Multiple sequence alignment - TraesCS7A01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G040900 chr7A 100.000 6204 0 0 1 6204 19002197 19008400 0.000000e+00 11457.0
1 TraesCS7A01G040900 chr7A 95.833 96 4 0 6024 6119 19035312 19035407 8.330000e-34 156.0
2 TraesCS7A01G040900 chr7D 89.744 6006 374 106 1 5901 18678557 18684425 0.000000e+00 7456.0
3 TraesCS7A01G040900 chr7D 91.803 183 13 1 6024 6204 18684423 18684605 2.870000e-63 254.0
4 TraesCS7A01G040900 chr7D 91.304 115 8 1 5788 5900 18689753 18689867 8.330000e-34 156.0
5 TraesCS7A01G040900 chr4A 91.681 3378 226 24 2218 5575 714179222 714175880 0.000000e+00 4630.0
6 TraesCS7A01G040900 chr4A 84.053 1367 129 35 948 2240 714180583 714179232 0.000000e+00 1234.0
7 TraesCS7A01G040900 chr4A 79.764 509 23 23 207 661 714181172 714180690 4.700000e-76 296.0
8 TraesCS7A01G040900 chr4A 93.939 99 6 0 6024 6122 714175541 714175443 3.870000e-32 150.0
9 TraesCS7A01G040900 chr4A 83.432 169 11 6 5577 5728 714175808 714175640 2.330000e-29 141.0
10 TraesCS7A01G040900 chr4A 94.231 52 3 0 5788 5839 714175618 714175567 5.160000e-11 80.5
11 TraesCS7A01G040900 chr2D 77.325 1570 276 60 3081 4620 119069143 119067624 0.000000e+00 854.0
12 TraesCS7A01G040900 chr2D 90.270 185 18 0 2271 2455 119070259 119070075 6.210000e-60 243.0
13 TraesCS7A01G040900 chr2D 77.000 400 70 16 1754 2148 119070739 119070357 6.300000e-50 209.0
14 TraesCS7A01G040900 chr2D 87.898 157 19 0 2271 2427 31033153 31033309 1.060000e-42 185.0
15 TraesCS7A01G040900 chr2D 83.846 130 16 3 146 273 462261812 462261686 1.090000e-22 119.0
16 TraesCS7A01G040900 chr2B 91.351 185 16 0 2271 2455 171033798 171033614 2.870000e-63 254.0
17 TraesCS7A01G040900 chr2B 92.086 139 10 1 5889 6026 75678784 75678646 1.760000e-45 195.0
18 TraesCS7A01G040900 chr2B 92.593 135 10 0 5892 6026 199013719 199013853 1.760000e-45 195.0
19 TraesCS7A01G040900 chr2B 90.780 141 13 0 5899 6039 54547751 54547891 8.210000e-44 189.0
20 TraesCS7A01G040900 chr2A 91.351 185 16 0 2271 2455 121144701 121144517 2.870000e-63 254.0
21 TraesCS7A01G040900 chr2A 85.792 183 26 0 2273 2455 33320650 33320468 1.760000e-45 195.0
22 TraesCS7A01G040900 chr5B 93.939 132 8 0 5894 6025 202239227 202239358 3.790000e-47 200.0
23 TraesCS7A01G040900 chr5D 92.086 139 10 1 5898 6035 115924649 115924511 1.760000e-45 195.0
24 TraesCS7A01G040900 chr5D 92.086 139 10 1 5898 6035 241844077 241844215 1.760000e-45 195.0
25 TraesCS7A01G040900 chr4B 90.411 146 11 2 5895 6039 340640640 340640783 8.210000e-44 189.0
26 TraesCS7A01G040900 chr4B 81.356 118 18 2 158 274 400840769 400840655 6.620000e-15 93.5
27 TraesCS7A01G040900 chr3D 89.189 148 14 2 5892 6038 6168870 6168724 3.820000e-42 183.0
28 TraesCS7A01G040900 chr1B 85.882 170 16 7 5889 6054 619216043 619216208 2.300000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G040900 chr7A 19002197 19008400 6203 False 11457.000000 11457 100.000000 1 6204 1 chr7A.!!$F1 6203
1 TraesCS7A01G040900 chr7D 18678557 18684605 6048 False 3855.000000 7456 90.773500 1 6204 2 chr7D.!!$F2 6203
2 TraesCS7A01G040900 chr4A 714175443 714181172 5729 True 1088.583333 4630 87.850000 207 6122 6 chr4A.!!$R1 5915
3 TraesCS7A01G040900 chr2D 119067624 119070739 3115 True 435.333333 854 81.531667 1754 4620 3 chr2D.!!$R2 2866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 808 0.105224 TTGAACTTCTCGCCGGACAA 59.895 50.000 5.05 0.0 0.00 3.18 F
752 825 0.110486 CAACACCTGGGCTACCTGTT 59.890 55.000 0.00 0.0 34.16 3.16 F
757 830 0.112412 CCTGGGCTACCTGTTGGTTT 59.888 55.000 0.00 0.0 46.05 3.27 F
1140 1230 0.253160 ATTCCCTCCCCTGCACTGTA 60.253 55.000 0.00 0.0 0.00 2.74 F
2415 2602 0.044855 AGGAGAGCATGTACCCCCTT 59.955 55.000 0.00 0.0 0.00 3.95 F
3285 3824 1.004044 CTTCTCCCTGATGCAACTGGT 59.996 52.381 16.87 0.0 0.00 4.00 F
4259 4800 0.671472 TGAGCTGCAACGGTCTGATG 60.671 55.000 1.02 0.0 32.83 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 1993 0.177604 CGCCATCCTTGAGCTTCTCT 59.822 55.000 0.00 0.0 0.00 3.10 R
2280 2467 0.392193 ATGGCTCAAAGTCCAGCTCG 60.392 55.000 0.00 0.0 35.57 5.03 R
2415 2602 2.261671 GCGCGGAGGAAGTTGAGA 59.738 61.111 8.83 0.0 0.00 3.27 R
3069 3570 3.011708 ACAACCTTTGGGGAATCATAGCT 59.988 43.478 0.00 0.0 38.76 3.32 R
3321 3860 0.250901 GGATGTGGGTGTGCTCTGTT 60.251 55.000 0.00 0.0 0.00 3.16 R
4757 5298 0.378257 GACCACCATATGCAGTTGCG 59.622 55.000 0.00 0.0 45.83 4.85 R
6008 6652 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.625818 TCTCTCTGCTTCCCTTGGTTC 59.374 52.381 0.00 0.00 0.00 3.62
24 25 0.401738 TCTGCTTCCCTTGGTTCCTG 59.598 55.000 0.00 0.00 0.00 3.86
67 68 2.675371 TCCTCGCGGAGAAGGAGA 59.325 61.111 10.02 0.00 33.30 3.71
75 76 0.174617 CGGAGAAGGAGAGCAAGGTC 59.825 60.000 0.00 0.00 0.00 3.85
78 79 1.206849 GAGAAGGAGAGCAAGGTCAGG 59.793 57.143 1.84 0.00 0.00 3.86
80 81 0.689623 AAGGAGAGCAAGGTCAGGTG 59.310 55.000 1.84 0.00 0.00 4.00
81 82 0.178921 AGGAGAGCAAGGTCAGGTGA 60.179 55.000 1.84 0.00 0.00 4.02
82 83 0.248843 GGAGAGCAAGGTCAGGTGAG 59.751 60.000 1.84 0.00 0.00 3.51
89 90 2.574399 GGTCAGGTGAGCTCGTCC 59.426 66.667 16.82 16.82 39.31 4.79
90 91 1.979693 GGTCAGGTGAGCTCGTCCT 60.980 63.158 20.16 20.16 39.31 3.85
91 92 1.509004 GTCAGGTGAGCTCGTCCTC 59.491 63.158 22.19 12.03 0.00 3.71
92 93 1.679305 TCAGGTGAGCTCGTCCTCC 60.679 63.158 22.19 13.25 0.00 4.30
93 94 1.680651 CAGGTGAGCTCGTCCTCCT 60.681 63.158 22.19 14.93 0.00 3.69
94 95 1.680651 AGGTGAGCTCGTCCTCCTG 60.681 63.158 20.16 0.00 30.27 3.86
95 96 2.183046 GTGAGCTCGTCCTCCTGC 59.817 66.667 9.64 0.00 0.00 4.85
96 97 3.071206 TGAGCTCGTCCTCCTGCC 61.071 66.667 9.64 0.00 0.00 4.85
97 98 3.071206 GAGCTCGTCCTCCTGCCA 61.071 66.667 0.00 0.00 0.00 4.92
98 99 2.604686 AGCTCGTCCTCCTGCCAA 60.605 61.111 0.00 0.00 0.00 4.52
99 100 1.965754 GAGCTCGTCCTCCTGCCAAT 61.966 60.000 0.00 0.00 0.00 3.16
100 101 1.817099 GCTCGTCCTCCTGCCAATG 60.817 63.158 0.00 0.00 0.00 2.82
101 102 1.817099 CTCGTCCTCCTGCCAATGC 60.817 63.158 0.00 0.00 38.26 3.56
102 103 2.825836 CGTCCTCCTGCCAATGCC 60.826 66.667 0.00 0.00 36.33 4.40
103 104 2.356278 GTCCTCCTGCCAATGCCA 59.644 61.111 0.00 0.00 36.33 4.92
106 107 0.685131 TCCTCCTGCCAATGCCAATG 60.685 55.000 0.00 0.00 36.33 2.82
115 116 1.658994 CAATGCCAATGCCAATGGAC 58.341 50.000 2.05 0.00 40.56 4.02
133 134 2.158645 GGACTTCTTCTTTCTTCTGCGC 59.841 50.000 0.00 0.00 0.00 6.09
156 157 2.027837 TGCTCTGCTATGCTCTGTTTCA 60.028 45.455 0.00 0.00 0.00 2.69
170 171 1.947146 TTTCAGTGTCGTCGGTGCG 60.947 57.895 0.00 0.00 0.00 5.34
190 192 1.268079 GGCTTCCTCTGTTTTGCTGTC 59.732 52.381 0.00 0.00 0.00 3.51
342 371 3.383505 GGTTTAAGGTTTCAGCACCAACT 59.616 43.478 0.00 0.00 39.62 3.16
359 394 1.830279 ACTCACCAAGTGGATGCATG 58.170 50.000 2.46 0.00 36.65 4.06
364 399 0.387929 CCAAGTGGATGCATGGATGC 59.612 55.000 11.88 11.88 45.65 3.91
384 419 2.891112 CTGTCAGATCTGGTGAGCTTC 58.109 52.381 22.42 4.53 36.73 3.86
385 420 2.233186 CTGTCAGATCTGGTGAGCTTCA 59.767 50.000 22.42 8.23 36.73 3.02
386 421 2.233186 TGTCAGATCTGGTGAGCTTCAG 59.767 50.000 22.42 0.00 36.73 3.02
387 422 2.233431 GTCAGATCTGGTGAGCTTCAGT 59.767 50.000 22.42 1.96 36.73 3.41
388 423 2.495270 TCAGATCTGGTGAGCTTCAGTC 59.505 50.000 22.42 8.66 36.73 3.51
390 425 0.534412 ATCTGGTGAGCTTCAGTCCG 59.466 55.000 10.89 0.00 33.13 4.79
391 426 0.827925 TCTGGTGAGCTTCAGTCCGT 60.828 55.000 10.89 0.00 33.13 4.69
392 427 0.668706 CTGGTGAGCTTCAGTCCGTG 60.669 60.000 0.00 0.00 0.00 4.94
415 474 1.739562 CAAGTCTGCGCCTCAGTCC 60.740 63.158 4.18 0.00 43.32 3.85
422 481 4.554363 CGCCTCAGTCCGCGTAGG 62.554 72.222 4.92 4.86 43.35 3.18
428 487 2.359107 AGTCCGCGTAGGTGTCGA 60.359 61.111 4.92 0.00 41.99 4.20
432 491 2.430942 CCGCGTAGGTGTCGAAACG 61.431 63.158 4.92 0.74 38.34 3.60
663 736 4.058797 CGGCTTCGGTTCCAAGTT 57.941 55.556 0.00 0.00 0.00 2.66
664 737 1.866925 CGGCTTCGGTTCCAAGTTC 59.133 57.895 0.00 0.00 0.00 3.01
665 738 1.574702 CGGCTTCGGTTCCAAGTTCC 61.575 60.000 0.00 0.00 0.00 3.62
666 739 0.536460 GGCTTCGGTTCCAAGTTCCA 60.536 55.000 0.00 0.00 0.00 3.53
667 740 1.314730 GCTTCGGTTCCAAGTTCCAA 58.685 50.000 0.00 0.00 0.00 3.53
703 776 4.418401 CATGCAAACCCACCGGCG 62.418 66.667 0.00 0.00 0.00 6.46
718 791 3.768632 GCGTCTGTCGGCTACTTG 58.231 61.111 0.00 0.00 40.26 3.16
735 808 0.105224 TTGAACTTCTCGCCGGACAA 59.895 50.000 5.05 0.00 0.00 3.18
750 823 0.321653 GACAACACCTGGGCTACCTG 60.322 60.000 0.00 0.00 37.76 4.00
752 825 0.110486 CAACACCTGGGCTACCTGTT 59.890 55.000 0.00 0.00 34.16 3.16
754 827 1.002134 CACCTGGGCTACCTGTTGG 60.002 63.158 0.00 0.00 37.76 3.77
756 829 1.065997 ACCTGGGCTACCTGTTGGTT 61.066 55.000 0.00 0.00 46.05 3.67
757 830 0.112412 CCTGGGCTACCTGTTGGTTT 59.888 55.000 0.00 0.00 46.05 3.27
758 831 1.534729 CTGGGCTACCTGTTGGTTTC 58.465 55.000 0.00 0.00 46.05 2.78
759 832 1.073923 CTGGGCTACCTGTTGGTTTCT 59.926 52.381 0.00 0.00 46.05 2.52
760 833 1.073284 TGGGCTACCTGTTGGTTTCTC 59.927 52.381 0.00 0.00 46.05 2.87
761 834 1.073284 GGGCTACCTGTTGGTTTCTCA 59.927 52.381 0.00 0.00 46.05 3.27
762 835 2.152016 GGCTACCTGTTGGTTTCTCAC 58.848 52.381 0.00 0.00 46.05 3.51
763 836 2.224548 GGCTACCTGTTGGTTTCTCACT 60.225 50.000 0.00 0.00 46.05 3.41
764 837 3.477530 GCTACCTGTTGGTTTCTCACTT 58.522 45.455 0.00 0.00 46.05 3.16
765 838 3.498777 GCTACCTGTTGGTTTCTCACTTC 59.501 47.826 0.00 0.00 46.05 3.01
766 839 3.644966 ACCTGTTGGTTTCTCACTTCA 57.355 42.857 0.00 0.00 46.05 3.02
767 840 3.545703 ACCTGTTGGTTTCTCACTTCAG 58.454 45.455 0.00 0.00 46.05 3.02
768 841 3.199946 ACCTGTTGGTTTCTCACTTCAGA 59.800 43.478 0.00 0.00 46.05 3.27
769 842 4.141390 ACCTGTTGGTTTCTCACTTCAGAT 60.141 41.667 0.00 0.00 46.05 2.90
770 843 4.453819 CCTGTTGGTTTCTCACTTCAGATC 59.546 45.833 0.00 0.00 0.00 2.75
771 844 4.389374 TGTTGGTTTCTCACTTCAGATCC 58.611 43.478 0.00 0.00 0.00 3.36
772 845 3.319137 TGGTTTCTCACTTCAGATCCG 57.681 47.619 0.00 0.00 0.00 4.18
923 999 3.072915 TGGTCTTCTCCAAATCTTGCTCA 59.927 43.478 0.00 0.00 34.24 4.26
931 1007 2.094854 CCAAATCTTGCTCAGTTCCTGC 60.095 50.000 0.00 0.00 0.00 4.85
966 1042 2.797156 CTCTGAACTGAAGAACACACCG 59.203 50.000 0.00 0.00 0.00 4.94
987 1068 3.002042 CGCTGATAATCTTGTTCTGCAGG 59.998 47.826 15.13 0.00 34.98 4.85
988 1069 3.243002 GCTGATAATCTTGTTCTGCAGGC 60.243 47.826 15.13 8.06 35.27 4.85
989 1070 4.197750 CTGATAATCTTGTTCTGCAGGCT 58.802 43.478 15.13 0.00 0.00 4.58
1044 1129 3.699894 CTCAGCCGCCTCCACAGT 61.700 66.667 0.00 0.00 0.00 3.55
1120 1210 2.465055 CTTCACCAGGTTCGACCCCC 62.465 65.000 0.00 0.00 39.75 5.40
1140 1230 0.253160 ATTCCCTCCCCTGCACTGTA 60.253 55.000 0.00 0.00 0.00 2.74
1145 1235 0.674895 CTCCCCTGCACTGTAACTGC 60.675 60.000 0.00 0.00 35.03 4.40
1150 1240 2.611518 CCTGCACTGTAACTGCTACTC 58.388 52.381 0.00 0.00 35.53 2.59
1155 1245 5.123227 TGCACTGTAACTGCTACTCTTTTT 58.877 37.500 0.00 0.00 35.53 1.94
1200 1290 3.658709 GCAAGTATGTAGATCTCCTGGC 58.341 50.000 0.00 0.00 0.00 4.85
1215 1305 2.062922 TGGCGGTGGCTAGAAGAAA 58.937 52.632 0.00 0.00 39.81 2.52
1217 1307 0.803117 GGCGGTGGCTAGAAGAAAAC 59.197 55.000 0.00 0.00 39.81 2.43
1218 1308 1.610886 GGCGGTGGCTAGAAGAAAACT 60.611 52.381 0.00 0.00 39.81 2.66
1219 1309 1.464997 GCGGTGGCTAGAAGAAAACTG 59.535 52.381 0.00 0.00 35.83 3.16
1220 1310 2.767505 CGGTGGCTAGAAGAAAACTGT 58.232 47.619 0.00 0.00 0.00 3.55
1221 1311 3.139077 CGGTGGCTAGAAGAAAACTGTT 58.861 45.455 0.00 0.00 0.00 3.16
1222 1312 3.058914 CGGTGGCTAGAAGAAAACTGTTG 60.059 47.826 0.00 0.00 0.00 3.33
1223 1313 3.304726 GGTGGCTAGAAGAAAACTGTTGC 60.305 47.826 0.00 0.00 0.00 4.17
1224 1314 3.315191 GTGGCTAGAAGAAAACTGTTGCA 59.685 43.478 0.00 0.00 0.00 4.08
1226 1316 5.181245 GTGGCTAGAAGAAAACTGTTGCATA 59.819 40.000 0.00 0.00 0.00 3.14
1228 1318 6.264292 TGGCTAGAAGAAAACTGTTGCATAAA 59.736 34.615 0.00 0.00 0.00 1.40
1229 1319 7.039784 TGGCTAGAAGAAAACTGTTGCATAAAT 60.040 33.333 0.00 0.00 0.00 1.40
1230 1320 7.486232 GGCTAGAAGAAAACTGTTGCATAAATC 59.514 37.037 0.00 0.00 0.00 2.17
1231 1321 8.239998 GCTAGAAGAAAACTGTTGCATAAATCT 58.760 33.333 0.00 0.00 0.00 2.40
1232 1322 9.552114 CTAGAAGAAAACTGTTGCATAAATCTG 57.448 33.333 0.00 0.00 0.00 2.90
1233 1323 7.373493 AGAAGAAAACTGTTGCATAAATCTGG 58.627 34.615 0.00 0.00 0.00 3.86
1234 1324 5.473039 AGAAAACTGTTGCATAAATCTGGC 58.527 37.500 0.00 0.00 0.00 4.85
1235 1325 3.492421 AACTGTTGCATAAATCTGGCG 57.508 42.857 0.00 0.00 0.00 5.69
1236 1326 2.436417 ACTGTTGCATAAATCTGGCGT 58.564 42.857 0.00 0.00 0.00 5.68
1238 1328 1.742831 TGTTGCATAAATCTGGCGTCC 59.257 47.619 0.00 0.00 0.00 4.79
1239 1329 1.065551 GTTGCATAAATCTGGCGTCCC 59.934 52.381 0.00 0.00 0.00 4.46
1240 1330 0.465460 TGCATAAATCTGGCGTCCCC 60.465 55.000 0.00 0.00 0.00 4.81
1277 1384 4.724399 TGCCAAACTTCATTCCTACTCAA 58.276 39.130 0.00 0.00 0.00 3.02
1278 1385 4.518970 TGCCAAACTTCATTCCTACTCAAC 59.481 41.667 0.00 0.00 0.00 3.18
1377 1491 0.951040 CCTCGTGCTGTTGGAGTTCC 60.951 60.000 0.00 0.00 0.00 3.62
1404 1544 1.908340 GCTGCCAGATCTGACCAGGT 61.908 60.000 28.89 0.00 33.45 4.00
1418 1558 1.220206 CAGGTGCAGCTGGGTAGAG 59.780 63.158 33.27 10.19 0.00 2.43
1589 1732 1.686355 AATGCACCGTCAAAACCAGA 58.314 45.000 0.00 0.00 0.00 3.86
1639 1782 7.652105 CCAAATTCTTCTCTAAATGATGCATGG 59.348 37.037 2.46 0.00 0.00 3.66
1689 1832 8.408601 GTCACCAATCTGACTTGCAAATATATT 58.591 33.333 0.00 0.00 38.05 1.28
1725 1868 4.151335 ACTCGATGCGATAATTCTGAATGC 59.849 41.667 3.22 3.73 34.61 3.56
1838 1981 1.812507 GTACAACACCGCGATCCCC 60.813 63.158 8.23 0.00 0.00 4.81
1841 1984 3.697747 AACACCGCGATCCCCGAA 61.698 61.111 8.23 0.00 41.76 4.30
1850 1993 2.759973 ATCCCCGAAGCAGAGCGA 60.760 61.111 0.00 0.00 0.00 4.93
1934 2077 6.630071 ACTTCTTATCTCAGCAGACTTCTTC 58.370 40.000 0.00 0.00 0.00 2.87
1967 2110 5.212934 GTTTGCTTTACCTGTTGCTCTAAC 58.787 41.667 0.00 0.00 39.80 2.34
2100 2243 2.088423 CTCGCTGTAGAGGAGTTGAGT 58.912 52.381 0.00 0.00 34.74 3.41
2118 2261 0.685097 GTGTCCCTGAGTACCTGCAA 59.315 55.000 0.00 0.00 0.00 4.08
2133 2276 2.094854 CCTGCAATTCAAGGAACAGCTC 60.095 50.000 0.00 0.00 0.00 4.09
2149 2292 2.093447 CAGCTCGTGGAAGGAAGGTAAT 60.093 50.000 0.00 0.00 0.00 1.89
2151 2294 3.009143 AGCTCGTGGAAGGAAGGTAATTT 59.991 43.478 0.00 0.00 0.00 1.82
2153 2296 4.217767 GCTCGTGGAAGGAAGGTAATTTTT 59.782 41.667 0.00 0.00 0.00 1.94
2191 2346 3.981071 CCAGAACTGGGATACTGAACA 57.019 47.619 12.54 0.00 46.81 3.18
2201 2356 7.861629 ACTGGGATACTGAACAGATAATTTGA 58.138 34.615 8.87 0.00 35.08 2.69
2223 2410 7.964604 TGATTCTCTTGCTCTGATGATATTG 57.035 36.000 0.00 0.00 0.00 1.90
2227 2414 8.604640 TTCTCTTGCTCTGATGATATTGATTC 57.395 34.615 0.00 0.00 0.00 2.52
2229 2416 8.208903 TCTCTTGCTCTGATGATATTGATTCAA 58.791 33.333 0.75 0.75 0.00 2.69
2240 2427 9.961265 GATGATATTGATTCAATGTTGTGTGAT 57.039 29.630 19.81 4.75 35.54 3.06
2415 2602 0.044855 AGGAGAGCATGTACCCCCTT 59.955 55.000 0.00 0.00 0.00 3.95
2457 2644 3.329520 ACAACTACAAGGGCATGGTAAGA 59.670 43.478 0.00 0.00 0.00 2.10
2460 2647 2.496899 ACAAGGGCATGGTAAGACAG 57.503 50.000 0.00 0.00 0.00 3.51
2503 2690 7.985634 TTGTTTAAACTTTGATGAGACTTGC 57.014 32.000 18.72 0.00 0.00 4.01
2536 2863 8.451908 AAAGAAGCATGTAAACTTGTACTCTT 57.548 30.769 0.00 2.46 0.00 2.85
2696 3195 5.626142 ACCAAGTGACCATTGTATTGTACA 58.374 37.500 0.00 0.00 36.79 2.90
2717 3216 9.899661 TGTACAGAATTATTAGCCAGTTAATGT 57.100 29.630 0.00 0.00 0.00 2.71
2758 3259 4.103153 TCAGAAGGAACCACTGAGATGTTT 59.897 41.667 13.34 0.00 36.04 2.83
3052 3553 7.865706 ATACATGGTCAAGTGATTAAACCTC 57.134 36.000 0.00 0.00 0.00 3.85
3185 3714 2.677836 CACACCACGGATCCTTATTGTG 59.322 50.000 10.75 12.65 0.00 3.33
3194 3723 3.865745 GGATCCTTATTGTGAGTGTGACG 59.134 47.826 3.84 0.00 0.00 4.35
3198 3727 3.675225 CCTTATTGTGAGTGTGACGTCTG 59.325 47.826 17.92 0.00 0.00 3.51
3235 3764 7.956420 AAACTTGTCGTATGATACTGAAACA 57.044 32.000 0.66 0.00 0.00 2.83
3236 3765 8.547967 AAACTTGTCGTATGATACTGAAACAT 57.452 30.769 0.66 0.00 0.00 2.71
3285 3824 1.004044 CTTCTCCCTGATGCAACTGGT 59.996 52.381 16.87 0.00 0.00 4.00
3321 3860 1.546961 GTCTTGAGAAGGTCCTCGGA 58.453 55.000 0.00 0.00 35.99 4.55
3478 4017 8.492673 TCATACCTTTGTCATTATTCACAGAC 57.507 34.615 0.00 0.00 0.00 3.51
3643 4184 7.279981 GTGTTACACATGTATGAATTCTAGCCA 59.720 37.037 10.96 0.00 34.08 4.75
3647 4188 6.540189 ACACATGTATGAATTCTAGCCACTTC 59.460 38.462 7.05 0.00 0.00 3.01
3654 4195 5.869579 TGAATTCTAGCCACTTCTCTGTTT 58.130 37.500 7.05 0.00 0.00 2.83
3655 4196 5.934625 TGAATTCTAGCCACTTCTCTGTTTC 59.065 40.000 7.05 0.00 0.00 2.78
3658 4199 1.889545 AGCCACTTCTCTGTTTCTGC 58.110 50.000 0.00 0.00 0.00 4.26
3699 4240 7.752239 CACATTGATCTTTTCTGATGTTACCAC 59.248 37.037 0.00 0.00 32.85 4.16
3704 4245 5.789521 TCTTTTCTGATGTTACCACGATCA 58.210 37.500 0.00 0.00 0.00 2.92
3721 4262 3.599343 GATCATTGGTCTGCAGTGTACA 58.401 45.455 14.67 5.98 0.00 2.90
3745 4286 1.064060 GCACACGCACTTGAGAAAACT 59.936 47.619 0.00 0.00 38.36 2.66
3888 4429 5.649395 TCCAAGAGATTGCTGGAAAGTAATG 59.351 40.000 0.00 0.00 0.00 1.90
3898 4439 6.664515 TGCTGGAAAGTAATGTTTCTTTACG 58.335 36.000 3.61 0.00 37.32 3.18
3904 4445 8.221766 GGAAAGTAATGTTTCTTTACGACTGAG 58.778 37.037 0.00 0.00 36.76 3.35
3910 4451 5.357257 TGTTTCTTTACGACTGAGCTTTCT 58.643 37.500 0.00 0.00 0.00 2.52
3939 4480 9.330063 GATGATATCCATCTGTTTTGTTGTAGA 57.670 33.333 0.00 0.00 46.33 2.59
3940 4481 8.492673 TGATATCCATCTGTTTTGTTGTAGAC 57.507 34.615 0.00 0.00 31.93 2.59
3942 4483 6.808008 ATCCATCTGTTTTGTTGTAGACAG 57.192 37.500 0.00 0.00 39.94 3.51
3944 4485 4.275689 CCATCTGTTTTGTTGTAGACAGCA 59.724 41.667 0.00 0.00 39.94 4.41
3945 4486 5.446709 CATCTGTTTTGTTGTAGACAGCAG 58.553 41.667 0.00 0.00 39.94 4.24
3946 4487 4.513442 TCTGTTTTGTTGTAGACAGCAGT 58.487 39.130 0.00 0.00 39.94 4.40
3971 4512 4.032310 TCTTTGCATGGCCTAATGGAAAT 58.968 39.130 18.88 0.00 43.90 2.17
3994 4535 1.322442 GCCTTTTCAGCAAGGACACT 58.678 50.000 4.77 0.00 45.79 3.55
4201 4742 7.779503 CTGCTCTACAGTAATGTTGACAACAAC 60.780 40.741 24.00 18.02 46.44 3.32
4220 4761 2.135933 ACGAGCACAAGTAAGAACTGC 58.864 47.619 0.00 0.00 35.62 4.40
4239 4780 2.227865 TGCAGAATTGTTTCTTACCGCC 59.772 45.455 0.00 0.00 40.28 6.13
4249 4790 1.375908 CTTACCGCCTGAGCTGCAA 60.376 57.895 1.02 0.00 36.60 4.08
4254 4795 3.426568 GCCTGAGCTGCAACGGTC 61.427 66.667 1.02 0.00 35.50 4.79
4259 4800 0.671472 TGAGCTGCAACGGTCTGATG 60.671 55.000 1.02 0.00 32.83 3.07
4315 4856 2.014068 GCAGGTATGTGCTCAAGGACC 61.014 57.143 8.90 8.90 40.54 4.46
4338 4879 4.268359 GGAACAAGCCAATCATCTTCTCT 58.732 43.478 0.00 0.00 0.00 3.10
4359 4900 1.890510 GGCTCGTTTGGACCGTGTT 60.891 57.895 0.00 0.00 0.00 3.32
4647 5188 4.037446 ACGTGTTGCATAAACCACATTCTT 59.963 37.500 0.00 0.00 38.06 2.52
4652 5193 3.577848 TGCATAAACCACATTCTTGCCTT 59.422 39.130 0.00 0.00 30.61 4.35
4661 5202 7.296628 ACCACATTCTTGCCTTGTAAAAATA 57.703 32.000 0.00 0.00 0.00 1.40
4709 5250 2.315246 GCCTGCTTTCTATGAGGCG 58.685 57.895 0.00 0.00 41.61 5.52
4757 5298 0.175989 CCTGCGGTCTTCCTACCTTC 59.824 60.000 0.00 0.00 37.39 3.46
4799 5340 1.530293 GCTGAGATCATCGTGAATGGC 59.470 52.381 0.00 0.00 35.94 4.40
4805 5346 0.246360 TCATCGTGAATGGCGTGTCT 59.754 50.000 0.00 0.00 35.94 3.41
4853 5394 1.745864 CAAGGCCTCTGCTCTGCTG 60.746 63.158 5.23 0.00 37.74 4.41
4993 5534 5.755409 TCCAAGGATAACTAGTTTGCTGA 57.245 39.130 14.49 4.77 0.00 4.26
5004 5545 6.163135 ACTAGTTTGCTGAGACTAACAGTT 57.837 37.500 0.00 0.00 37.64 3.16
5014 5563 9.944376 TGCTGAGACTAACAGTTATTCTTATTT 57.056 29.630 13.03 0.00 37.64 1.40
5095 5644 1.891150 TGGAAGTACGTCTCCAACCTC 59.109 52.381 10.62 0.00 0.00 3.85
5098 5647 1.901591 AGTACGTCTCCAACCTCGAA 58.098 50.000 0.00 0.00 0.00 3.71
5158 5707 1.673993 CAAGTACCGCACCATGGCA 60.674 57.895 13.04 0.00 0.00 4.92
5164 5713 4.424566 CGCACCATGGCAAGCACC 62.425 66.667 13.04 0.00 0.00 5.01
5275 5824 5.395682 TTGAGATTTGAGAATGCTTTGGG 57.604 39.130 0.00 0.00 0.00 4.12
5288 5837 3.496331 TGCTTTGGGTTTTCTTCCTAGG 58.504 45.455 0.82 0.82 0.00 3.02
5308 5858 3.507622 AGGCGCTGCTCTTTTTAAGATTT 59.492 39.130 7.64 0.00 36.82 2.17
5329 5879 0.882474 AGGTCGAGTCAGTGTGCTAC 59.118 55.000 0.00 0.00 0.00 3.58
5356 5913 3.708403 TTAGTAGTGGGAGTGAGTCGA 57.292 47.619 0.00 0.00 0.00 4.20
5422 5979 5.577945 TCGTATTTCTTGGATGTTACCGTTC 59.422 40.000 0.00 0.00 0.00 3.95
5432 5989 6.891388 TGGATGTTACCGTTCAATAATAGGT 58.109 36.000 0.00 0.00 38.86 3.08
5529 6086 6.209788 GCCACTGAGCTCTATTACCTAATACT 59.790 42.308 16.19 0.00 0.00 2.12
5531 6088 8.732531 CCACTGAGCTCTATTACCTAATACTAC 58.267 40.741 16.19 0.00 0.00 2.73
5633 6264 6.137104 AGTCACTCCACTAACTTAGTCCTA 57.863 41.667 0.00 0.00 36.76 2.94
5635 6266 4.948621 TCACTCCACTAACTTAGTCCTAGC 59.051 45.833 0.00 0.00 36.76 3.42
5649 6280 5.543507 AGTCCTAGCTTCTATGTGATTGG 57.456 43.478 0.00 0.00 0.00 3.16
5699 6343 6.152661 TGAATCCAACCCTTCACATATGAAAC 59.847 38.462 10.38 0.00 44.28 2.78
5707 6351 6.879458 ACCCTTCACATATGAAACTGTAGTTC 59.121 38.462 10.38 0.00 44.28 3.01
5747 6391 6.920569 ATTCGAGTTCGCTGGTAAAATTAT 57.079 33.333 0.00 0.00 39.60 1.28
5754 6398 6.653320 AGTTCGCTGGTAAAATTATGTTCTGA 59.347 34.615 0.00 0.00 0.00 3.27
5773 6417 3.093814 TGAAACTCGCACCCTCTATGTA 58.906 45.455 0.00 0.00 0.00 2.29
5774 6418 3.130516 TGAAACTCGCACCCTCTATGTAG 59.869 47.826 0.00 0.00 0.00 2.74
5775 6419 2.438800 ACTCGCACCCTCTATGTAGT 57.561 50.000 0.00 0.00 0.00 2.73
5776 6420 2.299521 ACTCGCACCCTCTATGTAGTC 58.700 52.381 0.00 0.00 0.00 2.59
5777 6421 2.298610 CTCGCACCCTCTATGTAGTCA 58.701 52.381 0.00 0.00 0.00 3.41
5778 6422 2.292016 CTCGCACCCTCTATGTAGTCAG 59.708 54.545 0.00 0.00 0.00 3.51
5779 6423 2.092592 TCGCACCCTCTATGTAGTCAGA 60.093 50.000 0.00 0.00 0.00 3.27
5780 6424 2.688446 CGCACCCTCTATGTAGTCAGAA 59.312 50.000 0.00 0.00 0.00 3.02
5781 6425 3.489398 CGCACCCTCTATGTAGTCAGAAC 60.489 52.174 0.00 0.00 0.00 3.01
5782 6426 3.702045 GCACCCTCTATGTAGTCAGAACT 59.298 47.826 0.00 0.00 39.66 3.01
5783 6427 4.202070 GCACCCTCTATGTAGTCAGAACTC 60.202 50.000 0.00 0.00 36.92 3.01
5784 6428 4.950475 CACCCTCTATGTAGTCAGAACTCA 59.050 45.833 0.00 0.00 36.92 3.41
5785 6429 5.067153 CACCCTCTATGTAGTCAGAACTCAG 59.933 48.000 0.00 0.00 36.92 3.35
5786 6430 5.044772 ACCCTCTATGTAGTCAGAACTCAGA 60.045 44.000 0.00 0.00 36.92 3.27
5791 6435 7.168905 TCTATGTAGTCAGAACTCAGAAGTCA 58.831 38.462 0.00 0.00 36.92 3.41
5849 6493 1.537643 CCTAGGAGGAGGGGCCATC 60.538 68.421 10.32 10.32 37.67 3.51
5901 6545 8.918202 TCTGTGAACCAAACAATCTTAATACT 57.082 30.769 0.00 0.00 0.00 2.12
5902 6546 9.349713 TCTGTGAACCAAACAATCTTAATACTT 57.650 29.630 0.00 0.00 0.00 2.24
5903 6547 9.612620 CTGTGAACCAAACAATCTTAATACTTC 57.387 33.333 0.00 0.00 0.00 3.01
5904 6548 8.573035 TGTGAACCAAACAATCTTAATACTTCC 58.427 33.333 0.00 0.00 0.00 3.46
5905 6549 8.793592 GTGAACCAAACAATCTTAATACTTCCT 58.206 33.333 0.00 0.00 0.00 3.36
5906 6550 9.010029 TGAACCAAACAATCTTAATACTTCCTC 57.990 33.333 0.00 0.00 0.00 3.71
5907 6551 7.939784 ACCAAACAATCTTAATACTTCCTCC 57.060 36.000 0.00 0.00 0.00 4.30
5908 6552 6.598064 ACCAAACAATCTTAATACTTCCTCCG 59.402 38.462 0.00 0.00 0.00 4.63
5909 6553 6.598064 CCAAACAATCTTAATACTTCCTCCGT 59.402 38.462 0.00 0.00 0.00 4.69
5910 6554 7.201617 CCAAACAATCTTAATACTTCCTCCGTC 60.202 40.741 0.00 0.00 0.00 4.79
5911 6555 6.793505 ACAATCTTAATACTTCCTCCGTCT 57.206 37.500 0.00 0.00 0.00 4.18
5912 6556 6.807789 ACAATCTTAATACTTCCTCCGTCTC 58.192 40.000 0.00 0.00 0.00 3.36
5913 6557 6.380274 ACAATCTTAATACTTCCTCCGTCTCA 59.620 38.462 0.00 0.00 0.00 3.27
5914 6558 7.093465 ACAATCTTAATACTTCCTCCGTCTCAA 60.093 37.037 0.00 0.00 0.00 3.02
5915 6559 6.845758 TCTTAATACTTCCTCCGTCTCAAA 57.154 37.500 0.00 0.00 0.00 2.69
5916 6560 7.235935 TCTTAATACTTCCTCCGTCTCAAAA 57.764 36.000 0.00 0.00 0.00 2.44
5917 6561 7.848128 TCTTAATACTTCCTCCGTCTCAAAAT 58.152 34.615 0.00 0.00 0.00 1.82
5918 6562 8.319146 TCTTAATACTTCCTCCGTCTCAAAATT 58.681 33.333 0.00 0.00 0.00 1.82
5919 6563 6.986904 AATACTTCCTCCGTCTCAAAATTC 57.013 37.500 0.00 0.00 0.00 2.17
5920 6564 4.625607 ACTTCCTCCGTCTCAAAATTCT 57.374 40.909 0.00 0.00 0.00 2.40
5921 6565 4.974399 ACTTCCTCCGTCTCAAAATTCTT 58.026 39.130 0.00 0.00 0.00 2.52
5922 6566 4.757149 ACTTCCTCCGTCTCAAAATTCTTG 59.243 41.667 0.00 0.00 0.00 3.02
5923 6567 4.351874 TCCTCCGTCTCAAAATTCTTGT 57.648 40.909 0.00 0.00 0.00 3.16
5924 6568 4.315803 TCCTCCGTCTCAAAATTCTTGTC 58.684 43.478 0.00 0.00 0.00 3.18
5925 6569 4.040461 TCCTCCGTCTCAAAATTCTTGTCT 59.960 41.667 0.00 0.00 0.00 3.41
5926 6570 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
5927 6571 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
5928 6572 6.426937 CCTCCGTCTCAAAATTCTTGTCTTAA 59.573 38.462 0.00 0.00 0.00 1.85
5929 6573 7.041372 CCTCCGTCTCAAAATTCTTGTCTTAAA 60.041 37.037 0.00 0.00 0.00 1.52
5930 6574 8.391075 TCCGTCTCAAAATTCTTGTCTTAAAT 57.609 30.769 0.00 0.00 0.00 1.40
5931 6575 8.846211 TCCGTCTCAAAATTCTTGTCTTAAATT 58.154 29.630 0.00 0.00 0.00 1.82
5932 6576 9.463443 CCGTCTCAAAATTCTTGTCTTAAATTT 57.537 29.630 0.00 0.00 34.86 1.82
5967 6611 8.320451 CGGAAGTATCTAGTTACGTTTTAGTG 57.680 38.462 0.00 0.00 37.98 2.74
5968 6612 7.965107 CGGAAGTATCTAGTTACGTTTTAGTGT 59.035 37.037 0.00 0.00 37.98 3.55
5969 6613 9.631452 GGAAGTATCTAGTTACGTTTTAGTGTT 57.369 33.333 0.00 0.00 0.00 3.32
5979 6623 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
5980 6624 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
5981 6625 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
5982 6626 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
5983 6627 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
5984 6628 9.241317 CGTTTTAGTGTTAGATACATCCGTATT 57.759 33.333 0.00 0.00 38.48 1.89
5990 6634 9.128404 AGTGTTAGATACATCCGTATTTAGACA 57.872 33.333 0.00 0.00 38.48 3.41
5991 6635 9.740239 GTGTTAGATACATCCGTATTTAGACAA 57.260 33.333 0.00 0.00 38.48 3.18
6000 6644 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
6001 6645 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
6003 6647 9.932207 TCCGTATTTAGACAAATCTAAGACAAA 57.068 29.630 9.81 0.00 45.93 2.83
6012 6656 9.546428 AGACAAATCTAAGACAAAAATTTTGGG 57.454 29.630 20.79 5.88 31.46 4.12
6013 6657 9.541143 GACAAATCTAAGACAAAAATTTTGGGA 57.459 29.630 20.79 11.34 0.00 4.37
6014 6658 9.325198 ACAAATCTAAGACAAAAATTTTGGGAC 57.675 29.630 20.79 12.19 0.00 4.46
6015 6659 8.487176 CAAATCTAAGACAAAAATTTTGGGACG 58.513 33.333 20.79 6.95 0.00 4.79
6016 6660 6.079424 TCTAAGACAAAAATTTTGGGACGG 57.921 37.500 20.79 9.23 0.00 4.79
6017 6661 5.828859 TCTAAGACAAAAATTTTGGGACGGA 59.171 36.000 20.79 11.04 0.00 4.69
6018 6662 4.584327 AGACAAAAATTTTGGGACGGAG 57.416 40.909 20.79 0.00 0.00 4.63
6019 6663 3.320826 AGACAAAAATTTTGGGACGGAGG 59.679 43.478 20.79 0.00 0.00 4.30
6020 6664 2.367241 ACAAAAATTTTGGGACGGAGGG 59.633 45.455 20.79 0.00 0.00 4.30
6021 6665 2.630580 CAAAAATTTTGGGACGGAGGGA 59.369 45.455 10.41 0.00 0.00 4.20
6022 6666 2.215942 AAATTTTGGGACGGAGGGAG 57.784 50.000 0.00 0.00 0.00 4.30
6023 6667 1.073098 AATTTTGGGACGGAGGGAGT 58.927 50.000 0.00 0.00 0.00 3.85
6024 6668 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6025 6669 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
6037 6681 5.544176 ACGGAGGGAGTATGATTTATGTGAT 59.456 40.000 0.00 0.00 0.00 3.06
6135 6779 9.796180 TTCCCTTTTTAGTAGCACATTTTACTA 57.204 29.630 0.00 0.00 32.64 1.82
6145 6789 9.245962 AGTAGCACATTTTACTACATACGAATC 57.754 33.333 0.00 0.00 38.98 2.52
6146 6790 9.027129 GTAGCACATTTTACTACATACGAATCA 57.973 33.333 0.00 0.00 36.97 2.57
6149 6795 8.269424 GCACATTTTACTACATACGAATCAGAG 58.731 37.037 0.00 0.00 0.00 3.35
6162 6808 1.336632 ATCAGAGCTGAGGGGTGAGC 61.337 60.000 6.34 0.00 43.61 4.26
6197 6843 6.315891 CACCAAAACCAACAAAATCAACTGAT 59.684 34.615 0.00 0.00 36.07 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.246737 GCAGGAACCAAGGGAAGCAG 61.247 60.000 0.00 0.00 0.00 4.24
37 38 2.687566 GAGGAGAGCCCCGGGAAA 60.688 66.667 26.32 0.00 34.66 3.13
64 65 0.390998 GCTCACCTGACCTTGCTCTC 60.391 60.000 0.00 0.00 0.00 3.20
67 68 1.676384 GAGCTCACCTGACCTTGCT 59.324 57.895 9.40 0.00 0.00 3.91
75 76 1.680651 AGGAGGACGAGCTCACCTG 60.681 63.158 27.10 9.18 33.89 4.00
78 79 2.183046 GCAGGAGGACGAGCTCAC 59.817 66.667 15.40 6.95 0.00 3.51
80 81 1.965754 ATTGGCAGGAGGACGAGCTC 61.966 60.000 2.73 2.73 0.00 4.09
81 82 1.992277 ATTGGCAGGAGGACGAGCT 60.992 57.895 0.00 0.00 0.00 4.09
82 83 1.817099 CATTGGCAGGAGGACGAGC 60.817 63.158 0.00 0.00 0.00 5.03
84 85 2.268920 GCATTGGCAGGAGGACGA 59.731 61.111 0.00 0.00 40.72 4.20
85 86 2.825836 GGCATTGGCAGGAGGACG 60.826 66.667 5.17 0.00 43.71 4.79
86 87 0.685458 ATTGGCATTGGCAGGAGGAC 60.685 55.000 13.02 0.00 43.71 3.85
87 88 0.685131 CATTGGCATTGGCAGGAGGA 60.685 55.000 13.02 0.00 43.71 3.71
88 89 1.820581 CATTGGCATTGGCAGGAGG 59.179 57.895 13.02 0.00 43.71 4.30
89 90 1.143183 GCATTGGCATTGGCAGGAG 59.857 57.895 13.02 8.34 43.71 3.69
90 91 2.360767 GGCATTGGCATTGGCAGGA 61.361 57.895 25.25 0.00 43.71 3.86
91 92 2.188469 GGCATTGGCATTGGCAGG 59.812 61.111 25.25 10.67 43.71 4.85
92 93 2.982960 TGGCATTGGCATTGGCAG 59.017 55.556 27.90 4.16 43.77 4.85
93 94 0.393132 CATTGGCATTGGCATTGGCA 60.393 50.000 27.90 27.90 46.51 4.92
94 95 1.098712 CCATTGGCATTGGCATTGGC 61.099 55.000 29.63 23.97 46.65 4.52
95 96 3.088259 CCATTGGCATTGGCATTGG 57.912 52.632 28.67 28.67 46.99 3.16
96 97 1.208535 AGTCCATTGGCATTGGCATTG 59.791 47.619 20.87 21.61 43.71 2.82
97 98 1.575419 AGTCCATTGGCATTGGCATT 58.425 45.000 20.87 7.76 43.71 3.56
98 99 1.483415 GAAGTCCATTGGCATTGGCAT 59.517 47.619 20.87 10.54 43.71 4.40
99 100 0.896923 GAAGTCCATTGGCATTGGCA 59.103 50.000 20.87 9.11 43.71 4.92
100 101 1.188863 AGAAGTCCATTGGCATTGGC 58.811 50.000 20.87 16.01 40.13 4.52
101 102 3.094572 AGAAGAAGTCCATTGGCATTGG 58.905 45.455 19.88 19.88 35.45 3.16
102 103 4.796038 AAGAAGAAGTCCATTGGCATTG 57.204 40.909 0.00 2.43 0.00 2.82
103 104 5.082425 AGAAAGAAGAAGTCCATTGGCATT 58.918 37.500 0.00 0.00 0.00 3.56
106 107 4.764308 AGAAGAAAGAAGAAGTCCATTGGC 59.236 41.667 0.00 0.00 0.00 4.52
115 116 1.795286 ACGCGCAGAAGAAAGAAGAAG 59.205 47.619 5.73 0.00 0.00 2.85
133 134 0.179116 ACAGAGCATAGCAGAGCACG 60.179 55.000 0.00 0.00 0.00 5.34
170 171 1.268079 GACAGCAAAACAGAGGAAGCC 59.732 52.381 0.00 0.00 0.00 4.35
173 174 6.899393 ATTATTGACAGCAAAACAGAGGAA 57.101 33.333 0.00 0.00 37.59 3.36
342 371 0.697658 TCCATGCATCCACTTGGTGA 59.302 50.000 0.00 0.00 36.49 4.02
359 394 1.483827 TCACCAGATCTGACAGCATCC 59.516 52.381 24.62 0.00 0.00 3.51
364 399 2.233186 TGAAGCTCACCAGATCTGACAG 59.767 50.000 24.62 15.97 0.00 3.51
375 410 0.667792 GACACGGACTGAAGCTCACC 60.668 60.000 0.00 0.00 0.00 4.02
384 419 0.311165 AGACTTGTCGACACGGACTG 59.689 55.000 23.92 10.59 37.81 3.51
385 420 0.311165 CAGACTTGTCGACACGGACT 59.689 55.000 23.92 18.77 37.81 3.85
386 421 1.276145 GCAGACTTGTCGACACGGAC 61.276 60.000 23.92 17.10 37.45 4.79
387 422 1.007734 GCAGACTTGTCGACACGGA 60.008 57.895 23.92 7.58 0.00 4.69
388 423 2.365068 CGCAGACTTGTCGACACGG 61.365 63.158 23.92 18.69 0.00 4.94
390 425 2.658707 GGCGCAGACTTGTCGACAC 61.659 63.158 19.90 7.19 33.78 3.67
391 426 2.355837 GGCGCAGACTTGTCGACA 60.356 61.111 15.76 15.76 33.78 4.35
415 474 3.058351 CGTTTCGACACCTACGCG 58.942 61.111 3.53 3.53 0.00 6.01
417 476 3.051171 GCGCGTTTCGACACCTACG 62.051 63.158 8.43 0.00 41.67 3.51
418 477 2.767697 GCGCGTTTCGACACCTAC 59.232 61.111 8.43 0.00 41.67 3.18
419 478 2.801996 CGCGCGTTTCGACACCTA 60.802 61.111 24.19 0.00 41.67 3.08
500 559 1.810959 TTCGTGTTACCGGGAAATGG 58.189 50.000 0.00 0.00 0.00 3.16
647 720 0.536460 TGGAACTTGGAACCGAAGCC 60.536 55.000 0.00 0.00 0.00 4.35
661 734 3.122971 GTAGCCGCCCGTTGGAAC 61.123 66.667 0.00 0.00 0.00 3.62
662 735 3.315949 AGTAGCCGCCCGTTGGAA 61.316 61.111 0.00 0.00 0.00 3.53
663 736 4.077184 CAGTAGCCGCCCGTTGGA 62.077 66.667 0.00 0.00 0.00 3.53
665 738 4.760047 AGCAGTAGCCGCCCGTTG 62.760 66.667 0.00 0.00 43.56 4.10
666 739 4.760047 CAGCAGTAGCCGCCCGTT 62.760 66.667 0.00 0.00 43.56 4.44
703 776 2.726832 AGTTCAAGTAGCCGACAGAC 57.273 50.000 0.00 0.00 0.00 3.51
718 791 0.599204 TGTTGTCCGGCGAGAAGTTC 60.599 55.000 9.30 0.00 0.00 3.01
735 808 1.761174 CAACAGGTAGCCCAGGTGT 59.239 57.895 0.00 0.00 30.58 4.16
750 823 3.433615 CGGATCTGAAGTGAGAAACCAAC 59.566 47.826 0.00 0.00 0.00 3.77
752 825 2.632996 ACGGATCTGAAGTGAGAAACCA 59.367 45.455 9.00 0.00 0.00 3.67
754 827 8.649973 AATTATACGGATCTGAAGTGAGAAAC 57.350 34.615 9.00 0.00 0.00 2.78
761 834 9.136952 GCGTTTATAATTATACGGATCTGAAGT 57.863 33.333 17.94 0.00 34.56 3.01
762 835 8.311822 CGCGTTTATAATTATACGGATCTGAAG 58.688 37.037 17.94 0.00 34.56 3.02
763 836 7.201376 GCGCGTTTATAATTATACGGATCTGAA 60.201 37.037 17.94 0.00 34.56 3.02
764 837 6.252015 GCGCGTTTATAATTATACGGATCTGA 59.748 38.462 17.94 0.00 34.56 3.27
765 838 6.034150 TGCGCGTTTATAATTATACGGATCTG 59.966 38.462 17.94 0.00 34.56 2.90
766 839 6.034256 GTGCGCGTTTATAATTATACGGATCT 59.966 38.462 17.94 0.00 34.56 2.75
767 840 6.173724 GTGCGCGTTTATAATTATACGGATC 58.826 40.000 17.94 5.38 34.56 3.36
768 841 5.634439 TGTGCGCGTTTATAATTATACGGAT 59.366 36.000 17.94 0.00 34.56 4.18
769 842 4.981054 TGTGCGCGTTTATAATTATACGGA 59.019 37.500 17.94 11.30 34.56 4.69
770 843 5.068256 GTGTGCGCGTTTATAATTATACGG 58.932 41.667 17.94 11.36 34.56 4.02
771 844 5.897133 AGTGTGCGCGTTTATAATTATACG 58.103 37.500 8.43 13.90 36.31 3.06
772 845 6.074195 TGGAGTGTGCGCGTTTATAATTATAC 60.074 38.462 8.43 0.00 0.00 1.47
923 999 1.980765 TCCAACAGATGAGCAGGAACT 59.019 47.619 0.00 0.00 43.88 3.01
931 1007 5.105432 TCAGTTCAGAGATCCAACAGATGAG 60.105 44.000 0.00 0.00 34.42 2.90
966 1042 3.243002 GCCTGCAGAACAAGATTATCAGC 60.243 47.826 17.39 0.07 0.00 4.26
987 1068 1.596477 CCCCATCGCTCAAGCTAGC 60.596 63.158 6.62 6.62 39.32 3.42
988 1069 1.070445 CCCCCATCGCTCAAGCTAG 59.930 63.158 0.00 0.00 39.32 3.42
989 1070 0.980754 TTCCCCCATCGCTCAAGCTA 60.981 55.000 0.00 0.00 39.32 3.32
1026 1111 3.699894 CTGTGGAGGCGGCTGAGT 61.700 66.667 19.63 0.00 0.00 3.41
1044 1129 4.147449 CCGATGCGCTCCCTGACA 62.147 66.667 9.73 0.00 0.00 3.58
1098 1183 0.391597 GGTCGAACCTGGTGAAGACA 59.608 55.000 22.35 0.00 34.73 3.41
1120 1210 1.077212 CAGTGCAGGGGAGGGAATG 60.077 63.158 0.00 0.00 0.00 2.67
1170 1260 9.640963 GGAGATCTACATACTTGCGTAATAAAT 57.359 33.333 0.00 0.00 0.00 1.40
1178 1268 3.858877 GCCAGGAGATCTACATACTTGCG 60.859 52.174 7.93 0.00 0.00 4.85
1181 1271 2.894126 CCGCCAGGAGATCTACATACTT 59.106 50.000 7.93 0.00 41.02 2.24
1190 1280 2.093537 CTAGCCACCGCCAGGAGATC 62.094 65.000 0.00 0.00 41.02 2.75
1200 1290 2.767505 ACAGTTTTCTTCTAGCCACCG 58.232 47.619 0.00 0.00 0.00 4.94
1210 1300 5.928264 GCCAGATTTATGCAACAGTTTTCTT 59.072 36.000 0.00 0.00 0.00 2.52
1212 1302 4.324402 CGCCAGATTTATGCAACAGTTTTC 59.676 41.667 0.00 0.00 0.00 2.29
1213 1303 4.236935 CGCCAGATTTATGCAACAGTTTT 58.763 39.130 0.00 0.00 0.00 2.43
1215 1305 2.819608 ACGCCAGATTTATGCAACAGTT 59.180 40.909 0.00 0.00 0.00 3.16
1217 1307 2.223340 GGACGCCAGATTTATGCAACAG 60.223 50.000 0.00 0.00 0.00 3.16
1218 1308 1.742831 GGACGCCAGATTTATGCAACA 59.257 47.619 0.00 0.00 0.00 3.33
1219 1309 1.065551 GGGACGCCAGATTTATGCAAC 59.934 52.381 0.00 0.00 0.00 4.17
1220 1310 1.388547 GGGACGCCAGATTTATGCAA 58.611 50.000 0.00 0.00 0.00 4.08
1221 1311 0.465460 GGGGACGCCAGATTTATGCA 60.465 55.000 3.14 0.00 0.00 3.96
1222 1312 0.179018 AGGGGACGCCAGATTTATGC 60.179 55.000 11.67 0.00 0.00 3.14
1223 1313 2.368875 ACTAGGGGACGCCAGATTTATG 59.631 50.000 11.67 0.00 0.00 1.90
1224 1314 2.368875 CACTAGGGGACGCCAGATTTAT 59.631 50.000 11.67 0.00 0.00 1.40
1226 1316 0.541863 CACTAGGGGACGCCAGATTT 59.458 55.000 11.67 0.00 0.00 2.17
1228 1318 2.435693 GCACTAGGGGACGCCAGAT 61.436 63.158 11.67 0.00 0.00 2.90
1229 1319 3.075005 GCACTAGGGGACGCCAGA 61.075 66.667 11.67 0.00 0.00 3.86
1230 1320 4.514577 CGCACTAGGGGACGCCAG 62.515 72.222 11.67 8.61 0.00 4.85
1234 1324 2.173669 CATTGCGCACTAGGGGACG 61.174 63.158 11.12 0.00 0.00 4.79
1235 1325 1.819632 CCATTGCGCACTAGGGGAC 60.820 63.158 11.12 0.00 0.00 4.46
1236 1326 1.344953 ATCCATTGCGCACTAGGGGA 61.345 55.000 11.12 13.39 0.00 4.81
1238 1328 1.789078 GCATCCATTGCGCACTAGGG 61.789 60.000 11.12 8.32 42.54 3.53
1239 1329 1.650912 GCATCCATTGCGCACTAGG 59.349 57.895 11.12 13.05 42.54 3.02
1258 1365 7.607991 AGGTATGTTGAGTAGGAATGAAGTTTG 59.392 37.037 0.00 0.00 0.00 2.93
1259 1366 7.607991 CAGGTATGTTGAGTAGGAATGAAGTTT 59.392 37.037 0.00 0.00 0.00 2.66
1277 1384 9.425248 AATATTTGATTGATTGACCAGGTATGT 57.575 29.630 0.00 0.00 0.00 2.29
1317 1431 9.175312 TCACTGTTCAGTATACTAGGTTTCTAG 57.825 37.037 4.74 0.00 46.38 2.43
1319 1433 8.305317 GTTCACTGTTCAGTATACTAGGTTTCT 58.695 37.037 4.74 0.00 0.00 2.52
1331 1445 5.163457 TGTCATCAGTGTTCACTGTTCAGTA 60.163 40.000 25.52 11.13 38.75 2.74
1332 1446 4.122776 GTCATCAGTGTTCACTGTTCAGT 58.877 43.478 25.52 0.00 38.75 3.41
1333 1447 4.025396 GTGTCATCAGTGTTCACTGTTCAG 60.025 45.833 25.52 16.36 38.75 3.02
1334 1448 3.871006 GTGTCATCAGTGTTCACTGTTCA 59.129 43.478 25.52 18.33 38.75 3.18
1335 1449 3.871006 TGTGTCATCAGTGTTCACTGTTC 59.129 43.478 25.52 16.68 38.75 3.18
1336 1450 3.623060 GTGTGTCATCAGTGTTCACTGTT 59.377 43.478 25.52 17.92 38.75 3.16
1337 1451 3.198068 GTGTGTCATCAGTGTTCACTGT 58.802 45.455 25.52 14.36 38.75 3.55
1338 1452 2.545526 GGTGTGTCATCAGTGTTCACTG 59.454 50.000 22.28 22.28 39.00 3.66
1339 1453 2.435805 AGGTGTGTCATCAGTGTTCACT 59.564 45.455 0.00 0.00 34.79 3.41
1340 1454 2.802816 GAGGTGTGTCATCAGTGTTCAC 59.197 50.000 0.00 0.00 34.53 3.18
1377 1491 1.063616 CAGATCTGGCAGCAATCAACG 59.936 52.381 15.38 0.00 0.00 4.10
1404 1544 1.065926 CAATCACTCTACCCAGCTGCA 60.066 52.381 8.66 0.00 0.00 4.41
1418 1558 5.124457 AGGTCAATGTGCAGAATACAATCAC 59.876 40.000 0.00 0.00 0.00 3.06
1565 1708 3.243234 TGGTTTTGACGGTGCATTTACTG 60.243 43.478 0.00 0.00 0.00 2.74
1589 1732 7.040062 TGGAATTCCATTCGAAACATTACAGTT 60.040 33.333 23.63 0.00 42.01 3.16
1639 1782 3.253188 TCTGAAGCCATTGTTTAGCACAC 59.747 43.478 0.00 0.00 33.98 3.82
1689 1832 3.004419 CGCATCGAGTAAGATCCACCTAA 59.996 47.826 0.00 0.00 0.00 2.69
1691 1834 1.338337 CGCATCGAGTAAGATCCACCT 59.662 52.381 0.00 0.00 0.00 4.00
1709 1852 7.404985 CACCATATAGCATTCAGAATTATCGC 58.595 38.462 0.00 0.00 0.00 4.58
1725 1868 4.122776 GCCGCATAAGATCCACCATATAG 58.877 47.826 0.00 0.00 0.00 1.31
1762 1905 2.983725 AAGGTTGACCAGCCTGCACC 62.984 60.000 6.17 0.00 41.43 5.01
1838 1981 1.139226 GCTTCTCTCGCTCTGCTTCG 61.139 60.000 0.00 0.00 0.00 3.79
1841 1984 4.016838 AGCTTCTCTCGCTCTGCT 57.983 55.556 0.00 0.00 30.49 4.24
1850 1993 0.177604 CGCCATCCTTGAGCTTCTCT 59.822 55.000 0.00 0.00 0.00 3.10
1967 2110 6.515832 TGTATCATATACAGAAGTGCACCAG 58.484 40.000 14.63 3.44 0.00 4.00
2088 2231 1.148027 TCAGGGACACTCAACTCCTCT 59.852 52.381 0.00 0.00 0.00 3.69
2100 2243 1.656587 ATTGCAGGTACTCAGGGACA 58.343 50.000 0.00 0.00 34.60 4.02
2118 2261 1.347707 TCCACGAGCTGTTCCTTGAAT 59.652 47.619 0.00 0.00 0.00 2.57
2177 2324 8.915057 ATCAAATTATCTGTTCAGTATCCCAG 57.085 34.615 0.00 0.00 0.00 4.45
2185 2340 8.675504 AGCAAGAGAATCAAATTATCTGTTCAG 58.324 33.333 0.00 0.00 39.71 3.02
2191 2346 9.058174 CATCAGAGCAAGAGAATCAAATTATCT 57.942 33.333 0.00 0.00 42.19 1.98
2201 2356 9.221933 GAATCAATATCATCAGAGCAAGAGAAT 57.778 33.333 0.00 0.00 0.00 2.40
2240 2427 7.637631 TTGCTGCCAACATATGAAAATAGTA 57.362 32.000 10.38 0.00 0.00 1.82
2254 2441 5.538501 ACAAAGTCCTTGTTGCTGCCAAC 62.539 47.826 0.00 2.69 46.49 3.77
2280 2467 0.392193 ATGGCTCAAAGTCCAGCTCG 60.392 55.000 0.00 0.00 35.57 5.03
2379 2566 3.328931 TCTCCTTGTCATGGAAGAGCTTT 59.671 43.478 8.69 0.00 32.61 3.51
2415 2602 2.261671 GCGCGGAGGAAGTTGAGA 59.738 61.111 8.83 0.00 0.00 3.27
2457 2644 4.558226 TGTATGCAGGATGAAAGACTGT 57.442 40.909 0.00 0.00 39.69 3.55
2460 2647 5.824904 ACAATGTATGCAGGATGAAAGAC 57.175 39.130 0.00 0.00 39.69 3.01
2536 2863 3.776969 AGCATCATAGTCTGGAGGAAACA 59.223 43.478 0.00 0.00 0.00 2.83
2696 3195 8.440771 AGGCTACATTAACTGGCTAATAATTCT 58.559 33.333 0.00 0.00 33.53 2.40
2713 3212 6.721318 TGAAGAAAATACTCCAGGCTACATT 58.279 36.000 0.00 0.00 0.00 2.71
2717 3216 6.352222 CCTTCTGAAGAAAATACTCCAGGCTA 60.352 42.308 18.68 0.00 33.07 3.93
2758 3259 6.452494 TGTCCAATCAAAAGAACCGTTAAA 57.548 33.333 0.00 0.00 0.00 1.52
3010 3511 8.436778 ACCATGTATAAACTATGCAGGATGTTA 58.563 33.333 0.00 0.00 35.11 2.41
3069 3570 3.011708 ACAACCTTTGGGGAATCATAGCT 59.988 43.478 0.00 0.00 38.76 3.32
3185 3714 3.784701 ATCATACCAGACGTCACACTC 57.215 47.619 19.50 0.00 0.00 3.51
3194 3723 9.916397 CGACAAGTTTTAATTATCATACCAGAC 57.084 33.333 0.00 0.00 0.00 3.51
3258 3797 1.403814 CATCAGGGAGAAGCCTCGTA 58.596 55.000 0.00 0.00 40.33 3.43
3261 3800 0.254178 TTGCATCAGGGAGAAGCCTC 59.746 55.000 0.00 0.00 40.14 4.70
3321 3860 0.250901 GGATGTGGGTGTGCTCTGTT 60.251 55.000 0.00 0.00 0.00 3.16
3478 4017 3.953612 TGGGGCAGAGTTAGCAAAATATG 59.046 43.478 0.00 0.00 0.00 1.78
3624 4165 6.893583 AGAAGTGGCTAGAATTCATACATGT 58.106 36.000 8.44 2.69 0.00 3.21
3643 4184 2.923121 TGCTTGCAGAAACAGAGAAGT 58.077 42.857 0.00 0.00 0.00 3.01
3647 4188 6.127925 TGGTAAATATGCTTGCAGAAACAGAG 60.128 38.462 0.87 0.00 0.00 3.35
3654 4195 4.331108 TGTGTGGTAAATATGCTTGCAGA 58.669 39.130 0.87 0.00 0.00 4.26
3655 4196 4.700268 TGTGTGGTAAATATGCTTGCAG 57.300 40.909 0.87 0.00 0.00 4.41
3658 4199 7.709947 AGATCAATGTGTGGTAAATATGCTTG 58.290 34.615 0.00 0.00 0.00 4.01
3699 4240 1.730501 ACACTGCAGACCAATGATCG 58.269 50.000 23.35 0.00 0.00 3.69
3704 4245 3.057315 GCAATTGTACACTGCAGACCAAT 60.057 43.478 23.35 17.60 36.09 3.16
3745 4286 3.077088 AGAGGTCAGAGTTGGGGTACTTA 59.923 47.826 0.00 0.00 0.00 2.24
3888 4429 5.692654 AGAGAAAGCTCAGTCGTAAAGAAAC 59.307 40.000 0.00 0.00 43.81 2.78
3898 4439 6.158598 GGATATCATCAGAGAAAGCTCAGTC 58.841 44.000 4.83 0.00 43.81 3.51
3939 4480 1.338973 CCATGCAAAGACAACTGCTGT 59.661 47.619 0.00 0.00 42.61 4.40
3940 4481 1.933500 GCCATGCAAAGACAACTGCTG 60.934 52.381 0.00 0.00 39.38 4.41
3942 4483 0.668401 GGCCATGCAAAGACAACTGC 60.668 55.000 0.00 0.00 39.09 4.40
3944 4485 2.584835 TAGGCCATGCAAAGACAACT 57.415 45.000 5.01 0.00 0.00 3.16
3945 4486 3.514645 CATTAGGCCATGCAAAGACAAC 58.485 45.455 5.01 0.00 0.00 3.32
3946 4487 2.496871 CCATTAGGCCATGCAAAGACAA 59.503 45.455 5.01 0.00 0.00 3.18
3971 4512 1.956477 GTCCTTGCTGAAAAGGCAGAA 59.044 47.619 0.00 0.00 45.49 3.02
3994 4535 2.292569 GTGAGACTCGTACTGACCAACA 59.707 50.000 0.00 0.00 0.00 3.33
4201 4742 2.135139 TGCAGTTCTTACTTGTGCTCG 58.865 47.619 0.00 0.00 30.26 5.03
4220 4761 3.751175 TCAGGCGGTAAGAAACAATTCTG 59.249 43.478 0.00 0.00 45.19 3.02
4239 4780 0.390866 ATCAGACCGTTGCAGCTCAG 60.391 55.000 0.00 0.00 0.00 3.35
4273 4814 5.658634 TGCAGAAGGTATTCTAGTCAGATGT 59.341 40.000 0.00 0.00 44.15 3.06
4315 4856 3.012518 AGAAGATGATTGGCTTGTTCCG 58.987 45.455 0.00 0.00 0.00 4.30
4338 4879 0.390603 CACGGTCCAAACGAGCCATA 60.391 55.000 0.00 0.00 35.44 2.74
4359 4900 4.407621 TCAACCAGACCAGTCAAGTTCTTA 59.592 41.667 0.00 0.00 0.00 2.10
4626 5167 4.150451 GCAAGAATGTGGTTTATGCAACAC 59.850 41.667 0.00 0.00 37.07 3.32
4647 5188 7.367285 GTGAGAACACATATTTTTACAAGGCA 58.633 34.615 0.00 0.00 45.32 4.75
4678 5219 2.049802 CAGGCTGCACGCAAAAGG 60.050 61.111 0.00 0.00 41.67 3.11
4709 5250 2.673368 CTCGATGACAGTAAGCCCAAAC 59.327 50.000 0.00 0.00 0.00 2.93
4757 5298 0.378257 GACCACCATATGCAGTTGCG 59.622 55.000 0.00 0.00 45.83 4.85
4799 5340 1.078709 CAATGTGGTAGCCAGACACG 58.921 55.000 0.00 0.00 37.92 4.49
4805 5346 1.595311 AGGGATCAATGTGGTAGCCA 58.405 50.000 0.00 0.00 0.00 4.75
4853 5394 3.003793 GGCACTTCTCAAAGAACTCAACC 59.996 47.826 0.00 0.00 36.30 3.77
4969 5510 6.173339 TCAGCAAACTAGTTATCCTTGGAAG 58.827 40.000 8.92 0.00 0.00 3.46
4973 5514 6.402222 AGTCTCAGCAAACTAGTTATCCTTG 58.598 40.000 8.92 4.18 0.00 3.61
4974 5515 6.613153 AGTCTCAGCAAACTAGTTATCCTT 57.387 37.500 8.92 0.00 0.00 3.36
5004 5545 8.208903 GCTTCCAGGTGTACCTAAATAAGAATA 58.791 37.037 2.72 0.00 46.65 1.75
5014 5563 4.422984 AGTAAAGCTTCCAGGTGTACCTA 58.577 43.478 0.00 0.00 46.65 3.08
5017 5566 4.021368 TCAGAGTAAAGCTTCCAGGTGTAC 60.021 45.833 0.00 0.00 36.83 2.90
5095 5644 2.809601 CGGGTCTCACGCCTTTCG 60.810 66.667 0.00 0.00 45.38 3.46
5104 5653 4.753662 AGGTAGCGGCGGGTCTCA 62.754 66.667 9.78 0.00 0.00 3.27
5275 5824 0.448197 GCAGCGCCTAGGAAGAAAAC 59.552 55.000 14.75 0.00 0.00 2.43
5288 5837 5.513141 CCTTAAATCTTAAAAAGAGCAGCGC 59.487 40.000 0.00 0.00 41.61 5.92
5308 5858 1.617322 AGCACACTGACTCGACCTTA 58.383 50.000 0.00 0.00 0.00 2.69
5329 5879 5.221661 ACTCACTCCCACTACTAAACCAAAG 60.222 44.000 0.00 0.00 0.00 2.77
5356 5913 3.117888 ACACACCACATTTTCCTCTGTCT 60.118 43.478 0.00 0.00 0.00 3.41
5494 6051 1.024271 GCTCAGTGGCAGTGACAAAA 58.976 50.000 20.75 0.64 0.00 2.44
5506 6063 9.286170 TGTAGTATTAGGTAATAGAGCTCAGTG 57.714 37.037 17.77 0.00 37.09 3.66
5507 6064 9.863650 TTGTAGTATTAGGTAATAGAGCTCAGT 57.136 33.333 17.77 3.93 37.09 3.41
5540 6097 6.672657 AGCTCTTTATCCCACCTTCTAGTAAA 59.327 38.462 0.00 0.00 0.00 2.01
5633 6264 4.529897 TCATTGCCAATCACATAGAAGCT 58.470 39.130 0.00 0.00 0.00 3.74
5635 6266 6.262496 AGACATCATTGCCAATCACATAGAAG 59.738 38.462 0.00 0.00 0.00 2.85
5684 6315 7.905604 TGAACTACAGTTTCATATGTGAAGG 57.094 36.000 4.99 2.72 44.62 3.46
5699 6343 1.880027 GGCCACCAGTTTGAACTACAG 59.120 52.381 0.00 0.00 37.08 2.74
5728 6372 6.961554 CAGAACATAATTTTACCAGCGAACTC 59.038 38.462 0.00 0.00 0.00 3.01
5747 6391 0.468226 AGGGTGCGAGTTTCAGAACA 59.532 50.000 0.00 0.00 38.26 3.18
5754 6398 3.097614 ACTACATAGAGGGTGCGAGTTT 58.902 45.455 0.00 0.00 0.00 2.66
5773 6417 4.646945 TGTTCTGACTTCTGAGTTCTGACT 59.353 41.667 0.00 0.00 35.88 3.41
5774 6418 4.938080 TGTTCTGACTTCTGAGTTCTGAC 58.062 43.478 0.00 0.00 35.88 3.51
5775 6419 5.598416 TTGTTCTGACTTCTGAGTTCTGA 57.402 39.130 0.00 0.00 35.88 3.27
5776 6420 6.857777 AATTGTTCTGACTTCTGAGTTCTG 57.142 37.500 0.00 0.00 35.88 3.02
5777 6421 7.731054 ACTAATTGTTCTGACTTCTGAGTTCT 58.269 34.615 0.00 0.00 35.88 3.01
5778 6422 7.148885 CGACTAATTGTTCTGACTTCTGAGTTC 60.149 40.741 0.00 0.00 35.88 3.01
5779 6423 6.642950 CGACTAATTGTTCTGACTTCTGAGTT 59.357 38.462 0.00 0.00 35.88 3.01
5780 6424 6.016192 TCGACTAATTGTTCTGACTTCTGAGT 60.016 38.462 0.00 0.00 39.32 3.41
5781 6425 6.382608 TCGACTAATTGTTCTGACTTCTGAG 58.617 40.000 0.00 0.00 0.00 3.35
5782 6426 6.327279 TCGACTAATTGTTCTGACTTCTGA 57.673 37.500 0.00 0.00 0.00 3.27
5783 6427 6.400515 GCTTCGACTAATTGTTCTGACTTCTG 60.401 42.308 0.00 0.00 0.00 3.02
5784 6428 5.635700 GCTTCGACTAATTGTTCTGACTTCT 59.364 40.000 0.00 0.00 0.00 2.85
5785 6429 5.635700 AGCTTCGACTAATTGTTCTGACTTC 59.364 40.000 0.00 0.00 0.00 3.01
5786 6430 5.542779 AGCTTCGACTAATTGTTCTGACTT 58.457 37.500 0.00 0.00 0.00 3.01
5791 6435 6.758886 CCTATTGAGCTTCGACTAATTGTTCT 59.241 38.462 0.00 0.00 0.00 3.01
5849 6493 7.009179 TCTCTCAATGGGCTATAACCAATAG 57.991 40.000 0.36 0.00 42.17 1.73
5864 6508 3.260740 GGTTCACAGAGCTCTCTCAATG 58.739 50.000 14.96 4.92 41.81 2.82
5901 6545 4.714632 ACAAGAATTTTGAGACGGAGGAA 58.285 39.130 7.18 0.00 0.00 3.36
5902 6546 4.040461 AGACAAGAATTTTGAGACGGAGGA 59.960 41.667 7.18 0.00 0.00 3.71
5903 6547 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
5904 6548 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
5905 6549 7.795482 TTTAAGACAAGAATTTTGAGACGGA 57.205 32.000 7.18 0.00 0.00 4.69
5906 6550 9.463443 AAATTTAAGACAAGAATTTTGAGACGG 57.537 29.630 0.00 0.00 31.00 4.79
5937 6581 9.860898 AAAACGTAACTAGATACTTCCGTATTT 57.139 29.630 8.36 3.43 36.49 1.40
5940 6584 9.162764 ACTAAAACGTAACTAGATACTTCCGTA 57.837 33.333 8.36 0.00 0.00 4.02
5941 6585 7.965107 CACTAAAACGTAACTAGATACTTCCGT 59.035 37.037 8.36 0.00 0.00 4.69
5942 6586 7.965107 ACACTAAAACGTAACTAGATACTTCCG 59.035 37.037 8.36 0.00 0.00 4.30
5943 6587 9.631452 AACACTAAAACGTAACTAGATACTTCC 57.369 33.333 8.36 0.00 0.00 3.46
5953 6597 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
5954 6598 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
5955 6599 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
5956 6600 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
5957 6601 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
5958 6602 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
5964 6608 9.128404 TGTCTAAATACGGATGTATCTAACACT 57.872 33.333 0.00 0.00 42.09 3.55
5965 6609 9.740239 TTGTCTAAATACGGATGTATCTAACAC 57.260 33.333 0.00 0.00 42.09 3.32
5974 6618 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
5975 6619 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
5977 6621 9.932207 TTTGTCTTAGATTTGTCTAAATACGGA 57.068 29.630 0.26 0.00 36.66 4.69
5986 6630 9.546428 CCCAAAATTTTTGTCTTAGATTTGTCT 57.454 29.630 18.05 0.00 0.00 3.41
5987 6631 9.541143 TCCCAAAATTTTTGTCTTAGATTTGTC 57.459 29.630 18.05 0.00 0.00 3.18
5988 6632 9.325198 GTCCCAAAATTTTTGTCTTAGATTTGT 57.675 29.630 18.05 0.00 0.00 2.83
5989 6633 8.487176 CGTCCCAAAATTTTTGTCTTAGATTTG 58.513 33.333 18.05 2.04 0.00 2.32
5990 6634 7.655732 CCGTCCCAAAATTTTTGTCTTAGATTT 59.344 33.333 18.05 0.00 0.00 2.17
5991 6635 7.014808 TCCGTCCCAAAATTTTTGTCTTAGATT 59.985 33.333 18.05 0.00 0.00 2.40
5992 6636 6.492087 TCCGTCCCAAAATTTTTGTCTTAGAT 59.508 34.615 18.05 0.00 0.00 1.98
5993 6637 5.828859 TCCGTCCCAAAATTTTTGTCTTAGA 59.171 36.000 18.05 8.44 0.00 2.10
5994 6638 6.079424 TCCGTCCCAAAATTTTTGTCTTAG 57.921 37.500 18.05 5.02 0.00 2.18
5995 6639 5.010213 CCTCCGTCCCAAAATTTTTGTCTTA 59.990 40.000 18.05 1.26 0.00 2.10
5996 6640 4.202212 CCTCCGTCCCAAAATTTTTGTCTT 60.202 41.667 18.05 0.00 0.00 3.01
5997 6641 3.320826 CCTCCGTCCCAAAATTTTTGTCT 59.679 43.478 18.05 0.00 0.00 3.41
5998 6642 3.554129 CCCTCCGTCCCAAAATTTTTGTC 60.554 47.826 18.05 9.04 0.00 3.18
5999 6643 2.367241 CCCTCCGTCCCAAAATTTTTGT 59.633 45.455 18.05 0.00 0.00 2.83
6000 6644 2.630580 TCCCTCCGTCCCAAAATTTTTG 59.369 45.455 13.76 13.76 0.00 2.44
6001 6645 2.897326 CTCCCTCCGTCCCAAAATTTTT 59.103 45.455 0.00 0.00 0.00 1.94
6002 6646 2.158370 ACTCCCTCCGTCCCAAAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
6003 6647 1.427753 ACTCCCTCCGTCCCAAAATTT 59.572 47.619 0.00 0.00 0.00 1.82
6004 6648 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6005 6649 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6006 6650 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
6007 6651 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
6008 6652 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
6009 6653 0.561184 ATCATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
6010 6654 1.718280 AATCATACTCCCTCCGTCCC 58.282 55.000 0.00 0.00 0.00 4.46
6011 6655 4.283722 ACATAAATCATACTCCCTCCGTCC 59.716 45.833 0.00 0.00 0.00 4.79
6012 6656 5.010719 TCACATAAATCATACTCCCTCCGTC 59.989 44.000 0.00 0.00 0.00 4.79
6013 6657 4.899457 TCACATAAATCATACTCCCTCCGT 59.101 41.667 0.00 0.00 0.00 4.69
6014 6658 5.468540 TCACATAAATCATACTCCCTCCG 57.531 43.478 0.00 0.00 0.00 4.63
6015 6659 7.009179 TGATCACATAAATCATACTCCCTCC 57.991 40.000 0.00 0.00 0.00 4.30
6016 6660 8.908786 TTTGATCACATAAATCATACTCCCTC 57.091 34.615 0.00 0.00 33.36 4.30
6017 6661 9.347240 CTTTTGATCACATAAATCATACTCCCT 57.653 33.333 0.00 0.00 33.36 4.20
6018 6662 9.342308 TCTTTTGATCACATAAATCATACTCCC 57.658 33.333 0.00 0.00 33.36 4.30
6135 6779 2.363680 CCCTCAGCTCTGATTCGTATGT 59.636 50.000 0.00 0.00 39.13 2.29
6142 6786 1.202330 CTCACCCCTCAGCTCTGATT 58.798 55.000 0.00 0.00 39.13 2.57
6145 6789 2.583520 GCTCACCCCTCAGCTCTG 59.416 66.667 0.00 0.00 32.48 3.35
6146 6790 3.073735 CGCTCACCCCTCAGCTCT 61.074 66.667 0.00 0.00 33.09 4.09
6149 6795 2.435059 GAACGCTCACCCCTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
6162 6808 1.403679 TGGTTTTGGTGCTTCAGAACG 59.596 47.619 7.00 0.00 33.99 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.