Multiple sequence alignment - TraesCS7A01G040800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G040800 chr7A 100.000 5654 0 0 1 5654 18992714 18998367 0.000000e+00 10442
1 TraesCS7A01G040800 chr7A 94.318 176 7 2 174 347 711669414 711669240 3.360000e-67 267
2 TraesCS7A01G040800 chr7A 88.202 178 17 3 176 350 23794155 23793979 5.740000e-50 209
3 TraesCS7A01G040800 chr7D 94.713 4653 128 27 348 4980 18586016 18590570 0.000000e+00 7121
4 TraesCS7A01G040800 chr7D 92.722 1690 90 8 1722 3405 18629721 18631383 0.000000e+00 2409
5 TraesCS7A01G040800 chr7D 89.004 1355 93 28 348 1680 18628399 18629719 0.000000e+00 1626
6 TraesCS7A01G040800 chr7D 85.484 1364 152 22 3539 4858 18631396 18632757 0.000000e+00 1380
7 TraesCS7A01G040800 chr7D 85.377 677 72 14 348 1011 18610318 18610980 0.000000e+00 676
8 TraesCS7A01G040800 chr7D 92.342 222 17 0 1005 1226 18625664 18625885 3.290000e-82 316
9 TraesCS7A01G040800 chr7D 91.919 198 15 1 5456 5652 18590813 18591010 5.580000e-70 276
10 TraesCS7A01G040800 chr7D 92.500 160 11 1 3 162 18628234 18628392 1.580000e-55 228
11 TraesCS7A01G040800 chr4A 85.500 4593 460 92 348 4873 714195626 714191173 0.000000e+00 4602
12 TraesCS7A01G040800 chr4A 90.533 169 14 2 9 177 714195784 714195618 7.370000e-54 222
13 TraesCS7A01G040800 chr4A 93.043 115 1 1 5339 5453 738935472 738935579 1.630000e-35 161
14 TraesCS7A01G040800 chr1A 80.599 701 121 8 3128 3816 12770968 12770271 1.400000e-145 527
15 TraesCS7A01G040800 chr1A 75.403 1118 203 42 4145 5229 12768546 12767468 5.130000e-130 475
16 TraesCS7A01G040800 chr1A 73.199 1138 215 63 4144 5237 12769943 12768852 4.220000e-86 329
17 TraesCS7A01G040800 chr1A 86.391 169 20 2 177 343 534434719 534434552 1.250000e-41 182
18 TraesCS7A01G040800 chr1A 82.212 208 37 0 3128 3335 12834883 12834676 4.500000e-41 180
19 TraesCS7A01G040800 chr1A 74.860 358 79 9 3519 3870 12405603 12405251 9.810000e-33 152
20 TraesCS7A01G040800 chrUn 79.129 666 131 6 4097 4755 305995343 305994679 2.400000e-123 453
21 TraesCS7A01G040800 chr1B 79.129 666 131 6 4097 4755 15896364 15895700 2.400000e-123 453
22 TraesCS7A01G040800 chr1B 75.316 713 148 15 3128 3820 15659594 15660298 3.290000e-82 316
23 TraesCS7A01G040800 chr1B 89.256 121 3 6 5334 5453 456274535 456274424 5.900000e-30 143
24 TraesCS7A01G040800 chr6D 73.136 711 156 26 3132 3821 27100891 27101587 7.370000e-54 222
25 TraesCS7A01G040800 chr4D 89.503 181 12 5 177 352 64349619 64349441 7.370000e-54 222
26 TraesCS7A01G040800 chr4D 92.241 116 1 4 5337 5452 39210913 39211020 2.110000e-34 158
27 TraesCS7A01G040800 chr2B 89.412 170 15 2 179 346 99268112 99268280 1.600000e-50 211
28 TraesCS7A01G040800 chr2B 88.623 167 16 2 179 343 387702058 387702223 3.450000e-47 200
29 TraesCS7A01G040800 chr3D 88.889 171 16 2 175 343 606630687 606630856 2.060000e-49 207
30 TraesCS7A01G040800 chr1D 86.243 189 17 4 173 354 6789456 6789270 4.470000e-46 196
31 TraesCS7A01G040800 chr4B 86.550 171 20 2 180 347 527646925 527646755 9.670000e-43 185
32 TraesCS7A01G040800 chr3B 93.103 116 1 1 5338 5453 251325894 251325786 4.530000e-36 163
33 TraesCS7A01G040800 chr3A 91.200 125 4 1 5339 5463 608386810 608386693 4.530000e-36 163
34 TraesCS7A01G040800 chr3A 93.043 115 1 1 5339 5453 683742425 683742532 1.630000e-35 161
35 TraesCS7A01G040800 chr3A 92.982 114 1 1 5339 5452 740109924 740110030 5.860000e-35 159
36 TraesCS7A01G040800 chr3A 92.105 114 2 1 5339 5452 368681561 368681667 2.730000e-33 154
37 TraesCS7A01G040800 chr6A 93.043 115 1 1 5338 5452 8193072 8192965 1.630000e-35 161
38 TraesCS7A01G040800 chr6A 92.105 114 1 3 5340 5453 524334309 524334414 2.730000e-33 154
39 TraesCS7A01G040800 chr2A 93.043 115 1 1 5338 5452 748957556 748957449 1.630000e-35 161
40 TraesCS7A01G040800 chr5D 90.244 123 4 2 5338 5460 382294702 382294588 2.730000e-33 154
41 TraesCS7A01G040800 chr6B 90.517 116 4 1 5338 5453 56042127 56042019 4.560000e-31 147
42 TraesCS7A01G040800 chr6B 88.793 116 2 3 5338 5453 542567578 542567682 1.280000e-26 132
43 TraesCS7A01G040800 chr5A 86.260 131 8 3 5331 5458 308093221 308093344 3.550000e-27 134
44 TraesCS7A01G040800 chr5A 86.260 131 8 3 5331 5458 308179765 308179888 3.550000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G040800 chr7A 18992714 18998367 5653 False 10442.000000 10442 100.000000 1 5654 1 chr7A.!!$F1 5653
1 TraesCS7A01G040800 chr7D 18586016 18591010 4994 False 3698.500000 7121 93.316000 348 5652 2 chr7D.!!$F2 5304
2 TraesCS7A01G040800 chr7D 18625664 18632757 7093 False 1191.800000 2409 90.410400 3 4858 5 chr7D.!!$F3 4855
3 TraesCS7A01G040800 chr7D 18610318 18610980 662 False 676.000000 676 85.377000 348 1011 1 chr7D.!!$F1 663
4 TraesCS7A01G040800 chr4A 714191173 714195784 4611 True 2412.000000 4602 88.016500 9 4873 2 chr4A.!!$R1 4864
5 TraesCS7A01G040800 chr1A 12767468 12770968 3500 True 443.666667 527 76.400333 3128 5237 3 chr1A.!!$R4 2109
6 TraesCS7A01G040800 chrUn 305994679 305995343 664 True 453.000000 453 79.129000 4097 4755 1 chrUn.!!$R1 658
7 TraesCS7A01G040800 chr1B 15895700 15896364 664 True 453.000000 453 79.129000 4097 4755 1 chr1B.!!$R1 658
8 TraesCS7A01G040800 chr1B 15659594 15660298 704 False 316.000000 316 75.316000 3128 3820 1 chr1B.!!$F1 692
9 TraesCS7A01G040800 chr6D 27100891 27101587 696 False 222.000000 222 73.136000 3132 3821 1 chr6D.!!$F1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 2861 0.106894 GCCTTAGCGCAGGACCTATT 59.893 55.000 17.49 0.00 35.71 1.73 F
602 3175 1.269448 GTGTCCGTACTTTCGTACCCA 59.731 52.381 0.00 0.00 42.38 4.51 F
1634 4276 2.487762 TCCAACAAAATCATCGGCACTC 59.512 45.455 0.00 0.00 0.00 3.51 F
2519 5171 3.018856 GCATCAACCATCATCCTTGTCA 58.981 45.455 0.00 0.00 0.00 3.58 F
2642 5303 0.107606 AGAGGCAGCAGAATCAGCAG 60.108 55.000 0.00 0.00 0.00 4.24 F
4463 8624 1.028868 GCCAAGCTAGCTGTTCTGGG 61.029 60.000 26.94 18.35 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 4366 3.181500 GGACACGAAAGAATACCATTGGC 60.181 47.826 1.54 0.00 0.00 4.52 R
2519 5171 0.998145 AAGGAGCTCCAGCCATTTCT 59.002 50.000 33.90 7.59 43.38 2.52 R
2642 5303 1.269448 GCGATGATCTCCTCCTCTGTC 59.731 57.143 0.00 0.00 0.00 3.51 R
4021 6780 1.153489 CGAGCACCTGCAGCAGTAT 60.153 57.895 21.26 6.12 45.16 2.12 R
4618 8779 0.033699 ATTTCTGAGCCTTGGCCCTC 60.034 55.000 8.17 0.00 0.00 4.30 R
5335 9559 2.833631 AACAAACGGAGGGAGTACTG 57.166 50.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 2691 6.887368 ACAAAAACAAGCACAAAACTTCTTC 58.113 32.000 0.00 0.00 0.00 2.87
162 2731 4.082733 TGCATAGTAGCTAGTCTATTGGCG 60.083 45.833 3.81 0.00 34.99 5.69
183 2752 5.551760 CGGAGCAATACTGATCAAAGTTT 57.448 39.130 0.00 0.00 39.86 2.66
184 2753 5.942872 CGGAGCAATACTGATCAAAGTTTT 58.057 37.500 0.00 0.00 39.86 2.43
185 2754 7.072177 CGGAGCAATACTGATCAAAGTTTTA 57.928 36.000 0.00 0.00 39.86 1.52
186 2755 7.526608 CGGAGCAATACTGATCAAAGTTTTAA 58.473 34.615 0.00 0.00 39.86 1.52
187 2756 8.020819 CGGAGCAATACTGATCAAAGTTTTAAA 58.979 33.333 0.00 0.00 39.86 1.52
188 2757 9.860898 GGAGCAATACTGATCAAAGTTTTAAAT 57.139 29.630 0.00 0.00 39.86 1.40
195 2764 7.244192 ACTGATCAAAGTTTTAAATAGCGAGC 58.756 34.615 0.00 0.00 0.00 5.03
196 2765 7.119846 ACTGATCAAAGTTTTAAATAGCGAGCT 59.880 33.333 2.25 2.25 0.00 4.09
197 2766 8.487313 TGATCAAAGTTTTAAATAGCGAGCTA 57.513 30.769 7.31 7.31 0.00 3.32
198 2767 8.941977 TGATCAAAGTTTTAAATAGCGAGCTAA 58.058 29.630 9.00 0.00 31.73 3.09
199 2768 9.427127 GATCAAAGTTTTAAATAGCGAGCTAAG 57.573 33.333 9.00 0.00 31.73 2.18
200 2769 7.241376 TCAAAGTTTTAAATAGCGAGCTAAGC 58.759 34.615 9.00 5.59 31.73 3.09
201 2770 5.736486 AGTTTTAAATAGCGAGCTAAGCC 57.264 39.130 9.00 0.00 34.64 4.35
202 2771 5.183228 AGTTTTAAATAGCGAGCTAAGCCA 58.817 37.500 9.00 0.00 34.64 4.75
203 2772 5.064834 AGTTTTAAATAGCGAGCTAAGCCAC 59.935 40.000 9.00 2.50 34.64 5.01
204 2773 2.990066 AAATAGCGAGCTAAGCCACT 57.010 45.000 9.00 0.00 34.64 4.00
205 2774 2.990066 AATAGCGAGCTAAGCCACTT 57.010 45.000 9.00 0.00 34.64 3.16
206 2775 4.402056 AAATAGCGAGCTAAGCCACTTA 57.598 40.909 9.00 0.00 34.64 2.24
207 2776 3.651803 ATAGCGAGCTAAGCCACTTAG 57.348 47.619 9.00 9.52 44.29 2.18
217 2786 2.982130 CCACTTAGCGGCAGACCT 59.018 61.111 1.45 0.00 0.00 3.85
218 2787 1.153549 CCACTTAGCGGCAGACCTC 60.154 63.158 1.45 0.00 0.00 3.85
219 2788 1.608717 CCACTTAGCGGCAGACCTCT 61.609 60.000 1.45 0.00 34.60 3.69
220 2789 0.247736 CACTTAGCGGCAGACCTCTT 59.752 55.000 1.45 0.00 31.87 2.85
221 2790 0.533032 ACTTAGCGGCAGACCTCTTC 59.467 55.000 1.45 0.00 31.87 2.87
222 2791 0.820871 CTTAGCGGCAGACCTCTTCT 59.179 55.000 1.45 0.00 31.87 2.85
223 2792 2.025155 CTTAGCGGCAGACCTCTTCTA 58.975 52.381 1.45 0.00 31.87 2.10
224 2793 2.139323 TAGCGGCAGACCTCTTCTAA 57.861 50.000 1.45 0.00 31.87 2.10
225 2794 1.267121 AGCGGCAGACCTCTTCTAAA 58.733 50.000 1.45 0.00 31.12 1.85
226 2795 1.066787 AGCGGCAGACCTCTTCTAAAC 60.067 52.381 1.45 0.00 31.12 2.01
227 2796 1.630148 CGGCAGACCTCTTCTAAACG 58.370 55.000 0.00 0.00 31.12 3.60
228 2797 1.360820 GGCAGACCTCTTCTAAACGC 58.639 55.000 0.00 0.00 31.12 4.84
229 2798 1.066787 GGCAGACCTCTTCTAAACGCT 60.067 52.381 0.00 0.00 31.12 5.07
230 2799 2.165845 GGCAGACCTCTTCTAAACGCTA 59.834 50.000 0.00 0.00 31.12 4.26
231 2800 3.181474 GGCAGACCTCTTCTAAACGCTAT 60.181 47.826 0.00 0.00 31.12 2.97
232 2801 4.037684 GGCAGACCTCTTCTAAACGCTATA 59.962 45.833 0.00 0.00 31.12 1.31
233 2802 5.216648 GCAGACCTCTTCTAAACGCTATAG 58.783 45.833 0.00 0.00 31.12 1.31
234 2803 5.216648 CAGACCTCTTCTAAACGCTATAGC 58.783 45.833 15.09 15.09 31.12 2.97
252 2821 8.782533 GCTATAGCGCTATTTAAAATGTTTGT 57.217 30.769 33.15 8.85 0.00 2.83
253 2822 9.233232 GCTATAGCGCTATTTAAAATGTTTGTT 57.767 29.630 33.15 8.19 0.00 2.83
256 2825 9.801873 ATAGCGCTATTTAAAATGTTTGTTCAT 57.198 25.926 24.15 0.00 0.00 2.57
257 2826 7.952339 AGCGCTATTTAAAATGTTTGTTCATG 58.048 30.769 8.99 0.00 0.00 3.07
258 2827 7.598493 AGCGCTATTTAAAATGTTTGTTCATGT 59.402 29.630 8.99 0.00 0.00 3.21
259 2828 7.683676 GCGCTATTTAAAATGTTTGTTCATGTG 59.316 33.333 0.00 0.00 0.00 3.21
260 2829 8.698854 CGCTATTTAAAATGTTTGTTCATGTGT 58.301 29.630 0.00 0.00 0.00 3.72
265 2834 8.777865 TTAAAATGTTTGTTCATGTGTTTGGA 57.222 26.923 0.00 0.00 0.00 3.53
266 2835 6.907206 AAATGTTTGTTCATGTGTTTGGAG 57.093 33.333 0.00 0.00 0.00 3.86
267 2836 3.779759 TGTTTGTTCATGTGTTTGGAGC 58.220 40.909 0.00 0.00 0.00 4.70
268 2837 3.194329 TGTTTGTTCATGTGTTTGGAGCA 59.806 39.130 0.00 0.00 0.00 4.26
269 2838 4.180057 GTTTGTTCATGTGTTTGGAGCAA 58.820 39.130 0.00 0.00 31.34 3.91
270 2839 4.462508 TTGTTCATGTGTTTGGAGCAAA 57.537 36.364 0.00 0.00 30.48 3.68
271 2840 4.044336 TGTTCATGTGTTTGGAGCAAAG 57.956 40.909 0.00 0.00 33.82 2.77
272 2841 3.698539 TGTTCATGTGTTTGGAGCAAAGA 59.301 39.130 0.00 0.00 33.82 2.52
273 2842 4.202040 TGTTCATGTGTTTGGAGCAAAGAG 60.202 41.667 0.00 0.00 33.82 2.85
274 2843 2.294233 TCATGTGTTTGGAGCAAAGAGC 59.706 45.455 0.00 0.00 46.19 4.09
283 2852 3.578456 GCAAAGAGCCTTAGCGCA 58.422 55.556 11.47 0.00 46.67 6.09
284 2853 1.427020 GCAAAGAGCCTTAGCGCAG 59.573 57.895 11.47 0.00 46.67 5.18
285 2854 1.986575 GCAAAGAGCCTTAGCGCAGG 61.987 60.000 11.47 10.26 46.67 4.85
286 2855 0.391661 CAAAGAGCCTTAGCGCAGGA 60.392 55.000 17.49 0.00 46.67 3.86
287 2856 0.391793 AAAGAGCCTTAGCGCAGGAC 60.392 55.000 17.49 9.95 46.67 3.85
288 2857 2.202946 GAGCCTTAGCGCAGGACC 60.203 66.667 17.49 4.32 46.67 4.46
289 2858 2.685380 AGCCTTAGCGCAGGACCT 60.685 61.111 17.49 3.27 46.67 3.85
290 2859 1.381327 AGCCTTAGCGCAGGACCTA 60.381 57.895 17.49 0.00 46.67 3.08
291 2860 0.760945 AGCCTTAGCGCAGGACCTAT 60.761 55.000 17.49 0.00 46.67 2.57
292 2861 0.106894 GCCTTAGCGCAGGACCTATT 59.893 55.000 17.49 0.00 35.71 1.73
293 2862 1.874320 GCCTTAGCGCAGGACCTATTC 60.874 57.143 17.49 0.00 35.71 1.75
294 2863 1.689273 CCTTAGCGCAGGACCTATTCT 59.311 52.381 11.47 0.00 35.71 2.40
295 2864 2.891580 CCTTAGCGCAGGACCTATTCTA 59.108 50.000 11.47 0.00 35.71 2.10
296 2865 3.321111 CCTTAGCGCAGGACCTATTCTAA 59.679 47.826 11.47 1.38 35.71 2.10
297 2866 4.202223 CCTTAGCGCAGGACCTATTCTAAA 60.202 45.833 11.47 0.00 35.71 1.85
298 2867 5.511545 CCTTAGCGCAGGACCTATTCTAAAT 60.512 44.000 11.47 0.00 35.71 1.40
299 2868 3.733337 AGCGCAGGACCTATTCTAAATG 58.267 45.455 11.47 0.00 0.00 2.32
300 2869 2.224314 GCGCAGGACCTATTCTAAATGC 59.776 50.000 0.30 0.00 0.00 3.56
301 2870 3.733337 CGCAGGACCTATTCTAAATGCT 58.267 45.455 0.00 0.00 0.00 3.79
302 2871 4.799586 GCGCAGGACCTATTCTAAATGCTA 60.800 45.833 0.30 0.00 0.00 3.49
303 2872 5.482908 CGCAGGACCTATTCTAAATGCTAT 58.517 41.667 0.00 0.00 0.00 2.97
304 2873 6.631016 CGCAGGACCTATTCTAAATGCTATA 58.369 40.000 0.00 0.00 0.00 1.31
305 2874 6.754209 CGCAGGACCTATTCTAAATGCTATAG 59.246 42.308 0.00 0.00 0.00 1.31
306 2875 6.536941 GCAGGACCTATTCTAAATGCTATAGC 59.463 42.308 18.18 18.18 42.50 2.97
343 2912 5.292671 GCTATAGCGGGCTATTTAAAACC 57.707 43.478 17.49 0.00 39.65 3.27
344 2913 4.758165 GCTATAGCGGGCTATTTAAAACCA 59.242 41.667 17.49 0.00 39.65 3.67
345 2914 5.414765 GCTATAGCGGGCTATTTAAAACCAT 59.585 40.000 17.49 0.00 39.65 3.55
346 2915 5.705609 ATAGCGGGCTATTTAAAACCATG 57.294 39.130 7.36 0.00 35.92 3.66
350 2919 5.473504 AGCGGGCTATTTAAAACCATGATAG 59.526 40.000 0.00 0.00 0.00 2.08
355 2924 8.860088 GGGCTATTTAAAACCATGATAGTGATT 58.140 33.333 0.00 0.00 0.00 2.57
398 2967 6.880529 TCAAGTCTGAATCTCATGCACAAATA 59.119 34.615 0.00 0.00 0.00 1.40
437 3006 6.767524 TTTCTAAGAGAACAAAACCTGCAA 57.232 33.333 0.00 0.00 33.26 4.08
473 3043 6.748333 CAGGATCTTCTGCTTGTCAATTTA 57.252 37.500 0.00 0.00 0.00 1.40
511 3082 2.954611 GCAGGTGGCCTCGTTTTC 59.045 61.111 3.32 0.00 36.11 2.29
554 3126 3.377798 TCGTTTTTCAAAAAGGGTACGCT 59.622 39.130 13.87 6.62 31.88 5.07
595 3168 7.110179 CATGATATCATGTGTCCGTACTTTC 57.890 40.000 29.90 0.00 46.40 2.62
602 3175 1.269448 GTGTCCGTACTTTCGTACCCA 59.731 52.381 0.00 0.00 42.38 4.51
621 3196 7.548075 CGTACCCAATTTTCACTAGTGTATTCT 59.452 37.037 21.99 3.54 0.00 2.40
875 3457 2.488153 CCTTGTTTGCTAGTAGTTGCCC 59.512 50.000 1.44 0.00 0.00 5.36
914 3504 5.289193 TCGTTTACGGCATAGACAAACATAC 59.711 40.000 2.09 0.00 40.29 2.39
1355 3956 5.997746 CCTAATCTGTTCTCTGTTCACCAAA 59.002 40.000 0.00 0.00 0.00 3.28
1634 4276 2.487762 TCCAACAAAATCATCGGCACTC 59.512 45.455 0.00 0.00 0.00 3.51
1724 4366 8.858003 ACAGAGACAAACAACATAGTATATCG 57.142 34.615 0.00 0.00 0.00 2.92
2519 5171 3.018856 GCATCAACCATCATCCTTGTCA 58.981 45.455 0.00 0.00 0.00 3.58
2642 5303 0.107606 AGAGGCAGCAGAATCAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
2771 5432 1.067915 CGCCCATTTGACAAACGGATT 60.068 47.619 14.49 0.00 0.00 3.01
2911 5572 4.224594 ACTCCAGCCATATCGATCATCATT 59.775 41.667 0.00 0.00 0.00 2.57
2959 5620 4.107127 ACAGAGACACTACAAGGACTCT 57.893 45.455 0.00 0.00 35.52 3.24
3307 5983 7.187676 AGTAAATGGTCCACTAAGGTAGTAGT 58.812 38.462 0.00 0.00 37.23 2.73
3365 6041 1.063806 CCAAGAGAGAAACTGCGACG 58.936 55.000 0.00 0.00 0.00 5.12
3534 6214 7.123397 ACAGAGTAAATCTCACTAAGATGCTCA 59.877 37.037 12.65 0.00 44.26 4.26
3979 6731 8.629158 TGATTTGTAACTTTGAAGTAGTTGCAT 58.371 29.630 7.22 0.00 44.08 3.96
4157 8318 7.332182 GGACAACGATAAGAAGAAGAAGAACAT 59.668 37.037 0.00 0.00 0.00 2.71
4268 8429 2.540515 TGATCTCGACTCAATTTCGCC 58.459 47.619 0.00 0.00 36.40 5.54
4375 8536 4.735132 TGACCGCGGAAAGCCTCG 62.735 66.667 35.90 0.93 44.76 4.63
4463 8624 1.028868 GCCAAGCTAGCTGTTCTGGG 61.029 60.000 26.94 18.35 0.00 4.45
4551 8712 1.081892 CCAACAGGATGAGCAAGACG 58.918 55.000 0.00 0.00 39.69 4.18
4618 8779 3.567164 ACTGCAACTCCACAGAGAAATTG 59.433 43.478 0.00 0.00 43.39 2.32
4789 8981 1.250476 GATGTTTCACGCATTGACGC 58.750 50.000 0.00 0.00 32.26 5.19
4877 9071 7.824289 TGCATATATACTTGTTTCATAGAGGGC 59.176 37.037 0.00 0.00 0.00 5.19
4878 9072 7.824289 GCATATATACTTGTTTCATAGAGGGCA 59.176 37.037 0.00 0.00 0.00 5.36
4931 9125 5.106555 CCGACATGTAGATAATCCAAATGGC 60.107 44.000 7.62 0.00 34.44 4.40
4934 9128 7.042797 ACATGTAGATAATCCAAATGGCAAC 57.957 36.000 0.00 0.00 34.44 4.17
4957 9151 0.038310 AAGGCAGGGGCTGAGTTAAC 59.962 55.000 0.00 0.00 38.81 2.01
4962 9156 2.747989 GCAGGGGCTGAGTTAACTTAAC 59.252 50.000 10.02 0.50 36.62 2.01
4966 9160 6.407752 GCAGGGGCTGAGTTAACTTAACTATA 60.408 42.308 10.02 6.19 42.15 1.31
4995 9204 9.959749 TGTGAATAAACTTGGAGTTAACATTTC 57.040 29.630 8.61 0.00 37.47 2.17
5004 9213 7.876582 ACTTGGAGTTAACATTTCAGTAGTACC 59.123 37.037 8.61 0.00 0.00 3.34
5005 9214 6.392354 TGGAGTTAACATTTCAGTAGTACCG 58.608 40.000 8.61 0.00 0.00 4.02
5009 9218 9.410556 GAGTTAACATTTCAGTAGTACCGTTTA 57.589 33.333 8.61 0.00 0.00 2.01
5021 9230 1.394618 ACCGTTTAGCAAAGGCAACA 58.605 45.000 0.00 0.00 44.61 3.33
5024 9233 2.350772 CCGTTTAGCAAAGGCAACAGAG 60.351 50.000 0.00 0.00 44.61 3.35
5025 9234 2.548057 CGTTTAGCAAAGGCAACAGAGA 59.452 45.455 0.00 0.00 44.61 3.10
5026 9235 3.607078 CGTTTAGCAAAGGCAACAGAGAC 60.607 47.826 0.00 0.00 44.61 3.36
5027 9236 2.928801 TAGCAAAGGCAACAGAGACA 57.071 45.000 0.00 0.00 44.61 3.41
5029 9238 2.378038 AGCAAAGGCAACAGAGACAAA 58.622 42.857 0.00 0.00 44.61 2.83
5030 9239 2.099756 AGCAAAGGCAACAGAGACAAAC 59.900 45.455 0.00 0.00 44.61 2.93
5031 9240 2.159254 GCAAAGGCAACAGAGACAAACA 60.159 45.455 0.00 0.00 40.72 2.83
5032 9241 3.675775 GCAAAGGCAACAGAGACAAACAA 60.676 43.478 0.00 0.00 40.72 2.83
5033 9242 4.107622 CAAAGGCAACAGAGACAAACAAG 58.892 43.478 0.00 0.00 41.41 3.16
5034 9243 1.678101 AGGCAACAGAGACAAACAAGC 59.322 47.619 0.00 0.00 41.41 4.01
5035 9244 1.269257 GGCAACAGAGACAAACAAGCC 60.269 52.381 0.00 0.00 0.00 4.35
5037 9246 2.542411 GCAACAGAGACAAACAAGCCAG 60.542 50.000 0.00 0.00 0.00 4.85
5038 9247 2.684881 CAACAGAGACAAACAAGCCAGT 59.315 45.455 0.00 0.00 0.00 4.00
5039 9248 2.292267 ACAGAGACAAACAAGCCAGTG 58.708 47.619 0.00 0.00 0.00 3.66
5040 9249 2.292267 CAGAGACAAACAAGCCAGTGT 58.708 47.619 0.00 0.00 0.00 3.55
5041 9250 2.684881 CAGAGACAAACAAGCCAGTGTT 59.315 45.455 0.00 0.00 43.58 3.32
5044 9260 0.894141 ACAAACAAGCCAGTGTTGCA 59.106 45.000 0.00 0.00 40.86 4.08
5063 9279 1.474077 CATTGCAAGTACAGGGGCTTC 59.526 52.381 4.94 0.00 0.00 3.86
5069 9285 3.344515 CAAGTACAGGGGCTTCCTAAAC 58.655 50.000 0.00 1.93 46.12 2.01
5075 9291 2.062636 AGGGGCTTCCTAAACACAGAA 58.937 47.619 0.00 0.00 45.98 3.02
5083 9299 2.038557 TCCTAAACACAGAAGCTCCACC 59.961 50.000 0.00 0.00 0.00 4.61
5087 9303 1.669115 CACAGAAGCTCCACCGGTG 60.669 63.158 28.26 28.26 0.00 4.94
5092 9308 2.628178 CAGAAGCTCCACCGGTGATATA 59.372 50.000 36.07 16.34 0.00 0.86
5094 9310 3.709653 AGAAGCTCCACCGGTGATATAAA 59.290 43.478 36.07 12.13 0.00 1.40
5095 9311 3.470645 AGCTCCACCGGTGATATAAAC 57.529 47.619 36.07 16.41 0.00 2.01
5100 9321 4.699637 TCCACCGGTGATATAAACATGAC 58.300 43.478 36.07 0.00 0.00 3.06
5102 9323 4.272504 CCACCGGTGATATAAACATGACAC 59.727 45.833 36.07 0.00 0.00 3.67
5105 9326 5.758296 ACCGGTGATATAAACATGACACATC 59.242 40.000 6.12 0.00 0.00 3.06
5109 9330 6.061441 GTGATATAAACATGACACATCCCCA 58.939 40.000 0.00 0.00 0.00 4.96
5110 9331 6.205464 GTGATATAAACATGACACATCCCCAG 59.795 42.308 0.00 0.00 0.00 4.45
5115 9336 2.768527 ACATGACACATCCCCAGAGTAG 59.231 50.000 0.00 0.00 0.00 2.57
5116 9337 2.623418 TGACACATCCCCAGAGTAGT 57.377 50.000 0.00 0.00 0.00 2.73
5132 9353 7.488471 CCCAGAGTAGTTTATGAACTAAGAACG 59.512 40.741 11.34 1.18 46.80 3.95
5137 9358 9.939802 AGTAGTTTATGAACTAAGAACGGATTT 57.060 29.630 11.34 0.00 46.80 2.17
5178 9399 6.039717 ACCAAATGCAGCTTATAAGTACCATG 59.960 38.462 13.91 6.82 0.00 3.66
5194 9415 8.736751 AAGTACCATGTAAATTAACGCAAAAG 57.263 30.769 0.00 0.00 0.00 2.27
5196 9417 8.736244 AGTACCATGTAAATTAACGCAAAAGAT 58.264 29.630 0.00 0.00 0.00 2.40
5198 9419 6.811170 ACCATGTAAATTAACGCAAAAGATGG 59.189 34.615 0.00 0.00 33.22 3.51
5199 9420 6.237808 CCATGTAAATTAACGCAAAAGATGGC 60.238 38.462 0.00 0.00 0.00 4.40
5208 9429 1.344114 GCAAAAGATGGCCAGGTGAAA 59.656 47.619 13.05 0.00 0.00 2.69
5213 9434 0.324645 GATGGCCAGGTGAAATGGGT 60.325 55.000 13.05 0.00 38.33 4.51
5228 9449 7.170828 GGTGAAATGGGTATTGAACAAAGTTTC 59.829 37.037 0.00 0.00 0.00 2.78
5240 9461 7.681939 TGAACAAAGTTTCCATATCAGTACC 57.318 36.000 0.00 0.00 0.00 3.34
5241 9462 6.657541 TGAACAAAGTTTCCATATCAGTACCC 59.342 38.462 0.00 0.00 0.00 3.69
5251 9475 4.499865 CCATATCAGTACCCGAGTGAACTG 60.500 50.000 0.00 0.00 40.96 3.16
5259 9483 0.041312 CCGAGTGAACTGCAAAACCG 60.041 55.000 0.00 0.00 0.00 4.44
5261 9485 1.332904 CGAGTGAACTGCAAAACCGTC 60.333 52.381 0.00 0.00 0.00 4.79
5265 9489 2.223377 GTGAACTGCAAAACCGTCCTAG 59.777 50.000 0.00 0.00 0.00 3.02
5280 9504 3.064958 CGTCCTAGCTTCATCTCGTGTAA 59.935 47.826 0.00 0.00 0.00 2.41
5299 9523 8.231837 TCGTGTAAGAAAGTTAATTTATGTGCC 58.768 33.333 0.00 0.00 0.00 5.01
5300 9524 7.483691 CGTGTAAGAAAGTTAATTTATGTGCCC 59.516 37.037 0.00 0.00 0.00 5.36
5315 9539 2.575735 TGTGCCCTGATTCTATTCCACA 59.424 45.455 0.00 0.00 0.00 4.17
5327 9551 5.894298 TCTATTCCACACATGCCTCTATT 57.106 39.130 0.00 0.00 0.00 1.73
5335 9559 7.161404 TCCACACATGCCTCTATTTCATATAC 58.839 38.462 0.00 0.00 0.00 1.47
5336 9560 6.936335 CCACACATGCCTCTATTTCATATACA 59.064 38.462 0.00 0.00 0.00 2.29
5337 9561 7.118825 CCACACATGCCTCTATTTCATATACAG 59.881 40.741 0.00 0.00 0.00 2.74
5338 9562 7.658982 CACACATGCCTCTATTTCATATACAGT 59.341 37.037 0.00 0.00 0.00 3.55
5339 9563 8.870116 ACACATGCCTCTATTTCATATACAGTA 58.130 33.333 0.00 0.00 0.00 2.74
5340 9564 9.144747 CACATGCCTCTATTTCATATACAGTAC 57.855 37.037 0.00 0.00 0.00 2.73
5341 9565 9.094578 ACATGCCTCTATTTCATATACAGTACT 57.905 33.333 0.00 0.00 0.00 2.73
5342 9566 9.579768 CATGCCTCTATTTCATATACAGTACTC 57.420 37.037 0.00 0.00 0.00 2.59
5343 9567 8.123639 TGCCTCTATTTCATATACAGTACTCC 57.876 38.462 0.00 0.00 0.00 3.85
5344 9568 7.178628 TGCCTCTATTTCATATACAGTACTCCC 59.821 40.741 0.00 0.00 0.00 4.30
5345 9569 7.397761 GCCTCTATTTCATATACAGTACTCCCT 59.602 40.741 0.00 0.00 0.00 4.20
5346 9570 8.962679 CCTCTATTTCATATACAGTACTCCCTC 58.037 40.741 0.00 0.00 0.00 4.30
5347 9571 8.880991 TCTATTTCATATACAGTACTCCCTCC 57.119 38.462 0.00 0.00 0.00 4.30
5348 9572 6.591750 ATTTCATATACAGTACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
5349 9573 4.719026 TCATATACAGTACTCCCTCCGT 57.281 45.455 0.00 0.00 0.00 4.69
5350 9574 5.057843 TCATATACAGTACTCCCTCCGTT 57.942 43.478 0.00 0.00 0.00 4.44
5351 9575 5.452255 TCATATACAGTACTCCCTCCGTTT 58.548 41.667 0.00 0.00 0.00 3.60
5352 9576 5.301045 TCATATACAGTACTCCCTCCGTTTG 59.699 44.000 0.00 0.00 0.00 2.93
5353 9577 1.713297 ACAGTACTCCCTCCGTTTGT 58.287 50.000 0.00 0.00 0.00 2.83
5354 9578 2.044758 ACAGTACTCCCTCCGTTTGTT 58.955 47.619 0.00 0.00 0.00 2.83
5355 9579 2.436911 ACAGTACTCCCTCCGTTTGTTT 59.563 45.455 0.00 0.00 0.00 2.83
5356 9580 3.118149 ACAGTACTCCCTCCGTTTGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
5357 9581 3.881089 CAGTACTCCCTCCGTTTGTTTTT 59.119 43.478 0.00 0.00 0.00 1.94
5358 9582 5.058490 CAGTACTCCCTCCGTTTGTTTTTA 58.942 41.667 0.00 0.00 0.00 1.52
5359 9583 5.704053 CAGTACTCCCTCCGTTTGTTTTTAT 59.296 40.000 0.00 0.00 0.00 1.40
5360 9584 6.875195 CAGTACTCCCTCCGTTTGTTTTTATA 59.125 38.462 0.00 0.00 0.00 0.98
5361 9585 7.388500 CAGTACTCCCTCCGTTTGTTTTTATAA 59.612 37.037 0.00 0.00 0.00 0.98
5362 9586 6.812879 ACTCCCTCCGTTTGTTTTTATAAG 57.187 37.500 0.00 0.00 0.00 1.73
5363 9587 6.536447 ACTCCCTCCGTTTGTTTTTATAAGA 58.464 36.000 0.00 0.00 0.00 2.10
5364 9588 6.429078 ACTCCCTCCGTTTGTTTTTATAAGAC 59.571 38.462 0.00 0.00 0.00 3.01
5365 9589 5.409214 TCCCTCCGTTTGTTTTTATAAGACG 59.591 40.000 0.00 0.00 0.00 4.18
5366 9590 5.179929 CCCTCCGTTTGTTTTTATAAGACGT 59.820 40.000 0.00 0.00 0.00 4.34
5367 9591 6.293571 CCCTCCGTTTGTTTTTATAAGACGTT 60.294 38.462 0.00 0.00 0.00 3.99
5368 9592 6.793680 CCTCCGTTTGTTTTTATAAGACGTTC 59.206 38.462 0.00 0.00 0.00 3.95
5369 9593 7.244166 TCCGTTTGTTTTTATAAGACGTTCA 57.756 32.000 0.00 0.00 0.00 3.18
5370 9594 7.346695 TCCGTTTGTTTTTATAAGACGTTCAG 58.653 34.615 0.00 0.00 0.00 3.02
5371 9595 7.224362 TCCGTTTGTTTTTATAAGACGTTCAGA 59.776 33.333 0.00 0.00 0.00 3.27
5372 9596 7.529519 CCGTTTGTTTTTATAAGACGTTCAGAG 59.470 37.037 0.00 0.00 0.00 3.35
5373 9597 8.060090 CGTTTGTTTTTATAAGACGTTCAGAGT 58.940 33.333 0.00 0.00 0.00 3.24
5374 9598 9.712359 GTTTGTTTTTATAAGACGTTCAGAGTT 57.288 29.630 0.00 0.00 0.00 3.01
5375 9599 9.925268 TTTGTTTTTATAAGACGTTCAGAGTTC 57.075 29.630 0.00 0.00 0.00 3.01
5376 9600 8.651391 TGTTTTTATAAGACGTTCAGAGTTCA 57.349 30.769 0.00 0.00 0.00 3.18
5377 9601 8.761497 TGTTTTTATAAGACGTTCAGAGTTCAG 58.239 33.333 0.00 0.00 0.00 3.02
5378 9602 8.975439 GTTTTTATAAGACGTTCAGAGTTCAGA 58.025 33.333 0.00 0.00 0.00 3.27
5379 9603 8.516811 TTTTATAAGACGTTCAGAGTTCAGAC 57.483 34.615 0.00 0.00 0.00 3.51
5380 9604 5.707242 ATAAGACGTTCAGAGTTCAGACA 57.293 39.130 0.00 0.00 0.00 3.41
5381 9605 4.386867 AAGACGTTCAGAGTTCAGACAA 57.613 40.909 0.00 0.00 0.00 3.18
5382 9606 3.707793 AGACGTTCAGAGTTCAGACAAC 58.292 45.455 0.00 0.00 0.00 3.32
5383 9607 3.381908 AGACGTTCAGAGTTCAGACAACT 59.618 43.478 0.00 0.00 0.00 3.16
5384 9608 4.113354 GACGTTCAGAGTTCAGACAACTT 58.887 43.478 0.00 0.00 0.00 2.66
5385 9609 3.865745 ACGTTCAGAGTTCAGACAACTTG 59.134 43.478 0.00 0.00 0.00 3.16
5386 9610 3.302740 CGTTCAGAGTTCAGACAACTTGC 60.303 47.826 0.00 0.00 0.00 4.01
5387 9611 3.827008 TCAGAGTTCAGACAACTTGCT 57.173 42.857 0.00 0.00 0.00 3.91
5388 9612 4.142609 TCAGAGTTCAGACAACTTGCTT 57.857 40.909 0.00 0.00 0.00 3.91
5389 9613 4.517285 TCAGAGTTCAGACAACTTGCTTT 58.483 39.130 0.00 0.00 0.00 3.51
5390 9614 4.333649 TCAGAGTTCAGACAACTTGCTTTG 59.666 41.667 0.00 0.00 0.00 2.77
5391 9615 4.095483 CAGAGTTCAGACAACTTGCTTTGT 59.905 41.667 0.00 0.00 42.55 2.83
5392 9616 4.095483 AGAGTTCAGACAACTTGCTTTGTG 59.905 41.667 4.00 0.00 39.88 3.33
5393 9617 2.849880 TCAGACAACTTGCTTTGTGC 57.150 45.000 4.00 0.00 39.88 4.57
5394 9618 2.368439 TCAGACAACTTGCTTTGTGCT 58.632 42.857 4.00 0.34 39.88 4.40
5395 9619 2.097954 TCAGACAACTTGCTTTGTGCTG 59.902 45.455 4.00 9.87 39.88 4.41
5396 9620 2.094675 AGACAACTTGCTTTGTGCTGT 58.905 42.857 4.00 0.00 39.88 4.40
5397 9621 2.493278 AGACAACTTGCTTTGTGCTGTT 59.507 40.909 4.00 0.00 39.88 3.16
5398 9622 3.056607 AGACAACTTGCTTTGTGCTGTTT 60.057 39.130 4.00 0.00 39.88 2.83
5399 9623 3.663025 ACAACTTGCTTTGTGCTGTTTT 58.337 36.364 0.00 0.00 43.37 2.43
5400 9624 4.064388 ACAACTTGCTTTGTGCTGTTTTT 58.936 34.783 0.00 0.00 43.37 1.94
5401 9625 4.083908 ACAACTTGCTTTGTGCTGTTTTTG 60.084 37.500 0.00 0.00 43.37 2.44
5402 9626 3.924144 ACTTGCTTTGTGCTGTTTTTGA 58.076 36.364 0.00 0.00 43.37 2.69
5403 9627 4.314121 ACTTGCTTTGTGCTGTTTTTGAA 58.686 34.783 0.00 0.00 43.37 2.69
5404 9628 4.152223 ACTTGCTTTGTGCTGTTTTTGAAC 59.848 37.500 0.00 0.00 43.37 3.18
5405 9629 3.657634 TGCTTTGTGCTGTTTTTGAACA 58.342 36.364 0.00 0.00 43.37 3.18
5416 9640 6.859715 CTGTTTTTGAACAGTGTCTGAAAG 57.140 37.500 10.34 0.00 43.80 2.62
5417 9641 6.325919 TGTTTTTGAACAGTGTCTGAAAGT 57.674 33.333 0.00 0.00 35.18 2.66
5418 9642 6.378582 TGTTTTTGAACAGTGTCTGAAAGTC 58.621 36.000 0.00 0.00 35.18 3.01
5419 9643 6.206634 TGTTTTTGAACAGTGTCTGAAAGTCT 59.793 34.615 0.00 0.00 35.18 3.24
5420 9644 7.389330 TGTTTTTGAACAGTGTCTGAAAGTCTA 59.611 33.333 0.00 0.00 35.18 2.59
5421 9645 7.915293 TTTTGAACAGTGTCTGAAAGTCTAA 57.085 32.000 0.00 0.00 35.18 2.10
5422 9646 7.915293 TTTGAACAGTGTCTGAAAGTCTAAA 57.085 32.000 0.00 0.00 35.18 1.85
5423 9647 7.915293 TTGAACAGTGTCTGAAAGTCTAAAA 57.085 32.000 0.00 0.00 35.18 1.52
5424 9648 7.303634 TGAACAGTGTCTGAAAGTCTAAAAC 57.696 36.000 0.00 0.00 35.18 2.43
5425 9649 5.968387 ACAGTGTCTGAAAGTCTAAAACG 57.032 39.130 3.70 0.00 35.18 3.60
5426 9650 5.416947 ACAGTGTCTGAAAGTCTAAAACGT 58.583 37.500 3.70 0.00 35.18 3.99
5427 9651 5.519206 ACAGTGTCTGAAAGTCTAAAACGTC 59.481 40.000 3.70 0.00 35.18 4.34
5428 9652 5.749109 CAGTGTCTGAAAGTCTAAAACGTCT 59.251 40.000 0.00 0.00 32.44 4.18
5429 9653 6.255887 CAGTGTCTGAAAGTCTAAAACGTCTT 59.744 38.462 0.00 0.00 32.44 3.01
5430 9654 7.434307 CAGTGTCTGAAAGTCTAAAACGTCTTA 59.566 37.037 0.00 0.00 32.44 2.10
5431 9655 8.142551 AGTGTCTGAAAGTCTAAAACGTCTTAT 58.857 33.333 0.00 0.00 33.76 1.73
5432 9656 9.403110 GTGTCTGAAAGTCTAAAACGTCTTATA 57.597 33.333 0.00 0.00 33.76 0.98
5433 9657 9.970395 TGTCTGAAAGTCTAAAACGTCTTATAA 57.030 29.630 0.00 0.00 33.76 0.98
5470 9694 9.709495 AGGTAGTACGTTTTAATAAACACATCA 57.291 29.630 0.00 0.00 43.05 3.07
5489 9713 9.857656 ACACATCATGGTATTCTAAATTCATCT 57.142 29.630 0.00 0.00 0.00 2.90
5505 9729 5.692115 TTCATCTAGAACAGGGTATGCAA 57.308 39.130 0.00 0.00 0.00 4.08
5535 9759 6.206048 TGTGCAAATCTATCTATGCTCCAATG 59.794 38.462 0.00 0.00 39.49 2.82
5627 9852 2.587194 CGAGATGGGAGCGGCTTG 60.587 66.667 2.97 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 2588 7.113658 AGTTGGTCGTCAGATGATATACTTT 57.886 36.000 0.00 0.00 0.00 2.66
22 2591 6.073385 TCGTAGTTGGTCGTCAGATGATATAC 60.073 42.308 0.00 0.00 0.00 1.47
32 2601 3.253921 TCTCATTTCGTAGTTGGTCGTCA 59.746 43.478 0.00 0.00 0.00 4.35
35 2604 4.684703 AGTTTCTCATTTCGTAGTTGGTCG 59.315 41.667 0.00 0.00 0.00 4.79
38 2607 6.164176 AGGTAGTTTCTCATTTCGTAGTTGG 58.836 40.000 0.00 0.00 0.00 3.77
162 2731 9.860898 ATTTAAAACTTTGATCAGTATTGCTCC 57.139 29.630 0.00 0.00 0.00 4.70
169 2738 8.388103 GCTCGCTATTTAAAACTTTGATCAGTA 58.612 33.333 0.00 0.00 0.00 2.74
170 2739 7.119846 AGCTCGCTATTTAAAACTTTGATCAGT 59.880 33.333 0.00 0.00 0.00 3.41
171 2740 7.467623 AGCTCGCTATTTAAAACTTTGATCAG 58.532 34.615 0.00 0.00 0.00 2.90
172 2741 7.377766 AGCTCGCTATTTAAAACTTTGATCA 57.622 32.000 0.00 0.00 0.00 2.92
173 2742 9.427127 CTTAGCTCGCTATTTAAAACTTTGATC 57.573 33.333 0.00 0.00 0.00 2.92
174 2743 7.910683 GCTTAGCTCGCTATTTAAAACTTTGAT 59.089 33.333 0.00 0.00 0.00 2.57
175 2744 7.241376 GCTTAGCTCGCTATTTAAAACTTTGA 58.759 34.615 0.00 0.00 0.00 2.69
176 2745 6.469275 GGCTTAGCTCGCTATTTAAAACTTTG 59.531 38.462 3.59 0.00 0.00 2.77
177 2746 6.150474 TGGCTTAGCTCGCTATTTAAAACTTT 59.850 34.615 3.59 0.00 0.00 2.66
178 2747 5.646360 TGGCTTAGCTCGCTATTTAAAACTT 59.354 36.000 3.59 0.00 0.00 2.66
179 2748 5.064834 GTGGCTTAGCTCGCTATTTAAAACT 59.935 40.000 3.59 0.00 0.00 2.66
180 2749 5.064834 AGTGGCTTAGCTCGCTATTTAAAAC 59.935 40.000 3.59 0.00 0.00 2.43
181 2750 5.183228 AGTGGCTTAGCTCGCTATTTAAAA 58.817 37.500 3.59 0.00 0.00 1.52
182 2751 4.766375 AGTGGCTTAGCTCGCTATTTAAA 58.234 39.130 3.59 0.00 0.00 1.52
183 2752 4.402056 AGTGGCTTAGCTCGCTATTTAA 57.598 40.909 3.59 0.00 0.00 1.52
184 2753 4.402056 AAGTGGCTTAGCTCGCTATTTA 57.598 40.909 3.59 0.00 0.00 1.40
185 2754 2.990066 AGTGGCTTAGCTCGCTATTT 57.010 45.000 3.59 0.00 0.00 1.40
186 2755 2.990066 AAGTGGCTTAGCTCGCTATT 57.010 45.000 3.59 0.00 0.00 1.73
187 2756 3.651803 CTAAGTGGCTTAGCTCGCTAT 57.348 47.619 3.59 1.44 37.27 2.97
200 2769 1.153549 GAGGTCTGCCGCTAAGTGG 60.154 63.158 0.00 0.00 40.50 4.00
201 2770 0.247736 AAGAGGTCTGCCGCTAAGTG 59.752 55.000 0.00 0.00 44.34 3.16
202 2771 0.533032 GAAGAGGTCTGCCGCTAAGT 59.467 55.000 0.00 0.00 44.34 2.24
203 2772 0.820871 AGAAGAGGTCTGCCGCTAAG 59.179 55.000 0.00 0.00 44.34 2.18
204 2773 2.139323 TAGAAGAGGTCTGCCGCTAA 57.861 50.000 0.00 0.00 44.34 3.09
205 2774 2.139323 TTAGAAGAGGTCTGCCGCTA 57.861 50.000 0.00 0.00 44.34 4.26
207 2776 1.360820 GTTTAGAAGAGGTCTGCCGC 58.639 55.000 0.00 0.00 40.50 6.53
208 2777 1.630148 CGTTTAGAAGAGGTCTGCCG 58.370 55.000 0.00 0.00 40.50 5.69
209 2778 1.066787 AGCGTTTAGAAGAGGTCTGCC 60.067 52.381 0.00 0.00 37.12 4.85
210 2779 2.371910 AGCGTTTAGAAGAGGTCTGC 57.628 50.000 0.00 0.00 37.12 4.26
211 2780 5.216648 GCTATAGCGTTTAGAAGAGGTCTG 58.783 45.833 9.40 0.00 37.12 3.51
212 2781 5.441709 GCTATAGCGTTTAGAAGAGGTCT 57.558 43.478 9.40 0.00 40.71 3.85
227 2796 8.782533 ACAAACATTTTAAATAGCGCTATAGC 57.217 30.769 29.20 15.09 37.78 2.97
230 2799 9.801873 ATGAACAAACATTTTAAATAGCGCTAT 57.198 25.926 24.15 24.15 0.00 2.97
231 2800 9.071221 CATGAACAAACATTTTAAATAGCGCTA 57.929 29.630 21.30 21.30 0.00 4.26
232 2801 7.598493 ACATGAACAAACATTTTAAATAGCGCT 59.402 29.630 17.26 17.26 0.00 5.92
233 2802 7.683676 CACATGAACAAACATTTTAAATAGCGC 59.316 33.333 0.00 0.00 0.00 5.92
234 2803 8.698854 ACACATGAACAAACATTTTAAATAGCG 58.301 29.630 0.00 0.00 0.00 4.26
239 2808 9.219603 TCCAAACACATGAACAAACATTTTAAA 57.780 25.926 0.00 0.00 0.00 1.52
240 2809 8.777865 TCCAAACACATGAACAAACATTTTAA 57.222 26.923 0.00 0.00 0.00 1.52
241 2810 7.010923 GCTCCAAACACATGAACAAACATTTTA 59.989 33.333 0.00 0.00 0.00 1.52
242 2811 6.183360 GCTCCAAACACATGAACAAACATTTT 60.183 34.615 0.00 0.00 0.00 1.82
243 2812 5.294060 GCTCCAAACACATGAACAAACATTT 59.706 36.000 0.00 0.00 0.00 2.32
244 2813 4.810491 GCTCCAAACACATGAACAAACATT 59.190 37.500 0.00 0.00 0.00 2.71
245 2814 4.141981 TGCTCCAAACACATGAACAAACAT 60.142 37.500 0.00 0.00 0.00 2.71
246 2815 3.194329 TGCTCCAAACACATGAACAAACA 59.806 39.130 0.00 0.00 0.00 2.83
247 2816 3.779759 TGCTCCAAACACATGAACAAAC 58.220 40.909 0.00 0.00 0.00 2.93
248 2817 4.462508 TTGCTCCAAACACATGAACAAA 57.537 36.364 0.00 0.00 0.00 2.83
249 2818 4.159321 TCTTTGCTCCAAACACATGAACAA 59.841 37.500 0.00 0.00 0.00 2.83
250 2819 3.698539 TCTTTGCTCCAAACACATGAACA 59.301 39.130 0.00 0.00 0.00 3.18
251 2820 4.293415 CTCTTTGCTCCAAACACATGAAC 58.707 43.478 0.00 0.00 0.00 3.18
252 2821 3.243501 GCTCTTTGCTCCAAACACATGAA 60.244 43.478 0.00 0.00 38.95 2.57
253 2822 2.294233 GCTCTTTGCTCCAAACACATGA 59.706 45.455 0.00 0.00 38.95 3.07
254 2823 2.608752 GGCTCTTTGCTCCAAACACATG 60.609 50.000 0.00 0.00 42.39 3.21
255 2824 1.615392 GGCTCTTTGCTCCAAACACAT 59.385 47.619 0.00 0.00 42.39 3.21
256 2825 1.032014 GGCTCTTTGCTCCAAACACA 58.968 50.000 0.00 0.00 42.39 3.72
257 2826 1.322442 AGGCTCTTTGCTCCAAACAC 58.678 50.000 0.00 0.00 42.39 3.32
258 2827 2.071778 AAGGCTCTTTGCTCCAAACA 57.928 45.000 0.00 0.00 42.39 2.83
259 2828 2.095008 GCTAAGGCTCTTTGCTCCAAAC 60.095 50.000 11.84 0.00 42.39 2.93
260 2829 2.162681 GCTAAGGCTCTTTGCTCCAAA 58.837 47.619 11.84 0.00 42.39 3.28
261 2830 1.826385 GCTAAGGCTCTTTGCTCCAA 58.174 50.000 11.84 0.00 42.39 3.53
262 2831 0.391661 CGCTAAGGCTCTTTGCTCCA 60.392 55.000 15.19 0.00 42.39 3.86
263 2832 1.710103 GCGCTAAGGCTCTTTGCTCC 61.710 60.000 0.00 6.52 42.39 4.70
264 2833 1.021390 TGCGCTAAGGCTCTTTGCTC 61.021 55.000 9.73 10.30 42.39 4.26
265 2834 1.003355 TGCGCTAAGGCTCTTTGCT 60.003 52.632 9.73 0.00 42.39 3.91
266 2835 1.427020 CTGCGCTAAGGCTCTTTGC 59.573 57.895 9.73 9.93 41.94 3.68
267 2836 0.391661 TCCTGCGCTAAGGCTCTTTG 60.392 55.000 9.73 0.00 37.24 2.77
268 2837 0.391793 GTCCTGCGCTAAGGCTCTTT 60.392 55.000 9.73 0.00 37.24 2.52
269 2838 1.219393 GTCCTGCGCTAAGGCTCTT 59.781 57.895 9.73 0.00 37.24 2.85
270 2839 2.726351 GGTCCTGCGCTAAGGCTCT 61.726 63.158 9.73 0.00 37.24 4.09
271 2840 1.392710 TAGGTCCTGCGCTAAGGCTC 61.393 60.000 9.73 4.73 37.24 4.70
272 2841 0.760945 ATAGGTCCTGCGCTAAGGCT 60.761 55.000 9.73 4.08 37.24 4.58
273 2842 0.106894 AATAGGTCCTGCGCTAAGGC 59.893 55.000 9.73 4.37 37.24 4.35
274 2843 1.689273 AGAATAGGTCCTGCGCTAAGG 59.311 52.381 9.73 8.44 38.84 2.69
275 2844 4.585955 TTAGAATAGGTCCTGCGCTAAG 57.414 45.455 9.73 0.00 0.00 2.18
276 2845 5.297547 CATTTAGAATAGGTCCTGCGCTAA 58.702 41.667 9.73 3.62 0.00 3.09
277 2846 4.799586 GCATTTAGAATAGGTCCTGCGCTA 60.800 45.833 9.73 0.00 0.00 4.26
278 2847 3.733337 CATTTAGAATAGGTCCTGCGCT 58.267 45.455 9.73 0.00 0.00 5.92
279 2848 2.224314 GCATTTAGAATAGGTCCTGCGC 59.776 50.000 0.00 0.00 0.00 6.09
280 2849 3.733337 AGCATTTAGAATAGGTCCTGCG 58.267 45.455 0.00 0.00 33.76 5.18
281 2850 6.536941 GCTATAGCATTTAGAATAGGTCCTGC 59.463 42.308 20.01 0.00 41.59 4.85
303 2872 1.895798 AGCTCCGCTATAGCAATGCTA 59.104 47.619 24.43 17.97 45.55 3.49
304 2873 0.683973 AGCTCCGCTATAGCAATGCT 59.316 50.000 23.99 22.74 42.62 3.79
305 2874 2.370281 TAGCTCCGCTATAGCAATGC 57.630 50.000 23.99 21.11 42.62 3.56
314 2883 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
315 2884 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
316 2885 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
317 2886 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
318 2887 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
319 2888 5.121925 GGTTTTAAATAGCCCGCTATAGCTC 59.878 44.000 21.98 11.04 40.56 4.09
320 2889 5.001874 GGTTTTAAATAGCCCGCTATAGCT 58.998 41.667 21.98 6.31 43.20 3.32
321 2890 4.758165 TGGTTTTAAATAGCCCGCTATAGC 59.242 41.667 15.09 15.09 38.20 2.97
322 2891 6.653320 TCATGGTTTTAAATAGCCCGCTATAG 59.347 38.462 9.56 0.00 38.20 1.31
323 2892 6.535540 TCATGGTTTTAAATAGCCCGCTATA 58.464 36.000 9.56 0.00 38.20 1.31
324 2893 5.381757 TCATGGTTTTAAATAGCCCGCTAT 58.618 37.500 3.31 3.31 40.63 2.97
325 2894 4.783055 TCATGGTTTTAAATAGCCCGCTA 58.217 39.130 0.00 0.00 0.00 4.26
326 2895 3.626930 TCATGGTTTTAAATAGCCCGCT 58.373 40.909 0.00 0.00 0.00 5.52
327 2896 4.584327 ATCATGGTTTTAAATAGCCCGC 57.416 40.909 0.00 0.00 0.00 6.13
328 2897 6.485313 TCACTATCATGGTTTTAAATAGCCCG 59.515 38.462 0.00 0.00 0.00 6.13
329 2898 7.817418 TCACTATCATGGTTTTAAATAGCCC 57.183 36.000 0.00 0.00 0.00 5.19
330 2899 9.899226 GAATCACTATCATGGTTTTAAATAGCC 57.101 33.333 0.00 0.00 0.00 3.93
334 2903 8.970020 TGCTGAATCACTATCATGGTTTTAAAT 58.030 29.630 0.00 0.00 0.00 1.40
335 2904 8.347004 TGCTGAATCACTATCATGGTTTTAAA 57.653 30.769 0.00 0.00 0.00 1.52
336 2905 7.936496 TGCTGAATCACTATCATGGTTTTAA 57.064 32.000 0.00 0.00 0.00 1.52
337 2906 7.936496 TTGCTGAATCACTATCATGGTTTTA 57.064 32.000 0.00 0.00 0.00 1.52
338 2907 6.839124 TTGCTGAATCACTATCATGGTTTT 57.161 33.333 0.00 0.00 0.00 2.43
339 2908 7.123098 TGAATTGCTGAATCACTATCATGGTTT 59.877 33.333 0.00 0.00 0.00 3.27
340 2909 6.604396 TGAATTGCTGAATCACTATCATGGTT 59.396 34.615 0.00 0.00 0.00 3.67
341 2910 6.124340 TGAATTGCTGAATCACTATCATGGT 58.876 36.000 0.00 0.00 0.00 3.55
342 2911 6.294010 CCTGAATTGCTGAATCACTATCATGG 60.294 42.308 0.00 0.00 0.00 3.66
343 2912 6.485648 TCCTGAATTGCTGAATCACTATCATG 59.514 38.462 0.00 0.00 0.00 3.07
344 2913 6.598503 TCCTGAATTGCTGAATCACTATCAT 58.401 36.000 0.00 0.00 0.00 2.45
345 2914 5.993055 TCCTGAATTGCTGAATCACTATCA 58.007 37.500 0.00 0.00 0.00 2.15
346 2915 6.765036 TCTTCCTGAATTGCTGAATCACTATC 59.235 38.462 0.00 0.00 0.00 2.08
350 2919 5.831702 ATCTTCCTGAATTGCTGAATCAC 57.168 39.130 0.00 0.00 0.00 3.06
355 2924 5.319453 ACTTGAATCTTCCTGAATTGCTGA 58.681 37.500 0.00 0.00 0.00 4.26
421 2990 4.494484 AGTTTGTTGCAGGTTTTGTTCTC 58.506 39.130 0.00 0.00 0.00 2.87
424 2993 5.355467 CAAAGTTTGTTGCAGGTTTTGTT 57.645 34.783 7.48 0.00 0.00 2.83
437 3006 2.590821 AGATCCTGCAGCAAAGTTTGT 58.409 42.857 16.70 1.59 0.00 2.83
467 3037 1.718711 CCTTGCAACGCGGTTAAATTG 59.281 47.619 12.47 5.71 0.00 2.32
473 3043 0.173708 TTTTTCCTTGCAACGCGGTT 59.826 45.000 12.47 0.00 0.00 4.44
506 3077 1.264826 TCTTTACGGCCTTGCGAAAAC 59.735 47.619 0.00 0.00 0.00 2.43
511 3082 0.802494 AATGTCTTTACGGCCTTGCG 59.198 50.000 0.00 0.00 0.00 4.85
554 3126 9.305555 TGATATCATGTGACTCATCAGATAAGA 57.694 33.333 0.00 0.00 36.72 2.10
595 3168 7.548075 AGAATACACTAGTGAAAATTGGGTACG 59.452 37.037 29.30 0.00 26.96 3.67
777 3359 4.808364 GCTTGCTCTCAAATGGAGTAGTAG 59.192 45.833 0.00 0.00 44.40 2.57
875 3457 2.080286 AACGAGGTTGGATCTTGACG 57.920 50.000 0.00 0.00 0.00 4.35
1355 3956 6.916401 CGCATTCGCATATTCATATGTTTT 57.084 33.333 1.90 0.00 41.63 2.43
1528 4142 4.045636 ACTGTTTTTCATGAAGTGGCAC 57.954 40.909 10.29 10.29 0.00 5.01
1634 4276 7.330946 TGAACAGACTAATTAACCACTCAATCG 59.669 37.037 0.00 0.00 0.00 3.34
1724 4366 3.181500 GGACACGAAAGAATACCATTGGC 60.181 47.826 1.54 0.00 0.00 4.52
2519 5171 0.998145 AAGGAGCTCCAGCCATTTCT 59.002 50.000 33.90 7.59 43.38 2.52
2557 5218 5.178797 TCTTTTTCCTCTGCTCCTTATTCG 58.821 41.667 0.00 0.00 0.00 3.34
2642 5303 1.269448 GCGATGATCTCCTCCTCTGTC 59.731 57.143 0.00 0.00 0.00 3.51
2911 5572 2.359169 GGTGCGGAGGAGGATGACA 61.359 63.158 0.00 0.00 0.00 3.58
2959 5620 2.775856 TTTGCTTTTGACGGCGGCA 61.776 52.632 13.60 13.60 0.00 5.69
3285 5961 6.021030 TCACTACTACCTTAGTGGACCATTT 58.979 40.000 0.00 0.00 46.21 2.32
3307 5983 1.957668 CATCACCGCCAATGATCTCA 58.042 50.000 0.00 0.00 34.49 3.27
3365 6041 2.079925 GACATCTGTTGAAGCAGGTCC 58.920 52.381 0.00 0.00 37.12 4.46
3534 6214 9.209175 GCTATCAACATTAACGAAGATTCCTAT 57.791 33.333 0.00 0.00 0.00 2.57
4008 6767 4.392754 TGCAGCAGTATTGACAATAGTGTG 59.607 41.667 30.33 26.75 43.55 3.82
4021 6780 1.153489 CGAGCACCTGCAGCAGTAT 60.153 57.895 21.26 6.12 45.16 2.12
4072 6831 5.428253 TGTAGATTCGGGAATTCCTTCTTG 58.572 41.667 23.63 9.20 35.95 3.02
4157 8318 3.731431 TGCCTAGGATGGGAAGAAGTAA 58.269 45.455 14.75 0.00 40.53 2.24
4268 8429 1.606668 CTCGATCTCTTCCTTCTCCCG 59.393 57.143 0.00 0.00 0.00 5.14
4375 8536 2.076863 AGTGGTAAGTTTCATCGCTGC 58.923 47.619 0.00 0.00 0.00 5.25
4551 8712 0.389037 TCTCAGCAGTGTCACGCATC 60.389 55.000 17.80 1.92 0.00 3.91
4618 8779 0.033699 ATTTCTGAGCCTTGGCCCTC 60.034 55.000 8.17 0.00 0.00 4.30
4770 8954 1.250476 GCGTCAATGCGTGAAACATC 58.750 50.000 0.00 0.00 38.23 3.06
4789 8981 9.492973 AAAATCAAAGTAAGGAAATGTTGATGG 57.507 29.630 0.00 0.00 36.21 3.51
4931 9125 3.305516 GCCCCTGCCTTGTGGTTG 61.306 66.667 0.00 0.00 35.27 3.77
4934 9128 3.933048 CTCAGCCCCTGCCTTGTGG 62.933 68.421 0.00 0.00 38.69 4.17
4984 9178 9.415544 CTAAACGGTACTACTGAAATGTTAACT 57.584 33.333 7.22 0.00 0.00 2.24
4985 9179 8.164790 GCTAAACGGTACTACTGAAATGTTAAC 58.835 37.037 0.00 0.00 0.00 2.01
4995 9204 3.370061 GCCTTTGCTAAACGGTACTACTG 59.630 47.826 0.00 0.00 33.53 2.74
5004 9213 2.548057 TCTCTGTTGCCTTTGCTAAACG 59.452 45.455 0.00 0.00 38.71 3.60
5005 9214 3.315191 TGTCTCTGTTGCCTTTGCTAAAC 59.685 43.478 0.00 0.00 38.71 2.01
5009 9218 2.057137 TTGTCTCTGTTGCCTTTGCT 57.943 45.000 0.00 0.00 38.71 3.91
5021 9230 2.684881 CAACACTGGCTTGTTTGTCTCT 59.315 45.455 2.76 0.00 37.62 3.10
5024 9233 1.135141 TGCAACACTGGCTTGTTTGTC 60.135 47.619 2.76 0.00 37.62 3.18
5025 9234 0.894141 TGCAACACTGGCTTGTTTGT 59.106 45.000 2.76 0.00 37.62 2.83
5026 9235 2.228138 ATGCAACACTGGCTTGTTTG 57.772 45.000 0.00 3.37 37.62 2.93
5027 9236 2.553086 CAATGCAACACTGGCTTGTTT 58.447 42.857 0.00 0.00 37.62 2.83
5029 9238 0.249573 GCAATGCAACACTGGCTTGT 60.250 50.000 0.00 0.00 0.00 3.16
5030 9239 0.249531 TGCAATGCAACACTGGCTTG 60.250 50.000 5.01 0.00 34.76 4.01
5031 9240 0.464870 TTGCAATGCAACACTGGCTT 59.535 45.000 17.55 0.00 43.99 4.35
5032 9241 0.032952 CTTGCAATGCAACACTGGCT 59.967 50.000 17.55 0.00 43.99 4.75
5033 9242 0.249573 ACTTGCAATGCAACACTGGC 60.250 50.000 17.55 0.00 43.99 4.85
5034 9243 2.034432 TGTACTTGCAATGCAACACTGG 59.966 45.455 17.55 9.50 43.99 4.00
5035 9244 3.302555 CTGTACTTGCAATGCAACACTG 58.697 45.455 17.55 16.12 43.99 3.66
5037 9246 2.607771 CCCTGTACTTGCAATGCAACAC 60.608 50.000 17.55 16.99 43.99 3.32
5038 9247 1.612950 CCCTGTACTTGCAATGCAACA 59.387 47.619 17.55 13.46 43.99 3.33
5039 9248 1.067635 CCCCTGTACTTGCAATGCAAC 60.068 52.381 17.55 9.11 43.99 4.17
5040 9249 1.255882 CCCCTGTACTTGCAATGCAA 58.744 50.000 20.22 20.22 46.80 4.08
5041 9250 1.250154 GCCCCTGTACTTGCAATGCA 61.250 55.000 2.72 2.72 36.47 3.96
5044 9260 1.616994 GGAAGCCCCTGTACTTGCAAT 60.617 52.381 0.00 0.00 34.68 3.56
5056 9272 2.437413 CTTCTGTGTTTAGGAAGCCCC 58.563 52.381 0.00 0.00 31.73 5.80
5063 9279 2.427506 GGTGGAGCTTCTGTGTTTAGG 58.572 52.381 0.00 0.00 0.00 2.69
5065 9281 1.270625 CCGGTGGAGCTTCTGTGTTTA 60.271 52.381 0.00 0.00 0.00 2.01
5069 9285 1.669115 CACCGGTGGAGCTTCTGTG 60.669 63.158 27.57 0.00 0.00 3.66
5075 9291 2.769663 TGTTTATATCACCGGTGGAGCT 59.230 45.455 33.40 17.94 0.00 4.09
5083 9299 5.179368 GGGATGTGTCATGTTTATATCACCG 59.821 44.000 0.00 0.00 0.00 4.94
5087 9303 6.533730 TCTGGGGATGTGTCATGTTTATATC 58.466 40.000 0.00 0.00 0.00 1.63
5092 9308 2.376518 ACTCTGGGGATGTGTCATGTTT 59.623 45.455 0.00 0.00 0.00 2.83
5094 9310 1.661463 ACTCTGGGGATGTGTCATGT 58.339 50.000 0.00 0.00 0.00 3.21
5095 9311 2.768527 ACTACTCTGGGGATGTGTCATG 59.231 50.000 0.00 0.00 0.00 3.07
5100 9321 5.614324 TCATAAACTACTCTGGGGATGTG 57.386 43.478 0.00 0.00 0.00 3.21
5102 9323 6.240549 AGTTCATAAACTACTCTGGGGATG 57.759 41.667 0.00 0.00 43.98 3.51
5105 9326 7.419711 TCTTAGTTCATAAACTACTCTGGGG 57.580 40.000 0.00 0.00 45.43 4.96
5109 9330 8.345724 TCCGTTCTTAGTTCATAAACTACTCT 57.654 34.615 0.00 0.00 45.43 3.24
5110 9331 9.583765 AATCCGTTCTTAGTTCATAAACTACTC 57.416 33.333 0.00 0.00 45.43 2.59
5137 9358 6.374565 CATTTGGTGCCATTTTCTCAAAAA 57.625 33.333 0.00 0.00 38.66 1.94
5154 9375 6.039717 ACATGGTACTTATAAGCTGCATTTGG 59.960 38.462 12.54 0.00 0.00 3.28
5178 9399 5.164954 TGGCCATCTTTTGCGTTAATTTAC 58.835 37.500 0.00 0.00 0.00 2.01
5188 9409 0.968405 TTCACCTGGCCATCTTTTGC 59.032 50.000 5.51 0.00 0.00 3.68
5191 9412 2.181975 CCATTTCACCTGGCCATCTTT 58.818 47.619 5.51 0.00 0.00 2.52
5193 9414 0.032813 CCCATTTCACCTGGCCATCT 60.033 55.000 5.51 0.00 32.08 2.90
5194 9415 0.324645 ACCCATTTCACCTGGCCATC 60.325 55.000 5.51 0.00 32.08 3.51
5196 9417 1.006813 ATACCCATTTCACCTGGCCA 58.993 50.000 4.71 4.71 32.08 5.36
5198 9419 2.733956 TCAATACCCATTTCACCTGGC 58.266 47.619 0.00 0.00 32.08 4.85
5199 9420 4.085733 TGTTCAATACCCATTTCACCTGG 58.914 43.478 0.00 0.00 0.00 4.45
5208 9429 6.933514 ATGGAAACTTTGTTCAATACCCAT 57.066 33.333 0.00 0.00 0.00 4.00
5228 9449 3.637229 AGTTCACTCGGGTACTGATATGG 59.363 47.826 0.00 0.00 45.89 2.74
5239 9460 0.310854 GGTTTTGCAGTTCACTCGGG 59.689 55.000 0.00 0.00 0.00 5.14
5240 9461 0.041312 CGGTTTTGCAGTTCACTCGG 60.041 55.000 0.00 0.00 0.00 4.63
5241 9462 0.655733 ACGGTTTTGCAGTTCACTCG 59.344 50.000 0.00 0.00 0.00 4.18
5251 9475 1.519408 TGAAGCTAGGACGGTTTTGC 58.481 50.000 0.00 0.00 0.00 3.68
5259 9483 4.335874 TCTTACACGAGATGAAGCTAGGAC 59.664 45.833 0.00 0.00 0.00 3.85
5261 9485 4.902443 TCTTACACGAGATGAAGCTAGG 57.098 45.455 0.00 0.00 0.00 3.02
5265 9489 5.847670 AACTTTCTTACACGAGATGAAGC 57.152 39.130 0.00 0.00 0.00 3.86
5280 9504 7.961326 ATCAGGGCACATAAATTAACTTTCT 57.039 32.000 0.00 0.00 0.00 2.52
5293 9517 3.202818 TGTGGAATAGAATCAGGGCACAT 59.797 43.478 0.00 0.00 0.00 3.21
5299 9523 3.567164 GGCATGTGTGGAATAGAATCAGG 59.433 47.826 0.00 0.00 0.00 3.86
5300 9524 4.458397 AGGCATGTGTGGAATAGAATCAG 58.542 43.478 0.00 0.00 0.00 2.90
5315 9539 9.094578 AGTACTGTATATGAAATAGAGGCATGT 57.905 33.333 0.00 0.00 28.50 3.21
5327 9551 5.057843 ACGGAGGGAGTACTGTATATGAA 57.942 43.478 0.00 0.00 0.00 2.57
5335 9559 2.833631 AACAAACGGAGGGAGTACTG 57.166 50.000 0.00 0.00 0.00 2.74
5336 9560 3.851458 AAAACAAACGGAGGGAGTACT 57.149 42.857 0.00 0.00 0.00 2.73
5337 9561 7.603784 TCTTATAAAAACAAACGGAGGGAGTAC 59.396 37.037 0.00 0.00 0.00 2.73
5338 9562 7.603784 GTCTTATAAAAACAAACGGAGGGAGTA 59.396 37.037 0.00 0.00 0.00 2.59
5339 9563 6.429078 GTCTTATAAAAACAAACGGAGGGAGT 59.571 38.462 0.00 0.00 0.00 3.85
5340 9564 6.401796 CGTCTTATAAAAACAAACGGAGGGAG 60.402 42.308 0.00 0.00 0.00 4.30
5341 9565 5.409214 CGTCTTATAAAAACAAACGGAGGGA 59.591 40.000 0.00 0.00 0.00 4.20
5342 9566 5.179929 ACGTCTTATAAAAACAAACGGAGGG 59.820 40.000 0.00 0.00 33.26 4.30
5343 9567 6.232139 ACGTCTTATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
5344 9568 7.346695 TGAACGTCTTATAAAAACAAACGGAG 58.653 34.615 0.00 0.00 33.26 4.63
5345 9569 7.224362 TCTGAACGTCTTATAAAAACAAACGGA 59.776 33.333 0.00 0.00 33.26 4.69
5346 9570 7.346695 TCTGAACGTCTTATAAAAACAAACGG 58.653 34.615 0.00 0.00 33.26 4.44
5347 9571 8.060090 ACTCTGAACGTCTTATAAAAACAAACG 58.940 33.333 0.00 0.00 35.00 3.60
5348 9572 9.712359 AACTCTGAACGTCTTATAAAAACAAAC 57.288 29.630 0.00 0.00 0.00 2.93
5349 9573 9.925268 GAACTCTGAACGTCTTATAAAAACAAA 57.075 29.630 0.00 0.00 0.00 2.83
5350 9574 9.100554 TGAACTCTGAACGTCTTATAAAAACAA 57.899 29.630 0.00 0.00 0.00 2.83
5351 9575 8.651391 TGAACTCTGAACGTCTTATAAAAACA 57.349 30.769 0.00 0.00 0.00 2.83
5352 9576 8.975439 TCTGAACTCTGAACGTCTTATAAAAAC 58.025 33.333 0.00 0.00 0.00 2.43
5353 9577 8.975439 GTCTGAACTCTGAACGTCTTATAAAAA 58.025 33.333 0.00 0.00 0.00 1.94
5354 9578 8.139350 TGTCTGAACTCTGAACGTCTTATAAAA 58.861 33.333 0.00 0.00 0.00 1.52
5355 9579 7.654568 TGTCTGAACTCTGAACGTCTTATAAA 58.345 34.615 0.00 0.00 0.00 1.40
5356 9580 7.210718 TGTCTGAACTCTGAACGTCTTATAA 57.789 36.000 0.00 0.00 0.00 0.98
5357 9581 6.812879 TGTCTGAACTCTGAACGTCTTATA 57.187 37.500 0.00 0.00 0.00 0.98
5358 9582 5.707242 TGTCTGAACTCTGAACGTCTTAT 57.293 39.130 0.00 0.00 0.00 1.73
5359 9583 5.067413 AGTTGTCTGAACTCTGAACGTCTTA 59.933 40.000 0.00 0.00 0.00 2.10
5360 9584 4.113354 GTTGTCTGAACTCTGAACGTCTT 58.887 43.478 0.00 0.00 0.00 3.01
5361 9585 3.381908 AGTTGTCTGAACTCTGAACGTCT 59.618 43.478 0.00 0.00 0.00 4.18
5362 9586 3.707793 AGTTGTCTGAACTCTGAACGTC 58.292 45.455 0.00 0.00 0.00 4.34
5363 9587 3.802948 AGTTGTCTGAACTCTGAACGT 57.197 42.857 0.00 0.00 0.00 3.99
5364 9588 3.302740 GCAAGTTGTCTGAACTCTGAACG 60.303 47.826 4.48 0.00 0.00 3.95
5365 9589 3.873952 AGCAAGTTGTCTGAACTCTGAAC 59.126 43.478 4.48 0.00 0.00 3.18
5366 9590 4.142609 AGCAAGTTGTCTGAACTCTGAA 57.857 40.909 4.48 0.00 0.00 3.02
5367 9591 3.827008 AGCAAGTTGTCTGAACTCTGA 57.173 42.857 4.48 0.00 0.00 3.27
5368 9592 4.095483 ACAAAGCAAGTTGTCTGAACTCTG 59.905 41.667 4.48 0.00 37.10 3.35
5369 9593 4.095483 CACAAAGCAAGTTGTCTGAACTCT 59.905 41.667 4.48 0.00 39.73 3.24
5370 9594 4.346129 CACAAAGCAAGTTGTCTGAACTC 58.654 43.478 4.48 0.00 39.73 3.01
5371 9595 3.428045 GCACAAAGCAAGTTGTCTGAACT 60.428 43.478 4.48 0.00 44.79 3.01
5372 9596 2.854185 GCACAAAGCAAGTTGTCTGAAC 59.146 45.455 4.48 0.00 44.79 3.18
5373 9597 3.149436 GCACAAAGCAAGTTGTCTGAA 57.851 42.857 4.48 0.00 44.79 3.02
5374 9598 2.849880 GCACAAAGCAAGTTGTCTGA 57.150 45.000 4.48 0.00 44.79 3.27
5379 9603 9.565596 TGTTCAAAAACAGCACAAAGCAAGTTG 62.566 37.037 0.00 0.00 41.07 3.16
5380 9604 7.672933 TGTTCAAAAACAGCACAAAGCAAGTT 61.673 34.615 0.00 0.00 42.87 2.66
5381 9605 6.253117 TGTTCAAAAACAGCACAAAGCAAGT 61.253 36.000 0.00 0.00 40.45 3.16
5382 9606 4.152045 TGTTCAAAAACAGCACAAAGCAAG 59.848 37.500 0.00 0.00 40.45 4.01
5383 9607 4.060900 TGTTCAAAAACAGCACAAAGCAA 58.939 34.783 0.00 0.00 40.45 3.91
5384 9608 3.657634 TGTTCAAAAACAGCACAAAGCA 58.342 36.364 0.00 0.00 40.45 3.91
5394 9618 6.206634 AGACTTTCAGACACTGTTCAAAAACA 59.793 34.615 0.00 0.00 43.06 2.83
5395 9619 6.612306 AGACTTTCAGACACTGTTCAAAAAC 58.388 36.000 0.00 0.00 35.85 2.43
5396 9620 6.817765 AGACTTTCAGACACTGTTCAAAAA 57.182 33.333 0.00 0.00 32.61 1.94
5397 9621 7.915293 TTAGACTTTCAGACACTGTTCAAAA 57.085 32.000 0.00 0.00 32.61 2.44
5398 9622 7.915293 TTTAGACTTTCAGACACTGTTCAAA 57.085 32.000 0.00 0.00 32.61 2.69
5399 9623 7.412563 CGTTTTAGACTTTCAGACACTGTTCAA 60.413 37.037 0.00 0.00 32.61 2.69
5400 9624 6.035650 CGTTTTAGACTTTCAGACACTGTTCA 59.964 38.462 0.00 0.00 32.61 3.18
5401 9625 6.035758 ACGTTTTAGACTTTCAGACACTGTTC 59.964 38.462 0.00 0.00 32.61 3.18
5402 9626 5.873164 ACGTTTTAGACTTTCAGACACTGTT 59.127 36.000 0.00 0.00 32.61 3.16
5403 9627 5.416947 ACGTTTTAGACTTTCAGACACTGT 58.583 37.500 0.00 0.00 32.61 3.55
5404 9628 5.749109 AGACGTTTTAGACTTTCAGACACTG 59.251 40.000 0.00 0.00 0.00 3.66
5405 9629 5.903810 AGACGTTTTAGACTTTCAGACACT 58.096 37.500 0.00 0.00 0.00 3.55
5406 9630 6.585389 AAGACGTTTTAGACTTTCAGACAC 57.415 37.500 0.00 0.00 0.00 3.67
5407 9631 9.970395 TTATAAGACGTTTTAGACTTTCAGACA 57.030 29.630 4.75 0.00 0.00 3.41
5439 9663 9.762933 TGTTTATTAAAACGTACTACCTCTGTT 57.237 29.630 0.00 0.00 46.63 3.16
5440 9664 9.196552 GTGTTTATTAAAACGTACTACCTCTGT 57.803 33.333 0.00 0.00 46.63 3.41
5441 9665 9.195411 TGTGTTTATTAAAACGTACTACCTCTG 57.805 33.333 0.00 0.00 46.63 3.35
5442 9666 9.933723 ATGTGTTTATTAAAACGTACTACCTCT 57.066 29.630 0.00 0.00 46.63 3.69
5444 9668 9.709495 TGATGTGTTTATTAAAACGTACTACCT 57.291 29.630 0.00 0.00 46.63 3.08
5448 9672 9.005777 ACCATGATGTGTTTATTAAAACGTACT 57.994 29.630 0.00 0.00 46.63 2.73
5489 9713 4.775780 ACAGTACTTGCATACCCTGTTCTA 59.224 41.667 0.00 0.00 0.00 2.10
5505 9729 7.060383 AGCATAGATAGATTTGCACAGTACT 57.940 36.000 0.00 0.00 37.56 2.73
5535 9759 4.021925 AGACCCTGCCCGCACTTC 62.022 66.667 0.00 0.00 0.00 3.01
5574 9798 4.366684 CCAACCCAGGTGCCTCCC 62.367 72.222 0.00 0.00 36.75 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.