Multiple sequence alignment - TraesCS7A01G042000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G042000 chr7A 100.000 2883 0 0 1 2883 19422626 19419744 0.000000e+00 5325
1 TraesCS7A01G042000 chr7A 88.330 874 88 10 1134 2004 19387425 19386563 0.000000e+00 1037
2 TraesCS7A01G042000 chr7A 86.800 947 103 11 792 1726 19505481 19504545 0.000000e+00 1037
3 TraesCS7A01G042000 chr7A 87.148 817 89 6 923 1725 19447633 19446819 0.000000e+00 913
4 TraesCS7A01G042000 chr7A 82.292 672 67 21 1713 2358 19443354 19442709 4.230000e-148 534
5 TraesCS7A01G042000 chr7A 84.808 520 51 16 2359 2851 19373365 19372847 5.550000e-137 497
6 TraesCS7A01G042000 chr7A 84.198 424 45 16 1936 2358 19373978 19373576 2.690000e-105 392
7 TraesCS7A01G042000 chr7A 83.889 180 14 4 2488 2653 108851828 108851650 1.070000e-34 158
8 TraesCS7A01G042000 chr7D 91.696 1963 114 28 419 2358 18929983 18928047 0.000000e+00 2676
9 TraesCS7A01G042000 chr7D 84.624 1860 193 42 528 2345 18948534 18946726 0.000000e+00 1764
10 TraesCS7A01G042000 chr4A 91.250 1680 118 16 606 2283 713834928 713833276 0.000000e+00 2261
11 TraesCS7A01G042000 chr4A 90.075 534 53 0 1102 1635 713847540 713847007 0.000000e+00 693
12 TraesCS7A01G042000 chr4A 91.123 383 27 5 1632 2013 713838849 713838473 1.980000e-141 512
13 TraesCS7A01G042000 chr4A 88.889 108 9 2 52 157 379041035 379040929 2.330000e-26 130
14 TraesCS7A01G042000 chr1A 80.182 1428 223 37 545 1940 516165081 516163682 0.000000e+00 1014
15 TraesCS7A01G042000 chr1D 83.630 898 128 13 984 1864 419071067 419070172 0.000000e+00 826
16 TraesCS7A01G042000 chr2D 83.626 171 17 6 2426 2594 68787428 68787589 1.790000e-32 150
17 TraesCS7A01G042000 chr2D 95.349 86 4 0 55 140 150380653 150380738 1.390000e-28 137
18 TraesCS7A01G042000 chr5B 92.391 92 6 1 49 139 140965923 140966014 2.330000e-26 130
19 TraesCS7A01G042000 chr6B 89.216 102 11 0 52 153 48874126 48874025 8.380000e-26 128
20 TraesCS7A01G042000 chr6B 89.423 104 7 4 52 153 48981519 48981418 8.380000e-26 128
21 TraesCS7A01G042000 chr5D 90.000 100 9 1 49 147 446918165 446918264 8.380000e-26 128
22 TraesCS7A01G042000 chr6D 91.304 92 8 0 49 140 28032435 28032526 3.020000e-25 126
23 TraesCS7A01G042000 chr3A 86.207 116 14 2 54 168 57262237 57262123 1.080000e-24 124
24 TraesCS7A01G042000 chr4B 86.607 112 11 4 39 148 20800607 20800498 1.400000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G042000 chr7A 19419744 19422626 2882 True 5325.0 5325 100.0000 1 2883 1 chr7A.!!$R2 2882
1 TraesCS7A01G042000 chr7A 19386563 19387425 862 True 1037.0 1037 88.3300 1134 2004 1 chr7A.!!$R1 870
2 TraesCS7A01G042000 chr7A 19504545 19505481 936 True 1037.0 1037 86.8000 792 1726 1 chr7A.!!$R3 934
3 TraesCS7A01G042000 chr7A 19442709 19447633 4924 True 723.5 913 84.7200 923 2358 2 chr7A.!!$R6 1435
4 TraesCS7A01G042000 chr7A 19372847 19373978 1131 True 444.5 497 84.5030 1936 2851 2 chr7A.!!$R5 915
5 TraesCS7A01G042000 chr7D 18928047 18929983 1936 True 2676.0 2676 91.6960 419 2358 1 chr7D.!!$R1 1939
6 TraesCS7A01G042000 chr7D 18946726 18948534 1808 True 1764.0 1764 84.6240 528 2345 1 chr7D.!!$R2 1817
7 TraesCS7A01G042000 chr4A 713833276 713838849 5573 True 1386.5 2261 91.1865 606 2283 2 chr4A.!!$R3 1677
8 TraesCS7A01G042000 chr4A 713847007 713847540 533 True 693.0 693 90.0750 1102 1635 1 chr4A.!!$R2 533
9 TraesCS7A01G042000 chr1A 516163682 516165081 1399 True 1014.0 1014 80.1820 545 1940 1 chr1A.!!$R1 1395
10 TraesCS7A01G042000 chr1D 419070172 419071067 895 True 826.0 826 83.6300 984 1864 1 chr1D.!!$R1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 336 0.537188 CGAGCACATACTCCTTGGGT 59.463 55.0 0.0 0.0 32.79 4.51 F
598 601 0.836606 TCTCTGGAACCTTGTGTGCA 59.163 50.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 4570 0.682209 GGGCACCGTAGTAGACCTCA 60.682 60.0 0.0 0.0 40.86 3.86 R
2414 9488 0.107312 CAGGAGAACATGCTGGGGAG 60.107 60.0 0.0 0.0 43.30 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.788333 AGCATACATGTGTTGCCATTC 57.212 42.857 23.95 0.00 34.74 2.67
23 24 3.359033 AGCATACATGTGTTGCCATTCT 58.641 40.909 23.95 9.23 34.74 2.40
24 25 3.129813 AGCATACATGTGTTGCCATTCTG 59.870 43.478 23.95 0.41 34.74 3.02
26 27 4.618927 GCATACATGTGTTGCCATTCTGTT 60.619 41.667 19.47 0.00 0.00 3.16
27 28 5.472148 CATACATGTGTTGCCATTCTGTTT 58.528 37.500 9.11 0.00 0.00 2.83
28 29 4.405116 ACATGTGTTGCCATTCTGTTTT 57.595 36.364 0.00 0.00 0.00 2.43
29 30 4.121317 ACATGTGTTGCCATTCTGTTTTG 58.879 39.130 0.00 0.00 0.00 2.44
31 32 4.462508 TGTGTTGCCATTCTGTTTTGAA 57.537 36.364 0.00 0.00 0.00 2.69
33 34 4.180057 GTGTTGCCATTCTGTTTTGAACA 58.820 39.130 0.00 0.00 39.52 3.18
34 35 4.810491 GTGTTGCCATTCTGTTTTGAACAT 59.190 37.500 0.00 0.00 41.26 2.71
36 37 5.163426 TGTTGCCATTCTGTTTTGAACATCT 60.163 36.000 0.00 0.00 41.26 2.90
37 38 5.125100 TGCCATTCTGTTTTGAACATCTC 57.875 39.130 0.00 0.00 41.26 2.75
38 39 4.583907 TGCCATTCTGTTTTGAACATCTCA 59.416 37.500 0.00 0.00 41.26 3.27
60 61 8.095169 TCTCAAACTTCTTAAAGATGTACTCCC 58.905 37.037 0.00 0.00 32.26 4.30
62 63 8.437575 TCAAACTTCTTAAAGATGTACTCCCTT 58.562 33.333 0.00 0.00 32.26 3.95
63 64 8.722394 CAAACTTCTTAAAGATGTACTCCCTTC 58.278 37.037 0.00 0.00 32.26 3.46
65 66 8.152023 ACTTCTTAAAGATGTACTCCCTTCAT 57.848 34.615 0.00 0.00 36.30 2.57
66 67 9.268282 ACTTCTTAAAGATGTACTCCCTTCATA 57.732 33.333 0.00 0.00 36.30 2.15
73 74 9.981460 AAAGATGTACTCCCTTCATAAAGAAAT 57.019 29.630 0.00 0.00 35.40 2.17
76 77 9.832445 GATGTACTCCCTTCATAAAGAAATACA 57.168 33.333 0.00 0.00 35.40 2.29
79 80 9.886132 GTACTCCCTTCATAAAGAAATACAAGA 57.114 33.333 0.00 0.00 35.40 3.02
81 82 7.554476 ACTCCCTTCATAAAGAAATACAAGAGC 59.446 37.037 0.00 0.00 35.40 4.09
83 84 6.316390 CCCTTCATAAAGAAATACAAGAGCGT 59.684 38.462 0.00 0.00 35.40 5.07
84 85 7.148239 CCCTTCATAAAGAAATACAAGAGCGTT 60.148 37.037 0.00 0.00 35.40 4.84
85 86 8.237267 CCTTCATAAAGAAATACAAGAGCGTTT 58.763 33.333 0.00 0.00 35.40 3.60
88 89 9.647797 TCATAAAGAAATACAAGAGCGTTTAGA 57.352 29.630 0.00 0.00 0.00 2.10
94 95 8.467598 AGAAATACAAGAGCGTTTAGATCACTA 58.532 33.333 0.00 0.00 37.82 2.74
95 96 7.988904 AATACAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
96 97 5.646577 ACAAGAGCGTTTAGATCACTACT 57.353 39.130 0.00 0.00 37.82 2.57
98 99 6.456501 ACAAGAGCGTTTAGATCACTACTTT 58.543 36.000 0.00 0.00 37.82 2.66
99 100 7.600065 ACAAGAGCGTTTAGATCACTACTTTA 58.400 34.615 0.00 0.00 37.82 1.85
100 101 7.541437 ACAAGAGCGTTTAGATCACTACTTTAC 59.459 37.037 0.00 0.00 37.82 2.01
101 102 7.393841 AGAGCGTTTAGATCACTACTTTACT 57.606 36.000 0.00 0.00 37.82 2.24
102 103 7.251994 AGAGCGTTTAGATCACTACTTTACTG 58.748 38.462 0.00 0.00 37.82 2.74
103 104 6.331061 AGCGTTTAGATCACTACTTTACTGG 58.669 40.000 0.00 0.00 0.00 4.00
104 105 6.071503 AGCGTTTAGATCACTACTTTACTGGT 60.072 38.462 0.00 0.00 0.00 4.00
105 106 6.253083 GCGTTTAGATCACTACTTTACTGGTC 59.747 42.308 0.00 0.00 0.00 4.02
106 107 6.468319 CGTTTAGATCACTACTTTACTGGTCG 59.532 42.308 0.00 0.00 0.00 4.79
107 108 7.533426 GTTTAGATCACTACTTTACTGGTCGA 58.467 38.462 0.00 0.00 0.00 4.20
108 109 7.692460 TTAGATCACTACTTTACTGGTCGAA 57.308 36.000 0.00 0.00 0.00 3.71
109 110 6.585695 AGATCACTACTTTACTGGTCGAAA 57.414 37.500 0.00 0.00 0.00 3.46
111 112 4.539870 TCACTACTTTACTGGTCGAAACG 58.460 43.478 0.00 0.00 0.00 3.60
112 113 3.120782 CACTACTTTACTGGTCGAAACGC 59.879 47.826 0.00 0.00 0.00 4.84
114 115 2.401351 ACTTTACTGGTCGAAACGCTC 58.599 47.619 0.00 0.00 0.00 5.03
115 116 2.035576 ACTTTACTGGTCGAAACGCTCT 59.964 45.455 0.00 0.00 0.00 4.09
117 118 3.921119 TTACTGGTCGAAACGCTCTTA 57.079 42.857 0.00 0.00 0.00 2.10
119 120 5.565592 TTACTGGTCGAAACGCTCTTATA 57.434 39.130 0.00 0.00 0.00 0.98
120 121 4.650754 ACTGGTCGAAACGCTCTTATAT 57.349 40.909 0.00 0.00 0.00 0.86
121 122 5.007385 ACTGGTCGAAACGCTCTTATATT 57.993 39.130 0.00 0.00 0.00 1.28
122 123 5.416947 ACTGGTCGAAACGCTCTTATATTT 58.583 37.500 0.00 0.00 0.00 1.40
124 125 5.657474 TGGTCGAAACGCTCTTATATTTCT 58.343 37.500 0.00 0.00 0.00 2.52
125 126 6.103997 TGGTCGAAACGCTCTTATATTTCTT 58.896 36.000 0.00 0.00 0.00 2.52
127 128 7.760794 TGGTCGAAACGCTCTTATATTTCTTTA 59.239 33.333 0.00 0.00 0.00 1.85
128 129 8.054819 GGTCGAAACGCTCTTATATTTCTTTAC 58.945 37.037 0.00 0.00 0.00 2.01
129 130 8.589629 GTCGAAACGCTCTTATATTTCTTTACA 58.410 33.333 0.00 0.00 0.00 2.41
130 131 8.804743 TCGAAACGCTCTTATATTTCTTTACAG 58.195 33.333 0.00 0.00 0.00 2.74
131 132 8.804743 CGAAACGCTCTTATATTTCTTTACAGA 58.195 33.333 0.00 0.00 0.00 3.41
133 134 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
134 135 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
135 136 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
136 137 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
142 143 8.757982 ATATTTCTTTACAGAGGGAGTACGTA 57.242 34.615 0.00 0.00 0.00 3.57
143 144 6.899393 TTTCTTTACAGAGGGAGTACGTAA 57.101 37.500 0.00 0.00 0.00 3.18
144 145 7.472334 TTTCTTTACAGAGGGAGTACGTAAT 57.528 36.000 0.00 0.00 0.00 1.89
145 146 8.579850 TTTCTTTACAGAGGGAGTACGTAATA 57.420 34.615 0.00 0.00 0.00 0.98
146 147 8.579850 TTCTTTACAGAGGGAGTACGTAATAA 57.420 34.615 0.00 0.00 0.00 1.40
147 148 8.757982 TCTTTACAGAGGGAGTACGTAATAAT 57.242 34.615 0.00 0.00 0.00 1.28
148 149 9.193806 TCTTTACAGAGGGAGTACGTAATAATT 57.806 33.333 0.00 0.00 0.00 1.40
151 152 7.886629 ACAGAGGGAGTACGTAATAATTACA 57.113 36.000 0.00 0.00 35.89 2.41
152 153 8.297470 ACAGAGGGAGTACGTAATAATTACAA 57.703 34.615 0.00 0.00 35.89 2.41
154 155 8.411683 CAGAGGGAGTACGTAATAATTACAAGT 58.588 37.037 0.00 0.00 35.89 3.16
155 156 9.632638 AGAGGGAGTACGTAATAATTACAAGTA 57.367 33.333 0.00 0.00 35.89 2.24
156 157 9.890352 GAGGGAGTACGTAATAATTACAAGTAG 57.110 37.037 0.00 0.00 35.89 2.57
157 158 9.413734 AGGGAGTACGTAATAATTACAAGTAGT 57.586 33.333 0.00 0.00 35.89 2.73
158 159 9.455847 GGGAGTACGTAATAATTACAAGTAGTG 57.544 37.037 0.00 0.00 35.89 2.74
159 160 9.455847 GGAGTACGTAATAATTACAAGTAGTGG 57.544 37.037 0.00 0.00 35.89 4.00
172 173 6.294361 ACAAGTAGTGGATGTAATGTGCTA 57.706 37.500 0.00 0.00 0.00 3.49
175 176 5.300752 AGTAGTGGATGTAATGTGCTATGC 58.699 41.667 0.00 0.00 0.00 3.14
177 178 5.551305 AGTGGATGTAATGTGCTATGCTA 57.449 39.130 0.00 0.00 0.00 3.49
179 180 6.537355 AGTGGATGTAATGTGCTATGCTATT 58.463 36.000 0.00 0.00 0.00 1.73
181 182 8.156820 AGTGGATGTAATGTGCTATGCTATTAA 58.843 33.333 0.00 0.00 0.00 1.40
183 184 9.002600 TGGATGTAATGTGCTATGCTATTAAAG 57.997 33.333 0.00 0.00 0.00 1.85
184 185 9.003658 GGATGTAATGTGCTATGCTATTAAAGT 57.996 33.333 0.00 0.00 0.00 2.66
185 186 9.817365 GATGTAATGTGCTATGCTATTAAAGTG 57.183 33.333 0.00 0.00 0.00 3.16
190 191 6.639563 TGTGCTATGCTATTAAAGTGTCTGA 58.360 36.000 0.00 0.00 0.00 3.27
191 192 7.275183 TGTGCTATGCTATTAAAGTGTCTGAT 58.725 34.615 0.00 0.00 0.00 2.90
192 193 7.770433 TGTGCTATGCTATTAAAGTGTCTGATT 59.230 33.333 0.00 0.00 0.00 2.57
193 194 8.616076 GTGCTATGCTATTAAAGTGTCTGATTT 58.384 33.333 0.00 0.00 0.00 2.17
220 221 8.508800 TTTTTACGTAATAACATGCCAAACTG 57.491 30.769 9.18 0.00 0.00 3.16
221 222 4.091453 ACGTAATAACATGCCAAACTGC 57.909 40.909 0.00 0.00 0.00 4.40
222 223 3.504134 ACGTAATAACATGCCAAACTGCA 59.496 39.130 0.00 0.00 46.94 4.41
223 224 4.022762 ACGTAATAACATGCCAAACTGCAA 60.023 37.500 0.00 0.00 45.84 4.08
225 226 5.403766 CGTAATAACATGCCAAACTGCAAAA 59.596 36.000 0.00 0.00 45.84 2.44
226 227 6.090628 CGTAATAACATGCCAAACTGCAAAAT 59.909 34.615 0.00 0.00 45.84 1.82
228 229 4.816786 AACATGCCAAACTGCAAAATTC 57.183 36.364 0.00 0.00 45.84 2.17
229 230 2.801679 ACATGCCAAACTGCAAAATTCG 59.198 40.909 0.00 0.00 45.84 3.34
230 231 2.879002 TGCCAAACTGCAAAATTCGA 57.121 40.000 0.00 0.00 38.56 3.71
236 237 3.810310 AACTGCAAAATTCGACCCAAA 57.190 38.095 0.00 0.00 0.00 3.28
238 239 2.428890 ACTGCAAAATTCGACCCAAACA 59.571 40.909 0.00 0.00 0.00 2.83
239 240 3.069443 ACTGCAAAATTCGACCCAAACAT 59.931 39.130 0.00 0.00 0.00 2.71
240 241 4.279671 ACTGCAAAATTCGACCCAAACATA 59.720 37.500 0.00 0.00 0.00 2.29
241 242 4.551388 TGCAAAATTCGACCCAAACATAC 58.449 39.130 0.00 0.00 0.00 2.39
242 243 3.606346 GCAAAATTCGACCCAAACATACG 59.394 43.478 0.00 0.00 0.00 3.06
243 244 4.789784 CAAAATTCGACCCAAACATACGT 58.210 39.130 0.00 0.00 0.00 3.57
244 245 4.673534 AAATTCGACCCAAACATACGTC 57.326 40.909 0.00 0.00 0.00 4.34
249 250 3.920112 GACCCAAACATACGTCGATTC 57.080 47.619 0.00 0.00 0.00 2.52
251 252 2.264813 CCCAAACATACGTCGATTCGT 58.735 47.619 5.89 6.33 45.97 3.85
252 253 2.028763 CCCAAACATACGTCGATTCGTG 59.971 50.000 10.95 2.94 43.93 4.35
253 254 2.918600 CCAAACATACGTCGATTCGTGA 59.081 45.455 10.95 0.00 43.93 4.35
254 255 3.241552 CCAAACATACGTCGATTCGTGAC 60.242 47.826 10.95 0.00 43.93 3.67
255 256 2.905959 ACATACGTCGATTCGTGACA 57.094 45.000 10.95 0.00 43.93 3.58
256 257 3.416119 ACATACGTCGATTCGTGACAT 57.584 42.857 10.95 0.00 43.93 3.06
257 258 3.360533 ACATACGTCGATTCGTGACATC 58.639 45.455 10.95 0.00 43.93 3.06
258 259 2.463553 TACGTCGATTCGTGACATCC 57.536 50.000 10.95 0.00 43.93 3.51
260 261 0.914551 CGTCGATTCGTGACATCCAC 59.085 55.000 5.89 0.00 42.30 4.02
261 262 1.731098 CGTCGATTCGTGACATCCACA 60.731 52.381 5.89 0.00 45.98 4.17
263 264 1.816224 TCGATTCGTGACATCCACAGA 59.184 47.619 5.89 0.00 45.98 3.41
264 265 2.427095 TCGATTCGTGACATCCACAGAT 59.573 45.455 5.89 0.00 45.98 2.90
278 279 5.756195 TCCACAGATGAAAGAACAAACTG 57.244 39.130 0.00 0.00 35.84 3.16
279 280 4.036734 TCCACAGATGAAAGAACAAACTGC 59.963 41.667 0.00 0.00 34.43 4.40
280 281 4.202040 CCACAGATGAAAGAACAAACTGCA 60.202 41.667 0.00 0.00 34.43 4.41
281 282 5.508489 CCACAGATGAAAGAACAAACTGCAT 60.508 40.000 0.00 0.00 34.43 3.96
283 284 5.300034 ACAGATGAAAGAACAAACTGCATGA 59.700 36.000 0.00 0.00 34.43 3.07
284 285 6.015688 ACAGATGAAAGAACAAACTGCATGAT 60.016 34.615 0.00 0.00 34.43 2.45
286 287 7.384115 CAGATGAAAGAACAAACTGCATGATTT 59.616 33.333 0.00 0.00 0.00 2.17
288 289 7.467557 TGAAAGAACAAACTGCATGATTTTC 57.532 32.000 0.00 0.00 0.00 2.29
289 290 7.267128 TGAAAGAACAAACTGCATGATTTTCT 58.733 30.769 0.00 0.00 0.00 2.52
290 291 7.765360 TGAAAGAACAAACTGCATGATTTTCTT 59.235 29.630 0.00 6.84 0.00 2.52
291 292 9.248291 GAAAGAACAAACTGCATGATTTTCTTA 57.752 29.630 0.00 0.00 0.00 2.10
293 294 8.169977 AGAACAAACTGCATGATTTTCTTAGA 57.830 30.769 0.00 0.00 0.00 2.10
294 295 8.295288 AGAACAAACTGCATGATTTTCTTAGAG 58.705 33.333 0.00 0.00 0.00 2.43
295 296 6.385033 ACAAACTGCATGATTTTCTTAGAGC 58.615 36.000 0.00 0.00 0.00 4.09
297 298 3.624861 ACTGCATGATTTTCTTAGAGCGG 59.375 43.478 0.00 0.00 0.00 5.52
298 299 2.945008 TGCATGATTTTCTTAGAGCGGG 59.055 45.455 0.00 0.00 0.00 6.13
299 300 2.287248 GCATGATTTTCTTAGAGCGGGC 60.287 50.000 0.00 0.00 0.00 6.13
300 301 2.779755 TGATTTTCTTAGAGCGGGCA 57.220 45.000 0.00 0.00 0.00 5.36
303 304 1.821216 TTTTCTTAGAGCGGGCAAGG 58.179 50.000 0.00 0.00 0.00 3.61
306 307 1.204146 TCTTAGAGCGGGCAAGGAAT 58.796 50.000 0.00 0.00 0.00 3.01
309 310 0.618458 TAGAGCGGGCAAGGAATTGT 59.382 50.000 0.00 0.00 0.00 2.71
310 311 0.618458 AGAGCGGGCAAGGAATTGTA 59.382 50.000 0.00 0.00 0.00 2.41
311 312 1.004277 AGAGCGGGCAAGGAATTGTAA 59.996 47.619 0.00 0.00 0.00 2.41
312 313 1.132453 GAGCGGGCAAGGAATTGTAAC 59.868 52.381 0.00 0.00 0.00 2.50
314 315 1.476488 GCGGGCAAGGAATTGTAACAT 59.524 47.619 0.00 0.00 0.00 2.71
315 316 2.685897 GCGGGCAAGGAATTGTAACATA 59.314 45.455 0.00 0.00 0.00 2.29
316 317 3.488553 GCGGGCAAGGAATTGTAACATAC 60.489 47.826 0.00 0.00 0.00 2.39
317 318 3.242608 CGGGCAAGGAATTGTAACATACG 60.243 47.826 0.00 0.00 0.00 3.06
318 319 3.942748 GGGCAAGGAATTGTAACATACGA 59.057 43.478 0.00 0.00 0.00 3.43
321 322 4.094294 GCAAGGAATTGTAACATACGAGCA 59.906 41.667 0.00 0.00 0.00 4.26
322 323 5.560148 CAAGGAATTGTAACATACGAGCAC 58.440 41.667 0.00 0.00 0.00 4.40
323 324 4.827692 AGGAATTGTAACATACGAGCACA 58.172 39.130 0.00 0.00 0.00 4.57
324 325 5.428253 AGGAATTGTAACATACGAGCACAT 58.572 37.500 0.00 0.00 0.00 3.21
326 327 6.479001 AGGAATTGTAACATACGAGCACATAC 59.521 38.462 0.00 0.00 0.00 2.39
327 328 6.479001 GGAATTGTAACATACGAGCACATACT 59.521 38.462 0.00 0.00 0.00 2.12
328 329 7.306632 GGAATTGTAACATACGAGCACATACTC 60.307 40.741 0.00 0.00 0.00 2.59
329 330 4.928601 TGTAACATACGAGCACATACTCC 58.071 43.478 0.00 0.00 32.79 3.85
330 331 4.643334 TGTAACATACGAGCACATACTCCT 59.357 41.667 0.00 0.00 32.79 3.69
332 333 4.046938 ACATACGAGCACATACTCCTTG 57.953 45.455 0.00 0.00 32.79 3.61
333 334 3.181475 ACATACGAGCACATACTCCTTGG 60.181 47.826 0.00 0.00 32.79 3.61
335 336 0.537188 CGAGCACATACTCCTTGGGT 59.463 55.000 0.00 0.00 32.79 4.51
337 338 2.167693 CGAGCACATACTCCTTGGGTAA 59.832 50.000 0.00 0.00 32.79 2.85
338 339 3.369052 CGAGCACATACTCCTTGGGTAAA 60.369 47.826 0.00 0.00 32.79 2.01
339 340 4.585879 GAGCACATACTCCTTGGGTAAAA 58.414 43.478 0.00 0.00 0.00 1.52
340 341 4.993028 AGCACATACTCCTTGGGTAAAAA 58.007 39.130 0.00 0.00 0.00 1.94
361 362 5.607119 AAAATAAACTGTGTGGCTACGAG 57.393 39.130 0.00 0.00 0.00 4.18
362 363 2.074547 TAAACTGTGTGGCTACGAGC 57.925 50.000 0.00 0.00 41.46 5.03
375 376 4.524305 CGAGCTATCGGCGAGAAG 57.476 61.111 17.22 16.18 45.39 2.85
376 377 1.727723 CGAGCTATCGGCGAGAAGC 60.728 63.158 29.22 29.22 45.39 3.86
385 386 4.683432 GCGAGAAGCCACTGTTCT 57.317 55.556 0.00 0.00 40.81 3.01
387 388 2.080286 GCGAGAAGCCACTGTTCTAA 57.920 50.000 0.00 0.00 40.81 2.10
388 389 1.727335 GCGAGAAGCCACTGTTCTAAC 59.273 52.381 0.00 0.00 40.81 2.34
403 404 5.893687 TGTTCTAACAGTTTAGTCGTGTCA 58.106 37.500 0.00 0.00 36.75 3.58
404 405 6.509656 TGTTCTAACAGTTTAGTCGTGTCAT 58.490 36.000 0.00 0.00 36.75 3.06
405 406 6.639686 TGTTCTAACAGTTTAGTCGTGTCATC 59.360 38.462 0.00 0.00 36.75 2.92
406 407 5.706916 TCTAACAGTTTAGTCGTGTCATCC 58.293 41.667 0.00 0.00 36.75 3.51
408 409 3.914312 ACAGTTTAGTCGTGTCATCCAG 58.086 45.455 0.00 0.00 0.00 3.86
409 410 3.572682 ACAGTTTAGTCGTGTCATCCAGA 59.427 43.478 0.00 0.00 0.00 3.86
410 411 4.038763 ACAGTTTAGTCGTGTCATCCAGAA 59.961 41.667 0.00 0.00 0.00 3.02
415 416 4.336889 AGTCGTGTCATCCAGAAAAAGA 57.663 40.909 0.00 0.00 0.00 2.52
416 417 4.703897 AGTCGTGTCATCCAGAAAAAGAA 58.296 39.130 0.00 0.00 0.00 2.52
417 418 5.123227 AGTCGTGTCATCCAGAAAAAGAAA 58.877 37.500 0.00 0.00 0.00 2.52
434 435 9.098355 GAAAAAGAAAAACAGTTTAATCCTGCT 57.902 29.630 0.00 0.00 33.09 4.24
442 443 3.507233 CAGTTTAATCCTGCTTCTGCCAA 59.493 43.478 0.00 0.00 38.71 4.52
498 499 7.921214 TGTTGATAATTTAGTTTCGCCAACAAA 59.079 29.630 0.00 0.87 38.52 2.83
499 500 8.756864 GTTGATAATTTAGTTTCGCCAACAAAA 58.243 29.630 0.00 0.00 37.93 2.44
500 501 8.873215 TGATAATTTAGTTTCGCCAACAAAAA 57.127 26.923 0.86 1.83 37.93 1.94
502 503 9.739786 GATAATTTAGTTTCGCCAACAAAAATG 57.260 29.630 9.41 0.00 37.93 2.32
594 597 2.082231 CAGCATCTCTGGAACCTTGTG 58.918 52.381 0.00 0.00 39.15 3.33
595 598 1.701847 AGCATCTCTGGAACCTTGTGT 59.298 47.619 0.00 0.00 0.00 3.72
598 601 0.836606 TCTCTGGAACCTTGTGTGCA 59.163 50.000 0.00 0.00 0.00 4.57
625 3942 5.319139 CACTGTCATGTTTCTTAATCAGCG 58.681 41.667 0.00 0.00 0.00 5.18
746 4076 5.660460 CAAAACTAAGAAAGGCCTGTTGTT 58.340 37.500 5.69 10.41 0.00 2.83
747 4077 4.918810 AACTAAGAAAGGCCTGTTGTTG 57.081 40.909 5.69 0.00 0.00 3.33
748 4078 3.898482 ACTAAGAAAGGCCTGTTGTTGT 58.102 40.909 5.69 0.00 0.00 3.32
771 4102 3.321648 TGCCTCCGCCATGTCTGT 61.322 61.111 0.00 0.00 0.00 3.41
772 4103 2.821366 GCCTCCGCCATGTCTGTG 60.821 66.667 0.00 0.00 0.00 3.66
827 4158 3.630769 GCTTCATTCCATCATTGCTCTGA 59.369 43.478 0.00 0.00 0.00 3.27
856 4187 1.078848 CTCCGACCTCCTTGCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
1185 4536 6.494893 TGATGCATTTACAGGTGTTAGTTC 57.505 37.500 0.00 0.00 0.00 3.01
1204 4555 2.054021 TCTTCACCACCACAGATTCCA 58.946 47.619 0.00 0.00 0.00 3.53
1310 4661 3.537580 TCTCACAGTTACTTTTGGCGTT 58.462 40.909 0.00 0.00 0.00 4.84
1421 4772 2.161855 CTGGTGGCATGCTCTTTGTTA 58.838 47.619 18.92 0.00 0.00 2.41
1637 4994 1.003233 GTGAGGGTGGAGGAGTTGC 60.003 63.158 0.00 0.00 0.00 4.17
1678 5035 1.141657 AGCACTGACAAGAGAAGCCAA 59.858 47.619 0.00 0.00 0.00 4.52
1870 8705 1.556911 CCTAGCATGTTCTCCCAGTGT 59.443 52.381 0.00 0.00 0.00 3.55
1871 8706 2.625737 CTAGCATGTTCTCCCAGTGTG 58.374 52.381 0.00 0.00 0.00 3.82
1890 8727 3.506844 TGTGGTGATGGTTGATGATGTTG 59.493 43.478 0.00 0.00 0.00 3.33
1903 8740 4.098807 TGATGATGTTGATGCATTCCTTGG 59.901 41.667 0.00 0.00 0.00 3.61
1974 8811 5.164051 CGCTGTAAGAGTGTGTAAGAATGTG 60.164 44.000 0.00 0.00 34.07 3.21
1975 8812 5.696724 GCTGTAAGAGTGTGTAAGAATGTGT 59.303 40.000 0.00 0.00 34.07 3.72
1988 8825 5.362556 AAGAATGTGTTCTGAAACATCGG 57.637 39.130 14.26 0.00 46.58 4.18
2107 8944 0.251474 ATGGCAGTGTTGTGAGGCAT 60.251 50.000 0.00 0.00 41.66 4.40
2111 8948 2.493278 GGCAGTGTTGTGAGGCATTATT 59.507 45.455 0.00 0.00 0.00 1.40
2112 8949 3.694072 GGCAGTGTTGTGAGGCATTATTA 59.306 43.478 0.00 0.00 0.00 0.98
2193 9031 2.886523 TGTGCTTCAAATCCTGAACTGG 59.113 45.455 0.00 0.00 39.20 4.00
2252 9112 7.849496 TCGGTGATTTTGAATGTTTGATTTTG 58.151 30.769 0.00 0.00 0.00 2.44
2254 9114 7.042187 CGGTGATTTTGAATGTTTGATTTTGGA 60.042 33.333 0.00 0.00 0.00 3.53
2274 9134 4.283978 TGGATGTTCCATTCATGTGCTTTT 59.716 37.500 0.00 0.00 42.67 2.27
2275 9135 4.628333 GGATGTTCCATTCATGTGCTTTTG 59.372 41.667 0.00 0.00 36.28 2.44
2287 9147 4.630894 TGTGCTTTTGTTTCGAACATCT 57.369 36.364 0.00 0.00 41.79 2.90
2309 9169 9.517609 CATCTCAATCCTGATTTCTTCAAATTC 57.482 33.333 0.00 0.00 31.94 2.17
2325 9185 5.172934 TCAAATTCTGCCAAATCTGAATGC 58.827 37.500 0.00 0.00 35.65 3.56
2329 9189 2.494471 TCTGCCAAATCTGAATGCCTTG 59.506 45.455 0.00 0.00 0.00 3.61
2347 9207 2.297698 TGTCTCCAAAGAGTCCCGTA 57.702 50.000 0.00 0.00 41.26 4.02
2348 9208 1.891150 TGTCTCCAAAGAGTCCCGTAC 59.109 52.381 0.00 0.00 41.26 3.67
2365 9435 6.256321 GTCCCGTACGTTAATGAAACATACAT 59.744 38.462 15.21 0.00 36.72 2.29
2379 9449 6.590677 TGAAACATACATGAAACATGCATTGG 59.409 34.615 0.00 0.00 0.00 3.16
2440 9514 1.002888 AGCATGTTCTCCTGGTGTCTG 59.997 52.381 0.00 0.00 0.00 3.51
2441 9515 1.271054 GCATGTTCTCCTGGTGTCTGT 60.271 52.381 0.00 0.00 0.00 3.41
2444 9518 1.837439 TGTTCTCCTGGTGTCTGTGTT 59.163 47.619 0.00 0.00 0.00 3.32
2445 9519 2.238646 TGTTCTCCTGGTGTCTGTGTTT 59.761 45.455 0.00 0.00 0.00 2.83
2468 9542 3.379372 GCTGAAGGTGTTGATGCATATGT 59.621 43.478 0.00 0.00 0.00 2.29
2469 9543 4.732647 GCTGAAGGTGTTGATGCATATGTG 60.733 45.833 0.00 0.00 0.00 3.21
2477 9551 4.100529 GTTGATGCATATGTGTGCTGTTC 58.899 43.478 0.00 0.00 45.27 3.18
2479 9553 2.091852 TGCATATGTGTGCTGTTCGA 57.908 45.000 4.29 0.00 45.27 3.71
2490 9564 3.447229 TGTGCTGTTCGATTATCTGGAGA 59.553 43.478 0.00 0.00 0.00 3.71
2525 9599 7.851228 TCTGCTGTAAGAATTTTCTGAGGATA 58.149 34.615 0.00 0.00 37.65 2.59
2526 9600 8.489489 TCTGCTGTAAGAATTTTCTGAGGATAT 58.511 33.333 0.00 0.00 37.65 1.63
2529 9603 9.943163 GCTGTAAGAATTTTCTGAGGATATTTC 57.057 33.333 0.00 0.00 37.65 2.17
2550 9624 7.807977 TTTCTGAGTGTAGAAGAGCAAAAAT 57.192 32.000 0.00 0.00 37.91 1.82
2551 9625 7.807977 TTCTGAGTGTAGAAGAGCAAAAATT 57.192 32.000 0.00 0.00 33.08 1.82
2558 9632 9.502091 AGTGTAGAAGAGCAAAAATTATGTACA 57.498 29.630 0.00 0.00 0.00 2.90
2600 9674 9.871238 CACTACTAGAACTGTTAATTGGTACAT 57.129 33.333 0.00 0.00 39.30 2.29
2632 9706 7.856145 ATTTACTTTGGAAGATGACTGCTAG 57.144 36.000 0.00 0.00 0.00 3.42
2635 9709 5.241662 ACTTTGGAAGATGACTGCTAGTTC 58.758 41.667 0.00 0.00 0.00 3.01
2639 9713 6.214191 TGGAAGATGACTGCTAGTTCTAAG 57.786 41.667 0.00 0.00 0.00 2.18
2643 9717 6.449635 AGATGACTGCTAGTTCTAAGTGAG 57.550 41.667 0.00 0.00 0.00 3.51
2651 9725 6.467677 TGCTAGTTCTAAGTGAGCTGATTTT 58.532 36.000 0.00 0.00 36.87 1.82
2654 9728 8.599774 GCTAGTTCTAAGTGAGCTGATTTTTAG 58.400 37.037 0.00 0.00 36.87 1.85
2659 9733 9.772973 TTCTAAGTGAGCTGATTTTTAGTGTTA 57.227 29.630 0.00 0.00 0.00 2.41
2661 9735 9.813080 CTAAGTGAGCTGATTTTTAGTGTTAAC 57.187 33.333 0.00 0.00 0.00 2.01
2666 9740 9.515020 TGAGCTGATTTTTAGTGTTAACTTTTG 57.485 29.630 7.22 0.00 37.88 2.44
2668 9742 8.474831 AGCTGATTTTTAGTGTTAACTTTTGGT 58.525 29.630 7.22 0.00 37.88 3.67
2669 9743 8.539674 GCTGATTTTTAGTGTTAACTTTTGGTG 58.460 33.333 7.22 0.00 37.88 4.17
2670 9744 9.581099 CTGATTTTTAGTGTTAACTTTTGGTGT 57.419 29.630 7.22 0.00 37.88 4.16
2671 9745 9.575783 TGATTTTTAGTGTTAACTTTTGGTGTC 57.424 29.630 7.22 0.00 37.88 3.67
2672 9746 9.575783 GATTTTTAGTGTTAACTTTTGGTGTCA 57.424 29.630 7.22 0.00 37.88 3.58
2674 9748 7.925043 TTTAGTGTTAACTTTTGGTGTCAGA 57.075 32.000 7.22 0.00 37.88 3.27
2677 9751 5.944007 AGTGTTAACTTTTGGTGTCAGAAGT 59.056 36.000 7.22 0.00 46.24 3.01
2690 9768 5.402398 GTGTCAGAAGTTATGATTTTGGGC 58.598 41.667 3.07 0.00 0.00 5.36
2712 9790 4.321899 GCCTAGCATTTGGTTTGAATGTGA 60.322 41.667 0.00 0.00 36.96 3.58
2719 9797 3.023946 TGGTTTGAATGTGAATTGCCG 57.976 42.857 0.00 0.00 0.00 5.69
2744 9822 7.095017 CGCCTCTATCCCAATTCTAATTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
2746 9824 7.389053 CCTCTATCCCAATTCTAATTTCTTCGG 59.611 40.741 0.00 0.00 0.00 4.30
2778 9868 5.238868 GCCCTTCTATTTTTAGAATCGTCCC 59.761 44.000 0.00 0.00 35.73 4.46
2792 9882 2.972625 TCGTCCCACTGTTCATCAATC 58.027 47.619 0.00 0.00 0.00 2.67
2810 9906 2.447408 TCCCGGTGCTGAGACTATAA 57.553 50.000 0.00 0.00 0.00 0.98
2820 9916 3.493524 GCTGAGACTATAAGCCAGGTTCC 60.494 52.174 0.00 0.00 0.00 3.62
2851 9948 5.064071 GCTAGCCTTTACTGAAAGCTAACAG 59.936 44.000 2.29 15.49 40.76 3.16
2852 9949 3.753797 AGCCTTTACTGAAAGCTAACAGC 59.246 43.478 16.57 6.01 40.76 4.40
2853 9950 3.502211 GCCTTTACTGAAAGCTAACAGCA 59.498 43.478 16.57 4.84 45.56 4.41
2854 9951 4.156739 GCCTTTACTGAAAGCTAACAGCAT 59.843 41.667 16.57 4.81 45.56 3.79
2855 9952 5.634896 CCTTTACTGAAAGCTAACAGCATG 58.365 41.667 16.57 0.00 45.56 4.06
2856 9953 5.412594 CCTTTACTGAAAGCTAACAGCATGA 59.587 40.000 16.57 4.04 45.56 3.07
2857 9954 5.862924 TTACTGAAAGCTAACAGCATGAC 57.137 39.130 16.57 0.00 45.56 3.06
2858 9955 4.013267 ACTGAAAGCTAACAGCATGACT 57.987 40.909 16.57 0.00 45.56 3.41
2859 9956 3.999663 ACTGAAAGCTAACAGCATGACTC 59.000 43.478 16.57 0.00 45.56 3.36
2860 9957 4.252073 CTGAAAGCTAACAGCATGACTCT 58.748 43.478 0.00 0.00 45.56 3.24
2861 9958 5.047021 ACTGAAAGCTAACAGCATGACTCTA 60.047 40.000 16.57 0.00 45.56 2.43
2862 9959 5.982356 TGAAAGCTAACAGCATGACTCTAT 58.018 37.500 0.00 0.00 45.56 1.98
2863 9960 6.045318 TGAAAGCTAACAGCATGACTCTATC 58.955 40.000 0.00 0.00 45.56 2.08
2864 9961 5.604758 AAGCTAACAGCATGACTCTATCA 57.395 39.130 0.00 0.00 45.56 2.15
2866 9963 5.782047 AGCTAACAGCATGACTCTATCATC 58.218 41.667 0.00 0.00 46.96 2.92
2867 9964 5.539574 AGCTAACAGCATGACTCTATCATCT 59.460 40.000 0.00 0.00 46.96 2.90
2868 9965 6.041865 AGCTAACAGCATGACTCTATCATCTT 59.958 38.462 0.00 0.00 46.96 2.40
2869 9966 6.145858 GCTAACAGCATGACTCTATCATCTTG 59.854 42.308 0.00 0.00 45.52 3.02
2870 9967 5.611128 ACAGCATGACTCTATCATCTTGT 57.389 39.130 0.00 0.00 45.52 3.16
2871 9968 5.987098 ACAGCATGACTCTATCATCTTGTT 58.013 37.500 0.00 0.00 45.52 2.83
2872 9969 6.413052 ACAGCATGACTCTATCATCTTGTTT 58.587 36.000 0.00 0.00 45.52 2.83
2873 9970 6.538021 ACAGCATGACTCTATCATCTTGTTTC 59.462 38.462 0.00 0.00 45.52 2.78
2874 9971 6.762187 CAGCATGACTCTATCATCTTGTTTCT 59.238 38.462 0.00 0.00 45.52 2.52
2875 9972 7.280428 CAGCATGACTCTATCATCTTGTTTCTT 59.720 37.037 0.00 0.00 45.52 2.52
2876 9973 7.280428 AGCATGACTCTATCATCTTGTTTCTTG 59.720 37.037 0.00 0.00 45.52 3.02
2877 9974 7.279536 GCATGACTCTATCATCTTGTTTCTTGA 59.720 37.037 0.00 0.00 45.52 3.02
2878 9975 9.327628 CATGACTCTATCATCTTGTTTCTTGAT 57.672 33.333 0.00 0.00 45.52 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.612560 TGTTCAAAACAGAATGGCAACACATG 61.613 38.462 0.00 0.00 43.77 3.21
10 11 4.322273 TGTTCAAAACAGAATGGCAACACA 60.322 37.500 0.00 0.00 43.77 3.72
11 12 4.180057 TGTTCAAAACAGAATGGCAACAC 58.820 39.130 0.00 0.00 43.77 3.32
14 15 5.068855 TGAGATGTTCAAAACAGAATGGCAA 59.931 36.000 0.00 0.00 45.95 4.52
15 16 4.583907 TGAGATGTTCAAAACAGAATGGCA 59.416 37.500 0.00 0.00 45.95 4.92
16 17 5.125100 TGAGATGTTCAAAACAGAATGGC 57.875 39.130 0.00 0.00 45.95 4.40
28 29 9.342308 ACATCTTTAAGAAGTTTGAGATGTTCA 57.658 29.630 10.14 0.00 46.79 3.18
33 34 9.660180 GGAGTACATCTTTAAGAAGTTTGAGAT 57.340 33.333 8.14 0.00 34.41 2.75
34 35 8.095169 GGGAGTACATCTTTAAGAAGTTTGAGA 58.905 37.037 8.14 0.00 34.41 3.27
36 37 7.974504 AGGGAGTACATCTTTAAGAAGTTTGA 58.025 34.615 8.14 0.00 34.41 2.69
37 38 8.622948 AAGGGAGTACATCTTTAAGAAGTTTG 57.377 34.615 8.14 0.25 34.41 2.93
38 39 8.437575 TGAAGGGAGTACATCTTTAAGAAGTTT 58.562 33.333 8.14 0.00 34.41 2.66
40 41 7.554959 TGAAGGGAGTACATCTTTAAGAAGT 57.445 36.000 7.95 7.95 34.41 3.01
47 48 9.981460 ATTTCTTTATGAAGGGAGTACATCTTT 57.019 29.630 0.00 0.00 35.89 2.52
50 51 9.832445 TGTATTTCTTTATGAAGGGAGTACATC 57.168 33.333 0.00 0.00 35.89 3.06
53 54 9.886132 TCTTGTATTTCTTTATGAAGGGAGTAC 57.114 33.333 0.00 0.00 35.89 2.73
55 56 7.554476 GCTCTTGTATTTCTTTATGAAGGGAGT 59.446 37.037 0.00 0.00 35.89 3.85
56 57 7.254590 CGCTCTTGTATTTCTTTATGAAGGGAG 60.255 40.741 0.00 0.00 35.89 4.30
58 59 6.316390 ACGCTCTTGTATTTCTTTATGAAGGG 59.684 38.462 0.00 0.00 35.89 3.95
62 63 9.647797 TCTAAACGCTCTTGTATTTCTTTATGA 57.352 29.630 0.00 0.00 0.00 2.15
65 66 9.647797 TGATCTAAACGCTCTTGTATTTCTTTA 57.352 29.630 0.00 0.00 0.00 1.85
66 67 8.443937 GTGATCTAAACGCTCTTGTATTTCTTT 58.556 33.333 0.00 0.00 0.00 2.52
67 68 7.819900 AGTGATCTAAACGCTCTTGTATTTCTT 59.180 33.333 0.00 0.00 0.00 2.52
73 74 6.754702 AGTAGTGATCTAAACGCTCTTGTA 57.245 37.500 0.00 0.00 0.00 2.41
74 75 5.646577 AGTAGTGATCTAAACGCTCTTGT 57.353 39.130 0.00 0.00 0.00 3.16
75 76 6.952935 AAAGTAGTGATCTAAACGCTCTTG 57.047 37.500 0.00 0.00 0.00 3.02
76 77 7.755822 CAGTAAAGTAGTGATCTAAACGCTCTT 59.244 37.037 0.00 0.00 0.00 2.85
77 78 7.251994 CAGTAAAGTAGTGATCTAAACGCTCT 58.748 38.462 0.00 0.00 0.00 4.09
79 80 6.071503 ACCAGTAAAGTAGTGATCTAAACGCT 60.072 38.462 0.00 0.00 0.00 5.07
80 81 6.098017 ACCAGTAAAGTAGTGATCTAAACGC 58.902 40.000 0.00 0.00 0.00 4.84
81 82 6.468319 CGACCAGTAAAGTAGTGATCTAAACG 59.532 42.308 0.00 0.00 0.00 3.60
83 84 7.692460 TCGACCAGTAAAGTAGTGATCTAAA 57.308 36.000 0.00 0.00 0.00 1.85
84 85 7.692460 TTCGACCAGTAAAGTAGTGATCTAA 57.308 36.000 0.00 0.00 0.00 2.10
85 86 7.533426 GTTTCGACCAGTAAAGTAGTGATCTA 58.467 38.462 0.00 0.00 0.00 1.98
86 87 6.388278 GTTTCGACCAGTAAAGTAGTGATCT 58.612 40.000 0.00 0.00 0.00 2.75
87 88 5.285607 CGTTTCGACCAGTAAAGTAGTGATC 59.714 44.000 0.00 0.00 0.00 2.92
88 89 5.159209 CGTTTCGACCAGTAAAGTAGTGAT 58.841 41.667 0.00 0.00 0.00 3.06
89 90 4.539870 CGTTTCGACCAGTAAAGTAGTGA 58.460 43.478 0.00 0.00 0.00 3.41
90 91 3.120782 GCGTTTCGACCAGTAAAGTAGTG 59.879 47.826 0.00 0.00 0.00 2.74
94 95 2.035576 AGAGCGTTTCGACCAGTAAAGT 59.964 45.455 0.00 0.00 0.00 2.66
95 96 2.673833 AGAGCGTTTCGACCAGTAAAG 58.326 47.619 0.00 0.00 0.00 1.85
96 97 2.806608 AGAGCGTTTCGACCAGTAAA 57.193 45.000 0.00 0.00 0.00 2.01
98 99 5.762825 ATATAAGAGCGTTTCGACCAGTA 57.237 39.130 0.00 0.00 0.00 2.74
99 100 4.650754 ATATAAGAGCGTTTCGACCAGT 57.349 40.909 0.00 0.00 0.00 4.00
100 101 5.749109 AGAAATATAAGAGCGTTTCGACCAG 59.251 40.000 0.00 0.00 36.10 4.00
101 102 5.657474 AGAAATATAAGAGCGTTTCGACCA 58.343 37.500 0.00 0.00 36.10 4.02
102 103 6.585389 AAGAAATATAAGAGCGTTTCGACC 57.415 37.500 0.00 0.00 36.10 4.79
103 104 8.589629 TGTAAAGAAATATAAGAGCGTTTCGAC 58.410 33.333 0.00 0.00 36.10 4.20
104 105 8.692110 TGTAAAGAAATATAAGAGCGTTTCGA 57.308 30.769 0.00 0.00 36.10 3.71
105 106 8.804743 TCTGTAAAGAAATATAAGAGCGTTTCG 58.195 33.333 0.00 0.00 36.10 3.46
107 108 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
108 109 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
109 110 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
111 112 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
114 115 9.680315 CGTACTCCCTCTGTAAAGAAATATAAG 57.320 37.037 0.00 0.00 0.00 1.73
115 116 9.193806 ACGTACTCCCTCTGTAAAGAAATATAA 57.806 33.333 0.00 0.00 0.00 0.98
117 118 7.657023 ACGTACTCCCTCTGTAAAGAAATAT 57.343 36.000 0.00 0.00 0.00 1.28
119 120 5.997384 ACGTACTCCCTCTGTAAAGAAAT 57.003 39.130 0.00 0.00 0.00 2.17
120 121 6.899393 TTACGTACTCCCTCTGTAAAGAAA 57.101 37.500 0.00 0.00 0.00 2.52
121 122 8.579850 TTATTACGTACTCCCTCTGTAAAGAA 57.420 34.615 0.00 0.00 0.00 2.52
122 123 8.757982 ATTATTACGTACTCCCTCTGTAAAGA 57.242 34.615 0.00 0.00 0.00 2.52
125 126 9.407380 TGTAATTATTACGTACTCCCTCTGTAA 57.593 33.333 10.09 0.00 38.98 2.41
127 128 7.886629 TGTAATTATTACGTACTCCCTCTGT 57.113 36.000 10.09 0.00 38.98 3.41
128 129 8.411683 ACTTGTAATTATTACGTACTCCCTCTG 58.588 37.037 10.09 0.00 38.98 3.35
129 130 8.530804 ACTTGTAATTATTACGTACTCCCTCT 57.469 34.615 10.09 0.00 38.98 3.69
130 131 9.890352 CTACTTGTAATTATTACGTACTCCCTC 57.110 37.037 10.09 0.00 38.98 4.30
131 132 9.413734 ACTACTTGTAATTATTACGTACTCCCT 57.586 33.333 10.09 0.00 38.98 4.20
133 134 9.455847 CCACTACTTGTAATTATTACGTACTCC 57.544 37.037 10.09 0.00 38.98 3.85
144 145 9.104965 GCACATTACATCCACTACTTGTAATTA 57.895 33.333 5.13 0.00 41.97 1.40
145 146 7.829211 AGCACATTACATCCACTACTTGTAATT 59.171 33.333 5.13 0.00 41.97 1.40
146 147 7.338710 AGCACATTACATCCACTACTTGTAAT 58.661 34.615 0.00 0.00 43.68 1.89
147 148 6.707290 AGCACATTACATCCACTACTTGTAA 58.293 36.000 0.00 0.00 39.41 2.41
148 149 6.294361 AGCACATTACATCCACTACTTGTA 57.706 37.500 0.00 0.00 0.00 2.41
149 150 5.165961 AGCACATTACATCCACTACTTGT 57.834 39.130 0.00 0.00 0.00 3.16
151 152 5.760253 GCATAGCACATTACATCCACTACTT 59.240 40.000 0.00 0.00 0.00 2.24
152 153 5.070981 AGCATAGCACATTACATCCACTACT 59.929 40.000 0.00 0.00 0.00 2.57
154 155 5.551305 AGCATAGCACATTACATCCACTA 57.449 39.130 0.00 0.00 0.00 2.74
155 156 4.428294 AGCATAGCACATTACATCCACT 57.572 40.909 0.00 0.00 0.00 4.00
156 157 6.808008 AATAGCATAGCACATTACATCCAC 57.192 37.500 0.00 0.00 0.00 4.02
157 158 8.916628 TTTAATAGCATAGCACATTACATCCA 57.083 30.769 0.00 0.00 0.00 3.41
158 159 9.003658 ACTTTAATAGCATAGCACATTACATCC 57.996 33.333 0.00 0.00 0.00 3.51
159 160 9.817365 CACTTTAATAGCATAGCACATTACATC 57.183 33.333 0.00 0.00 0.00 3.06
160 161 9.342308 ACACTTTAATAGCATAGCACATTACAT 57.658 29.630 0.00 0.00 0.00 2.29
161 162 8.731275 ACACTTTAATAGCATAGCACATTACA 57.269 30.769 0.00 0.00 0.00 2.41
162 163 9.046296 AGACACTTTAATAGCATAGCACATTAC 57.954 33.333 0.00 0.00 0.00 1.89
163 164 9.045223 CAGACACTTTAATAGCATAGCACATTA 57.955 33.333 0.00 0.00 0.00 1.90
166 167 6.639563 TCAGACACTTTAATAGCATAGCACA 58.360 36.000 0.00 0.00 0.00 4.57
167 168 7.721286 ATCAGACACTTTAATAGCATAGCAC 57.279 36.000 0.00 0.00 0.00 4.40
168 169 8.737168 AAATCAGACACTTTAATAGCATAGCA 57.263 30.769 0.00 0.00 0.00 3.49
197 198 6.087522 GCAGTTTGGCATGTTATTACGTAAA 58.912 36.000 12.81 0.00 0.00 2.01
198 199 5.181433 TGCAGTTTGGCATGTTATTACGTAA 59.819 36.000 11.02 11.02 39.25 3.18
200 201 3.504134 TGCAGTTTGGCATGTTATTACGT 59.496 39.130 0.00 0.00 39.25 3.57
202 203 6.777526 TTTTGCAGTTTGGCATGTTATTAC 57.222 33.333 0.00 0.00 44.48 1.89
203 204 7.148672 CGAATTTTGCAGTTTGGCATGTTATTA 60.149 33.333 0.00 0.00 44.48 0.98
204 205 6.347563 CGAATTTTGCAGTTTGGCATGTTATT 60.348 34.615 0.00 0.00 44.48 1.40
205 206 5.120519 CGAATTTTGCAGTTTGGCATGTTAT 59.879 36.000 0.00 0.00 44.48 1.89
208 209 2.801679 CGAATTTTGCAGTTTGGCATGT 59.198 40.909 0.00 0.00 44.48 3.21
209 210 3.058450 TCGAATTTTGCAGTTTGGCATG 58.942 40.909 0.00 0.00 44.48 4.06
210 211 3.059166 GTCGAATTTTGCAGTTTGGCAT 58.941 40.909 0.00 0.00 44.48 4.40
211 212 2.468831 GTCGAATTTTGCAGTTTGGCA 58.531 42.857 0.00 0.00 43.19 4.92
213 214 2.223923 TGGGTCGAATTTTGCAGTTTGG 60.224 45.455 0.00 0.00 0.00 3.28
214 215 3.090952 TGGGTCGAATTTTGCAGTTTG 57.909 42.857 0.00 0.00 0.00 2.93
215 216 3.810310 TTGGGTCGAATTTTGCAGTTT 57.190 38.095 0.00 0.00 0.00 2.66
216 217 3.118956 TGTTTGGGTCGAATTTTGCAGTT 60.119 39.130 0.00 0.00 0.00 3.16
217 218 2.428890 TGTTTGGGTCGAATTTTGCAGT 59.571 40.909 0.00 0.00 0.00 4.40
219 220 3.742433 ATGTTTGGGTCGAATTTTGCA 57.258 38.095 0.00 0.00 0.00 4.08
220 221 3.606346 CGTATGTTTGGGTCGAATTTTGC 59.394 43.478 0.00 0.00 0.00 3.68
221 222 4.789784 ACGTATGTTTGGGTCGAATTTTG 58.210 39.130 0.00 0.00 0.00 2.44
222 223 5.038247 GACGTATGTTTGGGTCGAATTTT 57.962 39.130 0.00 0.00 0.00 1.82
223 224 4.673534 GACGTATGTTTGGGTCGAATTT 57.326 40.909 0.00 0.00 0.00 1.82
229 230 2.280708 CGAATCGACGTATGTTTGGGTC 59.719 50.000 0.00 0.00 0.00 4.46
230 231 2.264813 CGAATCGACGTATGTTTGGGT 58.735 47.619 0.00 0.00 0.00 4.51
236 237 2.905959 TGTCACGAATCGACGTATGT 57.094 45.000 10.55 0.00 44.76 2.29
238 239 2.356695 TGGATGTCACGAATCGACGTAT 59.643 45.455 10.55 0.00 44.76 3.06
239 240 1.738908 TGGATGTCACGAATCGACGTA 59.261 47.619 10.55 0.00 44.76 3.57
241 242 0.914551 GTGGATGTCACGAATCGACG 59.085 55.000 10.55 0.00 36.56 5.12
251 252 4.971939 TGTTCTTTCATCTGTGGATGTCA 58.028 39.130 5.99 0.00 46.74 3.58
252 253 5.947228 TTGTTCTTTCATCTGTGGATGTC 57.053 39.130 5.99 0.00 46.74 3.06
253 254 5.829924 AGTTTGTTCTTTCATCTGTGGATGT 59.170 36.000 5.99 0.00 46.74 3.06
255 256 5.278660 GCAGTTTGTTCTTTCATCTGTGGAT 60.279 40.000 0.00 0.00 0.00 3.41
256 257 4.036734 GCAGTTTGTTCTTTCATCTGTGGA 59.963 41.667 0.00 0.00 0.00 4.02
257 258 4.202040 TGCAGTTTGTTCTTTCATCTGTGG 60.202 41.667 0.00 0.00 0.00 4.17
258 259 4.923893 TGCAGTTTGTTCTTTCATCTGTG 58.076 39.130 0.00 0.00 0.00 3.66
260 261 5.765176 TCATGCAGTTTGTTCTTTCATCTG 58.235 37.500 0.00 0.00 0.00 2.90
261 262 6.585695 ATCATGCAGTTTGTTCTTTCATCT 57.414 33.333 0.00 0.00 0.00 2.90
263 264 7.929785 AGAAAATCATGCAGTTTGTTCTTTCAT 59.070 29.630 0.00 0.00 0.00 2.57
264 265 7.267128 AGAAAATCATGCAGTTTGTTCTTTCA 58.733 30.769 0.00 0.00 0.00 2.69
265 266 7.704789 AGAAAATCATGCAGTTTGTTCTTTC 57.295 32.000 0.00 0.00 0.00 2.62
266 267 9.252962 CTAAGAAAATCATGCAGTTTGTTCTTT 57.747 29.630 17.42 3.70 29.31 2.52
267 268 8.632679 TCTAAGAAAATCATGCAGTTTGTTCTT 58.367 29.630 16.77 16.77 29.31 2.52
268 269 8.169977 TCTAAGAAAATCATGCAGTTTGTTCT 57.830 30.769 0.00 0.00 29.31 3.01
269 270 7.061557 GCTCTAAGAAAATCATGCAGTTTGTTC 59.938 37.037 0.00 0.00 29.31 3.18
270 271 6.865205 GCTCTAAGAAAATCATGCAGTTTGTT 59.135 34.615 0.00 0.00 31.23 2.83
271 272 6.385033 GCTCTAAGAAAATCATGCAGTTTGT 58.615 36.000 0.00 0.00 0.00 2.83
272 273 5.510674 CGCTCTAAGAAAATCATGCAGTTTG 59.489 40.000 0.00 0.00 0.00 2.93
273 274 5.392380 CCGCTCTAAGAAAATCATGCAGTTT 60.392 40.000 0.00 0.00 0.00 2.66
274 275 4.095483 CCGCTCTAAGAAAATCATGCAGTT 59.905 41.667 0.00 0.00 0.00 3.16
276 277 3.003068 CCCGCTCTAAGAAAATCATGCAG 59.997 47.826 0.00 0.00 0.00 4.41
277 278 2.945008 CCCGCTCTAAGAAAATCATGCA 59.055 45.455 0.00 0.00 0.00 3.96
278 279 2.287248 GCCCGCTCTAAGAAAATCATGC 60.287 50.000 0.00 0.00 0.00 4.06
279 280 2.945008 TGCCCGCTCTAAGAAAATCATG 59.055 45.455 0.00 0.00 0.00 3.07
280 281 3.281727 TGCCCGCTCTAAGAAAATCAT 57.718 42.857 0.00 0.00 0.00 2.45
281 282 2.779755 TGCCCGCTCTAAGAAAATCA 57.220 45.000 0.00 0.00 0.00 2.57
283 284 2.026262 TCCTTGCCCGCTCTAAGAAAAT 60.026 45.455 0.00 0.00 0.00 1.82
284 285 1.349688 TCCTTGCCCGCTCTAAGAAAA 59.650 47.619 0.00 0.00 0.00 2.29
286 287 0.981183 TTCCTTGCCCGCTCTAAGAA 59.019 50.000 0.00 0.00 0.00 2.52
288 289 1.672881 CAATTCCTTGCCCGCTCTAAG 59.327 52.381 0.00 0.00 0.00 2.18
289 290 1.004277 ACAATTCCTTGCCCGCTCTAA 59.996 47.619 0.00 0.00 35.69 2.10
290 291 0.618458 ACAATTCCTTGCCCGCTCTA 59.382 50.000 0.00 0.00 35.69 2.43
291 292 0.618458 TACAATTCCTTGCCCGCTCT 59.382 50.000 0.00 0.00 35.69 4.09
293 294 1.173913 GTTACAATTCCTTGCCCGCT 58.826 50.000 0.00 0.00 35.69 5.52
294 295 0.885196 TGTTACAATTCCTTGCCCGC 59.115 50.000 0.00 0.00 35.69 6.13
295 296 3.242608 CGTATGTTACAATTCCTTGCCCG 60.243 47.826 0.00 0.00 35.69 6.13
297 298 4.495844 GCTCGTATGTTACAATTCCTTGCC 60.496 45.833 0.00 0.00 35.69 4.52
298 299 4.094294 TGCTCGTATGTTACAATTCCTTGC 59.906 41.667 0.00 0.00 35.69 4.01
299 300 5.121611 TGTGCTCGTATGTTACAATTCCTTG 59.878 40.000 0.00 0.00 38.39 3.61
300 301 5.242434 TGTGCTCGTATGTTACAATTCCTT 58.758 37.500 0.00 0.00 0.00 3.36
303 304 7.306632 GGAGTATGTGCTCGTATGTTACAATTC 60.307 40.741 0.00 0.00 36.41 2.17
306 307 5.126545 AGGAGTATGTGCTCGTATGTTACAA 59.873 40.000 0.00 0.00 36.41 2.41
309 310 5.451381 CCAAGGAGTATGTGCTCGTATGTTA 60.451 44.000 0.00 0.00 36.41 2.41
310 311 4.433615 CAAGGAGTATGTGCTCGTATGTT 58.566 43.478 0.00 0.00 36.41 2.71
311 312 3.181475 CCAAGGAGTATGTGCTCGTATGT 60.181 47.826 0.00 0.00 36.41 2.29
312 313 3.384668 CCAAGGAGTATGTGCTCGTATG 58.615 50.000 0.00 0.00 36.41 2.39
314 315 1.754803 CCCAAGGAGTATGTGCTCGTA 59.245 52.381 0.00 0.00 36.41 3.43
315 316 0.537188 CCCAAGGAGTATGTGCTCGT 59.463 55.000 0.00 0.00 36.41 4.18
316 317 0.537188 ACCCAAGGAGTATGTGCTCG 59.463 55.000 0.00 0.00 36.41 5.03
317 318 3.906720 TTACCCAAGGAGTATGTGCTC 57.093 47.619 0.00 0.00 34.89 4.26
318 319 4.650972 TTTTACCCAAGGAGTATGTGCT 57.349 40.909 0.00 0.00 0.00 4.40
338 339 5.562113 GCTCGTAGCCACACAGTTTATTTTT 60.562 40.000 0.00 0.00 34.48 1.94
339 340 4.083484 GCTCGTAGCCACACAGTTTATTTT 60.083 41.667 0.00 0.00 34.48 1.82
340 341 3.435671 GCTCGTAGCCACACAGTTTATTT 59.564 43.478 0.00 0.00 34.48 1.40
341 342 3.000727 GCTCGTAGCCACACAGTTTATT 58.999 45.455 0.00 0.00 34.48 1.40
342 343 2.233922 AGCTCGTAGCCACACAGTTTAT 59.766 45.455 3.66 0.00 43.77 1.40
343 344 1.616865 AGCTCGTAGCCACACAGTTTA 59.383 47.619 3.66 0.00 43.77 2.01
348 349 0.380733 CGATAGCTCGTAGCCACACA 59.619 55.000 0.00 0.00 43.77 3.72
349 350 0.317938 CCGATAGCTCGTAGCCACAC 60.318 60.000 0.00 0.00 43.77 3.82
352 353 2.904676 CGCCGATAGCTCGTAGCCA 61.905 63.158 0.00 0.00 43.77 4.75
353 354 2.126812 CGCCGATAGCTCGTAGCC 60.127 66.667 0.00 0.00 43.77 3.93
354 355 1.154376 CTCGCCGATAGCTCGTAGC 60.154 63.158 0.00 0.00 43.49 3.58
355 356 0.866427 TTCTCGCCGATAGCTCGTAG 59.134 55.000 0.00 0.00 43.49 3.51
356 357 0.866427 CTTCTCGCCGATAGCTCGTA 59.134 55.000 0.00 0.00 43.49 3.43
358 359 1.727723 GCTTCTCGCCGATAGCTCG 60.728 63.158 12.43 0.00 44.62 5.03
359 360 4.236724 GCTTCTCGCCGATAGCTC 57.763 61.111 12.43 0.00 40.39 4.09
367 368 5.963892 TGTTAGAACAGTGGCTTCTCGCC 62.964 52.174 0.00 0.00 45.67 5.54
368 369 1.727335 GTTAGAACAGTGGCTTCTCGC 59.273 52.381 0.00 0.00 38.13 5.03
369 370 3.026630 TGTTAGAACAGTGGCTTCTCG 57.973 47.619 0.00 0.00 34.30 4.04
380 381 5.893687 TGACACGACTAAACTGTTAGAACA 58.106 37.500 0.00 0.00 39.36 3.18
381 382 6.089150 GGATGACACGACTAAACTGTTAGAAC 59.911 42.308 0.00 0.00 39.36 3.01
382 383 6.154445 GGATGACACGACTAAACTGTTAGAA 58.846 40.000 0.00 0.00 39.36 2.10
383 384 5.242171 TGGATGACACGACTAAACTGTTAGA 59.758 40.000 0.00 0.00 39.36 2.10
384 385 5.466819 TGGATGACACGACTAAACTGTTAG 58.533 41.667 0.00 0.00 42.23 2.34
385 386 5.242171 TCTGGATGACACGACTAAACTGTTA 59.758 40.000 0.00 0.00 0.00 2.41
387 388 3.572682 TCTGGATGACACGACTAAACTGT 59.427 43.478 0.00 0.00 0.00 3.55
388 389 4.174411 TCTGGATGACACGACTAAACTG 57.826 45.455 0.00 0.00 0.00 3.16
390 391 5.917541 TTTTCTGGATGACACGACTAAAC 57.082 39.130 0.00 0.00 0.00 2.01
391 392 6.285224 TCTTTTTCTGGATGACACGACTAAA 58.715 36.000 0.00 0.00 0.00 1.85
392 393 5.849510 TCTTTTTCTGGATGACACGACTAA 58.150 37.500 0.00 0.00 0.00 2.24
393 394 5.462530 TCTTTTTCTGGATGACACGACTA 57.537 39.130 0.00 0.00 0.00 2.59
394 395 4.336889 TCTTTTTCTGGATGACACGACT 57.663 40.909 0.00 0.00 0.00 4.18
397 398 6.033341 TGTTTTTCTTTTTCTGGATGACACG 58.967 36.000 0.00 0.00 0.00 4.49
398 399 7.035612 ACTGTTTTTCTTTTTCTGGATGACAC 58.964 34.615 0.00 0.00 0.00 3.67
404 405 9.594478 GGATTAAACTGTTTTTCTTTTTCTGGA 57.406 29.630 11.48 0.00 0.00 3.86
405 406 9.599866 AGGATTAAACTGTTTTTCTTTTTCTGG 57.400 29.630 11.48 0.00 0.00 3.86
408 409 9.098355 AGCAGGATTAAACTGTTTTTCTTTTTC 57.902 29.630 11.48 0.00 38.22 2.29
409 410 9.448438 AAGCAGGATTAAACTGTTTTTCTTTTT 57.552 25.926 11.48 1.51 36.20 1.94
410 411 9.098355 GAAGCAGGATTAAACTGTTTTTCTTTT 57.902 29.630 11.48 0.00 39.09 2.27
415 416 5.985530 GCAGAAGCAGGATTAAACTGTTTTT 59.014 36.000 11.48 0.00 39.09 1.94
416 417 5.509670 GGCAGAAGCAGGATTAAACTGTTTT 60.510 40.000 11.48 0.00 44.61 2.43
417 418 4.021981 GGCAGAAGCAGGATTAAACTGTTT 60.022 41.667 10.98 10.98 44.61 2.83
427 428 3.202548 CCATTGGCAGAAGCAGGAT 57.797 52.632 0.00 0.00 44.61 3.24
442 443 5.687166 AAAGATTGGATTGAATGTGCCAT 57.313 34.783 0.00 0.00 0.00 4.40
532 533 4.142924 CGCTGCATTTCAACATACAGTACA 60.143 41.667 0.00 0.00 0.00 2.90
598 601 5.764686 TGATTAAGAAACATGACAGTGCACT 59.235 36.000 15.25 15.25 0.00 4.40
666 3985 9.918630 ATGAATTCAAAGACAAACATTAGAAGG 57.081 29.630 13.09 0.00 0.00 3.46
693 4020 0.249405 CTTCTGATCTGCGAGAGGCC 60.249 60.000 0.00 0.00 42.61 5.19
771 4102 0.040058 ATCTGCCCAACCTTGATGCA 59.960 50.000 0.00 0.00 35.50 3.96
772 4103 0.743097 GATCTGCCCAACCTTGATGC 59.257 55.000 0.00 0.00 0.00 3.91
827 4158 1.985116 GGTCGGAGAAGGAGCCTGT 60.985 63.158 0.00 0.00 39.69 4.00
1093 4444 1.291272 GCCCAGGAAGCAAAAGCTG 59.709 57.895 0.00 0.00 0.00 4.24
1111 4462 2.245159 TGAGATGGCCATAAGAAGCG 57.755 50.000 20.84 0.00 0.00 4.68
1185 4536 2.430465 CTGGAATCTGTGGTGGTGAAG 58.570 52.381 0.00 0.00 0.00 3.02
1219 4570 0.682209 GGGCACCGTAGTAGACCTCA 60.682 60.000 0.00 0.00 40.86 3.86
1310 4661 4.407621 TCTCAACCAAGAGTGACTACCAAA 59.592 41.667 0.00 0.00 36.97 3.28
1637 4994 4.736759 GCTGATGAAGATTGCCCAATTCTG 60.737 45.833 0.00 0.00 0.00 3.02
1678 5035 3.435026 CCGGGTTCATGAAGGATAATGGT 60.435 47.826 8.80 0.00 0.00 3.55
1870 8705 4.031636 TCAACATCATCAACCATCACCA 57.968 40.909 0.00 0.00 0.00 4.17
1871 8706 4.735578 GCATCAACATCATCAACCATCACC 60.736 45.833 0.00 0.00 0.00 4.02
1890 8727 2.760092 TGCCTAAACCAAGGAATGCATC 59.240 45.455 0.00 0.00 39.15 3.91
1903 8740 3.186613 GCAGTAATAGCCGATGCCTAAAC 59.813 47.826 0.00 0.00 38.69 2.01
1974 8811 3.604875 TCCCTACCGATGTTTCAGAAC 57.395 47.619 0.00 0.00 36.29 3.01
1975 8812 5.943349 TTATCCCTACCGATGTTTCAGAA 57.057 39.130 0.00 0.00 0.00 3.02
2026 8863 4.116782 TGCCATGCTCCAATTATACCAT 57.883 40.909 0.00 0.00 0.00 3.55
2193 9031 6.038271 ACACTGAAATTGACAGTTCCAGTAAC 59.962 38.462 13.53 0.00 44.69 2.50
2228 9066 7.042187 TCCAAAATCAAACATTCAAAATCACCG 60.042 33.333 0.00 0.00 0.00 4.94
2230 9068 9.601971 CATCCAAAATCAAACATTCAAAATCAC 57.398 29.630 0.00 0.00 0.00 3.06
2274 9134 4.893608 TCAGGATTGAGATGTTCGAAACA 58.106 39.130 0.00 0.73 46.94 2.83
2275 9135 6.428385 AATCAGGATTGAGATGTTCGAAAC 57.572 37.500 0.00 0.00 36.61 2.78
2287 9147 7.318141 GCAGAATTTGAAGAAATCAGGATTGA 58.682 34.615 0.00 0.00 39.77 2.57
2309 9169 2.232941 ACAAGGCATTCAGATTTGGCAG 59.767 45.455 9.34 4.97 40.61 4.85
2329 9189 1.135460 CGTACGGGACTCTTTGGAGAC 60.135 57.143 7.57 0.00 41.86 3.36
2347 9207 9.340695 CATGTTTCATGTATGTTTCATTAACGT 57.659 29.630 0.00 0.00 39.72 3.99
2348 9208 8.313227 GCATGTTTCATGTATGTTTCATTAACG 58.687 33.333 10.68 0.00 39.72 3.18
2365 9435 4.202336 ACCAATCAACCAATGCATGTTTCA 60.202 37.500 0.00 0.00 0.00 2.69
2379 9449 3.255642 ACAGCCATTGTACACCAATCAAC 59.744 43.478 0.00 0.00 41.93 3.18
2414 9488 0.107312 CAGGAGAACATGCTGGGGAG 60.107 60.000 0.00 0.00 43.30 4.30
2440 9514 3.374745 CATCAACACCTTCAGCAAACAC 58.625 45.455 0.00 0.00 0.00 3.32
2441 9515 2.223782 GCATCAACACCTTCAGCAAACA 60.224 45.455 0.00 0.00 0.00 2.83
2444 9518 1.689984 TGCATCAACACCTTCAGCAA 58.310 45.000 0.00 0.00 0.00 3.91
2445 9519 1.913778 ATGCATCAACACCTTCAGCA 58.086 45.000 0.00 0.00 34.78 4.41
2468 9542 3.447229 TCTCCAGATAATCGAACAGCACA 59.553 43.478 0.00 0.00 0.00 4.57
2469 9543 4.046938 TCTCCAGATAATCGAACAGCAC 57.953 45.455 0.00 0.00 0.00 4.40
2477 9551 4.942852 AGTTGCTCTTCTCCAGATAATCG 58.057 43.478 0.00 0.00 0.00 3.34
2525 9599 7.807977 TTTTTGCTCTTCTACACTCAGAAAT 57.192 32.000 0.00 0.00 34.22 2.17
2526 9600 7.807977 ATTTTTGCTCTTCTACACTCAGAAA 57.192 32.000 0.00 0.00 34.22 2.52
2529 9603 8.725148 ACATAATTTTTGCTCTTCTACACTCAG 58.275 33.333 0.00 0.00 0.00 3.35
2531 9605 9.974750 GTACATAATTTTTGCTCTTCTACACTC 57.025 33.333 0.00 0.00 0.00 3.51
2613 9687 5.486526 AGAACTAGCAGTCATCTTCCAAAG 58.513 41.667 0.00 0.00 0.00 2.77
2623 9697 4.082517 CAGCTCACTTAGAACTAGCAGTCA 60.083 45.833 0.00 0.00 35.63 3.41
2627 9701 5.667539 AATCAGCTCACTTAGAACTAGCA 57.332 39.130 0.00 0.00 35.63 3.49
2629 9703 9.646427 ACTAAAAATCAGCTCACTTAGAACTAG 57.354 33.333 0.00 0.00 0.00 2.57
2632 9706 8.089115 ACACTAAAAATCAGCTCACTTAGAAC 57.911 34.615 0.00 0.00 0.00 3.01
2635 9709 9.813080 GTTAACACTAAAAATCAGCTCACTTAG 57.187 33.333 0.00 0.00 0.00 2.18
2639 9713 9.516314 AAAAGTTAACACTAAAAATCAGCTCAC 57.484 29.630 8.61 0.00 30.68 3.51
2643 9717 8.539674 CACCAAAAGTTAACACTAAAAATCAGC 58.460 33.333 8.61 0.00 30.68 4.26
2651 9725 7.608761 ACTTCTGACACCAAAAGTTAACACTAA 59.391 33.333 8.61 0.00 30.68 2.24
2654 9728 6.190954 ACTTCTGACACCAAAAGTTAACAC 57.809 37.500 8.61 0.00 0.00 3.32
2659 9733 7.823745 ATCATAACTTCTGACACCAAAAGTT 57.176 32.000 0.00 0.00 42.74 2.66
2661 9735 8.971321 CAAAATCATAACTTCTGACACCAAAAG 58.029 33.333 0.00 0.00 0.00 2.27
2666 9740 5.622233 GCCCAAAATCATAACTTCTGACACC 60.622 44.000 0.00 0.00 0.00 4.16
2668 9742 4.462483 GGCCCAAAATCATAACTTCTGACA 59.538 41.667 0.00 0.00 0.00 3.58
2669 9743 4.706962 AGGCCCAAAATCATAACTTCTGAC 59.293 41.667 0.00 0.00 0.00 3.51
2670 9744 4.934356 AGGCCCAAAATCATAACTTCTGA 58.066 39.130 0.00 0.00 0.00 3.27
2671 9745 5.221126 GCTAGGCCCAAAATCATAACTTCTG 60.221 44.000 0.00 0.00 0.00 3.02
2672 9746 4.889995 GCTAGGCCCAAAATCATAACTTCT 59.110 41.667 0.00 0.00 0.00 2.85
2674 9748 4.609301 TGCTAGGCCCAAAATCATAACTT 58.391 39.130 0.00 0.00 0.00 2.66
2677 9751 5.163322 CCAAATGCTAGGCCCAAAATCATAA 60.163 40.000 0.00 0.00 0.00 1.90
2678 9752 4.344679 CCAAATGCTAGGCCCAAAATCATA 59.655 41.667 0.00 0.00 0.00 2.15
2690 9768 5.389859 TCACATTCAAACCAAATGCTAGG 57.610 39.130 0.00 0.00 37.58 3.02
2712 9790 0.550914 TTGGGATAGAGGCGGCAATT 59.449 50.000 13.08 0.00 0.00 2.32
2719 9797 7.095017 CGAAGAAATTAGAATTGGGATAGAGGC 60.095 40.741 0.00 0.00 0.00 4.70
2754 9832 5.238868 GGGACGATTCTAAAAATAGAAGGGC 59.761 44.000 4.78 1.92 39.19 5.19
2755 9833 6.260271 GTGGGACGATTCTAAAAATAGAAGGG 59.740 42.308 4.78 2.19 39.19 3.95
2758 9836 7.391620 ACAGTGGGACGATTCTAAAAATAGAA 58.608 34.615 0.00 1.16 40.01 2.10
2759 9837 6.942976 ACAGTGGGACGATTCTAAAAATAGA 58.057 36.000 0.00 0.00 0.00 1.98
2762 9840 6.001460 TGAACAGTGGGACGATTCTAAAAAT 58.999 36.000 0.00 0.00 0.00 1.82
2763 9841 5.369833 TGAACAGTGGGACGATTCTAAAAA 58.630 37.500 0.00 0.00 0.00 1.94
2766 9844 4.221924 TGATGAACAGTGGGACGATTCTAA 59.778 41.667 0.00 0.00 0.00 2.10
2768 9846 2.567169 TGATGAACAGTGGGACGATTCT 59.433 45.455 0.00 0.00 0.00 2.40
2769 9847 2.972625 TGATGAACAGTGGGACGATTC 58.027 47.619 0.00 0.00 0.00 2.52
2770 9848 3.417069 TTGATGAACAGTGGGACGATT 57.583 42.857 0.00 0.00 0.00 3.34
2771 9849 3.535561 GATTGATGAACAGTGGGACGAT 58.464 45.455 0.00 0.00 0.00 3.73
2772 9850 2.354704 GGATTGATGAACAGTGGGACGA 60.355 50.000 0.00 0.00 0.00 4.20
2773 9851 2.009774 GGATTGATGAACAGTGGGACG 58.990 52.381 0.00 0.00 0.00 4.79
2778 9868 1.739466 CACCGGGATTGATGAACAGTG 59.261 52.381 6.32 0.00 0.00 3.66
2792 9882 1.269831 GCTTATAGTCTCAGCACCGGG 60.270 57.143 6.32 0.00 33.45 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.