTGCTTCAG 60.288 50.000 24.59 0.00 44.43 3.02
4291 6564 9.900264 GCTGTTAAATAAAAGACTTTGTTTGTG 57.100 29.630 16.16 8.49 36.75 3.33
4311 6584 8.615211 GTTTGTGATTCATATGCTCAGATGTTA 58.385 33.333 7.75 0.00 32.28 2.41
4323 6596 4.906423 CTCAGATGTTAATTGTGAGCAGC 58.094 43.478 3.59 0.00 0.00 5.25
4324 6597 4.325972 TCAGATGTTAATTGTGAGCAGCA 58.674 39.130 0.00 0.00 0.00 4.41
4349 6623 1.226542 CACAGGCAGCCCATGATCT 59.773 57.895 8.22 0.00 0.00 2.75
4354 6628 1.890979 GCAGCCCATGATCTCACCG 60.891 63.158 0.00 0.00 0.00 4.94
4356 6630 2.190313 GCCCATGATCTCACCGCA 59.810 61.111 0.00 0.00 0.00 5.69
4359 6633 1.512996 CCCATGATCTCACCGCATGC 61.513 60.000 7.91 7.91 38.40 4.06
4360 6634 0.816421 CCATGATCTCACCGCATGCA 60.816 55.000 19.57 0.00 38.40 3.96
4367 6641 1.825285 CTCACCGCATGCACGCTATC 61.825 60.000 19.57 0.00 0.00 2.08
4375 6649 0.249784 ATGCACGCTATCTCTGCCTG 60.250 55.000 0.00 0.00 0.00 4.85
4381 6655 1.203523 CGCTATCTCTGCCTGGATACC 59.796 57.143 0.00 0.00 0.00 2.73
4382 6656 1.552792 GCTATCTCTGCCTGGATACCC 59.447 57.143 0.00 0.00 0.00 3.69
4383 6657 2.894731 CTATCTCTGCCTGGATACCCA 58.105 52.381 0.00 0.00 40.95 4.51
4388 6662 1.291033 TCTGCCTGGATACCCACTACT 59.709 52.381 0.00 0.00 37.58 2.57
4391 6665 3.507411 TGCCTGGATACCCACTACTATC 58.493 50.000 0.00 0.00 37.58 2.08
4392 6666 3.116900 TGCCTGGATACCCACTACTATCA 60.117 47.826 0.00 0.00 37.58 2.15
4409 6683 0.178891 TCAAGAGGGAGAAGGCCACT 60.179 55.000 5.01 3.29 0.00 4.00
4410 6684 1.078823 TCAAGAGGGAGAAGGCCACTA 59.921 52.381 5.01 0.00 0.00 2.74
4417 6691 1.834263 GGAGAAGGCCACTACTGACAT 59.166 52.381 5.01 0.00 0.00 3.06
4430 6712 1.271054 ACTGACATTGTCCTCTGCCAC 60.271 52.381 14.05 0.00 0.00 5.01
4431 6713 0.764271 TGACATTGTCCTCTGCCACA 59.236 50.000 14.05 0.00 0.00 4.17
4437 6719 3.640407 TCCTCTGCCACACCTGCC 61.640 66.667 0.00 0.00 0.00 4.85
4438 6720 3.957586 CCTCTGCCACACCTGCCA 61.958 66.667 0.00 0.00 0.00 4.92
4446 6728 1.373748 CACACCTGCCATTTGCTGC 60.374 57.895 0.00 0.00 42.00 5.25
4447 6729 1.532316 ACACCTGCCATTTGCTGCT 60.532 52.632 0.00 0.00 42.00 4.24
4448 6730 1.117142 ACACCTGCCATTTGCTGCTT 61.117 50.000 0.00 0.00 42.00 3.91
4449 6731 0.389426 CACCTGCCATTTGCTGCTTC 60.389 55.000 0.00 0.00 42.00 3.86
4478 6760 1.190178 AGGTAAGTGGACACCGGACC 61.190 60.000 9.46 9.43 39.94 4.46
4523 6820 4.576463 CCATCTTGTATTTTAGCGGCTTCT 59.424 41.667 8.26 0.00 0.00 2.85
4524 6821 5.066505 CCATCTTGTATTTTAGCGGCTTCTT 59.933 40.000 8.26 0.00 0.00 2.52
4525 6822 5.545658 TCTTGTATTTTAGCGGCTTCTTG 57.454 39.130 8.26 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.447586 ACTAGTGTATCCACGATGCAAGT 59.552 43.478 0.00 0.00 46.56 3.16
72 73 8.079203 AGTCATGCTCACTTTAGTATATCTTCG 58.921 37.037 0.00 0.00 0.00 3.79
107 108 5.920840 ACCGTAACTAAAACGACCTTAACTC 59.079 40.000 0.00 0.00 42.90 3.01
109 110 7.812309 ATACCGTAACTAAAACGACCTTAAC 57.188 36.000 0.00 0.00 42.90 2.01
182 202 8.946085 TGTAGCGAATCAAGAAAATGAATAAGT 58.054 29.630 0.00 0.00 32.06 2.24
263 284 9.560860 TCAACACCCATCTAATAGTATATCCAT 57.439 33.333 0.00 0.00 0.00 3.41
349 371 3.523564 ACCAAGATAACATACCTGCCAGT 59.476 43.478 0.00 0.00 0.00 4.00
389 411 7.616313 AGTTCCCAAATGTTGAAGTTTTAACA 58.384 30.769 4.93 4.93 40.65 2.41
593 2754 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
594 2755 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
595 2756 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
596 2757 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
597 2758 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
598 2759 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
599 2760 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
600 2761 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
601 2762 7.985752 ACTAGAAAGACTTATATTTGGGAACGG 59.014 37.037 0.00 0.00 0.00 4.44
602 2763 8.818057 CACTAGAAAGACTTATATTTGGGAACG 58.182 37.037 0.00 0.00 0.00 3.95
603 2764 9.886132 TCACTAGAAAGACTTATATTTGGGAAC 57.114 33.333 0.00 0.00 0.00 3.62
613 2774 9.442047 CTTGTTGGAATCACTAGAAAGACTTAT 57.558 33.333 0.00 0.00 0.00 1.73
614 2775 8.429641 ACTTGTTGGAATCACTAGAAAGACTTA 58.570 33.333 0.00 0.00 0.00 2.24
615 2776 7.227512 CACTTGTTGGAATCACTAGAAAGACTT 59.772 37.037 0.00 0.00 0.00 3.01
616 2777 6.708054 CACTTGTTGGAATCACTAGAAAGACT 59.292 38.462 0.00 0.00 0.00 3.24
617 2778 6.706270 TCACTTGTTGGAATCACTAGAAAGAC 59.294 38.462 0.00 0.00 0.00 3.01
618 2779 6.706270 GTCACTTGTTGGAATCACTAGAAAGA 59.294 38.462 0.00 0.00 0.00 2.52
619 2780 6.708054 AGTCACTTGTTGGAATCACTAGAAAG 59.292 38.462 0.00 0.00 0.00 2.62
620 2781 6.483307 CAGTCACTTGTTGGAATCACTAGAAA 59.517 38.462 0.00 0.00 0.00 2.52
621 2782 5.991606 CAGTCACTTGTTGGAATCACTAGAA 59.008 40.000 0.00 0.00 0.00 2.10
622 2783 5.541845 CAGTCACTTGTTGGAATCACTAGA 58.458 41.667 0.00 0.00 0.00 2.43
623 2784 4.153117 GCAGTCACTTGTTGGAATCACTAG 59.847 45.833 0.00 0.00 0.00 2.57
624 2785 4.065088 GCAGTCACTTGTTGGAATCACTA 58.935 43.478 0.00 0.00 0.00 2.74
625 2786 2.880890 GCAGTCACTTGTTGGAATCACT 59.119 45.455 0.00 0.00 0.00 3.41
626 2787 2.618241 TGCAGTCACTTGTTGGAATCAC 59.382 45.455 0.00 0.00 0.00 3.06
627 2788 2.929641 TGCAGTCACTTGTTGGAATCA 58.070 42.857 0.00 0.00 0.00 2.57
628 2789 4.436050 CGTATGCAGTCACTTGTTGGAATC 60.436 45.833 0.00 0.00 0.00 2.52
629 2790 3.436704 CGTATGCAGTCACTTGTTGGAAT 59.563 43.478 0.00 0.00 0.00 3.01
630 2791 2.805671 CGTATGCAGTCACTTGTTGGAA 59.194 45.455 0.00 0.00 0.00 3.53
631 2792 2.412870 CGTATGCAGTCACTTGTTGGA 58.587 47.619 0.00 0.00 0.00 3.53
632 2793 1.464608 CCGTATGCAGTCACTTGTTGG 59.535 52.381 0.00 0.00 0.00 3.77
633 2794 2.412870 TCCGTATGCAGTCACTTGTTG 58.587 47.619 0.00 0.00 0.00 3.33
634 2795 2.612972 CCTCCGTATGCAGTCACTTGTT 60.613 50.000 0.00 0.00 0.00 2.83
635 2796 1.066858 CCTCCGTATGCAGTCACTTGT 60.067 52.381 0.00 0.00 0.00 3.16
636 2797 1.645034 CCTCCGTATGCAGTCACTTG 58.355 55.000 0.00 0.00 0.00 3.16
637 2798 0.108138 GCCTCCGTATGCAGTCACTT 60.108 55.000 0.00 0.00 0.00 3.16
638 2799 1.257750 TGCCTCCGTATGCAGTCACT 61.258 55.000 0.00 0.00 32.77 3.41
639 2800 0.391130 TTGCCTCCGTATGCAGTCAC 60.391 55.000 0.00 0.00 38.95 3.67
640 2801 0.323302 TTTGCCTCCGTATGCAGTCA 59.677 50.000 0.00 0.00 38.95 3.41
641 2802 1.398390 CTTTTGCCTCCGTATGCAGTC 59.602 52.381 0.00 0.00 38.95 3.51
642 2803 1.003118 TCTTTTGCCTCCGTATGCAGT 59.997 47.619 0.00 0.00 38.95 4.40
643 2804 1.667724 CTCTTTTGCCTCCGTATGCAG 59.332 52.381 0.00 0.00 38.95 4.41
644 2805 1.003118 ACTCTTTTGCCTCCGTATGCA 59.997 47.619 0.00 0.00 35.27 3.96
645 2806 1.739067 ACTCTTTTGCCTCCGTATGC 58.261 50.000 0.00 0.00 0.00 3.14
646 2807 5.360591 AGATTACTCTTTTGCCTCCGTATG 58.639 41.667 0.00 0.00 0.00 2.39
647 2808 5.615925 AGATTACTCTTTTGCCTCCGTAT 57.384 39.130 0.00 0.00 0.00 3.06
648 2809 5.419788 TGTAGATTACTCTTTTGCCTCCGTA 59.580 40.000 0.00 0.00 32.66 4.02
649 2810 3.983044 AGATTACTCTTTTGCCTCCGT 57.017 42.857 0.00 0.00 0.00 4.69
650 2811 4.755411 TGTAGATTACTCTTTTGCCTCCG 58.245 43.478 0.00 0.00 32.66 4.63
651 2812 7.631717 AAATGTAGATTACTCTTTTGCCTCC 57.368 36.000 0.00 0.00 32.66 4.30
690 2851 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
691 2852 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
693 2854 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
694 2855 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
695 2856 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
696 2857 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
697 2858 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
698 2859 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
699 2860 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
700 2861 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
701 2862 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
702 2863 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
707 2868 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
708 2869 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
725 2886 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
726 2887 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
727 2888 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
728 2889 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
729 2890 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
730 2891 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
731 2892 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
732 2893 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
733 2894 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
734 2895 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
735 2896 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
736 2897 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
737 2898 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
738 2899 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
739 2900 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
740 2901 3.782523 TCTAACTACTCCCTCCGTTCCTA 59.217 47.826 0.00 0.00 0.00 2.94
741 2902 2.579860 TCTAACTACTCCCTCCGTTCCT 59.420 50.000 0.00 0.00 0.00 3.36
742 2903 3.010200 TCTAACTACTCCCTCCGTTCC 57.990 52.381 0.00 0.00 0.00 3.62
743 2904 4.761227 CCTATCTAACTACTCCCTCCGTTC 59.239 50.000 0.00 0.00 0.00 3.95
744 2905 4.727677 CCTATCTAACTACTCCCTCCGTT 58.272 47.826 0.00 0.00 0.00 4.44
745 2906 3.498301 GCCTATCTAACTACTCCCTCCGT 60.498 52.174 0.00 0.00 0.00 4.69
746 2907 3.083293 GCCTATCTAACTACTCCCTCCG 58.917 54.545 0.00 0.00 0.00 4.63
747 2908 4.391683 AGCCTATCTAACTACTCCCTCC 57.608 50.000 0.00 0.00 0.00 4.30
944 3140 2.683362 GTGGTGGCCTAGCTGTTTATTC 59.317 50.000 3.32 0.00 0.00 1.75
1510 3711 1.118838 AGATCTTCCTCCTCAAGGCG 58.881 55.000 0.00 0.00 45.78 5.52
1548 3752 6.166279 CAACCACTGCTGAAGTAATTCTCTA 58.834 40.000 4.35 0.00 36.83 2.43
1831 4035 5.534278 TGATCAAATACTTGTGTTGCTCCAA 59.466 36.000 0.00 0.00 33.94 3.53
1867 4071 9.927081 ATCATTAAATACTTCTGGAGTCCAAAT 57.073 29.630 14.17 3.76 39.86 2.32
2050 4254 8.421002 TGGACATTCATAATTCGTATCTCTTGA 58.579 33.333 0.00 0.00 0.00 3.02
2080 4284 3.817084 TCATCAGACAAAGGCTTCAACTG 59.183 43.478 16.06 16.06 0.00 3.16
2343 4547 2.857748 CCGCACAAGTTGTTTCCTTTTC 59.142 45.455 5.57 0.00 0.00 2.29
2389 4593 1.277273 TGTGCATTCACCTCTCTCCTG 59.723 52.381 0.00 0.00 42.46 3.86
2553 4757 7.558444 TCCTCATAACTAACACCAAAACAGTTT 59.442 33.333 0.00 0.00 32.09 2.66
2588 4793 3.036819 CCATCCATCTCAAGAGACTCCA 58.963 50.000 1.20 0.00 40.75 3.86
2650 4861 3.132646 TGGTGCATATTGGAAAATGGCTC 59.867 43.478 0.00 0.00 0.00 4.70
2739 4956 6.975196 AGCACTGTCATATATCTTGACTCT 57.025 37.500 15.78 8.02 43.12 3.24
3214 5437 4.176271 TCACTATCGTCACTTGCATTCAG 58.824 43.478 0.00 0.00 0.00 3.02
3231 5454 6.042093 AGACATTCAACAAGAGAACCTCACTA 59.958 38.462 0.00 0.00 32.06 2.74
3233 5456 5.049818 CAGACATTCAACAAGAGAACCTCAC 60.050 44.000 0.00 0.00 32.06 3.51
3287 5510 3.458163 CTTCCGCTAGTCGCCCCA 61.458 66.667 0.00 0.00 36.73 4.96
3288 5511 4.222847 CCTTCCGCTAGTCGCCCC 62.223 72.222 0.00 0.00 36.73 5.80
3367 5592 5.635700 GTCTTCTCTCAGTTGTGACCATAAC 59.364 44.000 2.02 2.02 33.35 1.89
3370 5595 3.007398 GGTCTTCTCTCAGTTGTGACCAT 59.993 47.826 0.00 0.00 41.29 3.55
3399 5624 3.502123 TTGACAACCGAGAAAGGGATT 57.498 42.857 0.00 0.00 35.02 3.01
3439 5664 2.688446 CTCTCCGTTGTATGCTCTGGTA 59.312 50.000 0.00 0.00 0.00 3.25
3514 5739 0.249657 GACTCAGATTAGGCAGGCCG 60.250 60.000 4.37 0.00 41.95 6.13
3516 5741 0.249657 CCGACTCAGATTAGGCAGGC 60.250 60.000 0.00 0.00 0.00 4.85
3579 5804 1.267806 TGCTGCTGAGTTTGCTTAAGC 59.732 47.619 20.84 20.84 42.50 3.09
3589 5814 0.390866 CCTTCGTCATGCTGCTGAGT 60.391 55.000 0.00 0.00 0.00 3.41
3605 5830 1.304713 CAATGCCAGCTGGGACCTT 60.305 57.895 33.46 20.37 38.75 3.50
3651 5876 3.126343 GTCAATGGTTATTTCGCGGAAGT 59.874 43.478 5.81 0.00 0.00 3.01
3664 5889 1.202879 TCCGCCAAGAAGTCAATGGTT 60.203 47.619 5.41 0.00 36.57 3.67
3669 5894 0.603707 CAGCTCCGCCAAGAAGTCAA 60.604 55.000 0.00 0.00 0.00 3.18
3773 6013 4.181578 ACTAGTTGGTAATAGCTTGCACG 58.818 43.478 0.00 0.00 0.00 5.34
3840 6092 7.284489 TGCATAACCAACACCCTATCTTAATTC 59.716 37.037 0.00 0.00 0.00 2.17
3845 6097 4.227300 TCTGCATAACCAACACCCTATCTT 59.773 41.667 0.00 0.00 0.00 2.40
3846 6098 3.780294 TCTGCATAACCAACACCCTATCT 59.220 43.478 0.00 0.00 0.00 1.98
3851 6109 2.097466 CGAATCTGCATAACCAACACCC 59.903 50.000 0.00 0.00 0.00 4.61
3930 6190 3.432252 CGTCTTGTAAACGCAGAGGAAAT 59.568 43.478 0.00 0.00 32.84 2.17
3987 6247 6.128553 CGCTAGCTGAAGTTTCATCTTGTAAA 60.129 38.462 13.93 0.00 35.50 2.01
4000 6260 2.022240 GCTAGGCCGCTAGCTGAAGT 62.022 60.000 13.93 0.00 46.32 3.01
4011 6271 3.532155 AGAGGAAGCGCTAGGCCG 61.532 66.667 12.05 0.00 45.17 6.13
4012 6272 2.107953 CAGAGGAAGCGCTAGGCC 59.892 66.667 12.05 13.38 45.17 5.19
4013 6273 2.585791 AAGCAGAGGAAGCGCTAGGC 62.586 60.000 12.05 8.58 44.05 3.93
4014 6274 0.107945 AAAGCAGAGGAAGCGCTAGG 60.108 55.000 12.05 0.00 34.11 3.02
4015 6275 1.731720 AAAAGCAGAGGAAGCGCTAG 58.268 50.000 12.05 0.00 34.11 3.42
4016 6276 2.076863 GAAAAAGCAGAGGAAGCGCTA 58.923 47.619 12.05 0.00 34.11 4.26
4038 6298 1.677576 TGAACAAGTCCGTACACGTCT 59.322 47.619 0.58 0.00 37.74 4.18
4039 6299 1.783140 GTGAACAAGTCCGTACACGTC 59.217 52.381 0.58 0.00 37.74 4.34
4040 6300 1.406539 AGTGAACAAGTCCGTACACGT 59.593 47.619 0.58 0.00 37.74 4.49
4041 6301 2.129823 AGTGAACAAGTCCGTACACG 57.870 50.000 0.00 0.00 39.44 4.49
4042 6302 3.489785 CAGAAGTGAACAAGTCCGTACAC 59.510 47.826 0.00 0.00 0.00 2.90
4044 6304 3.973657 TCAGAAGTGAACAAGTCCGTAC 58.026 45.455 0.00 0.00 0.00 3.67
4046 6306 3.393800 CATCAGAAGTGAACAAGTCCGT 58.606 45.455 0.00 0.00 35.88 4.69
4047 6307 2.158449 GCATCAGAAGTGAACAAGTCCG 59.842 50.000 0.00 0.00 35.88 4.79
4048 6308 3.188048 CAGCATCAGAAGTGAACAAGTCC 59.812 47.826 0.00 0.00 35.88 3.85
4049 6309 3.364764 GCAGCATCAGAAGTGAACAAGTC 60.365 47.826 0.00 0.00 35.88 3.01
4050 6310 2.551459 GCAGCATCAGAAGTGAACAAGT 59.449 45.455 0.00 0.00 35.88 3.16
4051 6311 2.812591 AGCAGCATCAGAAGTGAACAAG 59.187 45.455 0.00 0.00 35.88 3.16
4052 6312 2.854963 AGCAGCATCAGAAGTGAACAA 58.145 42.857 0.00 0.00 35.88 2.83
4053 6313 2.556144 AGCAGCATCAGAAGTGAACA 57.444 45.000 0.00 0.00 35.88 3.18
4054 6314 3.370366 CAGTAGCAGCATCAGAAGTGAAC 59.630 47.826 0.00 0.00 35.88 3.18
4055 6315 3.593096 CAGTAGCAGCATCAGAAGTGAA 58.407 45.455 0.00 0.00 35.88 3.18
4056 6316 2.676176 GCAGTAGCAGCATCAGAAGTGA 60.676 50.000 0.00 0.00 41.58 3.41
4057 6317 1.664659 GCAGTAGCAGCATCAGAAGTG 59.335 52.381 0.00 0.00 41.58 3.16
4058 6318 1.406614 GGCAGTAGCAGCATCAGAAGT 60.407 52.381 0.00 0.00 44.61 3.01
4059 6319 1.134461 AGGCAGTAGCAGCATCAGAAG 60.134 52.381 0.00 0.00 44.61 2.85
4060 6320 0.907486 AGGCAGTAGCAGCATCAGAA 59.093 50.000 0.00 0.00 44.61 3.02
4061 6321 0.177373 CAGGCAGTAGCAGCATCAGA 59.823 55.000 0.00 0.00 44.61 3.27
4062 6322 1.437772 GCAGGCAGTAGCAGCATCAG 61.438 60.000 0.00 0.00 44.61 2.90
4063 6323 1.450848 GCAGGCAGTAGCAGCATCA 60.451 57.895 0.00 0.00 44.61 3.07
4064 6324 2.532256 CGCAGGCAGTAGCAGCATC 61.532 63.158 0.00 0.00 44.61 3.91
4065 6325 2.513204 CGCAGGCAGTAGCAGCAT 60.513 61.111 0.00 0.00 44.61 3.79
4066 6326 3.535629 AACGCAGGCAGTAGCAGCA 62.536 57.895 0.00 0.00 44.61 4.41
4067 6327 1.019278 TAAACGCAGGCAGTAGCAGC 61.019 55.000 0.00 0.00 44.61 5.25
4068 6328 0.721718 GTAAACGCAGGCAGTAGCAG 59.278 55.000 0.00 0.00 44.61 4.24
4069 6329 0.672401 GGTAAACGCAGGCAGTAGCA 60.672 55.000 0.00 0.00 44.61 3.49
4070 6330 0.672401 TGGTAAACGCAGGCAGTAGC 60.672 55.000 0.00 0.00 41.10 3.58
4071 6331 1.076332 GTGGTAAACGCAGGCAGTAG 58.924 55.000 0.00 0.00 0.00 2.57
4072 6332 0.682852 AGTGGTAAACGCAGGCAGTA 59.317 50.000 0.00 0.00 0.00 2.74
4073 6333 0.884704 CAGTGGTAAACGCAGGCAGT 60.885 55.000 0.00 0.00 0.00 4.40
4074 6334 1.868997 CAGTGGTAAACGCAGGCAG 59.131 57.895 0.00 0.00 0.00 4.85
4075 6335 2.258013 GCAGTGGTAAACGCAGGCA 61.258 57.895 0.00 0.00 33.87 4.75
4076 6336 1.912371 GAGCAGTGGTAAACGCAGGC 61.912 60.000 0.00 0.00 32.81 4.85
4077 6337 1.298859 GGAGCAGTGGTAAACGCAGG 61.299 60.000 0.00 0.00 32.81 4.85
4078 6338 0.320771 AGGAGCAGTGGTAAACGCAG 60.321 55.000 0.00 0.00 32.81 5.18
4079 6339 0.602638 CAGGAGCAGTGGTAAACGCA 60.603 55.000 0.00 0.00 32.81 5.24
4080 6340 1.912371 GCAGGAGCAGTGGTAAACGC 61.912 60.000 0.00 0.00 41.58 4.84
4081 6341 0.320771 AGCAGGAGCAGTGGTAAACG 60.321 55.000 0.00 0.00 45.49 3.60
4082 6342 2.028020 AGTAGCAGGAGCAGTGGTAAAC 60.028 50.000 0.00 0.00 45.49 2.01
4083 6343 2.257207 AGTAGCAGGAGCAGTGGTAAA 58.743 47.619 0.00 0.00 45.49 2.01
4084 6344 1.938585 AGTAGCAGGAGCAGTGGTAA 58.061 50.000 0.00 0.00 45.49 2.85
4085 6345 1.825474 GAAGTAGCAGGAGCAGTGGTA 59.175 52.381 0.00 0.00 45.49 3.25
4086 6346 0.610687 GAAGTAGCAGGAGCAGTGGT 59.389 55.000 0.00 0.00 45.49 4.16
4087 6347 0.901124 AGAAGTAGCAGGAGCAGTGG 59.099 55.000 0.00 0.00 45.49 4.00
4088 6348 1.405256 CCAGAAGTAGCAGGAGCAGTG 60.405 57.143 0.00 0.00 45.49 3.66
4089 6349 0.901124 CCAGAAGTAGCAGGAGCAGT 59.099 55.000 0.00 0.00 45.49 4.40
4090 6350 0.901124 ACCAGAAGTAGCAGGAGCAG 59.099 55.000 0.00 0.00 45.49 4.24
4091 6351 0.610174 CACCAGAAGTAGCAGGAGCA 59.390 55.000 0.00 0.00 45.49 4.26
4092 6352 0.742635 GCACCAGAAGTAGCAGGAGC 60.743 60.000 0.00 0.00 42.56 4.70
4093 6353 0.901124 AGCACCAGAAGTAGCAGGAG 59.099 55.000 0.00 0.00 0.00 3.69
4094 6354 1.276421 GAAGCACCAGAAGTAGCAGGA 59.724 52.381 0.00 0.00 0.00 3.86
4095 6355 1.277557 AGAAGCACCAGAAGTAGCAGG 59.722 52.381 0.00 0.00 0.00 4.85
4096 6356 2.740981 CAAGAAGCACCAGAAGTAGCAG 59.259 50.000 0.00 0.00 0.00 4.24
4097 6357 2.104792 ACAAGAAGCACCAGAAGTAGCA 59.895 45.455 0.00 0.00 0.00 3.49
4098 6358 2.739379 GACAAGAAGCACCAGAAGTAGC 59.261 50.000 0.00 0.00 0.00 3.58
4099 6359 3.995199 TGACAAGAAGCACCAGAAGTAG 58.005 45.455 0.00 0.00 0.00 2.57
4100 6360 4.380531 CTTGACAAGAAGCACCAGAAGTA 58.619 43.478 9.76 0.00 0.00 2.24
4101 6361 3.209410 CTTGACAAGAAGCACCAGAAGT 58.791 45.455 9.76 0.00 0.00 3.01
4102 6362 2.031333 GCTTGACAAGAAGCACCAGAAG 60.031 50.000 19.51 0.00 46.46 2.85
4103 6363 1.949525 GCTTGACAAGAAGCACCAGAA 59.050 47.619 19.51 0.00 46.46 3.02
4104 6364 1.597742 GCTTGACAAGAAGCACCAGA 58.402 50.000 19.51 0.00 46.46 3.86
4111 6371 9.880064 CATCTAATTATCATGCTTGACAAGAAG 57.120 33.333 19.51 7.41 33.85 2.85
4112 6372 8.347771 GCATCTAATTATCATGCTTGACAAGAA 58.652 33.333 19.51 9.12 39.92 2.52
4113 6373 7.040892 GGCATCTAATTATCATGCTTGACAAGA 60.041 37.037 19.51 4.72 42.24 3.02
4114 6374 7.082602 GGCATCTAATTATCATGCTTGACAAG 58.917 38.462 20.73 11.02 42.24 3.16
4115 6375 6.546772 TGGCATCTAATTATCATGCTTGACAA 59.453 34.615 20.73 0.00 42.24 3.18
4116 6376 6.016860 GTGGCATCTAATTATCATGCTTGACA 60.017 38.462 20.73 12.26 42.24 3.58
4117 6377 6.206243 AGTGGCATCTAATTATCATGCTTGAC 59.794 38.462 20.73 16.34 42.24 3.18
4118 6378 6.301486 AGTGGCATCTAATTATCATGCTTGA 58.699 36.000 20.73 4.57 42.24 3.02
4119 6379 6.570672 AGTGGCATCTAATTATCATGCTTG 57.429 37.500 20.73 0.00 42.24 4.01
4120 6380 8.874744 ATAAGTGGCATCTAATTATCATGCTT 57.125 30.769 20.73 13.76 42.24 3.91
4121 6381 8.737175 CAATAAGTGGCATCTAATTATCATGCT 58.263 33.333 20.73 9.93 42.24 3.79
4122 6382 8.517878 ACAATAAGTGGCATCTAATTATCATGC 58.482 33.333 16.24 16.24 41.93 4.06
4128 6388 9.203421 CGTCATACAATAAGTGGCATCTAATTA 57.797 33.333 0.00 0.00 0.00 1.40
4129 6389 7.715249 ACGTCATACAATAAGTGGCATCTAATT 59.285 33.333 0.00 0.00 0.00 1.40
4130 6390 7.171508 CACGTCATACAATAAGTGGCATCTAAT 59.828 37.037 0.00 0.00 0.00 1.73
4131 6391 6.478673 CACGTCATACAATAAGTGGCATCTAA 59.521 38.462 0.00 0.00 0.00 2.10
4132 6392 5.983118 CACGTCATACAATAAGTGGCATCTA 59.017 40.000 0.00 0.00 0.00 1.98
4133 6393 4.811024 CACGTCATACAATAAGTGGCATCT 59.189 41.667 0.00 0.00 0.00 2.90
4134 6394 4.570772 ACACGTCATACAATAAGTGGCATC 59.429 41.667 0.00 0.00 34.28 3.91
4135 6395 4.513442 ACACGTCATACAATAAGTGGCAT 58.487 39.130 0.00 0.00 34.28 4.40
4136 6396 3.932822 ACACGTCATACAATAAGTGGCA 58.067 40.909 0.00 0.00 34.28 4.92
4137 6397 4.939509 AACACGTCATACAATAAGTGGC 57.060 40.909 0.00 0.00 34.28 5.01
4138 6398 6.893759 TGAAAACACGTCATACAATAAGTGG 58.106 36.000 0.00 0.00 34.28 4.00
4139 6399 8.948853 AATGAAAACACGTCATACAATAAGTG 57.051 30.769 0.00 0.00 34.60 3.16
4140 6400 9.959749 AAAATGAAAACACGTCATACAATAAGT 57.040 25.926 0.00 0.00 34.60 2.24
4142 6402 9.952188 TGAAAATGAAAACACGTCATACAATAA 57.048 25.926 0.00 0.00 34.60 1.40
4143 6403 9.605955 CTGAAAATGAAAACACGTCATACAATA 57.394 29.630 0.00 0.00 34.60 1.90
4144 6404 8.349245 TCTGAAAATGAAAACACGTCATACAAT 58.651 29.630 0.00 0.00 34.60 2.71
4145 6405 7.642194 GTCTGAAAATGAAAACACGTCATACAA 59.358 33.333 0.00 0.00 34.60 2.41
4146 6406 7.011950 AGTCTGAAAATGAAAACACGTCATACA 59.988 33.333 0.00 0.00 34.60 2.29
4147 6407 7.352739 AGTCTGAAAATGAAAACACGTCATAC 58.647 34.615 0.00 0.00 34.60 2.39
4148 6408 7.490962 AGTCTGAAAATGAAAACACGTCATA 57.509 32.000 0.00 0.00 34.60 2.15
4149 6409 6.377327 AGTCTGAAAATGAAAACACGTCAT 57.623 33.333 0.00 0.00 37.31 3.06
4150 6410 5.811399 AGTCTGAAAATGAAAACACGTCA 57.189 34.783 0.00 0.00 0.00 4.35
4151 6411 8.782533 AAATAGTCTGAAAATGAAAACACGTC 57.217 30.769 0.00 0.00 0.00 4.34
4152 6412 9.233232 GAAAATAGTCTGAAAATGAAAACACGT 57.767 29.630 0.00 0.00 0.00 4.49
4153 6413 8.690840 GGAAAATAGTCTGAAAATGAAAACACG 58.309 33.333 0.00 0.00 0.00 4.49
4154 6414 8.978539 GGGAAAATAGTCTGAAAATGAAAACAC 58.021 33.333 0.00 0.00 0.00 3.32
4155 6415 8.147704 GGGGAAAATAGTCTGAAAATGAAAACA 58.852 33.333 0.00 0.00 0.00 2.83
4156 6416 8.367911 AGGGGAAAATAGTCTGAAAATGAAAAC 58.632 33.333 0.00 0.00 0.00 2.43
4157 6417 8.491045 AGGGGAAAATAGTCTGAAAATGAAAA 57.509 30.769 0.00 0.00 0.00 2.29
4158 6418 8.491045 AAGGGGAAAATAGTCTGAAAATGAAA 57.509 30.769 0.00 0.00 0.00 2.69
4159 6419 8.367156 CAAAGGGGAAAATAGTCTGAAAATGAA 58.633 33.333 0.00 0.00 0.00 2.57
4160 6420 7.525360 GCAAAGGGGAAAATAGTCTGAAAATGA 60.525 37.037 0.00 0.00 0.00 2.57
4161 6421 6.591448 GCAAAGGGGAAAATAGTCTGAAAATG 59.409 38.462 0.00 0.00 0.00 2.32
4162 6422 6.572314 CGCAAAGGGGAAAATAGTCTGAAAAT 60.572 38.462 0.00 0.00 0.00 1.82
4163 6423 5.278758 CGCAAAGGGGAAAATAGTCTGAAAA 60.279 40.000 0.00 0.00 0.00 2.29
4164 6424 4.217550 CGCAAAGGGGAAAATAGTCTGAAA 59.782 41.667 0.00 0.00 0.00 2.69
4165 6425 3.756434 CGCAAAGGGGAAAATAGTCTGAA 59.244 43.478 0.00 0.00 0.00 3.02
4166 6426 3.244770 ACGCAAAGGGGAAAATAGTCTGA 60.245 43.478 0.00 0.00 0.00 3.27
4167 6427 3.081804 ACGCAAAGGGGAAAATAGTCTG 58.918 45.455 0.00 0.00 0.00 3.51
4168 6428 3.434940 ACGCAAAGGGGAAAATAGTCT 57.565 42.857 0.00 0.00 0.00 3.24
4169 6429 4.142534 GGTAACGCAAAGGGGAAAATAGTC 60.143 45.833 0.00 0.00 0.00 2.59
4170 6430 3.760151 GGTAACGCAAAGGGGAAAATAGT 59.240 43.478 0.00 0.00 0.00 2.12
4171 6431 4.014406 AGGTAACGCAAAGGGGAAAATAG 58.986 43.478 0.00 0.00 46.39 1.73
4172 6432 3.759618 CAGGTAACGCAAAGGGGAAAATA 59.240 43.478 0.00 0.00 46.39 1.40
4173 6433 2.560981 CAGGTAACGCAAAGGGGAAAAT 59.439 45.455 0.00 0.00 46.39 1.82
4174 6434 1.957877 CAGGTAACGCAAAGGGGAAAA 59.042 47.619 0.00 0.00 46.39 2.29
4175 6435 1.133730 ACAGGTAACGCAAAGGGGAAA 60.134 47.619 0.00 0.00 46.39 3.13
4176 6436 0.475044 ACAGGTAACGCAAAGGGGAA 59.525 50.000 0.00 0.00 46.39 3.97
4177 6437 0.475044 AACAGGTAACGCAAAGGGGA 59.525 50.000 0.00 0.00 46.39 4.81
4203 6463 2.607187 CGCACACGAATAGAAGGAAGT 58.393 47.619 0.00 0.00 43.93 3.01
4207 6467 0.647410 CAGCGCACACGAATAGAAGG 59.353 55.000 11.47 0.00 43.93 3.46
4218 6478 0.179070 TAGTTCACAACCAGCGCACA 60.179 50.000 11.47 0.00 0.00 4.57
4219 6479 1.135972 CATAGTTCACAACCAGCGCAC 60.136 52.381 11.47 0.00 0.00 5.34
4220 6480 1.155889 CATAGTTCACAACCAGCGCA 58.844 50.000 11.47 0.00 0.00 6.09
4221 6481 1.156736 ACATAGTTCACAACCAGCGC 58.843 50.000 0.00 0.00 0.00 5.92
4222 6482 2.344441 CGTACATAGTTCACAACCAGCG 59.656 50.000 0.00 0.00 0.00 5.18
4242 6515 0.319383 AGCTGAAGCAGGCGATATCG 60.319 55.000 20.79 20.79 45.16 2.92
4259 6532 6.013842 AGTCTTTTATTTAACAGCCACAGC 57.986 37.500 0.00 0.00 40.32 4.40
4279 6552 7.307694 TGAGCATATGAATCACAAACAAAGTC 58.692 34.615 6.97 0.00 0.00 3.01
4291 6564 9.608617 CACAATTAACATCTGAGCATATGAATC 57.391 33.333 6.97 4.16 0.00 2.52
4332 6605 1.276859 TGAGATCATGGGCTGCCTGT 61.277 55.000 19.68 4.48 0.00 4.00
4334 6607 1.530771 GTGAGATCATGGGCTGCCT 59.469 57.895 19.68 0.00 0.00 4.75
4335 6608 1.527844 GGTGAGATCATGGGCTGCC 60.528 63.158 11.05 11.05 0.00 4.85
4337 6610 1.890979 GCGGTGAGATCATGGGCTG 60.891 63.158 0.00 0.00 0.00 4.85
4339 6612 1.228063 ATGCGGTGAGATCATGGGC 60.228 57.895 0.00 0.00 0.00 5.36
4340 6613 1.512996 GCATGCGGTGAGATCATGGG 61.513 60.000 0.00 0.00 38.33 4.00
4349 6623 1.882625 GATAGCGTGCATGCGGTGA 60.883 57.895 24.51 12.15 42.74 4.02
4354 6628 1.568514 GCAGAGATAGCGTGCATGC 59.431 57.895 23.58 23.58 37.16 4.06
4356 6630 0.249784 CAGGCAGAGATAGCGTGCAT 60.250 55.000 10.03 0.65 40.38 3.96
4359 6633 0.678395 ATCCAGGCAGAGATAGCGTG 59.322 55.000 0.00 0.00 44.83 5.34
4360 6634 1.889829 GTATCCAGGCAGAGATAGCGT 59.110 52.381 0.00 0.00 0.00 5.07
4367 6641 1.689273 GTAGTGGGTATCCAGGCAGAG 59.311 57.143 0.00 0.00 45.05 3.35
4375 6649 4.773149 CCCTCTTGATAGTAGTGGGTATCC 59.227 50.000 0.00 0.00 40.15 2.59
4381 6655 4.586841 CCTTCTCCCTCTTGATAGTAGTGG 59.413 50.000 0.00 0.00 0.00 4.00
4382 6656 4.038642 GCCTTCTCCCTCTTGATAGTAGTG 59.961 50.000 0.00 0.00 0.00 2.74
4383 6657 4.219919 GCCTTCTCCCTCTTGATAGTAGT 58.780 47.826 0.00 0.00 0.00 2.73
4388 6662 2.119495 GTGGCCTTCTCCCTCTTGATA 58.881 52.381 3.32 0.00 0.00 2.15
4391 6665 1.208293 GTAGTGGCCTTCTCCCTCTTG 59.792 57.143 3.32 0.00 0.00 3.02
4392 6666 1.079658 AGTAGTGGCCTTCTCCCTCTT 59.920 52.381 3.32 0.00 0.00 2.85
4409 6683 2.028112 GTGGCAGAGGACAATGTCAGTA 60.028 50.000 15.86 0.00 30.25 2.74
4410 6684 1.059098 TGGCAGAGGACAATGTCAGT 58.941 50.000 15.86 1.17 33.68 3.41
4417 6691 1.451504 CAGGTGTGGCAGAGGACAA 59.548 57.895 0.00 0.00 30.25 3.18
4437 6719 2.034939 TGGTTGACAGAAGCAGCAAATG 59.965 45.455 0.00 0.00 0.00 2.32
4438 6720 2.309613 TGGTTGACAGAAGCAGCAAAT 58.690 42.857 0.00 0.00 0.00 2.32
4446 6728 3.815401 CCACTTACCTTGGTTGACAGAAG 59.185 47.826 0.00 0.00 0.00 2.85
4447 6729 3.456644 TCCACTTACCTTGGTTGACAGAA 59.543 43.478 0.00 0.00 35.42 3.02
4448 6730 3.042682 TCCACTTACCTTGGTTGACAGA 58.957 45.455 0.00 0.00 35.42 3.41
4449 6731 3.139077 GTCCACTTACCTTGGTTGACAG 58.861 50.000 0.00 0.00 35.42 3.51
4478 6760 2.544685 CACTTCCTGACTTAGCATCCG 58.455 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.