Multiple sequence alignment - TraesCS7A01G040600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G040600 chr7A 100.000 3053 0 0 1 3053 18876189 18873137 0.000000e+00 5638.0
1 TraesCS7A01G040600 chrUn 88.089 2166 159 46 664 2784 50833946 50831835 0.000000e+00 2479.0
2 TraesCS7A01G040600 chrUn 83.562 365 41 11 1962 2319 50797711 50797359 1.060000e-84 324.0
3 TraesCS7A01G040600 chrUn 83.562 365 41 11 1962 2319 355087579 355087227 1.060000e-84 324.0
4 TraesCS7A01G040600 chrUn 83.562 365 41 11 1962 2319 413652537 413652185 1.060000e-84 324.0
5 TraesCS7A01G040600 chrUn 86.395 294 31 6 336 625 50834620 50834332 2.290000e-81 313.0
6 TraesCS7A01G040600 chrUn 91.724 145 11 1 1 145 50835044 50834901 1.860000e-47 200.0
7 TraesCS7A01G040600 chrUn 81.651 218 20 9 138 335 50834877 50834660 2.440000e-36 163.0
8 TraesCS7A01G040600 chr7D 91.287 1274 61 12 663 1906 18426594 18425341 0.000000e+00 1692.0
9 TraesCS7A01G040600 chr7D 81.796 824 85 28 1967 2784 18425323 18424559 5.560000e-177 630.0
10 TraesCS7A01G040600 chr7D 84.670 424 35 14 1924 2337 18410009 18409606 2.210000e-106 396.0
11 TraesCS7A01G040600 chr7D 93.596 203 13 0 2570 2772 18409507 18409305 1.380000e-78 303.0
12 TraesCS7A01G040600 chr7D 93.103 145 9 1 1 145 18427237 18427094 8.580000e-51 211.0
13 TraesCS7A01G040600 chr7D 91.200 125 11 0 376 500 18426895 18426771 1.460000e-38 171.0
14 TraesCS7A01G040600 chr7D 82.123 179 11 5 135 292 18427071 18426893 1.910000e-27 134.0
15 TraesCS7A01G040600 chr3B 79.085 153 27 5 454 603 761039779 761039629 1.940000e-17 100.0
16 TraesCS7A01G040600 chr1D 80.000 140 23 5 461 598 371703465 371703329 6.970000e-17 99.0
17 TraesCS7A01G040600 chr1D 84.783 92 13 1 508 598 219476114 219476205 1.170000e-14 91.6
18 TraesCS7A01G040600 chr6B 80.645 124 22 2 481 602 156411729 156411606 9.010000e-16 95.3
19 TraesCS7A01G040600 chr6D 85.556 90 11 2 469 558 219760330 219760417 3.240000e-15 93.5
20 TraesCS7A01G040600 chr5B 78.231 147 28 4 456 599 573044563 573044418 1.170000e-14 91.6
21 TraesCS7A01G040600 chr5D 78.195 133 25 4 454 585 280303926 280303797 7.020000e-12 82.4
22 TraesCS7A01G040600 chr4A 78.571 126 26 1 479 603 597685042 597684917 7.020000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G040600 chr7A 18873137 18876189 3052 True 5638.00 5638 100.00000 1 3053 1 chr7A.!!$R1 3052
1 TraesCS7A01G040600 chrUn 50831835 50835044 3209 True 788.75 2479 86.96475 1 2784 4 chrUn.!!$R4 2783
2 TraesCS7A01G040600 chr7D 18424559 18427237 2678 True 567.60 1692 87.90180 1 2784 5 chr7D.!!$R2 2783
3 TraesCS7A01G040600 chr7D 18409305 18410009 704 True 349.50 396 89.13300 1924 2772 2 chr7D.!!$R1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 345 0.399233 GGCTCTGGGAGGGTCAGTAT 60.399 60.0 0.0 0.0 34.15 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2577 0.108207 AGCATCAGCATGGTAGGAGC 59.892 55.0 0.0 0.0 45.49 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.196254 CCATAAAGTGCAGCCCTCAATTT 59.804 43.478 0.00 2.42 36.06 1.82
51 52 0.893727 ACCCATTTGTCCACTTCGCC 60.894 55.000 0.00 0.00 0.00 5.54
52 53 1.501741 CCATTTGTCCACTTCGCCG 59.498 57.895 0.00 0.00 0.00 6.46
106 107 4.582701 TCACCAATTTCGACAAATGCTT 57.417 36.364 0.00 0.00 32.18 3.91
126 127 4.085107 GCTTACATTTTCGTTGCCAACTTG 60.085 41.667 5.96 0.00 0.00 3.16
209 244 1.735571 GTTCGTTATCCGGCAACATGT 59.264 47.619 16.10 0.00 37.11 3.21
214 249 2.502213 TATCCGGCAACATGTAGACG 57.498 50.000 0.00 3.80 0.00 4.18
224 259 1.079621 ATGTAGACGGGTGGGGTGA 59.920 57.895 0.00 0.00 0.00 4.02
238 292 2.280552 GGTGACCGTGACTGGGCTA 61.281 63.158 1.37 0.00 38.15 3.93
277 331 3.222855 CGGGAGATCTGCGGCTCT 61.223 66.667 8.26 0.00 0.00 4.09
279 333 2.420890 GGAGATCTGCGGCTCTGG 59.579 66.667 3.02 0.00 0.00 3.86
288 342 3.465403 CGGCTCTGGGAGGGTCAG 61.465 72.222 0.00 0.00 0.00 3.51
289 343 2.284995 GGCTCTGGGAGGGTCAGT 60.285 66.667 0.00 0.00 34.15 3.41
290 344 1.001760 GGCTCTGGGAGGGTCAGTA 59.998 63.158 0.00 0.00 34.15 2.74
291 345 0.399233 GGCTCTGGGAGGGTCAGTAT 60.399 60.000 0.00 0.00 34.15 2.12
292 346 1.044611 GCTCTGGGAGGGTCAGTATC 58.955 60.000 0.00 0.00 34.15 2.24
293 347 1.689575 GCTCTGGGAGGGTCAGTATCA 60.690 57.143 0.00 0.00 34.15 2.15
294 348 2.969628 CTCTGGGAGGGTCAGTATCAT 58.030 52.381 0.00 0.00 34.15 2.45
296 350 3.041211 TCTGGGAGGGTCAGTATCATTG 58.959 50.000 0.00 0.00 34.15 2.82
308 363 4.726317 TCAGTATCATTGGATGGGGAAGAA 59.274 41.667 0.00 0.00 34.89 2.52
309 364 5.193527 TCAGTATCATTGGATGGGGAAGAAA 59.806 40.000 0.00 0.00 34.89 2.52
311 366 6.552350 CAGTATCATTGGATGGGGAAGAAAAT 59.448 38.462 0.00 0.00 34.89 1.82
323 378 3.117851 GGGAAGAAAATGGGGGAGACTAG 60.118 52.174 0.00 0.00 0.00 2.57
331 386 8.661345 AGAAAATGGGGGAGACTAGAATATAAC 58.339 37.037 0.00 0.00 0.00 1.89
409 503 3.390175 CCAGAGAGGGGAGACTAGAAA 57.610 52.381 0.00 0.00 0.00 2.52
411 505 3.704061 CCAGAGAGGGGAGACTAGAAAAG 59.296 52.174 0.00 0.00 0.00 2.27
440 534 4.988540 TCTCTTAACTTCACACATCAACCG 59.011 41.667 0.00 0.00 0.00 4.44
453 547 2.363788 TCAACCGTCTATGTCAGCAC 57.636 50.000 0.00 0.00 0.00 4.40
462 556 2.036604 TCTATGTCAGCACGAACCAACA 59.963 45.455 0.00 0.00 0.00 3.33
504 604 6.949117 AGGACAATGATATCCTCAGCTTAT 57.051 37.500 0.00 0.00 41.83 1.73
521 621 6.437477 TCAGCTTATCAGAGTTCAAGTCCTAA 59.563 38.462 0.00 0.00 0.00 2.69
547 647 6.370718 ACTTGACATTGGTACTCGTATTTTCC 59.629 38.462 0.00 0.00 0.00 3.13
549 649 7.172868 TGACATTGGTACTCGTATTTTCCTA 57.827 36.000 0.00 0.00 0.00 2.94
582 682 0.798776 CTTGTGGCGATGTGTCTTCC 59.201 55.000 0.00 0.00 0.00 3.46
600 700 0.596577 CCGTGAGAAGAGACGTTCCA 59.403 55.000 0.00 0.00 33.66 3.53
603 703 2.095212 CGTGAGAAGAGACGTTCCATCA 60.095 50.000 0.00 0.00 0.00 3.07
605 705 4.499183 GTGAGAAGAGACGTTCCATCAAT 58.501 43.478 0.00 0.00 0.00 2.57
614 716 8.110860 AGAGACGTTCCATCAATAACAAAAAT 57.889 30.769 0.00 0.00 0.00 1.82
619 721 8.788806 ACGTTCCATCAATAACAAAAATGTCTA 58.211 29.630 0.00 0.00 0.00 2.59
625 727 9.702726 CATCAATAACAAAAATGTCTACTACGG 57.297 33.333 0.00 0.00 0.00 4.02
632 742 4.640789 AAATGTCTACTACGGAGCTCAG 57.359 45.455 17.19 14.86 0.00 3.35
633 743 3.562343 ATGTCTACTACGGAGCTCAGA 57.438 47.619 21.22 7.98 0.00 3.27
641 763 0.885196 ACGGAGCTCAGACTCAGTTC 59.115 55.000 21.22 0.00 41.47 3.01
652 774 1.216710 CTCAGTTCCTCGGAGGTGC 59.783 63.158 22.88 16.16 36.53 5.01
653 775 1.228894 TCAGTTCCTCGGAGGTGCT 60.229 57.895 22.88 17.95 36.53 4.40
656 778 2.035155 TTCCTCGGAGGTGCTCGA 59.965 61.111 22.88 0.06 36.53 4.04
657 779 1.379977 TTCCTCGGAGGTGCTCGAT 60.380 57.895 22.88 0.00 36.53 3.59
659 781 2.418910 CCTCGGAGGTGCTCGATGT 61.419 63.158 16.15 0.00 34.77 3.06
660 782 1.226802 CTCGGAGGTGCTCGATGTG 60.227 63.158 0.00 0.00 34.77 3.21
661 783 2.887568 CGGAGGTGCTCGATGTGC 60.888 66.667 0.00 0.00 0.00 4.57
662 784 2.887568 GGAGGTGCTCGATGTGCG 60.888 66.667 0.00 0.00 42.69 5.34
678 1139 5.562696 CGATGTGCGGGATTTATGCTAAAAT 60.563 40.000 0.00 0.00 36.03 1.82
685 1146 4.742438 GATTTATGCTAAAATCCGCCGA 57.258 40.909 11.20 0.00 39.10 5.54
692 1156 0.458889 TAAAATCCGCCGACGTCAGG 60.459 55.000 17.16 17.83 37.70 3.86
761 1232 3.552384 AGGTGCACGACGGGGAAA 61.552 61.111 11.45 0.00 0.00 3.13
766 1237 1.598685 GCACGACGGGGAAAGGAAA 60.599 57.895 0.00 0.00 0.00 3.13
767 1238 0.958876 GCACGACGGGGAAAGGAAAT 60.959 55.000 0.00 0.00 0.00 2.17
768 1239 1.084289 CACGACGGGGAAAGGAAATC 58.916 55.000 0.00 0.00 0.00 2.17
773 1246 2.945668 GACGGGGAAAGGAAATCATCAG 59.054 50.000 0.00 0.00 0.00 2.90
808 1285 2.136974 ACCCTAACTAAACCCACCCA 57.863 50.000 0.00 0.00 0.00 4.51
885 1378 2.305607 CCCCCAAACCCCTCGATCA 61.306 63.158 0.00 0.00 0.00 2.92
889 1382 1.064758 CCCAAACCCCTCGATCATCAA 60.065 52.381 0.00 0.00 0.00 2.57
892 1385 3.544684 CAAACCCCTCGATCATCAATCA 58.455 45.455 0.00 0.00 33.65 2.57
893 1386 3.931907 AACCCCTCGATCATCAATCAA 57.068 42.857 0.00 0.00 33.65 2.57
894 1387 4.443978 AACCCCTCGATCATCAATCAAT 57.556 40.909 0.00 0.00 33.65 2.57
895 1388 4.013267 ACCCCTCGATCATCAATCAATC 57.987 45.455 0.00 0.00 33.65 2.67
1221 1720 2.661566 CGACGTGCTGCAGTTCCTG 61.662 63.158 16.64 3.90 34.12 3.86
1223 1722 3.052082 CGTGCTGCAGTTCCTGGG 61.052 66.667 16.64 0.00 31.21 4.45
1485 1987 4.129148 GCCTTTCCGGAGCCCCAT 62.129 66.667 3.34 0.00 33.16 4.00
1497 1999 0.037326 AGCCCCATACGTATGCGATG 60.037 55.000 26.79 14.64 42.00 3.84
1740 2245 1.973281 AGCATTGCGTTGTGGGGAG 60.973 57.895 2.38 0.00 0.00 4.30
1750 2255 1.779061 TTGTGGGGAGAAGGAGGTGC 61.779 60.000 0.00 0.00 0.00 5.01
1786 2291 3.738982 CCAAATTTGGGGAAGAAACACC 58.261 45.455 26.87 0.00 44.70 4.16
1799 2304 2.887152 AGAAACACCCTGTTCTTGATGC 59.113 45.455 0.00 0.00 40.14 3.91
1800 2305 1.620822 AACACCCTGTTCTTGATGCC 58.379 50.000 0.00 0.00 35.27 4.40
1824 2329 1.159285 CACCTGCTTTCGCTGAATCA 58.841 50.000 0.00 0.00 37.28 2.57
1834 2339 3.401033 TCGCTGAATCAGAAGGTGAAA 57.599 42.857 15.38 0.00 39.19 2.69
1862 2367 2.692741 GGGGAGGAGGGACCAAGG 60.693 72.222 0.00 0.00 42.04 3.61
1863 2368 2.125225 GGGAGGAGGGACCAAGGT 59.875 66.667 0.00 0.00 42.04 3.50
1867 2378 0.688087 GAGGAGGGACCAAGGTCGAT 60.688 60.000 12.77 4.02 45.41 3.59
1875 2386 0.682852 ACCAAGGTCGATGTCGGAAA 59.317 50.000 2.25 0.00 40.29 3.13
1912 2423 1.910671 AGAGGCCACCGGTGTATTTTA 59.089 47.619 31.80 0.00 0.00 1.52
1917 2428 3.181452 GGCCACCGGTGTATTTTAGGATA 60.181 47.826 31.80 0.00 0.00 2.59
1921 2432 4.345837 CACCGGTGTATTTTAGGATAGGGA 59.654 45.833 26.95 0.00 0.00 4.20
1975 2488 2.232298 GAGAGCCTTGGAGGACCGTG 62.232 65.000 0.00 0.00 37.67 4.94
2061 2577 0.464870 AGCCTAGCTGATCTGCTGTG 59.535 55.000 30.80 22.78 43.87 3.66
2063 2579 0.464870 CCTAGCTGATCTGCTGTGCT 59.535 55.000 30.80 15.24 43.87 4.40
2065 2581 0.463204 TAGCTGATCTGCTGTGCTCC 59.537 55.000 30.80 0.08 43.87 4.70
2127 2665 7.290948 TGATGCTCTCCAATTCTTATCCTCTTA 59.709 37.037 0.00 0.00 0.00 2.10
2207 2745 5.885230 TGTTGATAGAAGCAGGAAACATG 57.115 39.130 0.00 0.00 0.00 3.21
2272 2817 5.324409 AGCTCAATTTTGAACCTGACCATA 58.676 37.500 0.00 0.00 36.64 2.74
2309 2854 4.682787 TCTATGCACTGTTATCGAGTTGG 58.317 43.478 0.00 0.00 0.00 3.77
2352 2897 7.715249 TGGACTTTGATTTCTACATATGTAGCC 59.285 37.037 30.28 22.42 45.69 3.93
2374 2919 2.283821 TGGCATTCAGGTTGGCCC 60.284 61.111 0.00 0.00 45.83 5.80
2376 2921 1.610379 GGCATTCAGGTTGGCCCTT 60.610 57.895 0.00 0.00 42.73 3.95
2391 2936 3.258123 TGGCCCTTCTTTATTTGCAGTTC 59.742 43.478 0.00 0.00 0.00 3.01
2395 2940 5.578336 GCCCTTCTTTATTTGCAGTTCATTC 59.422 40.000 0.00 0.00 0.00 2.67
2396 2941 5.801947 CCCTTCTTTATTTGCAGTTCATTCG 59.198 40.000 0.00 0.00 0.00 3.34
2398 2943 7.253422 CCTTCTTTATTTGCAGTTCATTCGAT 58.747 34.615 0.00 0.00 0.00 3.59
2399 2944 7.219535 CCTTCTTTATTTGCAGTTCATTCGATG 59.780 37.037 0.00 0.00 0.00 3.84
2401 2946 6.374053 TCTTTATTTGCAGTTCATTCGATGGA 59.626 34.615 0.00 0.00 0.00 3.41
2442 2988 2.717639 ATGTCGATTCCTTTCAGGGG 57.282 50.000 0.00 0.00 35.59 4.79
2466 3012 3.181451 CCAGCTGGCCTACTTCATTATCA 60.181 47.826 22.33 0.00 0.00 2.15
2473 3019 7.373617 TGGCCTACTTCATTATCATGTTCTA 57.626 36.000 3.32 0.00 0.00 2.10
2484 3030 6.918067 TTATCATGTTCTATGGGACGAGAT 57.082 37.500 0.00 1.17 0.00 2.75
2507 3053 6.573664 TCAAATTTACCACTGATGAGTTGG 57.426 37.500 0.00 0.56 0.00 3.77
2527 3073 7.506296 GTTGGAAACTCTTACAAACAACTTG 57.494 36.000 0.00 0.00 45.32 3.16
2528 3074 7.088272 GTTGGAAACTCTTACAAACAACTTGT 58.912 34.615 0.00 0.00 46.53 3.16
2529 3075 7.061789 GTTGGAAACTCTTACAAACAACTTGTG 59.938 37.037 0.00 0.00 45.39 3.33
2540 3086 4.525411 AACAACTTGTGCTACACGTAAC 57.475 40.909 0.00 0.00 37.14 2.50
2541 3087 3.788937 ACAACTTGTGCTACACGTAACT 58.211 40.909 0.00 0.00 37.14 2.24
2546 3092 4.980434 ACTTGTGCTACACGTAACTTACTG 59.020 41.667 0.00 0.00 37.14 2.74
2550 3096 4.383948 GTGCTACACGTAACTTACTGTTCC 59.616 45.833 0.00 3.73 39.89 3.62
2554 3100 5.464030 ACACGTAACTTACTGTTCCATCT 57.536 39.130 0.00 0.00 39.89 2.90
2558 3104 6.309737 CACGTAACTTACTGTTCCATCTAACC 59.690 42.308 0.00 0.00 39.89 2.85
2560 3106 7.095270 CGTAACTTACTGTTCCATCTAACCTT 58.905 38.462 0.00 0.00 39.89 3.50
2604 3150 6.149633 GCTGTTTATCCGGCCAATTAAATAG 58.850 40.000 2.24 11.30 0.00 1.73
2631 3177 4.471904 TCCTACTGTTTCAGGTATGCTG 57.528 45.455 1.90 0.00 35.51 4.41
2655 3201 2.207924 ACCCGCCCTGTATCGATCC 61.208 63.158 0.00 0.00 0.00 3.36
2677 3223 1.995376 AAACTCCCCATGCGAAAAGT 58.005 45.000 0.00 0.00 0.00 2.66
2678 3224 1.247567 AACTCCCCATGCGAAAAGTG 58.752 50.000 0.00 0.00 0.00 3.16
2787 3333 2.045926 CCTTCTGGGCTTGACCGG 60.046 66.667 0.00 0.00 40.62 5.28
2788 3334 2.750350 CTTCTGGGCTTGACCGGT 59.250 61.111 6.92 6.92 40.62 5.28
2789 3335 1.376037 CTTCTGGGCTTGACCGGTC 60.376 63.158 28.17 28.17 40.62 4.79
2790 3336 1.831652 CTTCTGGGCTTGACCGGTCT 61.832 60.000 33.39 0.00 40.62 3.85
2791 3337 2.046892 CTGGGCTTGACCGGTCTG 60.047 66.667 33.39 25.55 40.62 3.51
2792 3338 2.847234 TGGGCTTGACCGGTCTGT 60.847 61.111 33.39 0.00 40.62 3.41
2793 3339 2.397413 CTGGGCTTGACCGGTCTGTT 62.397 60.000 33.39 0.00 40.62 3.16
2794 3340 1.966451 GGGCTTGACCGGTCTGTTG 60.966 63.158 33.39 20.67 40.62 3.33
2795 3341 2.617274 GGCTTGACCGGTCTGTTGC 61.617 63.158 33.39 27.42 0.00 4.17
2796 3342 1.598130 GCTTGACCGGTCTGTTGCT 60.598 57.895 33.39 0.00 0.00 3.91
2797 3343 1.166531 GCTTGACCGGTCTGTTGCTT 61.167 55.000 33.39 0.00 0.00 3.91
2798 3344 0.588252 CTTGACCGGTCTGTTGCTTG 59.412 55.000 33.39 11.64 0.00 4.01
2799 3345 1.444119 TTGACCGGTCTGTTGCTTGC 61.444 55.000 33.39 5.88 0.00 4.01
2800 3346 2.954753 GACCGGTCTGTTGCTTGCG 61.955 63.158 27.64 0.00 0.00 4.85
2801 3347 3.726517 CCGGTCTGTTGCTTGCGG 61.727 66.667 0.00 0.00 0.00 5.69
2802 3348 2.972505 CGGTCTGTTGCTTGCGGT 60.973 61.111 0.00 0.00 0.00 5.68
2803 3349 2.542907 CGGTCTGTTGCTTGCGGTT 61.543 57.895 0.00 0.00 0.00 4.44
2804 3350 1.282875 GGTCTGTTGCTTGCGGTTC 59.717 57.895 0.00 0.00 0.00 3.62
2805 3351 1.444119 GGTCTGTTGCTTGCGGTTCA 61.444 55.000 0.00 0.00 0.00 3.18
2806 3352 0.593128 GTCTGTTGCTTGCGGTTCAT 59.407 50.000 0.00 0.00 0.00 2.57
2807 3353 0.592637 TCTGTTGCTTGCGGTTCATG 59.407 50.000 0.00 0.00 0.00 3.07
2808 3354 1.005294 CTGTTGCTTGCGGTTCATGC 61.005 55.000 0.00 0.00 43.74 4.06
2809 3355 2.082366 GTTGCTTGCGGTTCATGCG 61.082 57.895 0.00 0.00 45.68 4.73
2810 3356 3.266230 TTGCTTGCGGTTCATGCGG 62.266 57.895 0.00 0.00 45.68 5.69
2812 3358 4.817063 CTTGCGGTTCATGCGGCG 62.817 66.667 0.51 0.51 37.49 6.46
2828 3374 2.600173 CGCCAGGGCTTTTGGGAA 60.600 61.111 8.91 0.00 39.32 3.97
2829 3375 1.984026 CGCCAGGGCTTTTGGGAAT 60.984 57.895 8.91 0.00 39.32 3.01
2830 3376 1.598517 GCCAGGGCTTTTGGGAATG 59.401 57.895 2.30 0.00 36.19 2.67
2831 3377 1.194121 GCCAGGGCTTTTGGGAATGT 61.194 55.000 2.30 0.00 36.19 2.71
2832 3378 1.351076 CCAGGGCTTTTGGGAATGTT 58.649 50.000 0.00 0.00 31.87 2.71
2833 3379 1.002315 CCAGGGCTTTTGGGAATGTTG 59.998 52.381 0.00 0.00 31.87 3.33
2834 3380 0.686789 AGGGCTTTTGGGAATGTTGC 59.313 50.000 0.00 0.00 0.00 4.17
2835 3381 0.686789 GGGCTTTTGGGAATGTTGCT 59.313 50.000 0.00 0.00 0.00 3.91
2836 3382 1.608801 GGGCTTTTGGGAATGTTGCTG 60.609 52.381 0.00 0.00 0.00 4.41
2837 3383 1.070601 GGCTTTTGGGAATGTTGCTGT 59.929 47.619 0.00 0.00 0.00 4.40
2838 3384 2.407090 GCTTTTGGGAATGTTGCTGTC 58.593 47.619 0.00 0.00 0.00 3.51
2839 3385 2.664916 CTTTTGGGAATGTTGCTGTCG 58.335 47.619 0.00 0.00 0.00 4.35
2840 3386 0.958091 TTTGGGAATGTTGCTGTCGG 59.042 50.000 0.00 0.00 0.00 4.79
2841 3387 0.893270 TTGGGAATGTTGCTGTCGGG 60.893 55.000 0.00 0.00 0.00 5.14
2842 3388 2.700773 GGGAATGTTGCTGTCGGGC 61.701 63.158 0.00 0.00 0.00 6.13
2843 3389 2.700773 GGAATGTTGCTGTCGGGCC 61.701 63.158 0.00 0.00 0.00 5.80
2844 3390 1.675641 GAATGTTGCTGTCGGGCCT 60.676 57.895 0.84 0.00 0.00 5.19
2845 3391 1.648467 GAATGTTGCTGTCGGGCCTC 61.648 60.000 0.84 0.00 0.00 4.70
2846 3392 2.129555 AATGTTGCTGTCGGGCCTCT 62.130 55.000 0.84 0.00 0.00 3.69
2847 3393 2.435059 GTTGCTGTCGGGCCTCTC 60.435 66.667 0.84 0.00 0.00 3.20
2848 3394 3.706373 TTGCTGTCGGGCCTCTCC 61.706 66.667 0.84 0.00 0.00 3.71
2858 3404 3.011517 GCCTCTCCCTGCCCAGAA 61.012 66.667 0.00 0.00 0.00 3.02
2859 3405 3.041469 GCCTCTCCCTGCCCAGAAG 62.041 68.421 0.00 0.00 0.00 2.85
2860 3406 2.373707 CCTCTCCCTGCCCAGAAGG 61.374 68.421 0.00 0.00 39.47 3.46
2861 3407 1.306482 CTCTCCCTGCCCAGAAGGA 60.306 63.158 0.00 0.00 38.24 3.36
2862 3408 0.911525 CTCTCCCTGCCCAGAAGGAA 60.912 60.000 0.00 0.00 38.24 3.36
2863 3409 0.475632 TCTCCCTGCCCAGAAGGAAA 60.476 55.000 0.00 0.00 38.24 3.13
2864 3410 0.034670 CTCCCTGCCCAGAAGGAAAG 60.035 60.000 0.00 0.00 38.24 2.62
2865 3411 0.475632 TCCCTGCCCAGAAGGAAAGA 60.476 55.000 0.00 0.00 38.24 2.52
2866 3412 0.627986 CCCTGCCCAGAAGGAAAGAT 59.372 55.000 0.00 0.00 38.24 2.40
2867 3413 1.684248 CCCTGCCCAGAAGGAAAGATG 60.684 57.143 0.00 0.00 38.24 2.90
2868 3414 1.101331 CTGCCCAGAAGGAAAGATGC 58.899 55.000 0.00 0.00 38.24 3.91
2869 3415 0.323725 TGCCCAGAAGGAAAGATGCC 60.324 55.000 0.00 0.00 38.24 4.40
2870 3416 0.323725 GCCCAGAAGGAAAGATGCCA 60.324 55.000 0.00 0.00 38.24 4.92
2871 3417 1.892329 GCCCAGAAGGAAAGATGCCAA 60.892 52.381 0.00 0.00 38.24 4.52
2872 3418 2.097825 CCCAGAAGGAAAGATGCCAAG 58.902 52.381 0.00 0.00 38.24 3.61
2873 3419 2.556114 CCCAGAAGGAAAGATGCCAAGT 60.556 50.000 0.00 0.00 38.24 3.16
2874 3420 2.490903 CCAGAAGGAAAGATGCCAAGTG 59.509 50.000 0.00 0.00 36.89 3.16
2875 3421 3.152341 CAGAAGGAAAGATGCCAAGTGT 58.848 45.455 0.00 0.00 0.00 3.55
2876 3422 3.190118 CAGAAGGAAAGATGCCAAGTGTC 59.810 47.826 0.00 0.00 0.00 3.67
2877 3423 2.957402 AGGAAAGATGCCAAGTGTCA 57.043 45.000 0.00 0.00 0.00 3.58
2878 3424 3.446442 AGGAAAGATGCCAAGTGTCAT 57.554 42.857 0.00 0.00 0.00 3.06
2879 3425 3.087031 AGGAAAGATGCCAAGTGTCATG 58.913 45.455 0.00 0.00 0.00 3.07
2880 3426 2.821969 GGAAAGATGCCAAGTGTCATGT 59.178 45.455 0.00 0.00 0.00 3.21
2881 3427 3.256631 GGAAAGATGCCAAGTGTCATGTT 59.743 43.478 0.00 0.00 0.00 2.71
2882 3428 4.262164 GGAAAGATGCCAAGTGTCATGTTT 60.262 41.667 0.00 0.00 38.39 2.83
2883 3429 4.942761 AAGATGCCAAGTGTCATGTTTT 57.057 36.364 0.00 0.00 0.00 2.43
2884 3430 6.403866 AAAGATGCCAAGTGTCATGTTTTA 57.596 33.333 0.00 0.00 34.00 1.52
2885 3431 5.376854 AGATGCCAAGTGTCATGTTTTAC 57.623 39.130 0.00 0.00 0.00 2.01
2886 3432 5.072741 AGATGCCAAGTGTCATGTTTTACT 58.927 37.500 0.00 0.00 0.00 2.24
2887 3433 4.566545 TGCCAAGTGTCATGTTTTACTG 57.433 40.909 0.00 0.00 0.00 2.74
2888 3434 3.951037 TGCCAAGTGTCATGTTTTACTGT 59.049 39.130 0.00 0.00 0.00 3.55
2889 3435 4.400884 TGCCAAGTGTCATGTTTTACTGTT 59.599 37.500 0.00 0.00 0.00 3.16
2890 3436 5.590663 TGCCAAGTGTCATGTTTTACTGTTA 59.409 36.000 0.00 0.00 0.00 2.41
2891 3437 6.095580 TGCCAAGTGTCATGTTTTACTGTTAA 59.904 34.615 0.00 0.00 0.00 2.01
2892 3438 6.636850 GCCAAGTGTCATGTTTTACTGTTAAG 59.363 38.462 0.00 0.00 0.00 1.85
2893 3439 7.138736 CCAAGTGTCATGTTTTACTGTTAAGG 58.861 38.462 0.00 0.00 0.00 2.69
2894 3440 7.201785 CCAAGTGTCATGTTTTACTGTTAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
2895 3441 7.875327 AGTGTCATGTTTTACTGTTAAGGTT 57.125 32.000 0.00 0.00 0.00 3.50
2896 3442 7.703328 AGTGTCATGTTTTACTGTTAAGGTTG 58.297 34.615 0.00 0.00 0.00 3.77
2897 3443 7.338449 AGTGTCATGTTTTACTGTTAAGGTTGT 59.662 33.333 0.00 0.00 0.00 3.32
2898 3444 7.431084 GTGTCATGTTTTACTGTTAAGGTTGTG 59.569 37.037 0.00 0.00 0.00 3.33
2899 3445 7.337184 TGTCATGTTTTACTGTTAAGGTTGTGA 59.663 33.333 0.00 0.00 0.00 3.58
2900 3446 8.349983 GTCATGTTTTACTGTTAAGGTTGTGAT 58.650 33.333 0.00 0.00 0.00 3.06
2901 3447 8.349245 TCATGTTTTACTGTTAAGGTTGTGATG 58.651 33.333 0.00 0.00 0.00 3.07
2902 3448 7.867305 TGTTTTACTGTTAAGGTTGTGATGA 57.133 32.000 0.00 0.00 0.00 2.92
2903 3449 8.458573 TGTTTTACTGTTAAGGTTGTGATGAT 57.541 30.769 0.00 0.00 0.00 2.45
2904 3450 8.908903 TGTTTTACTGTTAAGGTTGTGATGATT 58.091 29.630 0.00 0.00 0.00 2.57
2905 3451 9.394477 GTTTTACTGTTAAGGTTGTGATGATTC 57.606 33.333 0.00 0.00 0.00 2.52
2906 3452 7.681939 TTACTGTTAAGGTTGTGATGATTCC 57.318 36.000 0.00 0.00 0.00 3.01
2907 3453 5.630121 ACTGTTAAGGTTGTGATGATTCCA 58.370 37.500 0.00 0.00 0.00 3.53
2908 3454 6.248433 ACTGTTAAGGTTGTGATGATTCCAT 58.752 36.000 0.00 0.00 35.29 3.41
2909 3455 6.721208 ACTGTTAAGGTTGTGATGATTCCATT 59.279 34.615 0.00 0.00 32.09 3.16
2910 3456 6.923012 TGTTAAGGTTGTGATGATTCCATTG 58.077 36.000 0.00 0.00 32.09 2.82
2911 3457 6.718912 TGTTAAGGTTGTGATGATTCCATTGA 59.281 34.615 0.00 0.00 32.09 2.57
2912 3458 5.649782 AAGGTTGTGATGATTCCATTGAC 57.350 39.130 0.00 0.00 32.09 3.18
2913 3459 3.691118 AGGTTGTGATGATTCCATTGACG 59.309 43.478 0.00 0.00 32.09 4.35
2914 3460 3.181497 GGTTGTGATGATTCCATTGACGG 60.181 47.826 0.00 0.00 32.09 4.79
2915 3461 3.348647 TGTGATGATTCCATTGACGGT 57.651 42.857 0.00 0.00 32.09 4.83
2916 3462 4.479786 TGTGATGATTCCATTGACGGTA 57.520 40.909 0.00 0.00 32.09 4.02
2917 3463 5.034852 TGTGATGATTCCATTGACGGTAT 57.965 39.130 0.00 0.00 32.09 2.73
2918 3464 5.436175 TGTGATGATTCCATTGACGGTATT 58.564 37.500 0.00 0.00 32.09 1.89
2919 3465 6.587273 TGTGATGATTCCATTGACGGTATTA 58.413 36.000 0.00 0.00 32.09 0.98
2920 3466 7.223584 TGTGATGATTCCATTGACGGTATTAT 58.776 34.615 0.00 0.00 32.09 1.28
2921 3467 8.371699 TGTGATGATTCCATTGACGGTATTATA 58.628 33.333 0.00 0.00 32.09 0.98
2922 3468 9.214957 GTGATGATTCCATTGACGGTATTATAA 57.785 33.333 0.00 0.00 32.09 0.98
2923 3469 9.435688 TGATGATTCCATTGACGGTATTATAAG 57.564 33.333 0.00 0.00 32.09 1.73
2924 3470 9.436957 GATGATTCCATTGACGGTATTATAAGT 57.563 33.333 0.00 0.00 32.09 2.24
2925 3471 8.601845 TGATTCCATTGACGGTATTATAAGTG 57.398 34.615 0.00 0.00 0.00 3.16
2926 3472 6.854496 TTCCATTGACGGTATTATAAGTGC 57.146 37.500 0.00 0.00 0.00 4.40
2927 3473 5.302360 TCCATTGACGGTATTATAAGTGCC 58.698 41.667 0.00 0.00 0.00 5.01
2928 3474 5.071250 TCCATTGACGGTATTATAAGTGCCT 59.929 40.000 0.00 0.00 0.00 4.75
2929 3475 5.179368 CCATTGACGGTATTATAAGTGCCTG 59.821 44.000 0.00 0.00 0.00 4.85
2930 3476 3.724374 TGACGGTATTATAAGTGCCTGC 58.276 45.455 0.00 0.00 0.00 4.85
2931 3477 2.729882 GACGGTATTATAAGTGCCTGCG 59.270 50.000 0.00 0.00 0.00 5.18
2932 3478 2.363038 ACGGTATTATAAGTGCCTGCGA 59.637 45.455 0.00 0.00 0.00 5.10
2933 3479 2.987149 CGGTATTATAAGTGCCTGCGAG 59.013 50.000 0.00 0.00 0.00 5.03
2934 3480 2.737252 GGTATTATAAGTGCCTGCGAGC 59.263 50.000 0.00 0.00 0.00 5.03
2935 3481 2.918712 ATTATAAGTGCCTGCGAGCT 57.081 45.000 0.00 0.00 0.00 4.09
2936 3482 1.939974 TTATAAGTGCCTGCGAGCTG 58.060 50.000 0.00 0.00 0.00 4.24
2937 3483 0.824109 TATAAGTGCCTGCGAGCTGT 59.176 50.000 0.00 0.00 0.00 4.40
2938 3484 0.824109 ATAAGTGCCTGCGAGCTGTA 59.176 50.000 0.00 0.00 0.00 2.74
2939 3485 0.824109 TAAGTGCCTGCGAGCTGTAT 59.176 50.000 0.00 0.00 0.00 2.29
2940 3486 0.036010 AAGTGCCTGCGAGCTGTATT 60.036 50.000 0.00 0.00 0.00 1.89
2941 3487 0.742281 AGTGCCTGCGAGCTGTATTG 60.742 55.000 0.00 0.00 0.00 1.90
2942 3488 2.108514 TGCCTGCGAGCTGTATTGC 61.109 57.895 0.00 0.00 0.00 3.56
2944 3490 1.372087 GCCTGCGAGCTGTATTGCTT 61.372 55.000 0.00 0.00 44.17 3.91
2945 3491 1.089920 CCTGCGAGCTGTATTGCTTT 58.910 50.000 0.00 0.00 44.17 3.51
2946 3492 2.279741 CCTGCGAGCTGTATTGCTTTA 58.720 47.619 0.00 0.00 44.17 1.85
2947 3493 2.030946 CCTGCGAGCTGTATTGCTTTAC 59.969 50.000 0.00 0.00 44.17 2.01
2948 3494 2.672874 CTGCGAGCTGTATTGCTTTACA 59.327 45.455 0.00 0.00 44.17 2.41
2949 3495 2.415168 TGCGAGCTGTATTGCTTTACAC 59.585 45.455 0.00 0.00 44.17 2.90
2950 3496 2.223044 GCGAGCTGTATTGCTTTACACC 60.223 50.000 0.00 0.00 44.17 4.16
2951 3497 3.000041 CGAGCTGTATTGCTTTACACCA 59.000 45.455 0.00 0.00 44.17 4.17
2952 3498 3.623060 CGAGCTGTATTGCTTTACACCAT 59.377 43.478 0.00 0.00 44.17 3.55
2953 3499 4.094887 CGAGCTGTATTGCTTTACACCATT 59.905 41.667 0.00 0.00 44.17 3.16
2954 3500 5.314923 AGCTGTATTGCTTTACACCATTG 57.685 39.130 0.00 0.00 40.93 2.82
2955 3501 4.766891 AGCTGTATTGCTTTACACCATTGT 59.233 37.500 0.00 0.00 40.93 2.71
2956 3502 5.335897 AGCTGTATTGCTTTACACCATTGTG 60.336 40.000 0.00 0.00 43.68 3.33
2957 3503 4.804108 TGTATTGCTTTACACCATTGTGC 58.196 39.130 0.00 0.00 46.86 4.57
2958 3504 4.279420 TGTATTGCTTTACACCATTGTGCA 59.721 37.500 0.00 0.00 46.86 4.57
2959 3505 3.808466 TTGCTTTACACCATTGTGCAA 57.192 38.095 0.00 0.00 46.86 4.08
2960 3506 3.808466 TGCTTTACACCATTGTGCAAA 57.192 38.095 0.00 0.00 46.86 3.68
2961 3507 3.452474 TGCTTTACACCATTGTGCAAAC 58.548 40.909 0.00 0.00 46.86 2.93
2962 3508 3.118992 TGCTTTACACCATTGTGCAAACA 60.119 39.130 0.00 0.00 46.86 2.83
2963 3509 3.868077 GCTTTACACCATTGTGCAAACAA 59.132 39.130 0.00 0.00 46.86 2.83
2964 3510 4.511082 GCTTTACACCATTGTGCAAACAAT 59.489 37.500 0.00 0.00 46.86 2.71
2965 3511 5.694006 GCTTTACACCATTGTGCAAACAATA 59.306 36.000 3.91 0.00 46.86 1.90
2966 3512 6.201806 GCTTTACACCATTGTGCAAACAATAA 59.798 34.615 3.91 0.00 46.86 1.40
2967 3513 7.470289 TTTACACCATTGTGCAAACAATAAC 57.530 32.000 3.91 0.00 46.86 1.89
2968 3514 5.016051 ACACCATTGTGCAAACAATAACA 57.984 34.783 3.91 0.00 46.86 2.41
2969 3515 5.423015 ACACCATTGTGCAAACAATAACAA 58.577 33.333 3.91 0.00 46.86 2.83
2970 3516 6.054295 ACACCATTGTGCAAACAATAACAAT 58.946 32.000 3.91 0.00 46.86 2.71
2971 3517 6.541641 ACACCATTGTGCAAACAATAACAATT 59.458 30.769 3.91 0.00 46.86 2.32
2972 3518 7.066766 ACACCATTGTGCAAACAATAACAATTT 59.933 29.630 3.91 0.00 46.86 1.82
2973 3519 7.914346 CACCATTGTGCAAACAATAACAATTTT 59.086 29.630 3.91 0.00 40.36 1.82
2974 3520 9.113838 ACCATTGTGCAAACAATAACAATTTTA 57.886 25.926 3.91 0.00 40.36 1.52
2975 3521 9.941664 CCATTGTGCAAACAATAACAATTTTAA 57.058 25.926 3.91 0.00 40.36 1.52
2978 3524 8.147642 TGTGCAAACAATAACAATTTTAAGGG 57.852 30.769 0.00 0.00 0.00 3.95
2979 3525 7.770897 TGTGCAAACAATAACAATTTTAAGGGT 59.229 29.630 0.00 0.00 0.00 4.34
2980 3526 8.616942 GTGCAAACAATAACAATTTTAAGGGTT 58.383 29.630 0.00 0.00 0.00 4.11
2981 3527 9.832445 TGCAAACAATAACAATTTTAAGGGTTA 57.168 25.926 0.00 0.00 0.00 2.85
3000 3546 8.622948 AGGGTTATTAGTTTTAGATAGCATGC 57.377 34.615 10.51 10.51 0.00 4.06
3001 3547 8.217799 AGGGTTATTAGTTTTAGATAGCATGCA 58.782 33.333 21.98 6.36 0.00 3.96
3002 3548 8.846211 GGGTTATTAGTTTTAGATAGCATGCAA 58.154 33.333 21.98 1.21 0.00 4.08
3003 3549 9.665264 GGTTATTAGTTTTAGATAGCATGCAAC 57.335 33.333 21.98 13.25 0.00 4.17
3006 3552 5.567138 AGTTTTAGATAGCATGCAACACC 57.433 39.130 21.98 4.00 0.00 4.16
3007 3553 4.094887 AGTTTTAGATAGCATGCAACACCG 59.905 41.667 21.98 0.00 0.00 4.94
3008 3554 2.979814 TAGATAGCATGCAACACCGT 57.020 45.000 21.98 0.00 0.00 4.83
3009 3555 1.372582 AGATAGCATGCAACACCGTG 58.627 50.000 21.98 0.00 0.00 4.94
3010 3556 1.086696 GATAGCATGCAACACCGTGT 58.913 50.000 21.98 0.00 0.00 4.49
3011 3557 1.468520 GATAGCATGCAACACCGTGTT 59.531 47.619 21.98 11.24 42.08 3.32
3012 3558 1.313772 TAGCATGCAACACCGTGTTT 58.686 45.000 21.98 1.93 38.77 2.83
3013 3559 0.030638 AGCATGCAACACCGTGTTTC 59.969 50.000 21.98 10.50 38.77 2.78
3014 3560 1.268113 GCATGCAACACCGTGTTTCG 61.268 55.000 14.36 5.83 38.77 3.46
3015 3561 1.008995 ATGCAACACCGTGTTTCGC 60.009 52.632 14.36 15.41 38.77 4.70
3016 3562 1.719725 ATGCAACACCGTGTTTCGCA 61.720 50.000 23.83 23.83 41.40 5.10
3017 3563 1.008995 GCAACACCGTGTTTCGCAT 60.009 52.632 14.36 0.00 38.77 4.73
3018 3564 0.996727 GCAACACCGTGTTTCGCATC 60.997 55.000 14.36 0.00 38.77 3.91
3019 3565 0.385473 CAACACCGTGTTTCGCATCC 60.385 55.000 14.36 0.00 38.77 3.51
3020 3566 0.816018 AACACCGTGTTTCGCATCCA 60.816 50.000 11.24 0.00 37.26 3.41
3021 3567 1.227999 ACACCGTGTTTCGCATCCAG 61.228 55.000 0.00 0.00 38.35 3.86
3022 3568 2.325082 ACCGTGTTTCGCATCCAGC 61.325 57.895 0.00 0.00 38.35 4.85
3023 3569 2.034879 CCGTGTTTCGCATCCAGCT 61.035 57.895 0.00 0.00 42.61 4.24
3024 3570 0.739462 CCGTGTTTCGCATCCAGCTA 60.739 55.000 0.00 0.00 42.61 3.32
3025 3571 1.075542 CGTGTTTCGCATCCAGCTAA 58.924 50.000 0.00 0.00 42.61 3.09
3026 3572 1.061131 CGTGTTTCGCATCCAGCTAAG 59.939 52.381 0.00 0.00 42.61 2.18
3027 3573 2.346803 GTGTTTCGCATCCAGCTAAGA 58.653 47.619 0.00 0.00 42.61 2.10
3028 3574 2.939103 GTGTTTCGCATCCAGCTAAGAT 59.061 45.455 0.00 0.00 42.61 2.40
3029 3575 3.001736 GTGTTTCGCATCCAGCTAAGATC 59.998 47.826 0.00 0.00 42.61 2.75
3030 3576 3.118629 TGTTTCGCATCCAGCTAAGATCT 60.119 43.478 0.00 0.00 42.61 2.75
3031 3577 3.827008 TTCGCATCCAGCTAAGATCTT 57.173 42.857 13.56 13.56 42.61 2.40
3032 3578 3.103447 TCGCATCCAGCTAAGATCTTG 57.897 47.619 18.47 9.08 42.61 3.02
3033 3579 1.530293 CGCATCCAGCTAAGATCTTGC 59.470 52.381 18.47 17.67 42.61 4.01
3034 3580 2.806019 CGCATCCAGCTAAGATCTTGCT 60.806 50.000 18.47 19.44 42.61 3.91
3035 3581 3.212685 GCATCCAGCTAAGATCTTGCTT 58.787 45.455 22.06 11.09 41.15 3.91
3036 3582 3.003482 GCATCCAGCTAAGATCTTGCTTG 59.997 47.826 22.06 19.60 41.15 4.01
3037 3583 4.449131 CATCCAGCTAAGATCTTGCTTGA 58.551 43.478 23.21 23.21 34.51 3.02
3038 3584 3.866651 TCCAGCTAAGATCTTGCTTGAC 58.133 45.455 22.06 6.44 34.51 3.18
3039 3585 3.261643 TCCAGCTAAGATCTTGCTTGACA 59.738 43.478 22.06 8.16 34.51 3.58
3040 3586 4.005650 CCAGCTAAGATCTTGCTTGACAA 58.994 43.478 22.06 0.96 34.51 3.18
3041 3587 4.142730 CCAGCTAAGATCTTGCTTGACAAC 60.143 45.833 22.06 0.00 34.51 3.32
3042 3588 4.453478 CAGCTAAGATCTTGCTTGACAACA 59.547 41.667 22.06 0.00 34.51 3.33
3043 3589 4.694509 AGCTAAGATCTTGCTTGACAACAG 59.305 41.667 18.47 4.35 33.68 3.16
3044 3590 3.911661 AAGATCTTGCTTGACAACAGC 57.088 42.857 7.30 0.00 33.68 4.40
3045 3591 3.137446 AGATCTTGCTTGACAACAGCT 57.863 42.857 1.07 0.00 33.68 4.24
3046 3592 4.277515 AGATCTTGCTTGACAACAGCTA 57.722 40.909 1.07 0.00 33.68 3.32
3047 3593 4.252073 AGATCTTGCTTGACAACAGCTAG 58.748 43.478 4.73 4.73 33.68 3.42
3048 3594 2.771089 TCTTGCTTGACAACAGCTAGG 58.229 47.619 9.68 0.00 33.68 3.02
3049 3595 1.808945 CTTGCTTGACAACAGCTAGGG 59.191 52.381 1.07 0.00 33.68 3.53
3050 3596 0.036732 TGCTTGACAACAGCTAGGGG 59.963 55.000 1.07 0.00 0.00 4.79
3051 3597 0.036875 GCTTGACAACAGCTAGGGGT 59.963 55.000 0.00 0.00 0.00 4.95
3052 3598 1.813513 CTTGACAACAGCTAGGGGTG 58.186 55.000 0.00 0.00 45.40 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.036346 GTGAAATTGAGGGCTGCACTTT 59.964 45.455 5.59 0.00 0.00 2.66
30 31 1.890876 CGAAGTGGACAAATGGGTGA 58.109 50.000 0.00 0.00 0.00 4.02
51 52 4.509970 TGTGTCTACAGTTGACCAAAATCG 59.490 41.667 11.97 0.00 33.83 3.34
52 53 5.277828 GGTGTGTCTACAGTTGACCAAAATC 60.278 44.000 11.97 0.25 37.52 2.17
106 107 4.791411 GCTCAAGTTGGCAACGAAAATGTA 60.791 41.667 23.47 5.15 42.51 2.29
113 114 1.065401 CTTTGCTCAAGTTGGCAACGA 59.935 47.619 23.47 14.98 46.14 3.85
114 115 1.202290 ACTTTGCTCAAGTTGGCAACG 60.202 47.619 23.47 22.69 43.89 4.10
115 116 2.584492 ACTTTGCTCAAGTTGGCAAC 57.416 45.000 22.48 22.48 43.89 4.17
126 127 8.480643 AATGTACTGAACTATGTACTTTGCTC 57.519 34.615 0.00 0.00 39.57 4.26
209 244 2.284112 GGTCACCCCACCCGTCTA 60.284 66.667 0.00 0.00 0.00 2.59
214 249 4.324991 GTCACGGTCACCCCACCC 62.325 72.222 0.00 0.00 31.99 4.61
224 259 1.682684 CTCCTAGCCCAGTCACGGT 60.683 63.158 0.00 0.00 0.00 4.83
238 292 1.344191 GGATGAAGCCAGCTCCTCCT 61.344 60.000 0.00 0.00 0.00 3.69
277 331 2.126882 CCAATGATACTGACCCTCCCA 58.873 52.381 0.00 0.00 0.00 4.37
279 333 3.244700 CCATCCAATGATACTGACCCTCC 60.245 52.174 0.00 0.00 0.00 4.30
285 339 4.306391 TCTTCCCCATCCAATGATACTGA 58.694 43.478 0.00 0.00 0.00 3.41
286 340 4.712051 TCTTCCCCATCCAATGATACTG 57.288 45.455 0.00 0.00 0.00 2.74
287 341 5.732331 TTTCTTCCCCATCCAATGATACT 57.268 39.130 0.00 0.00 0.00 2.12
288 342 6.239402 CCATTTTCTTCCCCATCCAATGATAC 60.239 42.308 0.00 0.00 0.00 2.24
289 343 5.840149 CCATTTTCTTCCCCATCCAATGATA 59.160 40.000 0.00 0.00 0.00 2.15
290 344 4.657039 CCATTTTCTTCCCCATCCAATGAT 59.343 41.667 0.00 0.00 0.00 2.45
291 345 4.032310 CCATTTTCTTCCCCATCCAATGA 58.968 43.478 0.00 0.00 0.00 2.57
292 346 3.135167 CCCATTTTCTTCCCCATCCAATG 59.865 47.826 0.00 0.00 0.00 2.82
293 347 3.387012 CCCATTTTCTTCCCCATCCAAT 58.613 45.455 0.00 0.00 0.00 3.16
294 348 2.561755 CCCCATTTTCTTCCCCATCCAA 60.562 50.000 0.00 0.00 0.00 3.53
296 350 1.692441 CCCCCATTTTCTTCCCCATCC 60.692 57.143 0.00 0.00 0.00 3.51
308 363 7.089566 AGGTTATATTCTAGTCTCCCCCATTT 58.910 38.462 0.00 0.00 0.00 2.32
309 364 6.644882 AGGTTATATTCTAGTCTCCCCCATT 58.355 40.000 0.00 0.00 0.00 3.16
311 366 5.698369 AGGTTATATTCTAGTCTCCCCCA 57.302 43.478 0.00 0.00 0.00 4.96
360 454 9.422196 GCAACTAGTATGTTGTCGAATAATTTC 57.578 33.333 0.00 0.00 46.33 2.17
361 455 8.395633 GGCAACTAGTATGTTGTCGAATAATTT 58.604 33.333 0.00 0.00 46.33 1.82
362 456 7.916552 GGCAACTAGTATGTTGTCGAATAATT 58.083 34.615 0.00 0.00 46.33 1.40
390 484 4.605183 TCTTTTCTAGTCTCCCCTCTCTG 58.395 47.826 0.00 0.00 0.00 3.35
409 503 9.213799 GATGTGTGAAGTTAAGAGAAGATTCTT 57.786 33.333 0.00 0.00 40.39 2.52
411 505 8.539770 TGATGTGTGAAGTTAAGAGAAGATTC 57.460 34.615 0.00 0.00 0.00 2.52
440 534 2.363788 TGGTTCGTGCTGACATAGAC 57.636 50.000 0.00 0.00 0.00 2.59
453 547 2.863137 CACCCAAACAAATGTTGGTTCG 59.137 45.455 5.76 0.00 38.84 3.95
462 556 3.141272 TCCTCCTAACCACCCAAACAAAT 59.859 43.478 0.00 0.00 0.00 2.32
521 621 7.094933 GGAAAATACGAGTACCAATGTCAAGTT 60.095 37.037 0.00 0.00 0.00 2.66
547 647 6.260050 TCGCCACAAGCCTAGAATAAATTTAG 59.740 38.462 3.94 0.00 38.78 1.85
549 649 4.947388 TCGCCACAAGCCTAGAATAAATTT 59.053 37.500 0.00 0.00 38.78 1.82
558 658 0.391661 ACACATCGCCACAAGCCTAG 60.392 55.000 0.00 0.00 38.78 3.02
564 664 0.948623 CGGAAGACACATCGCCACAA 60.949 55.000 0.00 0.00 0.00 3.33
565 665 1.374125 CGGAAGACACATCGCCACA 60.374 57.895 0.00 0.00 0.00 4.17
567 667 1.374125 CACGGAAGACACATCGCCA 60.374 57.895 0.00 0.00 0.00 5.69
582 682 2.095212 TGATGGAACGTCTCTTCTCACG 60.095 50.000 0.00 0.00 41.90 4.35
600 700 9.661563 TCCGTAGTAGACATTTTTGTTATTGAT 57.338 29.630 0.00 0.00 0.00 2.57
603 703 7.822822 AGCTCCGTAGTAGACATTTTTGTTATT 59.177 33.333 0.00 0.00 0.00 1.40
605 705 6.694447 AGCTCCGTAGTAGACATTTTTGTTA 58.306 36.000 0.00 0.00 0.00 2.41
614 716 2.236644 AGTCTGAGCTCCGTAGTAGACA 59.763 50.000 23.79 0.00 35.04 3.41
619 721 1.003812 ACTGAGTCTGAGCTCCGTAGT 59.996 52.381 12.15 6.32 32.49 2.73
621 723 2.085320 GAACTGAGTCTGAGCTCCGTA 58.915 52.381 12.15 0.00 32.97 4.02
625 727 1.132262 CGAGGAACTGAGTCTGAGCTC 59.868 57.143 6.82 6.82 41.55 4.09
632 742 0.528470 CACCTCCGAGGAACTGAGTC 59.472 60.000 21.89 0.00 41.55 3.36
633 743 1.536943 GCACCTCCGAGGAACTGAGT 61.537 60.000 21.89 0.00 41.55 3.41
641 763 2.415010 CATCGAGCACCTCCGAGG 59.585 66.667 13.31 13.31 42.49 4.63
652 774 1.195448 GCATAAATCCCGCACATCGAG 59.805 52.381 0.00 0.00 41.67 4.04
653 775 1.202639 AGCATAAATCCCGCACATCGA 60.203 47.619 0.00 0.00 41.67 3.59
656 778 5.772521 GATTTTAGCATAAATCCCGCACAT 58.227 37.500 10.73 0.00 38.16 3.21
657 779 5.181690 GATTTTAGCATAAATCCCGCACA 57.818 39.130 10.73 0.00 38.16 4.57
685 1146 2.203451 ACACCGACCTCCTGACGT 60.203 61.111 0.00 0.00 0.00 4.34
743 1214 3.818121 TTTCCCCGTCGTGCACCTG 62.818 63.158 12.15 0.55 0.00 4.00
744 1215 3.530910 CTTTCCCCGTCGTGCACCT 62.531 63.158 12.15 0.00 0.00 4.00
745 1216 3.047877 CTTTCCCCGTCGTGCACC 61.048 66.667 12.15 0.00 0.00 5.01
746 1217 2.999739 TTCCTTTCCCCGTCGTGCAC 63.000 60.000 6.82 6.82 0.00 4.57
761 1232 1.009997 TTGGGGGCTGATGATTTCCT 58.990 50.000 0.00 0.00 0.00 3.36
766 1237 2.270874 GACCGTTGGGGGCTGATGAT 62.271 60.000 0.00 0.00 42.52 2.45
767 1238 2.933287 ACCGTTGGGGGCTGATGA 60.933 61.111 0.00 0.00 41.60 2.92
768 1239 2.438434 GACCGTTGGGGGCTGATG 60.438 66.667 0.00 0.00 42.52 3.07
773 1246 3.299977 GTTTGGACCGTTGGGGGC 61.300 66.667 0.00 0.00 46.65 5.80
823 1307 3.954258 CCTGAATTTGGTAGGGAATCCAC 59.046 47.826 0.09 0.00 33.12 4.02
825 1309 2.959030 GCCTGAATTTGGTAGGGAATCC 59.041 50.000 0.00 0.00 32.15 3.01
889 1382 1.670087 GGTCGCATCGATCGGATTGAT 60.670 52.381 16.41 13.85 38.42 2.57
892 1385 0.039074 GAGGTCGCATCGATCGGATT 60.039 55.000 16.41 0.00 42.32 3.01
893 1386 1.581954 GAGGTCGCATCGATCGGAT 59.418 57.895 16.41 4.75 42.32 4.18
894 1387 2.552819 GGAGGTCGCATCGATCGGA 61.553 63.158 16.41 0.94 42.32 4.55
895 1388 2.049985 GGAGGTCGCATCGATCGG 60.050 66.667 16.41 0.48 42.32 4.18
1485 1987 1.284715 CTCGGCCATCGCATACGTA 59.715 57.895 2.24 0.00 41.18 3.57
1538 2043 0.325933 CTGCTCAACCTCATCCACCA 59.674 55.000 0.00 0.00 0.00 4.17
1740 2245 0.322008 CAACCTCTGGCACCTCCTTC 60.322 60.000 0.00 0.00 35.26 3.46
1750 2255 1.186917 TTTGGCATGGCAACCTCTGG 61.187 55.000 32.02 0.00 0.00 3.86
1786 2291 2.358939 GCAAAGGCATCAAGAACAGG 57.641 50.000 0.00 0.00 40.72 4.00
1799 2304 4.950744 CGAAAGCAGGTGCAAAGG 57.049 55.556 4.48 0.00 45.16 3.11
1824 2329 4.263243 CCCTCATCAAGTCTTTCACCTTCT 60.263 45.833 0.00 0.00 0.00 2.85
1834 2339 1.343884 CCTCCTCCCCTCATCAAGTCT 60.344 57.143 0.00 0.00 0.00 3.24
1862 2367 4.043037 ACTATCCTTTTCCGACATCGAC 57.957 45.455 2.09 0.00 43.02 4.20
1863 2368 4.441079 GGAACTATCCTTTTCCGACATCGA 60.441 45.833 2.09 0.00 42.93 3.59
1867 2378 4.627284 TTGGAACTATCCTTTTCCGACA 57.373 40.909 0.00 0.00 46.70 4.35
1875 2386 3.201045 GCCTCTCCTTTGGAACTATCCTT 59.799 47.826 0.00 0.00 46.70 3.36
1912 2423 4.420552 TGACTTCCTATCAGTCCCTATCCT 59.579 45.833 0.00 0.00 40.12 3.24
1917 2428 3.379452 CCTTGACTTCCTATCAGTCCCT 58.621 50.000 0.00 0.00 40.12 4.20
1921 2432 3.791320 TCACCCTTGACTTCCTATCAGT 58.209 45.455 0.00 0.00 0.00 3.41
1975 2488 2.356667 CAGGAACAAGGGGCCCTC 59.643 66.667 28.97 13.89 30.89 4.30
2061 2577 0.108207 AGCATCAGCATGGTAGGAGC 59.892 55.000 0.00 0.00 45.49 4.70
2063 2579 0.179037 GCAGCATCAGCATGGTAGGA 60.179 55.000 0.00 0.00 45.49 2.94
2065 2581 1.227639 GAGCAGCATCAGCATGGTAG 58.772 55.000 0.00 0.00 45.49 3.18
2173 2711 6.889177 TGCTTCTATCAACAATATGTTTCCCA 59.111 34.615 0.00 0.00 38.77 4.37
2207 2745 0.242017 CAAGCAACTAACCAGGCAGC 59.758 55.000 0.00 0.00 0.00 5.25
2280 2825 8.847196 ACTCGATAACAGTGCATAGAACTATAA 58.153 33.333 0.00 0.00 0.00 0.98
2302 2847 3.012518 AGATGGCAAATCTTCCAACTCG 58.987 45.455 0.00 0.00 35.75 4.18
2352 2897 0.174845 CCAACCTGAATGCCAGCATG 59.825 55.000 5.78 0.00 41.57 4.06
2374 2919 7.219535 CCATCGAATGAACTGCAAATAAAGAAG 59.780 37.037 0.00 0.00 0.00 2.85
2376 2921 6.374053 TCCATCGAATGAACTGCAAATAAAGA 59.626 34.615 0.00 0.00 0.00 2.52
2391 2936 4.847667 GCAATCTGCTCATTCCATCGAATG 60.848 45.833 6.71 6.71 44.02 2.67
2395 2940 2.682952 GCAATCTGCTCATTCCATCG 57.317 50.000 0.00 0.00 40.96 3.84
2407 2952 5.225899 TCGACATTTGAATCAGCAATCTG 57.774 39.130 0.00 0.00 41.67 2.90
2409 2954 5.684626 GGAATCGACATTTGAATCAGCAATC 59.315 40.000 0.00 0.00 0.00 2.67
2442 2988 0.543749 ATGAAGTAGGCCAGCTGGTC 59.456 55.000 30.54 30.54 40.99 4.02
2445 2991 4.077300 TGATAATGAAGTAGGCCAGCTG 57.923 45.455 6.78 6.78 0.00 4.24
2446 2992 4.103785 ACATGATAATGAAGTAGGCCAGCT 59.896 41.667 5.01 0.00 0.00 4.24
2455 3001 6.931281 CGTCCCATAGAACATGATAATGAAGT 59.069 38.462 0.00 0.00 0.00 3.01
2466 3012 5.614324 TTTGATCTCGTCCCATAGAACAT 57.386 39.130 0.00 0.00 0.00 2.71
2473 3019 4.881850 GTGGTAAATTTGATCTCGTCCCAT 59.118 41.667 0.00 0.00 0.00 4.00
2484 3030 6.303054 TCCAACTCATCAGTGGTAAATTTGA 58.697 36.000 0.00 0.00 31.06 2.69
2517 3063 3.398954 ACGTGTAGCACAAGTTGTTTG 57.601 42.857 5.57 0.00 37.53 2.93
2518 3064 4.632688 AGTTACGTGTAGCACAAGTTGTTT 59.367 37.500 5.57 0.21 37.53 2.83
2519 3065 4.186159 AGTTACGTGTAGCACAAGTTGTT 58.814 39.130 5.57 0.00 37.53 2.83
2520 3066 3.788937 AGTTACGTGTAGCACAAGTTGT 58.211 40.909 1.64 1.64 37.53 3.32
2521 3067 4.789095 AAGTTACGTGTAGCACAAGTTG 57.211 40.909 11.51 0.00 37.53 3.16
2522 3068 5.461078 CAGTAAGTTACGTGTAGCACAAGTT 59.539 40.000 7.38 0.00 37.53 2.66
2523 3069 4.980434 CAGTAAGTTACGTGTAGCACAAGT 59.020 41.667 7.38 11.15 43.02 3.16
2524 3070 4.980434 ACAGTAAGTTACGTGTAGCACAAG 59.020 41.667 13.23 0.00 33.40 3.16
2525 3071 4.935702 ACAGTAAGTTACGTGTAGCACAA 58.064 39.130 13.23 0.00 33.40 3.33
2526 3072 4.572985 ACAGTAAGTTACGTGTAGCACA 57.427 40.909 13.23 0.00 33.40 4.57
2527 3073 4.383948 GGAACAGTAAGTTACGTGTAGCAC 59.616 45.833 14.48 9.12 41.51 4.40
2528 3074 4.037803 TGGAACAGTAAGTTACGTGTAGCA 59.962 41.667 14.48 0.00 44.50 3.49
2529 3075 4.549458 TGGAACAGTAAGTTACGTGTAGC 58.451 43.478 14.48 11.10 44.50 3.58
2604 3150 7.121315 AGCATACCTGAAACAGTAGGAATTTTC 59.879 37.037 0.00 0.00 37.52 2.29
2643 3189 3.305199 GGGAGTTTACGGATCGATACAGG 60.305 52.174 8.69 0.00 0.00 4.00
2655 3201 1.444836 TTTCGCATGGGGAGTTTACG 58.555 50.000 10.21 0.00 0.00 3.18
2677 3223 4.697352 GCATGAGAAGCTAAAGAGGAAACA 59.303 41.667 0.00 0.00 0.00 2.83
2678 3224 4.940654 AGCATGAGAAGCTAAAGAGGAAAC 59.059 41.667 0.00 0.00 41.32 2.78
2784 3330 3.726517 CCGCAAGCAACAGACCGG 61.727 66.667 0.00 0.00 0.00 5.28
2785 3331 2.443957 GAACCGCAAGCAACAGACCG 62.444 60.000 0.00 0.00 0.00 4.79
2786 3332 1.282875 GAACCGCAAGCAACAGACC 59.717 57.895 0.00 0.00 0.00 3.85
2787 3333 0.593128 ATGAACCGCAAGCAACAGAC 59.407 50.000 0.00 0.00 0.00 3.51
2788 3334 0.592637 CATGAACCGCAAGCAACAGA 59.407 50.000 0.00 0.00 0.00 3.41
2789 3335 1.005294 GCATGAACCGCAAGCAACAG 61.005 55.000 0.00 0.00 40.75 3.16
2790 3336 1.007502 GCATGAACCGCAAGCAACA 60.008 52.632 0.00 0.00 40.75 3.33
2791 3337 2.082366 CGCATGAACCGCAAGCAAC 61.082 57.895 0.00 0.00 41.10 4.17
2792 3338 2.254951 CGCATGAACCGCAAGCAA 59.745 55.556 0.00 0.00 41.10 3.91
2793 3339 3.736100 CCGCATGAACCGCAAGCA 61.736 61.111 0.00 0.00 41.10 3.91
2795 3341 4.817063 CGCCGCATGAACCGCAAG 62.817 66.667 0.00 0.00 0.00 4.01
2812 3358 1.194121 ACATTCCCAAAAGCCCTGGC 61.194 55.000 0.00 0.00 42.33 4.85
2813 3359 1.002315 CAACATTCCCAAAAGCCCTGG 59.998 52.381 0.00 0.00 0.00 4.45
2814 3360 1.608801 GCAACATTCCCAAAAGCCCTG 60.609 52.381 0.00 0.00 0.00 4.45
2815 3361 0.686789 GCAACATTCCCAAAAGCCCT 59.313 50.000 0.00 0.00 0.00 5.19
2816 3362 0.686789 AGCAACATTCCCAAAAGCCC 59.313 50.000 0.00 0.00 0.00 5.19
2817 3363 1.070601 ACAGCAACATTCCCAAAAGCC 59.929 47.619 0.00 0.00 0.00 4.35
2818 3364 2.407090 GACAGCAACATTCCCAAAAGC 58.593 47.619 0.00 0.00 0.00 3.51
2819 3365 2.607771 CCGACAGCAACATTCCCAAAAG 60.608 50.000 0.00 0.00 0.00 2.27
2820 3366 1.339610 CCGACAGCAACATTCCCAAAA 59.660 47.619 0.00 0.00 0.00 2.44
2821 3367 0.958091 CCGACAGCAACATTCCCAAA 59.042 50.000 0.00 0.00 0.00 3.28
2822 3368 0.893270 CCCGACAGCAACATTCCCAA 60.893 55.000 0.00 0.00 0.00 4.12
2823 3369 1.303236 CCCGACAGCAACATTCCCA 60.303 57.895 0.00 0.00 0.00 4.37
2824 3370 2.700773 GCCCGACAGCAACATTCCC 61.701 63.158 0.00 0.00 0.00 3.97
2825 3371 2.700773 GGCCCGACAGCAACATTCC 61.701 63.158 0.00 0.00 0.00 3.01
2826 3372 1.648467 GAGGCCCGACAGCAACATTC 61.648 60.000 0.00 0.00 0.00 2.67
2827 3373 1.675641 GAGGCCCGACAGCAACATT 60.676 57.895 0.00 0.00 0.00 2.71
2828 3374 2.045926 GAGGCCCGACAGCAACAT 60.046 61.111 0.00 0.00 0.00 2.71
2829 3375 3.240134 GAGAGGCCCGACAGCAACA 62.240 63.158 0.00 0.00 0.00 3.33
2830 3376 2.435059 GAGAGGCCCGACAGCAAC 60.435 66.667 0.00 0.00 0.00 4.17
2831 3377 3.706373 GGAGAGGCCCGACAGCAA 61.706 66.667 0.00 0.00 0.00 3.91
2841 3387 3.011517 TTCTGGGCAGGGAGAGGC 61.012 66.667 0.00 0.00 0.00 4.70
2842 3388 2.373707 CCTTCTGGGCAGGGAGAGG 61.374 68.421 0.00 0.00 0.00 3.69
2843 3389 0.911525 TTCCTTCTGGGCAGGGAGAG 60.912 60.000 0.00 0.00 34.39 3.20
2844 3390 0.475632 TTTCCTTCTGGGCAGGGAGA 60.476 55.000 0.00 0.00 34.39 3.71
2845 3391 0.034670 CTTTCCTTCTGGGCAGGGAG 60.035 60.000 0.00 0.00 34.39 4.30
2846 3392 0.475632 TCTTTCCTTCTGGGCAGGGA 60.476 55.000 0.00 0.00 34.39 4.20
2847 3393 0.627986 ATCTTTCCTTCTGGGCAGGG 59.372 55.000 0.00 0.00 34.39 4.45
2848 3394 1.760192 CATCTTTCCTTCTGGGCAGG 58.240 55.000 0.00 0.00 34.39 4.85
2849 3395 1.101331 GCATCTTTCCTTCTGGGCAG 58.899 55.000 0.00 0.00 34.39 4.85
2850 3396 0.323725 GGCATCTTTCCTTCTGGGCA 60.324 55.000 0.00 0.00 34.39 5.36
2851 3397 0.323725 TGGCATCTTTCCTTCTGGGC 60.324 55.000 0.00 0.00 34.39 5.36
2852 3398 2.097825 CTTGGCATCTTTCCTTCTGGG 58.902 52.381 0.00 0.00 0.00 4.45
2853 3399 2.490903 CACTTGGCATCTTTCCTTCTGG 59.509 50.000 0.00 0.00 0.00 3.86
2854 3400 3.152341 ACACTTGGCATCTTTCCTTCTG 58.848 45.455 0.00 0.00 0.00 3.02
2855 3401 3.181440 TGACACTTGGCATCTTTCCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
2856 3402 3.149196 TGACACTTGGCATCTTTCCTTC 58.851 45.455 0.00 0.00 0.00 3.46
2857 3403 3.228188 TGACACTTGGCATCTTTCCTT 57.772 42.857 0.00 0.00 0.00 3.36
2858 3404 2.957402 TGACACTTGGCATCTTTCCT 57.043 45.000 0.00 0.00 0.00 3.36
2859 3405 2.821969 ACATGACACTTGGCATCTTTCC 59.178 45.455 0.00 0.00 43.11 3.13
2860 3406 4.510038 AACATGACACTTGGCATCTTTC 57.490 40.909 0.00 0.00 43.11 2.62
2861 3407 4.942761 AAACATGACACTTGGCATCTTT 57.057 36.364 0.00 0.00 43.11 2.52
2862 3408 4.942761 AAAACATGACACTTGGCATCTT 57.057 36.364 0.00 0.00 43.11 2.40
2863 3409 5.048504 CAGTAAAACATGACACTTGGCATCT 60.049 40.000 0.00 0.00 43.11 2.90
2864 3410 5.156355 CAGTAAAACATGACACTTGGCATC 58.844 41.667 0.00 0.00 43.11 3.91
2865 3411 4.584325 ACAGTAAAACATGACACTTGGCAT 59.416 37.500 0.00 0.00 46.65 4.40
2866 3412 3.951037 ACAGTAAAACATGACACTTGGCA 59.049 39.130 0.00 0.00 37.54 4.92
2867 3413 4.568152 ACAGTAAAACATGACACTTGGC 57.432 40.909 0.00 0.00 0.00 4.52
2868 3414 7.138736 CCTTAACAGTAAAACATGACACTTGG 58.861 38.462 0.00 0.00 0.00 3.61
2869 3415 7.703328 ACCTTAACAGTAAAACATGACACTTG 58.297 34.615 0.00 0.00 0.00 3.16
2870 3416 7.875327 ACCTTAACAGTAAAACATGACACTT 57.125 32.000 0.00 0.00 0.00 3.16
2871 3417 7.338449 ACAACCTTAACAGTAAAACATGACACT 59.662 33.333 0.00 0.00 0.00 3.55
2872 3418 7.431084 CACAACCTTAACAGTAAAACATGACAC 59.569 37.037 0.00 0.00 0.00 3.67
2873 3419 7.337184 TCACAACCTTAACAGTAAAACATGACA 59.663 33.333 0.00 0.00 0.00 3.58
2874 3420 7.699566 TCACAACCTTAACAGTAAAACATGAC 58.300 34.615 0.00 0.00 0.00 3.06
2875 3421 7.867305 TCACAACCTTAACAGTAAAACATGA 57.133 32.000 0.00 0.00 0.00 3.07
2876 3422 8.349245 TCATCACAACCTTAACAGTAAAACATG 58.651 33.333 0.00 0.00 0.00 3.21
2877 3423 8.458573 TCATCACAACCTTAACAGTAAAACAT 57.541 30.769 0.00 0.00 0.00 2.71
2878 3424 7.867305 TCATCACAACCTTAACAGTAAAACA 57.133 32.000 0.00 0.00 0.00 2.83
2879 3425 9.394477 GAATCATCACAACCTTAACAGTAAAAC 57.606 33.333 0.00 0.00 0.00 2.43
2880 3426 8.573035 GGAATCATCACAACCTTAACAGTAAAA 58.427 33.333 0.00 0.00 0.00 1.52
2881 3427 7.721842 TGGAATCATCACAACCTTAACAGTAAA 59.278 33.333 0.00 0.00 0.00 2.01
2882 3428 7.227873 TGGAATCATCACAACCTTAACAGTAA 58.772 34.615 0.00 0.00 0.00 2.24
2883 3429 6.774673 TGGAATCATCACAACCTTAACAGTA 58.225 36.000 0.00 0.00 0.00 2.74
2884 3430 5.630121 TGGAATCATCACAACCTTAACAGT 58.370 37.500 0.00 0.00 0.00 3.55
2885 3431 6.764308 ATGGAATCATCACAACCTTAACAG 57.236 37.500 0.00 0.00 0.00 3.16
2886 3432 6.718912 TCAATGGAATCATCACAACCTTAACA 59.281 34.615 0.00 0.00 32.24 2.41
2887 3433 7.029563 GTCAATGGAATCATCACAACCTTAAC 58.970 38.462 0.00 0.00 32.24 2.01
2888 3434 6.128035 CGTCAATGGAATCATCACAACCTTAA 60.128 38.462 0.00 0.00 32.24 1.85
2889 3435 5.353956 CGTCAATGGAATCATCACAACCTTA 59.646 40.000 0.00 0.00 32.24 2.69
2890 3436 4.156556 CGTCAATGGAATCATCACAACCTT 59.843 41.667 0.00 0.00 32.24 3.50
2891 3437 3.691118 CGTCAATGGAATCATCACAACCT 59.309 43.478 0.00 0.00 32.24 3.50
2892 3438 3.181497 CCGTCAATGGAATCATCACAACC 60.181 47.826 0.00 0.00 32.24 3.77
2893 3439 3.440173 ACCGTCAATGGAATCATCACAAC 59.560 43.478 0.00 0.00 32.24 3.32
2894 3440 3.684908 ACCGTCAATGGAATCATCACAA 58.315 40.909 0.00 0.00 32.24 3.33
2895 3441 3.348647 ACCGTCAATGGAATCATCACA 57.651 42.857 0.00 0.00 32.24 3.58
2896 3442 7.672983 ATAATACCGTCAATGGAATCATCAC 57.327 36.000 0.00 0.00 32.24 3.06
2897 3443 9.435688 CTTATAATACCGTCAATGGAATCATCA 57.564 33.333 0.00 0.00 32.24 3.07
2898 3444 9.436957 ACTTATAATACCGTCAATGGAATCATC 57.563 33.333 0.00 0.00 32.24 2.92
2899 3445 9.219603 CACTTATAATACCGTCAATGGAATCAT 57.780 33.333 0.00 0.00 34.56 2.45
2900 3446 7.172532 GCACTTATAATACCGTCAATGGAATCA 59.827 37.037 0.00 0.00 0.00 2.57
2901 3447 7.360946 GGCACTTATAATACCGTCAATGGAATC 60.361 40.741 0.00 0.00 0.00 2.52
2902 3448 6.430000 GGCACTTATAATACCGTCAATGGAAT 59.570 38.462 0.00 0.00 0.00 3.01
2903 3449 5.761234 GGCACTTATAATACCGTCAATGGAA 59.239 40.000 0.00 0.00 0.00 3.53
2904 3450 5.071250 AGGCACTTATAATACCGTCAATGGA 59.929 40.000 0.00 0.00 27.25 3.41
2905 3451 5.179368 CAGGCACTTATAATACCGTCAATGG 59.821 44.000 0.00 0.00 34.60 3.16
2906 3452 5.334105 GCAGGCACTTATAATACCGTCAATG 60.334 44.000 0.00 0.00 34.60 2.82
2907 3453 4.755123 GCAGGCACTTATAATACCGTCAAT 59.245 41.667 0.00 0.00 34.60 2.57
2908 3454 4.124238 GCAGGCACTTATAATACCGTCAA 58.876 43.478 0.00 0.00 34.60 3.18
2909 3455 3.724374 GCAGGCACTTATAATACCGTCA 58.276 45.455 0.00 0.00 34.60 4.35
2910 3456 2.729882 CGCAGGCACTTATAATACCGTC 59.270 50.000 0.00 0.00 34.60 4.79
2911 3457 2.363038 TCGCAGGCACTTATAATACCGT 59.637 45.455 0.00 0.00 34.60 4.83
2912 3458 2.987149 CTCGCAGGCACTTATAATACCG 59.013 50.000 0.00 0.00 34.60 4.02
2913 3459 2.737252 GCTCGCAGGCACTTATAATACC 59.263 50.000 0.00 0.00 34.60 2.73
2914 3460 3.430218 CAGCTCGCAGGCACTTATAATAC 59.570 47.826 0.86 0.00 34.60 1.89
2915 3461 3.069586 ACAGCTCGCAGGCACTTATAATA 59.930 43.478 0.86 0.00 34.60 0.98
2916 3462 2.158900 ACAGCTCGCAGGCACTTATAAT 60.159 45.455 0.86 0.00 34.60 1.28
2917 3463 1.207089 ACAGCTCGCAGGCACTTATAA 59.793 47.619 0.86 0.00 34.60 0.98
2918 3464 0.824109 ACAGCTCGCAGGCACTTATA 59.176 50.000 0.86 0.00 34.60 0.98
2919 3465 0.824109 TACAGCTCGCAGGCACTTAT 59.176 50.000 0.86 0.00 34.60 1.73
2920 3466 0.824109 ATACAGCTCGCAGGCACTTA 59.176 50.000 0.86 0.00 34.60 2.24
2921 3467 0.036010 AATACAGCTCGCAGGCACTT 60.036 50.000 0.86 0.00 34.60 3.16
2922 3468 0.742281 CAATACAGCTCGCAGGCACT 60.742 55.000 0.86 0.00 43.88 4.40
2923 3469 1.717937 CAATACAGCTCGCAGGCAC 59.282 57.895 0.86 0.00 34.17 5.01
2924 3470 2.108514 GCAATACAGCTCGCAGGCA 61.109 57.895 0.86 0.00 34.17 4.75
2925 3471 1.372087 AAGCAATACAGCTCGCAGGC 61.372 55.000 0.00 0.00 45.89 4.85
2926 3472 1.089920 AAAGCAATACAGCTCGCAGG 58.910 50.000 0.00 0.00 45.89 4.85
2927 3473 2.672874 TGTAAAGCAATACAGCTCGCAG 59.327 45.455 0.00 0.00 45.89 5.18
2928 3474 2.415168 GTGTAAAGCAATACAGCTCGCA 59.585 45.455 2.22 0.00 45.89 5.10
2929 3475 2.223044 GGTGTAAAGCAATACAGCTCGC 60.223 50.000 18.34 2.41 45.89 5.03
2930 3476 3.658351 GGTGTAAAGCAATACAGCTCG 57.342 47.619 18.34 0.00 45.89 5.03
2934 3480 4.858692 GCACAATGGTGTAAAGCAATACAG 59.141 41.667 1.31 0.00 46.95 2.74
2935 3481 4.279420 TGCACAATGGTGTAAAGCAATACA 59.721 37.500 1.31 0.00 46.95 2.29
2936 3482 4.804108 TGCACAATGGTGTAAAGCAATAC 58.196 39.130 1.31 0.00 46.95 1.89
2937 3483 5.459536 TTGCACAATGGTGTAAAGCAATA 57.540 34.783 0.63 0.00 44.89 1.90
2938 3484 4.333913 TTGCACAATGGTGTAAAGCAAT 57.666 36.364 0.63 0.00 44.89 3.56
2939 3485 3.808466 TTGCACAATGGTGTAAAGCAA 57.192 38.095 0.63 0.00 44.89 3.91
2953 3499 7.770897 ACCCTTAAAATTGTTATTGTTTGCACA 59.229 29.630 0.00 0.00 0.00 4.57
2954 3500 8.148807 ACCCTTAAAATTGTTATTGTTTGCAC 57.851 30.769 0.00 0.00 0.00 4.57
2955 3501 8.738645 AACCCTTAAAATTGTTATTGTTTGCA 57.261 26.923 0.00 0.00 0.00 4.08
2974 3520 9.067986 GCATGCTATCTAAAACTAATAACCCTT 57.932 33.333 11.37 0.00 0.00 3.95
2975 3521 8.217799 TGCATGCTATCTAAAACTAATAACCCT 58.782 33.333 20.33 0.00 0.00 4.34
2976 3522 8.391075 TGCATGCTATCTAAAACTAATAACCC 57.609 34.615 20.33 0.00 0.00 4.11
2977 3523 9.665264 GTTGCATGCTATCTAAAACTAATAACC 57.335 33.333 20.33 0.00 0.00 2.85
2980 3526 8.836413 GGTGTTGCATGCTATCTAAAACTAATA 58.164 33.333 20.33 0.00 0.00 0.98
2981 3527 7.467267 CGGTGTTGCATGCTATCTAAAACTAAT 60.467 37.037 20.33 0.00 0.00 1.73
2982 3528 6.183360 CGGTGTTGCATGCTATCTAAAACTAA 60.183 38.462 20.33 0.00 0.00 2.24
2983 3529 5.293324 CGGTGTTGCATGCTATCTAAAACTA 59.707 40.000 20.33 1.74 0.00 2.24
2984 3530 4.094887 CGGTGTTGCATGCTATCTAAAACT 59.905 41.667 20.33 0.00 0.00 2.66
2985 3531 4.142687 ACGGTGTTGCATGCTATCTAAAAC 60.143 41.667 20.33 13.06 0.00 2.43
2986 3532 4.006989 ACGGTGTTGCATGCTATCTAAAA 58.993 39.130 20.33 0.00 0.00 1.52
2987 3533 3.373748 CACGGTGTTGCATGCTATCTAAA 59.626 43.478 20.33 0.00 0.00 1.85
2988 3534 2.935849 CACGGTGTTGCATGCTATCTAA 59.064 45.455 20.33 0.58 0.00 2.10
2989 3535 2.093711 ACACGGTGTTGCATGCTATCTA 60.094 45.455 20.33 0.00 0.00 1.98
2990 3536 1.339055 ACACGGTGTTGCATGCTATCT 60.339 47.619 20.33 0.00 0.00 1.98
2991 3537 1.086696 ACACGGTGTTGCATGCTATC 58.913 50.000 20.33 9.58 0.00 2.08
2992 3538 1.533625 AACACGGTGTTGCATGCTAT 58.466 45.000 24.56 0.00 39.45 2.97
2993 3539 1.265635 GAAACACGGTGTTGCATGCTA 59.734 47.619 25.69 8.83 40.14 3.49
2994 3540 0.030638 GAAACACGGTGTTGCATGCT 59.969 50.000 25.69 10.10 40.14 3.79
2995 3541 1.268113 CGAAACACGGTGTTGCATGC 61.268 55.000 27.00 11.82 40.14 4.06
2996 3542 1.268113 GCGAAACACGGTGTTGCATG 61.268 55.000 27.00 15.34 40.14 4.06
2997 3543 1.008995 GCGAAACACGGTGTTGCAT 60.009 52.632 27.00 13.54 40.14 3.96
2998 3544 1.719725 ATGCGAAACACGGTGTTGCA 61.720 50.000 29.32 29.32 40.14 4.08
2999 3545 0.996727 GATGCGAAACACGGTGTTGC 60.997 55.000 25.69 22.76 40.14 4.17
3000 3546 0.385473 GGATGCGAAACACGGTGTTG 60.385 55.000 25.69 15.67 40.14 3.33
3001 3547 0.816018 TGGATGCGAAACACGGTGTT 60.816 50.000 20.23 20.23 43.41 3.32
3002 3548 1.227704 TGGATGCGAAACACGGTGT 60.228 52.632 8.21 8.21 42.83 4.16
3003 3549 1.497278 CTGGATGCGAAACACGGTG 59.503 57.895 6.58 6.58 42.83 4.94
3004 3550 2.325082 GCTGGATGCGAAACACGGT 61.325 57.895 0.00 0.00 42.83 4.83
3005 3551 2.480555 GCTGGATGCGAAACACGG 59.519 61.111 0.00 0.00 42.83 4.94
3014 3560 2.848691 AGCAAGATCTTAGCTGGATGC 58.151 47.619 23.13 14.93 37.20 3.91
3015 3561 4.272991 GTCAAGCAAGATCTTAGCTGGATG 59.727 45.833 26.19 21.02 40.22 3.51
3016 3562 4.080695 TGTCAAGCAAGATCTTAGCTGGAT 60.081 41.667 26.19 14.10 40.22 3.41
3017 3563 3.261643 TGTCAAGCAAGATCTTAGCTGGA 59.738 43.478 23.95 23.27 38.86 3.86
3018 3564 3.603532 TGTCAAGCAAGATCTTAGCTGG 58.396 45.455 23.95 21.92 38.86 4.85
3019 3565 4.453478 TGTTGTCAAGCAAGATCTTAGCTG 59.547 41.667 23.95 18.98 38.86 4.24
3020 3566 4.645535 TGTTGTCAAGCAAGATCTTAGCT 58.354 39.130 20.08 20.08 41.03 3.32
3021 3567 4.671250 GCTGTTGTCAAGCAAGATCTTAGC 60.671 45.833 7.86 13.74 37.83 3.09
3022 3568 4.694509 AGCTGTTGTCAAGCAAGATCTTAG 59.305 41.667 7.86 4.20 37.83 2.18
3023 3569 4.645535 AGCTGTTGTCAAGCAAGATCTTA 58.354 39.130 7.86 0.00 37.83 2.10
3024 3570 3.484407 AGCTGTTGTCAAGCAAGATCTT 58.516 40.909 0.88 0.88 37.83 2.40
3025 3571 3.137446 AGCTGTTGTCAAGCAAGATCT 57.863 42.857 0.00 0.00 37.83 2.75
3026 3572 3.373439 CCTAGCTGTTGTCAAGCAAGATC 59.627 47.826 0.00 0.00 37.83 2.75
3027 3573 3.341823 CCTAGCTGTTGTCAAGCAAGAT 58.658 45.455 0.00 0.00 37.83 2.40
3028 3574 2.550855 CCCTAGCTGTTGTCAAGCAAGA 60.551 50.000 0.00 0.00 37.83 3.02
3029 3575 1.808945 CCCTAGCTGTTGTCAAGCAAG 59.191 52.381 0.00 0.00 37.83 4.01
3030 3576 1.545428 CCCCTAGCTGTTGTCAAGCAA 60.545 52.381 0.00 0.00 34.16 3.91
3031 3577 0.036732 CCCCTAGCTGTTGTCAAGCA 59.963 55.000 0.00 0.00 0.00 3.91
3032 3578 0.036875 ACCCCTAGCTGTTGTCAAGC 59.963 55.000 0.00 0.00 0.00 4.01
3033 3579 1.813513 CACCCCTAGCTGTTGTCAAG 58.186 55.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.