Multiple sequence alignment - TraesCS7A01G040200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G040200 chr7A 100.000 2549 0 0 1 2549 18189361 18191909 0.000000e+00 4708.0
1 TraesCS7A01G040200 chr7A 95.186 2015 60 11 569 2549 49208209 49210220 0.000000e+00 3149.0
2 TraesCS7A01G040200 chr7A 95.917 1151 30 8 565 1715 150203043 150201910 0.000000e+00 1849.0
3 TraesCS7A01G040200 chr7A 91.532 248 17 1 1 244 18186578 18186331 3.140000e-89 339.0
4 TraesCS7A01G040200 chr3A 96.971 1981 56 3 570 2549 719846459 719848436 0.000000e+00 3323.0
5 TraesCS7A01G040200 chr3A 94.466 2024 53 14 567 2549 683237676 683235671 0.000000e+00 3062.0
6 TraesCS7A01G040200 chr3A 92.917 240 15 1 6 243 714313303 714313064 5.220000e-92 348.0
7 TraesCS7A01G040200 chr3A 92.245 245 17 1 3 245 19311135 19311379 1.880000e-91 346.0
8 TraesCS7A01G040200 chr3A 90.945 254 16 4 3 250 688120699 688120447 4.060000e-88 335.0
9 TraesCS7A01G040200 chr2A 96.482 1990 63 6 562 2549 764220183 764222167 0.000000e+00 3280.0
10 TraesCS7A01G040200 chr2A 95.610 1982 64 6 569 2549 6302712 6300753 0.000000e+00 3157.0
11 TraesCS7A01G040200 chr2A 96.171 1149 38 3 567 1715 771778416 771779558 0.000000e+00 1873.0
12 TraesCS7A01G040200 chr2A 96.407 835 29 1 1716 2549 744583163 744583997 0.000000e+00 1375.0
13 TraesCS7A01G040200 chr2A 91.968 249 16 1 3 247 202075099 202075347 1.880000e-91 346.0
14 TraesCS7A01G040200 chr2A 92.245 245 15 1 3 243 695288138 695287894 6.750000e-91 344.0
15 TraesCS7A01G040200 chr2A 90.119 253 22 2 3 253 293050649 293050900 2.450000e-85 326.0
16 TraesCS7A01G040200 chr5A 97.205 1145 26 3 569 1713 563443929 563445067 0.000000e+00 1932.0
17 TraesCS7A01G040200 chr5A 96.894 837 21 4 1716 2549 563445102 563445936 0.000000e+00 1397.0
18 TraesCS7A01G040200 chr5A 91.532 248 17 1 1 244 401269435 401269188 3.140000e-89 339.0
19 TraesCS7A01G040200 chr1A 96.267 1152 36 2 568 1715 50511104 50512252 0.000000e+00 1882.0
20 TraesCS7A01G040200 chr1A 96.651 836 26 1 1716 2549 50512285 50513120 0.000000e+00 1387.0
21 TraesCS7A01G040200 chr1A 91.304 207 16 1 40 244 103311223 103311429 5.370000e-72 281.0
22 TraesCS7A01G040200 chr1A 92.632 190 10 1 3 188 131254605 131254416 1.160000e-68 270.0
23 TraesCS7A01G040200 chr1A 90.964 166 13 1 78 241 465431589 465431754 3.300000e-54 222.0
24 TraesCS7A01G040200 chr1A 90.132 152 8 4 92 241 539747354 539747208 9.310000e-45 191.0
25 TraesCS7A01G040200 chr1A 86.310 168 19 2 78 241 405822496 405822329 2.010000e-41 180.0
26 TraesCS7A01G040200 chr4A 95.815 1147 34 2 569 1715 29029001 29030133 0.000000e+00 1840.0
27 TraesCS7A01G040200 chr4A 92.339 248 12 3 3 243 539141474 539141227 1.880000e-91 346.0
28 TraesCS7A01G040200 chr4A 91.667 240 18 1 6 243 69964443 69964682 5.260000e-87 331.0
29 TraesCS7A01G040200 chr4A 88.889 243 23 1 3 241 612665071 612665313 1.920000e-76 296.0
30 TraesCS7A01G040200 chr4A 83.665 251 29 7 3 244 6479919 6479672 2.550000e-55 226.0
31 TraesCS7A01G040200 chrUn 94.943 1147 39 9 570 1715 43129528 43128400 0.000000e+00 1779.0
32 TraesCS7A01G040200 chrUn 94.939 1146 39 9 571 1715 231572793 231573920 0.000000e+00 1777.0
33 TraesCS7A01G040200 chrUn 88.664 247 23 2 3 244 150818929 150819175 1.920000e-76 296.0
34 TraesCS7A01G040200 chrUn 82.609 207 28 6 41 240 370576623 370576828 2.610000e-40 176.0
35 TraesCS7A01G040200 chrUn 80.420 143 28 0 102 244 84332442 84332300 2.680000e-20 110.0
36 TraesCS7A01G040200 chrUn 80.714 140 27 0 102 241 265279334 265279473 2.680000e-20 110.0
37 TraesCS7A01G040200 chrUn 79.528 127 25 1 119 245 23268425 23268300 3.490000e-14 89.8
38 TraesCS7A01G040200 chrUn 84.043 94 12 2 86 176 87265039 87265132 1.260000e-13 87.9
39 TraesCS7A01G040200 chr6A 96.705 880 24 3 1671 2549 14689817 14688942 0.000000e+00 1459.0
40 TraesCS7A01G040200 chr6A 92.411 224 15 1 1 222 119763109 119763332 4.090000e-83 318.0
41 TraesCS7A01G040200 chr6A 87.442 215 19 6 3 211 579138958 579139170 9.110000e-60 241.0
42 TraesCS7A01G040200 chr2D 85.238 210 25 4 41 245 73206486 73206694 7.140000e-51 211.0
43 TraesCS7A01G040200 chr3D 84.834 211 24 6 41 244 80217988 80217779 3.320000e-49 206.0
44 TraesCS7A01G040200 chr3D 84.466 206 24 6 43 241 45263307 45263103 2.000000e-46 196.0
45 TraesCS7A01G040200 chr5D 84.689 209 26 4 41 244 385443872 385444079 1.200000e-48 204.0
46 TraesCS7A01G040200 chr4D 82.775 209 30 4 41 244 439874820 439875027 5.600000e-42 182.0
47 TraesCS7A01G040200 chr4D 84.713 157 18 4 41 192 93441527 93441682 4.390000e-33 152.0
48 TraesCS7A01G040200 chr4D 87.402 127 16 0 118 244 46135463 46135337 2.040000e-31 147.0
49 TraesCS7A01G040200 chr4D 82.609 161 26 1 86 244 81327127 81326967 9.510000e-30 141.0
50 TraesCS7A01G040200 chr1D 84.756 164 22 2 82 243 334053342 334053180 7.300000e-36 161.0
51 TraesCS7A01G040200 chr1D 84.568 162 22 2 86 244 335079088 335079249 9.440000e-35 158.0
52 TraesCS7A01G040200 chr1D 84.810 158 22 2 86 241 464397308 464397151 9.440000e-35 158.0
53 TraesCS7A01G040200 chr6D 84.049 163 24 1 82 244 10674650 10674490 3.400000e-34 156.0
54 TraesCS7A01G040200 chr6D 83.019 159 22 4 86 241 30068502 30068658 3.420000e-29 139.0
55 TraesCS7A01G040200 chr6D 83.916 143 23 0 102 244 108453269 108453127 1.230000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G040200 chr7A 18189361 18191909 2548 False 4708.0 4708 100.0000 1 2549 1 chr7A.!!$F1 2548
1 TraesCS7A01G040200 chr7A 49208209 49210220 2011 False 3149.0 3149 95.1860 569 2549 1 chr7A.!!$F2 1980
2 TraesCS7A01G040200 chr7A 150201910 150203043 1133 True 1849.0 1849 95.9170 565 1715 1 chr7A.!!$R2 1150
3 TraesCS7A01G040200 chr3A 719846459 719848436 1977 False 3323.0 3323 96.9710 570 2549 1 chr3A.!!$F2 1979
4 TraesCS7A01G040200 chr3A 683235671 683237676 2005 True 3062.0 3062 94.4660 567 2549 1 chr3A.!!$R1 1982
5 TraesCS7A01G040200 chr2A 764220183 764222167 1984 False 3280.0 3280 96.4820 562 2549 1 chr2A.!!$F4 1987
6 TraesCS7A01G040200 chr2A 6300753 6302712 1959 True 3157.0 3157 95.6100 569 2549 1 chr2A.!!$R1 1980
7 TraesCS7A01G040200 chr2A 771778416 771779558 1142 False 1873.0 1873 96.1710 567 1715 1 chr2A.!!$F5 1148
8 TraesCS7A01G040200 chr2A 744583163 744583997 834 False 1375.0 1375 96.4070 1716 2549 1 chr2A.!!$F3 833
9 TraesCS7A01G040200 chr5A 563443929 563445936 2007 False 1664.5 1932 97.0495 569 2549 2 chr5A.!!$F1 1980
10 TraesCS7A01G040200 chr1A 50511104 50513120 2016 False 1634.5 1882 96.4590 568 2549 2 chr1A.!!$F3 1981
11 TraesCS7A01G040200 chr4A 29029001 29030133 1132 False 1840.0 1840 95.8150 569 1715 1 chr4A.!!$F1 1146
12 TraesCS7A01G040200 chrUn 43128400 43129528 1128 True 1779.0 1779 94.9430 570 1715 1 chrUn.!!$R2 1145
13 TraesCS7A01G040200 chrUn 231572793 231573920 1127 False 1777.0 1777 94.9390 571 1715 1 chrUn.!!$F3 1144
14 TraesCS7A01G040200 chr6A 14688942 14689817 875 True 1459.0 1459 96.7050 1671 2549 1 chr6A.!!$R1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 455 0.034616 GAGACAGCCTGCACAAGAGT 59.965 55.0 0.00 0.0 0.0 3.24 F
1160 1204 0.242555 TACGTGTGCAGCGAGAATGA 59.757 50.0 16.16 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 1299 0.960364 GCCAGAGCATCGACCCAAAA 60.960 55.000 0.0 0.0 42.67 2.44 R
2025 2129 1.276989 CCTGGCGTAAACCTCTACCAA 59.723 52.381 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 8.662369 CATTTTGTGTTGAAAAATGCCATATG 57.338 30.769 8.25 0.00 43.91 1.78
67 68 5.859521 TTGTGTTGAAAAATGCCATATGC 57.140 34.783 0.00 0.00 41.77 3.14
77 78 3.580904 GCCATATGCAATGCACAGG 57.419 52.632 11.23 13.84 43.04 4.00
78 79 0.599204 GCCATATGCAATGCACAGGC 60.599 55.000 24.41 24.41 43.04 4.85
79 80 0.318360 CCATATGCAATGCACAGGCG 60.318 55.000 11.23 0.00 43.04 5.52
80 81 0.318360 CATATGCAATGCACAGGCGG 60.318 55.000 11.23 0.00 43.04 6.13
81 82 1.457823 ATATGCAATGCACAGGCGGG 61.458 55.000 11.23 0.00 43.04 6.13
82 83 2.835317 TATGCAATGCACAGGCGGGT 62.835 55.000 11.23 0.00 43.04 5.28
83 84 4.120331 GCAATGCACAGGCGGGTC 62.120 66.667 0.00 0.00 45.35 4.46
84 85 2.672651 CAATGCACAGGCGGGTCA 60.673 61.111 0.00 0.00 45.35 4.02
85 86 2.672996 AATGCACAGGCGGGTCAC 60.673 61.111 0.00 0.00 45.35 3.67
97 98 3.726517 GGTCACGCGCACTGCATT 61.727 61.111 5.73 0.00 46.97 3.56
98 99 2.252260 GTCACGCGCACTGCATTT 59.748 55.556 5.73 0.00 46.97 2.32
99 100 1.370414 GTCACGCGCACTGCATTTT 60.370 52.632 5.73 0.00 46.97 1.82
100 101 0.110419 GTCACGCGCACTGCATTTTA 60.110 50.000 5.73 0.00 46.97 1.52
101 102 0.165727 TCACGCGCACTGCATTTTAG 59.834 50.000 5.73 0.00 46.97 1.85
102 103 1.154225 ACGCGCACTGCATTTTAGC 60.154 52.632 5.73 0.00 46.97 3.09
104 105 3.666730 CGCACTGCATTTTAGCGC 58.333 55.556 0.00 0.00 41.95 5.92
105 106 2.210375 CGCACTGCATTTTAGCGCG 61.210 57.895 0.00 0.00 41.95 6.86
106 107 2.499603 GCACTGCATTTTAGCGCGC 61.500 57.895 26.66 26.66 37.31 6.86
107 108 1.135315 CACTGCATTTTAGCGCGCT 59.865 52.632 38.01 38.01 37.31 5.92
108 109 1.129879 CACTGCATTTTAGCGCGCTG 61.130 55.000 41.85 26.94 37.31 5.18
109 110 2.202466 TGCATTTTAGCGCGCTGC 60.202 55.556 41.85 34.63 46.98 5.25
133 134 2.097538 GACGCGCGCTGCATTTTA 59.902 55.556 32.58 0.00 46.97 1.52
134 135 1.929714 GACGCGCGCTGCATTTTAG 60.930 57.895 32.58 12.54 46.97 1.85
135 136 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
180 181 3.434319 CGCGCCAAACCAGCTGAT 61.434 61.111 17.39 0.00 0.00 2.90
181 182 2.180017 GCGCCAAACCAGCTGATG 59.820 61.111 17.39 11.04 0.00 3.07
182 183 2.180017 CGCCAAACCAGCTGATGC 59.820 61.111 17.39 8.91 40.05 3.91
183 184 2.180017 GCCAAACCAGCTGATGCG 59.820 61.111 17.39 0.00 45.42 4.73
184 185 2.180017 CCAAACCAGCTGATGCGC 59.820 61.111 17.39 0.00 45.42 6.09
185 186 2.202388 CAAACCAGCTGATGCGCG 60.202 61.111 17.39 0.00 45.42 6.86
186 187 4.107051 AAACCAGCTGATGCGCGC 62.107 61.111 27.26 27.26 45.42 6.86
197 198 4.889856 TGCGCGCGAGGCATATGT 62.890 61.111 37.18 0.00 43.84 2.29
198 199 4.360027 GCGCGCGAGGCATATGTG 62.360 66.667 37.18 0.00 43.84 3.21
199 200 2.961721 CGCGCGAGGCATATGTGT 60.962 61.111 28.94 0.00 43.84 3.72
200 201 2.525248 CGCGCGAGGCATATGTGTT 61.525 57.895 28.94 0.00 43.84 3.32
201 202 1.721487 GCGCGAGGCATATGTGTTT 59.279 52.632 12.10 0.00 42.87 2.83
202 203 0.098728 GCGCGAGGCATATGTGTTTT 59.901 50.000 12.10 0.00 42.87 2.43
203 204 1.467374 GCGCGAGGCATATGTGTTTTT 60.467 47.619 12.10 0.00 42.87 1.94
230 231 4.383602 CACGACCGGCGCCTTTTG 62.384 66.667 26.68 16.87 46.04 2.44
233 234 3.431725 GACCGGCGCCTTTTGGAG 61.432 66.667 26.68 6.56 44.07 3.86
234 235 3.894547 GACCGGCGCCTTTTGGAGA 62.895 63.158 26.68 0.00 42.35 3.71
235 236 2.438434 CCGGCGCCTTTTGGAGAT 60.438 61.111 26.68 0.00 42.35 2.75
236 237 2.764314 CCGGCGCCTTTTGGAGATG 61.764 63.158 26.68 4.04 42.35 2.90
237 238 2.491621 GGCGCCTTTTGGAGATGC 59.508 61.111 22.15 0.00 42.35 3.91
238 239 2.048603 GGCGCCTTTTGGAGATGCT 61.049 57.895 22.15 0.00 42.35 3.79
239 240 1.431036 GCGCCTTTTGGAGATGCTC 59.569 57.895 0.00 0.00 42.35 4.26
240 241 1.028868 GCGCCTTTTGGAGATGCTCT 61.029 55.000 0.00 0.00 42.35 4.09
241 242 1.457346 CGCCTTTTGGAGATGCTCTT 58.543 50.000 0.00 0.00 42.35 2.85
242 243 2.632377 CGCCTTTTGGAGATGCTCTTA 58.368 47.619 0.00 0.00 42.35 2.10
243 244 2.611292 CGCCTTTTGGAGATGCTCTTAG 59.389 50.000 0.00 0.00 42.35 2.18
244 245 3.615155 GCCTTTTGGAGATGCTCTTAGT 58.385 45.455 0.00 0.00 44.07 2.24
245 246 3.625313 GCCTTTTGGAGATGCTCTTAGTC 59.375 47.826 0.00 0.00 44.07 2.59
246 247 3.868077 CCTTTTGGAGATGCTCTTAGTCG 59.132 47.826 0.00 0.00 44.07 4.18
247 248 3.526931 TTTGGAGATGCTCTTAGTCGG 57.473 47.619 0.00 0.00 0.00 4.79
248 249 0.747255 TGGAGATGCTCTTAGTCGGC 59.253 55.000 0.00 0.00 0.00 5.54
249 250 0.318275 GGAGATGCTCTTAGTCGGCG 60.318 60.000 0.00 0.00 0.00 6.46
250 251 0.318275 GAGATGCTCTTAGTCGGCGG 60.318 60.000 7.21 0.00 0.00 6.13
251 252 1.300233 GATGCTCTTAGTCGGCGGG 60.300 63.158 7.21 0.00 0.00 6.13
252 253 2.017559 GATGCTCTTAGTCGGCGGGT 62.018 60.000 7.21 0.00 0.00 5.28
253 254 2.202756 GCTCTTAGTCGGCGGGTG 60.203 66.667 7.21 0.00 0.00 4.61
254 255 2.494918 CTCTTAGTCGGCGGGTGG 59.505 66.667 7.21 0.00 0.00 4.61
255 256 3.072468 TCTTAGTCGGCGGGTGGG 61.072 66.667 7.21 0.00 0.00 4.61
256 257 3.387947 CTTAGTCGGCGGGTGGGT 61.388 66.667 7.21 0.00 0.00 4.51
257 258 2.924101 TTAGTCGGCGGGTGGGTT 60.924 61.111 7.21 0.00 0.00 4.11
258 259 3.242897 TTAGTCGGCGGGTGGGTTG 62.243 63.158 7.21 0.00 0.00 3.77
267 268 3.991318 GGTGGGTTGGGCATGGGA 61.991 66.667 0.00 0.00 0.00 4.37
268 269 2.362889 GTGGGTTGGGCATGGGAG 60.363 66.667 0.00 0.00 0.00 4.30
269 270 2.534011 TGGGTTGGGCATGGGAGA 60.534 61.111 0.00 0.00 0.00 3.71
270 271 2.276740 GGGTTGGGCATGGGAGAG 59.723 66.667 0.00 0.00 0.00 3.20
271 272 2.440980 GGTTGGGCATGGGAGAGC 60.441 66.667 0.00 0.00 0.00 4.09
272 273 2.679716 GTTGGGCATGGGAGAGCT 59.320 61.111 0.00 0.00 0.00 4.09
273 274 1.452833 GTTGGGCATGGGAGAGCTC 60.453 63.158 5.27 5.27 0.00 4.09
274 275 3.035173 TTGGGCATGGGAGAGCTCG 62.035 63.158 8.37 0.00 32.70 5.03
275 276 3.474570 GGGCATGGGAGAGCTCGT 61.475 66.667 8.37 0.00 0.00 4.18
276 277 2.107953 GGCATGGGAGAGCTCGTC 59.892 66.667 8.37 6.36 0.00 4.20
277 278 2.107953 GCATGGGAGAGCTCGTCC 59.892 66.667 18.67 18.67 0.00 4.79
278 279 2.725312 GCATGGGAGAGCTCGTCCA 61.725 63.158 25.72 25.72 35.57 4.02
279 280 1.440893 CATGGGAGAGCTCGTCCAG 59.559 63.158 26.75 18.26 35.57 3.86
280 281 1.760086 ATGGGAGAGCTCGTCCAGG 60.760 63.158 26.75 0.00 35.57 4.45
281 282 2.363147 GGGAGAGCTCGTCCAGGT 60.363 66.667 24.59 2.29 35.57 4.00
282 283 1.985116 GGGAGAGCTCGTCCAGGTT 60.985 63.158 24.59 1.61 35.57 3.50
283 284 1.513622 GGAGAGCTCGTCCAGGTTC 59.486 63.158 20.79 6.98 33.84 3.62
284 285 1.137825 GAGAGCTCGTCCAGGTTCG 59.862 63.158 8.37 0.00 30.88 3.95
285 286 1.303398 AGAGCTCGTCCAGGTTCGA 60.303 57.895 8.37 8.65 30.88 3.71
286 287 0.894184 AGAGCTCGTCCAGGTTCGAA 60.894 55.000 8.37 0.00 35.69 3.71
287 288 0.456995 GAGCTCGTCCAGGTTCGAAG 60.457 60.000 0.00 0.00 35.69 3.79
288 289 2.095252 GCTCGTCCAGGTTCGAAGC 61.095 63.158 19.40 19.40 35.69 3.86
289 290 1.289066 CTCGTCCAGGTTCGAAGCA 59.711 57.895 27.46 5.95 35.69 3.91
290 291 0.319555 CTCGTCCAGGTTCGAAGCAA 60.320 55.000 27.46 11.03 35.69 3.91
291 292 0.599204 TCGTCCAGGTTCGAAGCAAC 60.599 55.000 27.46 19.85 33.13 4.17
292 293 1.566018 CGTCCAGGTTCGAAGCAACC 61.566 60.000 27.46 12.86 45.66 3.77
296 297 3.733960 GGTTCGAAGCAACCGGGC 61.734 66.667 21.83 0.00 36.69 6.13
297 298 4.084888 GTTCGAAGCAACCGGGCG 62.085 66.667 6.32 0.00 39.27 6.13
313 314 2.512515 CGGAGCACTGGCCTAAGC 60.513 66.667 3.32 4.87 42.56 3.09
314 315 2.993853 GGAGCACTGGCCTAAGCT 59.006 61.111 14.73 14.73 42.56 3.74
315 316 1.451028 GGAGCACTGGCCTAAGCTG 60.451 63.158 18.71 5.08 42.56 4.24
316 317 2.045536 AGCACTGGCCTAAGCTGC 60.046 61.111 14.18 11.10 42.56 5.25
317 318 2.360350 GCACTGGCCTAAGCTGCA 60.360 61.111 3.32 0.00 39.73 4.41
318 319 2.694760 GCACTGGCCTAAGCTGCAC 61.695 63.158 3.32 0.00 39.73 4.57
319 320 1.002868 CACTGGCCTAAGCTGCACT 60.003 57.895 3.32 0.00 39.73 4.40
320 321 1.023513 CACTGGCCTAAGCTGCACTC 61.024 60.000 3.32 0.00 39.73 3.51
321 322 1.297689 CTGGCCTAAGCTGCACTCA 59.702 57.895 3.32 0.00 39.73 3.41
322 323 0.321919 CTGGCCTAAGCTGCACTCAA 60.322 55.000 3.32 0.00 39.73 3.02
323 324 0.321919 TGGCCTAAGCTGCACTCAAG 60.322 55.000 3.32 0.00 39.73 3.02
324 325 0.322008 GGCCTAAGCTGCACTCAAGT 60.322 55.000 1.02 0.00 39.73 3.16
325 326 1.528129 GCCTAAGCTGCACTCAAGTT 58.472 50.000 1.02 0.00 35.50 2.66
326 327 1.198637 GCCTAAGCTGCACTCAAGTTG 59.801 52.381 1.02 0.00 35.50 3.16
327 328 2.498167 CCTAAGCTGCACTCAAGTTGT 58.502 47.619 1.02 0.00 0.00 3.32
328 329 2.880890 CCTAAGCTGCACTCAAGTTGTT 59.119 45.455 1.02 0.00 0.00 2.83
329 330 3.316308 CCTAAGCTGCACTCAAGTTGTTT 59.684 43.478 1.02 0.00 0.00 2.83
330 331 2.857592 AGCTGCACTCAAGTTGTTTG 57.142 45.000 1.02 2.67 38.17 2.93
331 332 1.406539 AGCTGCACTCAAGTTGTTTGG 59.593 47.619 1.02 0.00 37.39 3.28
332 333 1.843992 CTGCACTCAAGTTGTTTGGC 58.156 50.000 2.11 4.00 37.39 4.52
333 334 1.406539 CTGCACTCAAGTTGTTTGGCT 59.593 47.619 2.11 0.00 37.39 4.75
334 335 1.405105 TGCACTCAAGTTGTTTGGCTC 59.595 47.619 2.11 0.00 37.39 4.70
335 336 1.269257 GCACTCAAGTTGTTTGGCTCC 60.269 52.381 2.11 0.00 37.39 4.70
336 337 1.002468 CACTCAAGTTGTTTGGCTCCG 60.002 52.381 2.11 0.00 37.39 4.63
337 338 0.593128 CTCAAGTTGTTTGGCTCCGG 59.407 55.000 2.11 0.00 37.39 5.14
338 339 1.007387 CAAGTTGTTTGGCTCCGGC 60.007 57.895 0.00 0.00 32.95 6.13
339 340 1.152756 AAGTTGTTTGGCTCCGGCT 60.153 52.632 0.00 0.00 38.73 5.52
340 341 1.172812 AAGTTGTTTGGCTCCGGCTC 61.173 55.000 0.00 0.00 38.73 4.70
341 342 2.282180 TTGTTTGGCTCCGGCTCC 60.282 61.111 0.00 0.00 38.73 4.70
342 343 2.829384 TTGTTTGGCTCCGGCTCCT 61.829 57.895 12.15 0.00 38.73 3.69
343 344 2.034221 GTTTGGCTCCGGCTCCTT 59.966 61.111 12.15 0.00 38.73 3.36
344 345 1.298667 GTTTGGCTCCGGCTCCTTA 59.701 57.895 12.15 0.00 38.73 2.69
345 346 0.107165 GTTTGGCTCCGGCTCCTTAT 60.107 55.000 12.15 0.00 38.73 1.73
346 347 0.623723 TTTGGCTCCGGCTCCTTATT 59.376 50.000 12.15 0.00 38.73 1.40
347 348 0.623723 TTGGCTCCGGCTCCTTATTT 59.376 50.000 12.15 0.00 38.73 1.40
348 349 0.623723 TGGCTCCGGCTCCTTATTTT 59.376 50.000 12.15 0.00 38.73 1.82
349 350 1.005450 TGGCTCCGGCTCCTTATTTTT 59.995 47.619 12.15 0.00 38.73 1.94
350 351 1.676529 GGCTCCGGCTCCTTATTTTTC 59.323 52.381 0.00 0.00 38.73 2.29
351 352 2.644676 GCTCCGGCTCCTTATTTTTCT 58.355 47.619 0.00 0.00 35.22 2.52
352 353 3.433173 GGCTCCGGCTCCTTATTTTTCTA 60.433 47.826 0.00 0.00 38.73 2.10
353 354 3.810386 GCTCCGGCTCCTTATTTTTCTAG 59.190 47.826 0.00 0.00 35.22 2.43
354 355 3.805207 TCCGGCTCCTTATTTTTCTAGC 58.195 45.455 0.00 0.00 0.00 3.42
355 356 3.199071 TCCGGCTCCTTATTTTTCTAGCA 59.801 43.478 0.00 0.00 0.00 3.49
356 357 3.561725 CCGGCTCCTTATTTTTCTAGCAG 59.438 47.826 0.00 0.00 0.00 4.24
357 358 3.561725 CGGCTCCTTATTTTTCTAGCAGG 59.438 47.826 0.00 0.00 0.00 4.85
358 359 4.683400 CGGCTCCTTATTTTTCTAGCAGGA 60.683 45.833 0.00 0.00 0.00 3.86
360 361 5.432645 GCTCCTTATTTTTCTAGCAGGAGT 58.567 41.667 13.29 0.00 46.36 3.85
361 362 5.295540 GCTCCTTATTTTTCTAGCAGGAGTG 59.704 44.000 13.29 0.00 46.36 3.51
375 376 3.737850 CAGGAGTGCAAGACTTCTTTCT 58.262 45.455 0.00 0.00 37.18 2.52
376 377 3.497640 CAGGAGTGCAAGACTTCTTTCTG 59.502 47.826 0.00 0.00 37.18 3.02
377 378 2.810852 GGAGTGCAAGACTTCTTTCTGG 59.189 50.000 0.00 0.00 33.83 3.86
378 379 2.810852 GAGTGCAAGACTTCTTTCTGGG 59.189 50.000 0.00 0.00 33.83 4.45
379 380 1.882623 GTGCAAGACTTCTTTCTGGGG 59.117 52.381 0.00 0.00 33.11 4.96
380 381 1.774254 TGCAAGACTTCTTTCTGGGGA 59.226 47.619 0.00 0.00 33.11 4.81
381 382 2.155279 GCAAGACTTCTTTCTGGGGAC 58.845 52.381 0.00 0.00 33.11 4.46
382 383 2.224646 GCAAGACTTCTTTCTGGGGACT 60.225 50.000 0.00 0.00 33.11 3.85
383 384 3.748989 GCAAGACTTCTTTCTGGGGACTT 60.749 47.826 0.00 0.00 33.11 3.01
384 385 3.778954 AGACTTCTTTCTGGGGACTTG 57.221 47.619 0.00 0.00 0.00 3.16
385 386 3.049344 AGACTTCTTTCTGGGGACTTGT 58.951 45.455 0.00 0.00 0.00 3.16
386 387 3.071747 AGACTTCTTTCTGGGGACTTGTC 59.928 47.826 0.00 0.00 0.00 3.18
387 388 3.049344 ACTTCTTTCTGGGGACTTGTCT 58.951 45.455 0.61 0.00 0.00 3.41
388 389 4.232091 ACTTCTTTCTGGGGACTTGTCTA 58.768 43.478 0.61 0.00 0.00 2.59
389 390 4.846940 ACTTCTTTCTGGGGACTTGTCTAT 59.153 41.667 0.61 0.00 0.00 1.98
390 391 5.310857 ACTTCTTTCTGGGGACTTGTCTATT 59.689 40.000 0.61 0.00 0.00 1.73
391 392 6.500751 ACTTCTTTCTGGGGACTTGTCTATTA 59.499 38.462 0.61 0.00 0.00 0.98
392 393 6.295719 TCTTTCTGGGGACTTGTCTATTAC 57.704 41.667 0.61 0.00 0.00 1.89
393 394 6.023603 TCTTTCTGGGGACTTGTCTATTACT 58.976 40.000 0.61 0.00 0.00 2.24
394 395 5.677319 TTCTGGGGACTTGTCTATTACTG 57.323 43.478 0.61 0.00 0.00 2.74
395 396 3.451178 TCTGGGGACTTGTCTATTACTGC 59.549 47.826 0.61 0.00 0.00 4.40
396 397 2.167693 TGGGGACTTGTCTATTACTGCG 59.832 50.000 0.61 0.00 0.00 5.18
397 398 2.429610 GGGGACTTGTCTATTACTGCGA 59.570 50.000 0.61 0.00 0.00 5.10
398 399 3.491104 GGGGACTTGTCTATTACTGCGAG 60.491 52.174 0.61 0.00 0.00 5.03
399 400 3.380637 GGGACTTGTCTATTACTGCGAGA 59.619 47.826 0.61 0.00 0.00 4.04
400 401 4.352887 GGACTTGTCTATTACTGCGAGAC 58.647 47.826 0.61 0.00 40.07 3.36
401 402 4.352887 GACTTGTCTATTACTGCGAGACC 58.647 47.826 0.00 0.00 39.10 3.85
402 403 3.130693 ACTTGTCTATTACTGCGAGACCC 59.869 47.826 0.00 0.00 39.10 4.46
403 404 1.674441 TGTCTATTACTGCGAGACCCG 59.326 52.381 0.00 0.00 39.10 5.28
404 405 1.945394 GTCTATTACTGCGAGACCCGA 59.055 52.381 0.00 0.00 41.76 5.14
405 406 2.031857 GTCTATTACTGCGAGACCCGAG 60.032 54.545 0.00 0.00 41.76 4.63
406 407 2.158856 TCTATTACTGCGAGACCCGAGA 60.159 50.000 0.00 0.00 41.76 4.04
407 408 0.739561 ATTACTGCGAGACCCGAGAC 59.260 55.000 0.00 0.00 41.76 3.36
408 409 0.322277 TTACTGCGAGACCCGAGACT 60.322 55.000 0.00 0.00 41.76 3.24
409 410 0.322277 TACTGCGAGACCCGAGACTT 60.322 55.000 0.00 0.00 41.76 3.01
410 411 1.179814 ACTGCGAGACCCGAGACTTT 61.180 55.000 0.00 0.00 41.76 2.66
411 412 0.456995 CTGCGAGACCCGAGACTTTC 60.457 60.000 0.00 0.00 41.76 2.62
412 413 1.153804 GCGAGACCCGAGACTTTCC 60.154 63.158 0.00 0.00 41.76 3.13
413 414 1.511768 CGAGACCCGAGACTTTCCC 59.488 63.158 0.00 0.00 41.76 3.97
414 415 0.966370 CGAGACCCGAGACTTTCCCT 60.966 60.000 0.00 0.00 41.76 4.20
415 416 0.818938 GAGACCCGAGACTTTCCCTC 59.181 60.000 0.00 0.00 0.00 4.30
416 417 0.114560 AGACCCGAGACTTTCCCTCA 59.885 55.000 0.00 0.00 0.00 3.86
417 418 0.974383 GACCCGAGACTTTCCCTCAA 59.026 55.000 0.00 0.00 0.00 3.02
418 419 1.346722 GACCCGAGACTTTCCCTCAAA 59.653 52.381 0.00 0.00 0.00 2.69
419 420 1.772453 ACCCGAGACTTTCCCTCAAAA 59.228 47.619 0.00 0.00 0.00 2.44
420 421 2.173996 ACCCGAGACTTTCCCTCAAAAA 59.826 45.455 0.00 0.00 0.00 1.94
442 443 2.301577 AAATGCTAGTCCGAGACAGC 57.698 50.000 14.95 14.95 37.29 4.40
443 444 0.461961 AATGCTAGTCCGAGACAGCC 59.538 55.000 17.09 4.66 36.57 4.85
444 445 0.396417 ATGCTAGTCCGAGACAGCCT 60.396 55.000 17.09 10.33 36.57 4.58
445 446 1.315981 TGCTAGTCCGAGACAGCCTG 61.316 60.000 17.09 0.00 36.57 4.85
446 447 1.435515 CTAGTCCGAGACAGCCTGC 59.564 63.158 0.00 0.00 34.60 4.85
447 448 1.304134 TAGTCCGAGACAGCCTGCA 60.304 57.895 0.00 0.00 34.60 4.41
448 449 1.595993 TAGTCCGAGACAGCCTGCAC 61.596 60.000 0.00 0.00 34.60 4.57
449 450 2.917227 TCCGAGACAGCCTGCACA 60.917 61.111 0.00 0.00 0.00 4.57
450 451 2.031012 CCGAGACAGCCTGCACAA 59.969 61.111 0.00 0.00 0.00 3.33
451 452 2.031516 CCGAGACAGCCTGCACAAG 61.032 63.158 0.00 0.00 0.00 3.16
452 453 1.005748 CGAGACAGCCTGCACAAGA 60.006 57.895 0.00 0.00 0.00 3.02
453 454 1.013005 CGAGACAGCCTGCACAAGAG 61.013 60.000 0.00 0.00 0.00 2.85
454 455 0.034616 GAGACAGCCTGCACAAGAGT 59.965 55.000 0.00 0.00 0.00 3.24
455 456 0.471617 AGACAGCCTGCACAAGAGTT 59.528 50.000 0.00 0.00 0.00 3.01
456 457 1.133976 AGACAGCCTGCACAAGAGTTT 60.134 47.619 0.00 0.00 0.00 2.66
457 458 1.678101 GACAGCCTGCACAAGAGTTTT 59.322 47.619 0.00 0.00 0.00 2.43
458 459 2.099756 GACAGCCTGCACAAGAGTTTTT 59.900 45.455 0.00 0.00 0.00 1.94
459 460 2.159198 ACAGCCTGCACAAGAGTTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
460 461 2.102578 AGCCTGCACAAGAGTTTTTGT 58.897 42.857 0.00 0.00 41.77 2.83
461 462 2.497273 AGCCTGCACAAGAGTTTTTGTT 59.503 40.909 0.00 0.00 39.17 2.83
462 463 3.699038 AGCCTGCACAAGAGTTTTTGTTA 59.301 39.130 0.00 0.00 39.17 2.41
463 464 4.342092 AGCCTGCACAAGAGTTTTTGTTAT 59.658 37.500 0.00 0.00 39.17 1.89
464 465 5.049828 GCCTGCACAAGAGTTTTTGTTATT 58.950 37.500 0.00 0.00 39.17 1.40
465 466 5.175673 GCCTGCACAAGAGTTTTTGTTATTC 59.824 40.000 0.00 0.00 39.17 1.75
466 467 5.691754 CCTGCACAAGAGTTTTTGTTATTCC 59.308 40.000 0.00 0.00 39.17 3.01
467 468 5.277825 TGCACAAGAGTTTTTGTTATTCCG 58.722 37.500 0.00 0.00 39.17 4.30
468 469 4.679654 GCACAAGAGTTTTTGTTATTCCGG 59.320 41.667 0.00 0.00 39.17 5.14
469 470 4.679654 CACAAGAGTTTTTGTTATTCCGGC 59.320 41.667 0.00 0.00 39.17 6.13
470 471 4.583073 ACAAGAGTTTTTGTTATTCCGGCT 59.417 37.500 0.00 0.00 38.05 5.52
471 472 5.068591 ACAAGAGTTTTTGTTATTCCGGCTT 59.931 36.000 0.00 0.00 38.05 4.35
472 473 5.121221 AGAGTTTTTGTTATTCCGGCTTG 57.879 39.130 0.00 0.00 0.00 4.01
473 474 4.583073 AGAGTTTTTGTTATTCCGGCTTGT 59.417 37.500 0.00 0.00 0.00 3.16
474 475 5.766174 AGAGTTTTTGTTATTCCGGCTTGTA 59.234 36.000 0.00 0.00 0.00 2.41
475 476 5.765176 AGTTTTTGTTATTCCGGCTTGTAC 58.235 37.500 0.00 0.00 0.00 2.90
476 477 5.299782 AGTTTTTGTTATTCCGGCTTGTACA 59.700 36.000 0.00 0.00 0.00 2.90
477 478 5.968528 TTTTGTTATTCCGGCTTGTACAT 57.031 34.783 0.00 0.00 0.00 2.29
478 479 7.175293 AGTTTTTGTTATTCCGGCTTGTACATA 59.825 33.333 0.00 0.00 0.00 2.29
479 480 7.633193 TTTTGTTATTCCGGCTTGTACATAT 57.367 32.000 0.00 0.00 0.00 1.78
480 481 6.854496 TTGTTATTCCGGCTTGTACATATC 57.146 37.500 0.00 0.00 0.00 1.63
481 482 6.169557 TGTTATTCCGGCTTGTACATATCT 57.830 37.500 0.00 0.00 0.00 1.98
482 483 6.588204 TGTTATTCCGGCTTGTACATATCTT 58.412 36.000 0.00 0.00 0.00 2.40
483 484 6.704493 TGTTATTCCGGCTTGTACATATCTTC 59.296 38.462 0.00 0.00 0.00 2.87
484 485 5.552870 ATTCCGGCTTGTACATATCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
485 486 5.353394 TTCCGGCTTGTACATATCTTCTT 57.647 39.130 0.00 0.00 0.00 2.52
486 487 4.945246 TCCGGCTTGTACATATCTTCTTC 58.055 43.478 0.00 0.00 0.00 2.87
487 488 4.058817 CCGGCTTGTACATATCTTCTTCC 58.941 47.826 0.00 0.00 0.00 3.46
488 489 4.442893 CCGGCTTGTACATATCTTCTTCCA 60.443 45.833 0.00 0.00 0.00 3.53
489 490 4.508124 CGGCTTGTACATATCTTCTTCCAC 59.492 45.833 0.00 0.00 0.00 4.02
490 491 5.675538 GGCTTGTACATATCTTCTTCCACT 58.324 41.667 0.00 0.00 0.00 4.00
491 492 5.755861 GGCTTGTACATATCTTCTTCCACTC 59.244 44.000 0.00 0.00 0.00 3.51
492 493 5.755861 GCTTGTACATATCTTCTTCCACTCC 59.244 44.000 0.00 0.00 0.00 3.85
493 494 6.630413 GCTTGTACATATCTTCTTCCACTCCA 60.630 42.308 0.00 0.00 0.00 3.86
494 495 6.867519 TGTACATATCTTCTTCCACTCCAA 57.132 37.500 0.00 0.00 0.00 3.53
495 496 6.640518 TGTACATATCTTCTTCCACTCCAAC 58.359 40.000 0.00 0.00 0.00 3.77
496 497 5.762179 ACATATCTTCTTCCACTCCAACA 57.238 39.130 0.00 0.00 0.00 3.33
497 498 5.738909 ACATATCTTCTTCCACTCCAACAG 58.261 41.667 0.00 0.00 0.00 3.16
498 499 5.485353 ACATATCTTCTTCCACTCCAACAGA 59.515 40.000 0.00 0.00 0.00 3.41
500 501 3.576861 TCTTCTTCCACTCCAACAGAGA 58.423 45.455 0.00 0.00 46.50 3.10
501 502 3.967326 TCTTCTTCCACTCCAACAGAGAA 59.033 43.478 0.00 0.00 46.50 2.87
502 503 4.408921 TCTTCTTCCACTCCAACAGAGAAA 59.591 41.667 0.00 0.00 46.50 2.52
503 504 4.771114 TCTTCCACTCCAACAGAGAAAA 57.229 40.909 0.00 0.00 46.50 2.29
504 505 4.708177 TCTTCCACTCCAACAGAGAAAAG 58.292 43.478 0.00 0.00 46.50 2.27
505 506 3.492102 TCCACTCCAACAGAGAAAAGG 57.508 47.619 0.00 0.00 46.50 3.11
506 507 2.777692 TCCACTCCAACAGAGAAAAGGT 59.222 45.455 0.00 0.00 46.50 3.50
507 508 3.971305 TCCACTCCAACAGAGAAAAGGTA 59.029 43.478 0.00 0.00 46.50 3.08
508 509 4.065789 CCACTCCAACAGAGAAAAGGTAC 58.934 47.826 0.00 0.00 46.50 3.34
509 510 4.444306 CCACTCCAACAGAGAAAAGGTACA 60.444 45.833 0.00 0.00 46.50 2.90
510 511 5.123227 CACTCCAACAGAGAAAAGGTACAA 58.877 41.667 0.00 0.00 46.50 2.41
511 512 5.588648 CACTCCAACAGAGAAAAGGTACAAA 59.411 40.000 0.00 0.00 46.50 2.83
512 513 5.823045 ACTCCAACAGAGAAAAGGTACAAAG 59.177 40.000 0.00 0.00 46.50 2.77
513 514 5.996644 TCCAACAGAGAAAAGGTACAAAGA 58.003 37.500 0.00 0.00 0.00 2.52
514 515 6.055588 TCCAACAGAGAAAAGGTACAAAGAG 58.944 40.000 0.00 0.00 0.00 2.85
515 516 5.278022 CCAACAGAGAAAAGGTACAAAGAGC 60.278 44.000 0.00 0.00 0.00 4.09
516 517 5.036117 ACAGAGAAAAGGTACAAAGAGCA 57.964 39.130 0.00 0.00 0.00 4.26
517 518 5.059833 ACAGAGAAAAGGTACAAAGAGCAG 58.940 41.667 0.00 0.00 0.00 4.24
518 519 5.059833 CAGAGAAAAGGTACAAAGAGCAGT 58.940 41.667 0.00 0.00 0.00 4.40
519 520 5.529060 CAGAGAAAAGGTACAAAGAGCAGTT 59.471 40.000 0.00 0.00 0.00 3.16
520 521 6.038714 CAGAGAAAAGGTACAAAGAGCAGTTT 59.961 38.462 0.00 0.00 0.00 2.66
521 522 6.261158 AGAGAAAAGGTACAAAGAGCAGTTTC 59.739 38.462 0.00 0.00 0.00 2.78
522 523 6.122964 AGAAAAGGTACAAAGAGCAGTTTCT 58.877 36.000 0.00 0.00 32.79 2.52
523 524 6.603599 AGAAAAGGTACAAAGAGCAGTTTCTT 59.396 34.615 0.00 0.00 39.03 2.52
524 525 5.757850 AAGGTACAAAGAGCAGTTTCTTG 57.242 39.130 0.00 0.00 37.48 3.02
525 526 3.565902 AGGTACAAAGAGCAGTTTCTTGC 59.434 43.478 0.00 0.00 44.41 4.01
535 536 4.234530 GCAGTTTCTTGCTTTGTGATCT 57.765 40.909 0.00 0.00 40.89 2.75
536 537 4.225208 GCAGTTTCTTGCTTTGTGATCTC 58.775 43.478 0.00 0.00 40.89 2.75
537 538 4.261322 GCAGTTTCTTGCTTTGTGATCTCA 60.261 41.667 0.00 0.00 40.89 3.27
538 539 5.210715 CAGTTTCTTGCTTTGTGATCTCAC 58.789 41.667 3.34 3.34 46.59 3.51
539 540 5.008415 CAGTTTCTTGCTTTGTGATCTCACT 59.992 40.000 11.35 0.00 46.55 3.41
540 541 5.008415 AGTTTCTTGCTTTGTGATCTCACTG 59.992 40.000 11.35 3.76 46.55 3.66
541 542 2.810274 TCTTGCTTTGTGATCTCACTGC 59.190 45.455 11.35 12.22 46.55 4.40
542 543 2.259266 TGCTTTGTGATCTCACTGCA 57.741 45.000 15.49 15.49 46.55 4.41
543 544 1.875514 TGCTTTGTGATCTCACTGCAC 59.124 47.619 15.49 0.00 46.55 4.57
544 545 1.198637 GCTTTGTGATCTCACTGCACC 59.801 52.381 11.35 0.00 46.55 5.01
545 546 2.497138 CTTTGTGATCTCACTGCACCA 58.503 47.619 11.35 0.00 46.55 4.17
546 547 1.882912 TTGTGATCTCACTGCACCAC 58.117 50.000 11.35 0.00 46.55 4.16
547 548 1.051008 TGTGATCTCACTGCACCACT 58.949 50.000 11.35 0.00 46.55 4.00
548 549 1.270465 TGTGATCTCACTGCACCACTG 60.270 52.381 11.35 0.00 46.55 3.66
549 550 0.321034 TGATCTCACTGCACCACTGC 60.321 55.000 0.00 0.00 44.52 4.40
558 559 2.632643 GCACCACTGCATCAACAGA 58.367 52.632 0.00 0.00 43.62 3.41
559 560 0.520404 GCACCACTGCATCAACAGAG 59.480 55.000 0.00 0.00 43.62 3.35
560 561 1.879372 GCACCACTGCATCAACAGAGA 60.879 52.381 0.00 0.00 43.62 3.10
561 562 2.497138 CACCACTGCATCAACAGAGAA 58.503 47.619 0.00 0.00 40.25 2.87
562 563 2.880268 CACCACTGCATCAACAGAGAAA 59.120 45.455 0.00 0.00 40.25 2.52
563 564 3.316029 CACCACTGCATCAACAGAGAAAA 59.684 43.478 0.00 0.00 40.25 2.29
591 592 5.599751 AGGGTTAATTATCCTTTTGCCCTT 58.400 37.500 11.51 0.00 40.76 3.95
592 593 6.029431 AGGGTTAATTATCCTTTTGCCCTTT 58.971 36.000 11.51 0.00 40.76 3.11
617 618 2.358898 GTGTCCATGTGCTCAGTTTTGT 59.641 45.455 0.00 0.00 0.00 2.83
1020 1064 0.832135 TGTCTTCCTCAAGCTCCCGT 60.832 55.000 0.00 0.00 0.00 5.28
1160 1204 0.242555 TACGTGTGCAGCGAGAATGA 59.757 50.000 16.16 0.00 0.00 2.57
1239 1283 3.827876 TGATCTGTTTGGTGTTCATGCAT 59.172 39.130 0.00 0.00 0.00 3.96
1255 1299 4.021807 TCATGCATGTGACATGCTTCTTTT 60.022 37.500 39.67 20.71 43.71 2.27
1322 1366 2.799017 AGAGCATGAAGAATGGTTGCA 58.201 42.857 0.00 0.00 46.95 4.08
1405 1449 1.068264 CACGCACTGACAGAGAGCTAA 60.068 52.381 10.08 0.00 36.21 3.09
1437 1481 6.213600 AGCTTAGGATGTTGAAGAAGAAGGTA 59.786 38.462 0.00 0.00 0.00 3.08
1444 1488 6.248569 TGTTGAAGAAGAAGGTAAGGAAGT 57.751 37.500 0.00 0.00 0.00 3.01
1830 1934 0.322456 CATTCGGGGGTTCTCTTGCA 60.322 55.000 0.00 0.00 0.00 4.08
1831 1935 0.322546 ATTCGGGGGTTCTCTTGCAC 60.323 55.000 0.00 0.00 0.00 4.57
1840 1944 4.522789 GGGGTTCTCTTGCACATTTTTCTA 59.477 41.667 0.00 0.00 0.00 2.10
2025 2129 1.999648 TGGAAAATGTGCCTCAGCTT 58.000 45.000 0.00 0.00 40.80 3.74
2127 2233 4.914177 AAATGAAGGGTGGAAAATGCAT 57.086 36.364 0.00 0.00 0.00 3.96
2163 2269 2.669240 GGGACTCGAACCCAAGGG 59.331 66.667 18.78 2.91 46.05 3.95
2219 2325 0.107703 CCGCTAGGACAGATGGCAAA 60.108 55.000 0.00 0.00 41.02 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.306953 GCATATGGCATTTTTCAACACAAAAT 58.693 30.769 4.78 0.00 43.97 1.82
43 44 6.666417 GCATATGGCATTTTTCAACACAAAA 58.334 32.000 4.78 0.00 43.97 2.44
44 45 6.238610 GCATATGGCATTTTTCAACACAAA 57.761 33.333 4.78 0.00 43.97 2.83
45 46 5.859521 GCATATGGCATTTTTCAACACAA 57.140 34.783 4.78 0.00 43.97 3.33
56 57 5.915236 GCCTGTGCATTGCATATGGCATT 62.915 47.826 30.02 0.00 45.07 3.56
57 58 4.495392 GCCTGTGCATTGCATATGGCAT 62.495 50.000 30.02 4.88 45.07 4.40
58 59 3.232671 GCCTGTGCATTGCATATGGCA 62.233 52.381 30.02 17.96 44.07 4.92
59 60 0.599204 GCCTGTGCATTGCATATGGC 60.599 55.000 25.30 25.30 41.91 4.40
60 61 0.318360 CGCCTGTGCATTGCATATGG 60.318 55.000 15.49 16.76 41.91 2.74
61 62 0.318360 CCGCCTGTGCATTGCATATG 60.318 55.000 15.49 10.30 41.91 1.78
62 63 1.457823 CCCGCCTGTGCATTGCATAT 61.458 55.000 15.49 0.00 41.91 1.78
63 64 2.120282 CCCGCCTGTGCATTGCATA 61.120 57.895 15.49 11.45 41.91 3.14
64 65 3.454573 CCCGCCTGTGCATTGCAT 61.455 61.111 15.49 0.00 41.91 3.96
65 66 4.972733 ACCCGCCTGTGCATTGCA 62.973 61.111 7.38 7.38 37.32 4.08
66 67 4.120331 GACCCGCCTGTGCATTGC 62.120 66.667 0.46 0.46 37.32 3.56
67 68 2.672651 TGACCCGCCTGTGCATTG 60.673 61.111 0.00 0.00 37.32 2.82
68 69 2.672996 GTGACCCGCCTGTGCATT 60.673 61.111 0.00 0.00 37.32 3.56
80 81 2.731587 AAAATGCAGTGCGCGTGACC 62.732 55.000 11.20 0.00 46.97 4.02
81 82 0.110419 TAAAATGCAGTGCGCGTGAC 60.110 50.000 11.20 4.98 46.97 3.67
82 83 0.165727 CTAAAATGCAGTGCGCGTGA 59.834 50.000 11.20 0.00 46.97 4.35
83 84 1.398022 GCTAAAATGCAGTGCGCGTG 61.398 55.000 11.20 3.67 46.97 5.34
84 85 1.154225 GCTAAAATGCAGTGCGCGT 60.154 52.632 11.20 0.00 46.97 6.01
85 86 2.210375 CGCTAAAATGCAGTGCGCG 61.210 57.895 16.29 16.29 46.97 6.86
86 87 3.666730 CGCTAAAATGCAGTGCGC 58.333 55.556 11.20 0.00 40.15 6.09
88 89 2.499603 GCGCGCTAAAATGCAGTGC 61.500 57.895 26.67 8.58 44.28 4.40
89 90 1.129879 CAGCGCGCTAAAATGCAGTG 61.130 55.000 36.02 14.67 0.00 3.66
90 91 1.135315 CAGCGCGCTAAAATGCAGT 59.865 52.632 36.02 4.43 0.00 4.40
91 92 2.219562 GCAGCGCGCTAAAATGCAG 61.220 57.895 36.02 19.90 36.88 4.41
92 93 2.202466 GCAGCGCGCTAAAATGCA 60.202 55.556 36.02 0.00 36.88 3.96
115 116 3.694338 TAAAATGCAGCGCGCGTCG 62.694 57.895 32.35 22.92 46.97 5.12
116 117 1.929714 CTAAAATGCAGCGCGCGTC 60.930 57.895 32.35 22.88 46.97 5.19
117 118 2.098298 CTAAAATGCAGCGCGCGT 59.902 55.556 32.35 15.53 46.97 6.01
118 119 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
125 126 1.861542 AACGGCTGCGCTAAAATGCA 61.862 50.000 9.73 0.00 39.13 3.96
126 127 1.154035 AACGGCTGCGCTAAAATGC 60.154 52.632 9.73 3.28 0.00 3.56
127 128 0.798009 CCAACGGCTGCGCTAAAATG 60.798 55.000 9.73 0.60 0.00 2.32
128 129 0.958382 TCCAACGGCTGCGCTAAAAT 60.958 50.000 9.73 0.00 0.00 1.82
129 130 1.573829 CTCCAACGGCTGCGCTAAAA 61.574 55.000 9.73 0.00 0.00 1.52
130 131 2.031314 TCCAACGGCTGCGCTAAA 59.969 55.556 9.73 0.00 0.00 1.85
131 132 2.434185 CTCCAACGGCTGCGCTAA 60.434 61.111 9.73 0.00 0.00 3.09
163 164 3.434319 ATCAGCTGGTTTGGCGCG 61.434 61.111 15.13 0.00 34.52 6.86
164 165 2.180017 CATCAGCTGGTTTGGCGC 59.820 61.111 15.13 0.00 34.52 6.53
165 166 2.180017 GCATCAGCTGGTTTGGCG 59.820 61.111 15.13 0.00 37.91 5.69
166 167 2.180017 CGCATCAGCTGGTTTGGC 59.820 61.111 15.13 5.73 39.10 4.52
167 168 2.180017 GCGCATCAGCTGGTTTGG 59.820 61.111 15.13 0.00 39.10 3.28
168 169 2.202388 CGCGCATCAGCTGGTTTG 60.202 61.111 15.13 10.58 39.10 2.93
169 170 4.107051 GCGCGCATCAGCTGGTTT 62.107 61.111 29.10 0.00 39.10 3.27
177 178 3.864160 ATATGCCTCGCGCGCATCA 62.864 57.895 32.61 21.36 43.42 3.07
178 179 3.114616 ATATGCCTCGCGCGCATC 61.115 61.111 32.61 16.14 43.42 3.91
180 181 4.889856 ACATATGCCTCGCGCGCA 62.890 61.111 32.61 18.69 42.08 6.09
181 182 4.360027 CACATATGCCTCGCGCGC 62.360 66.667 27.95 23.91 42.08 6.86
182 183 2.035617 AAACACATATGCCTCGCGCG 62.036 55.000 26.76 26.76 42.08 6.86
183 184 0.098728 AAAACACATATGCCTCGCGC 59.901 50.000 0.00 0.00 38.31 6.86
184 185 2.542766 AAAAACACATATGCCTCGCG 57.457 45.000 0.00 0.00 0.00 5.87
213 214 4.383602 CAAAAGGCGCCGGTCGTG 62.384 66.667 23.20 12.36 41.07 4.35
216 217 3.431725 CTCCAAAAGGCGCCGGTC 61.432 66.667 23.20 0.00 0.00 4.79
217 218 3.268103 ATCTCCAAAAGGCGCCGGT 62.268 57.895 23.20 10.86 0.00 5.28
218 219 2.438434 ATCTCCAAAAGGCGCCGG 60.438 61.111 23.20 16.80 0.00 6.13
219 220 2.793946 CATCTCCAAAAGGCGCCG 59.206 61.111 23.20 6.32 0.00 6.46
220 221 1.997928 GAGCATCTCCAAAAGGCGCC 61.998 60.000 21.89 21.89 0.00 6.53
221 222 1.431036 GAGCATCTCCAAAAGGCGC 59.569 57.895 0.00 0.00 0.00 6.53
233 234 1.300233 CCCGCCGACTAAGAGCATC 60.300 63.158 0.00 0.00 0.00 3.91
234 235 2.058595 ACCCGCCGACTAAGAGCAT 61.059 57.895 0.00 0.00 0.00 3.79
235 236 2.678934 ACCCGCCGACTAAGAGCA 60.679 61.111 0.00 0.00 0.00 4.26
236 237 2.202756 CACCCGCCGACTAAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
237 238 2.494918 CCACCCGCCGACTAAGAG 59.505 66.667 0.00 0.00 0.00 2.85
238 239 3.072468 CCCACCCGCCGACTAAGA 61.072 66.667 0.00 0.00 0.00 2.10
239 240 2.951101 AACCCACCCGCCGACTAAG 61.951 63.158 0.00 0.00 0.00 2.18
240 241 2.924101 AACCCACCCGCCGACTAA 60.924 61.111 0.00 0.00 0.00 2.24
241 242 3.697747 CAACCCACCCGCCGACTA 61.698 66.667 0.00 0.00 0.00 2.59
250 251 3.963124 CTCCCATGCCCAACCCACC 62.963 68.421 0.00 0.00 0.00 4.61
251 252 2.362889 CTCCCATGCCCAACCCAC 60.363 66.667 0.00 0.00 0.00 4.61
252 253 2.534011 TCTCCCATGCCCAACCCA 60.534 61.111 0.00 0.00 0.00 4.51
253 254 2.276740 CTCTCCCATGCCCAACCC 59.723 66.667 0.00 0.00 0.00 4.11
254 255 2.440980 GCTCTCCCATGCCCAACC 60.441 66.667 0.00 0.00 0.00 3.77
255 256 1.452833 GAGCTCTCCCATGCCCAAC 60.453 63.158 6.43 0.00 0.00 3.77
256 257 3.001514 GAGCTCTCCCATGCCCAA 58.998 61.111 6.43 0.00 0.00 4.12
257 258 3.473647 CGAGCTCTCCCATGCCCA 61.474 66.667 12.85 0.00 0.00 5.36
258 259 3.453070 GACGAGCTCTCCCATGCCC 62.453 68.421 12.85 0.00 0.00 5.36
259 260 2.107953 GACGAGCTCTCCCATGCC 59.892 66.667 12.85 0.00 0.00 4.40
260 261 2.107953 GGACGAGCTCTCCCATGC 59.892 66.667 12.85 0.00 0.00 4.06
261 262 1.440893 CTGGACGAGCTCTCCCATG 59.559 63.158 22.03 13.89 0.00 3.66
262 263 1.760086 CCTGGACGAGCTCTCCCAT 60.760 63.158 22.03 1.42 0.00 4.00
263 264 2.363018 CCTGGACGAGCTCTCCCA 60.363 66.667 22.03 20.53 0.00 4.37
264 265 1.950973 GAACCTGGACGAGCTCTCCC 61.951 65.000 22.03 17.77 0.00 4.30
265 266 1.513622 GAACCTGGACGAGCTCTCC 59.486 63.158 19.58 19.58 0.00 3.71
266 267 1.137825 CGAACCTGGACGAGCTCTC 59.862 63.158 12.85 8.29 0.00 3.20
267 268 0.894184 TTCGAACCTGGACGAGCTCT 60.894 55.000 12.85 0.00 39.59 4.09
268 269 0.456995 CTTCGAACCTGGACGAGCTC 60.457 60.000 2.73 2.73 39.59 4.09
269 270 1.587054 CTTCGAACCTGGACGAGCT 59.413 57.895 16.38 0.00 39.59 4.09
270 271 2.095252 GCTTCGAACCTGGACGAGC 61.095 63.158 16.38 16.83 39.59 5.03
271 272 0.319555 TTGCTTCGAACCTGGACGAG 60.320 55.000 16.38 12.96 39.59 4.18
272 273 0.599204 GTTGCTTCGAACCTGGACGA 60.599 55.000 14.09 14.09 36.75 4.20
273 274 1.566018 GGTTGCTTCGAACCTGGACG 61.566 60.000 0.00 6.20 42.03 4.79
274 275 1.566018 CGGTTGCTTCGAACCTGGAC 61.566 60.000 0.00 0.00 42.97 4.02
275 276 1.301401 CGGTTGCTTCGAACCTGGA 60.301 57.895 0.00 0.00 42.97 3.86
276 277 2.325082 CCGGTTGCTTCGAACCTGG 61.325 63.158 0.00 0.00 42.97 4.45
277 278 2.325082 CCCGGTTGCTTCGAACCTG 61.325 63.158 0.00 0.00 42.97 4.00
278 279 2.032071 CCCGGTTGCTTCGAACCT 59.968 61.111 0.00 0.00 42.97 3.50
279 280 3.733960 GCCCGGTTGCTTCGAACC 61.734 66.667 0.00 0.00 41.89 3.62
280 281 4.084888 CGCCCGGTTGCTTCGAAC 62.085 66.667 0.00 0.00 0.00 3.95
294 295 4.096003 TTAGGCCAGTGCTCCGCC 62.096 66.667 5.01 6.40 43.35 6.13
295 296 2.512515 CTTAGGCCAGTGCTCCGC 60.513 66.667 5.01 0.00 37.74 5.54
296 297 2.512515 GCTTAGGCCAGTGCTCCG 60.513 66.667 5.01 0.00 37.74 4.63
297 298 1.451028 CAGCTTAGGCCAGTGCTCC 60.451 63.158 5.01 0.00 39.73 4.70
298 299 2.111582 GCAGCTTAGGCCAGTGCTC 61.112 63.158 5.01 2.00 39.73 4.26
299 300 2.045536 GCAGCTTAGGCCAGTGCT 60.046 61.111 5.01 8.17 39.73 4.40
300 301 2.360350 TGCAGCTTAGGCCAGTGC 60.360 61.111 5.01 5.53 39.73 4.40
301 302 1.002868 AGTGCAGCTTAGGCCAGTG 60.003 57.895 5.01 0.00 39.73 3.66
302 303 1.298014 GAGTGCAGCTTAGGCCAGT 59.702 57.895 5.01 0.00 39.73 4.00
303 304 0.321919 TTGAGTGCAGCTTAGGCCAG 60.322 55.000 5.01 0.00 39.73 4.85
304 305 0.321919 CTTGAGTGCAGCTTAGGCCA 60.322 55.000 5.01 0.00 39.73 5.36
305 306 0.322008 ACTTGAGTGCAGCTTAGGCC 60.322 55.000 0.00 0.00 39.73 5.19
306 307 1.198637 CAACTTGAGTGCAGCTTAGGC 59.801 52.381 0.00 0.00 39.06 3.93
307 308 2.498167 ACAACTTGAGTGCAGCTTAGG 58.502 47.619 0.00 0.00 0.00 2.69
308 309 4.285292 CAAACAACTTGAGTGCAGCTTAG 58.715 43.478 0.00 0.00 37.17 2.18
309 310 3.066621 CCAAACAACTTGAGTGCAGCTTA 59.933 43.478 0.00 0.00 37.17 3.09
310 311 2.159198 CCAAACAACTTGAGTGCAGCTT 60.159 45.455 0.00 0.00 37.17 3.74
311 312 1.406539 CCAAACAACTTGAGTGCAGCT 59.593 47.619 0.00 0.00 37.17 4.24
312 313 1.843992 CCAAACAACTTGAGTGCAGC 58.156 50.000 0.00 0.00 37.17 5.25
313 314 1.406539 AGCCAAACAACTTGAGTGCAG 59.593 47.619 0.00 0.00 37.17 4.41
314 315 1.405105 GAGCCAAACAACTTGAGTGCA 59.595 47.619 0.00 0.00 37.17 4.57
315 316 1.269257 GGAGCCAAACAACTTGAGTGC 60.269 52.381 0.00 0.00 37.17 4.40
316 317 1.002468 CGGAGCCAAACAACTTGAGTG 60.002 52.381 0.00 0.00 37.17 3.51
317 318 1.308998 CGGAGCCAAACAACTTGAGT 58.691 50.000 0.00 0.00 37.17 3.41
318 319 0.593128 CCGGAGCCAAACAACTTGAG 59.407 55.000 0.00 0.00 37.17 3.02
319 320 1.452145 GCCGGAGCCAAACAACTTGA 61.452 55.000 5.05 0.00 37.17 3.02
320 321 1.007387 GCCGGAGCCAAACAACTTG 60.007 57.895 5.05 0.00 34.52 3.16
321 322 1.152756 AGCCGGAGCCAAACAACTT 60.153 52.632 5.05 0.00 41.25 2.66
322 323 1.600916 GAGCCGGAGCCAAACAACT 60.601 57.895 5.05 0.00 41.25 3.16
323 324 2.626780 GGAGCCGGAGCCAAACAAC 61.627 63.158 5.05 0.00 41.25 3.32
324 325 2.282180 GGAGCCGGAGCCAAACAA 60.282 61.111 5.05 0.00 41.25 2.83
325 326 1.485294 TAAGGAGCCGGAGCCAAACA 61.485 55.000 5.05 0.00 41.25 2.83
326 327 0.107165 ATAAGGAGCCGGAGCCAAAC 60.107 55.000 5.05 0.00 41.25 2.93
327 328 0.623723 AATAAGGAGCCGGAGCCAAA 59.376 50.000 5.05 0.00 41.25 3.28
328 329 0.623723 AAATAAGGAGCCGGAGCCAA 59.376 50.000 5.05 0.00 41.25 4.52
329 330 0.623723 AAAATAAGGAGCCGGAGCCA 59.376 50.000 5.05 0.00 41.25 4.75
330 331 1.676529 GAAAAATAAGGAGCCGGAGCC 59.323 52.381 5.05 4.99 41.25 4.70
331 332 2.644676 AGAAAAATAAGGAGCCGGAGC 58.355 47.619 5.05 0.00 40.32 4.70
332 333 3.810386 GCTAGAAAAATAAGGAGCCGGAG 59.190 47.826 5.05 0.00 0.00 4.63
333 334 3.199071 TGCTAGAAAAATAAGGAGCCGGA 59.801 43.478 5.05 0.00 0.00 5.14
334 335 3.541632 TGCTAGAAAAATAAGGAGCCGG 58.458 45.455 0.00 0.00 0.00 6.13
335 336 3.561725 CCTGCTAGAAAAATAAGGAGCCG 59.438 47.826 0.00 0.00 0.00 5.52
336 337 4.781934 TCCTGCTAGAAAAATAAGGAGCC 58.218 43.478 0.00 0.00 30.44 4.70
339 340 5.186198 GCACTCCTGCTAGAAAAATAAGGA 58.814 41.667 0.00 0.00 40.63 3.36
340 341 4.943705 TGCACTCCTGCTAGAAAAATAAGG 59.056 41.667 0.00 0.00 44.57 2.69
341 342 6.500684 TTGCACTCCTGCTAGAAAAATAAG 57.499 37.500 0.00 0.00 44.57 1.73
342 343 6.500684 CTTGCACTCCTGCTAGAAAAATAA 57.499 37.500 0.00 0.00 45.91 1.40
350 351 2.233431 AGAAGTCTTGCACTCCTGCTAG 59.767 50.000 0.00 0.00 44.81 3.42
351 352 2.251818 AGAAGTCTTGCACTCCTGCTA 58.748 47.619 0.00 0.00 44.57 3.49
352 353 1.055040 AGAAGTCTTGCACTCCTGCT 58.945 50.000 0.00 0.00 44.57 4.24
353 354 1.889545 AAGAAGTCTTGCACTCCTGC 58.110 50.000 0.00 0.00 44.52 4.85
354 355 3.497640 CAGAAAGAAGTCTTGCACTCCTG 59.502 47.826 1.87 0.00 36.12 3.86
355 356 3.495806 CCAGAAAGAAGTCTTGCACTCCT 60.496 47.826 1.87 0.00 36.12 3.69
356 357 2.810852 CCAGAAAGAAGTCTTGCACTCC 59.189 50.000 1.87 0.00 36.12 3.85
357 358 2.810852 CCCAGAAAGAAGTCTTGCACTC 59.189 50.000 1.87 0.00 36.12 3.51
358 359 2.487986 CCCCAGAAAGAAGTCTTGCACT 60.488 50.000 1.87 0.00 36.12 4.40
359 360 1.882623 CCCCAGAAAGAAGTCTTGCAC 59.117 52.381 1.87 0.00 36.12 4.57
360 361 1.774254 TCCCCAGAAAGAAGTCTTGCA 59.226 47.619 1.87 0.00 36.12 4.08
361 362 2.155279 GTCCCCAGAAAGAAGTCTTGC 58.845 52.381 0.00 0.00 36.12 4.01
362 363 3.778954 AGTCCCCAGAAAGAAGTCTTG 57.221 47.619 0.00 0.00 36.12 3.02
363 364 3.459969 ACAAGTCCCCAGAAAGAAGTCTT 59.540 43.478 0.00 0.00 37.91 3.01
364 365 3.049344 ACAAGTCCCCAGAAAGAAGTCT 58.951 45.455 0.00 0.00 0.00 3.24
365 366 3.071747 AGACAAGTCCCCAGAAAGAAGTC 59.928 47.826 0.00 0.00 0.00 3.01
366 367 3.049344 AGACAAGTCCCCAGAAAGAAGT 58.951 45.455 0.00 0.00 0.00 3.01
367 368 3.778954 AGACAAGTCCCCAGAAAGAAG 57.221 47.619 0.00 0.00 0.00 2.85
368 369 5.843019 AATAGACAAGTCCCCAGAAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
369 370 6.023603 AGTAATAGACAAGTCCCCAGAAAGA 58.976 40.000 0.00 0.00 0.00 2.52
370 371 6.109359 CAGTAATAGACAAGTCCCCAGAAAG 58.891 44.000 0.00 0.00 0.00 2.62
371 372 5.570844 GCAGTAATAGACAAGTCCCCAGAAA 60.571 44.000 0.00 0.00 0.00 2.52
372 373 4.081087 GCAGTAATAGACAAGTCCCCAGAA 60.081 45.833 0.00 0.00 0.00 3.02
373 374 3.451178 GCAGTAATAGACAAGTCCCCAGA 59.549 47.826 0.00 0.00 0.00 3.86
374 375 3.738281 CGCAGTAATAGACAAGTCCCCAG 60.738 52.174 0.00 0.00 0.00 4.45
375 376 2.167693 CGCAGTAATAGACAAGTCCCCA 59.832 50.000 0.00 0.00 0.00 4.96
376 377 2.429610 TCGCAGTAATAGACAAGTCCCC 59.570 50.000 0.00 0.00 0.00 4.81
377 378 3.380637 TCTCGCAGTAATAGACAAGTCCC 59.619 47.826 0.00 0.00 0.00 4.46
378 379 4.352887 GTCTCGCAGTAATAGACAAGTCC 58.647 47.826 0.00 0.00 0.00 3.85
379 380 4.352887 GGTCTCGCAGTAATAGACAAGTC 58.647 47.826 0.00 0.00 0.00 3.01
380 381 3.130693 GGGTCTCGCAGTAATAGACAAGT 59.869 47.826 0.00 0.00 0.00 3.16
381 382 3.707793 GGGTCTCGCAGTAATAGACAAG 58.292 50.000 0.00 0.00 0.00 3.16
382 383 2.098607 CGGGTCTCGCAGTAATAGACAA 59.901 50.000 0.00 0.00 0.00 3.18
383 384 1.674441 CGGGTCTCGCAGTAATAGACA 59.326 52.381 0.00 0.00 0.00 3.41
384 385 1.945394 TCGGGTCTCGCAGTAATAGAC 59.055 52.381 0.00 0.00 39.05 2.59
385 386 2.158856 TCTCGGGTCTCGCAGTAATAGA 60.159 50.000 0.00 0.00 39.05 1.98
386 387 2.031857 GTCTCGGGTCTCGCAGTAATAG 60.032 54.545 0.00 0.00 39.05 1.73
387 388 1.945394 GTCTCGGGTCTCGCAGTAATA 59.055 52.381 0.00 0.00 39.05 0.98
388 389 0.739561 GTCTCGGGTCTCGCAGTAAT 59.260 55.000 0.00 0.00 39.05 1.89
389 390 0.322277 AGTCTCGGGTCTCGCAGTAA 60.322 55.000 0.00 0.00 39.05 2.24
390 391 0.322277 AAGTCTCGGGTCTCGCAGTA 60.322 55.000 0.00 0.00 39.05 2.74
391 392 1.179814 AAAGTCTCGGGTCTCGCAGT 61.180 55.000 0.00 0.00 39.05 4.40
392 393 0.456995 GAAAGTCTCGGGTCTCGCAG 60.457 60.000 0.00 0.00 39.05 5.18
393 394 1.585006 GAAAGTCTCGGGTCTCGCA 59.415 57.895 0.00 0.00 39.05 5.10
394 395 1.153804 GGAAAGTCTCGGGTCTCGC 60.154 63.158 0.00 0.00 39.05 5.03
395 396 0.966370 AGGGAAAGTCTCGGGTCTCG 60.966 60.000 0.00 0.00 40.90 4.04
396 397 0.818938 GAGGGAAAGTCTCGGGTCTC 59.181 60.000 0.00 0.00 0.00 3.36
397 398 0.114560 TGAGGGAAAGTCTCGGGTCT 59.885 55.000 0.00 0.00 34.19 3.85
398 399 0.974383 TTGAGGGAAAGTCTCGGGTC 59.026 55.000 0.00 0.00 34.19 4.46
399 400 1.430992 TTTGAGGGAAAGTCTCGGGT 58.569 50.000 0.00 0.00 34.19 5.28
400 401 2.561478 TTTTGAGGGAAAGTCTCGGG 57.439 50.000 0.00 0.00 34.19 5.14
421 422 3.003480 GCTGTCTCGGACTAGCATTTTT 58.997 45.455 15.99 0.00 37.00 1.94
422 423 2.622436 GCTGTCTCGGACTAGCATTTT 58.378 47.619 15.99 0.00 37.00 1.82
423 424 1.134670 GGCTGTCTCGGACTAGCATTT 60.135 52.381 19.32 0.00 37.93 2.32
424 425 0.461961 GGCTGTCTCGGACTAGCATT 59.538 55.000 19.32 0.00 37.93 3.56
425 426 0.396417 AGGCTGTCTCGGACTAGCAT 60.396 55.000 19.32 14.30 37.93 3.79
426 427 1.000771 AGGCTGTCTCGGACTAGCA 60.001 57.895 19.32 1.05 37.93 3.49
427 428 1.435515 CAGGCTGTCTCGGACTAGC 59.564 63.158 6.28 14.16 36.62 3.42
428 429 1.315981 TGCAGGCTGTCTCGGACTAG 61.316 60.000 17.16 0.00 33.15 2.57
429 430 1.304134 TGCAGGCTGTCTCGGACTA 60.304 57.895 17.16 0.00 33.15 2.59
430 431 2.601666 TGCAGGCTGTCTCGGACT 60.602 61.111 17.16 0.00 33.15 3.85
431 432 2.433318 GTGCAGGCTGTCTCGGAC 60.433 66.667 17.16 0.00 0.00 4.79
432 433 2.440385 CTTGTGCAGGCTGTCTCGGA 62.440 60.000 17.16 2.49 0.00 4.55
433 434 2.031012 TTGTGCAGGCTGTCTCGG 59.969 61.111 17.16 0.00 0.00 4.63
434 435 1.005748 TCTTGTGCAGGCTGTCTCG 60.006 57.895 17.16 1.70 0.00 4.04
435 436 0.034616 ACTCTTGTGCAGGCTGTCTC 59.965 55.000 17.16 9.78 0.00 3.36
436 437 0.471617 AACTCTTGTGCAGGCTGTCT 59.528 50.000 17.16 0.00 0.00 3.41
437 438 1.312815 AAACTCTTGTGCAGGCTGTC 58.687 50.000 17.16 9.10 0.00 3.51
438 439 1.767759 AAAACTCTTGTGCAGGCTGT 58.232 45.000 17.16 0.00 0.00 4.40
439 440 2.159198 ACAAAAACTCTTGTGCAGGCTG 60.159 45.455 10.94 10.94 38.12 4.85
440 441 2.102578 ACAAAAACTCTTGTGCAGGCT 58.897 42.857 0.00 0.00 38.12 4.58
441 442 2.584492 ACAAAAACTCTTGTGCAGGC 57.416 45.000 0.00 0.00 38.12 4.85
442 443 5.691754 GGAATAACAAAAACTCTTGTGCAGG 59.308 40.000 0.00 0.00 39.47 4.85
443 444 5.399301 CGGAATAACAAAAACTCTTGTGCAG 59.601 40.000 0.00 0.00 39.47 4.41
444 445 5.277825 CGGAATAACAAAAACTCTTGTGCA 58.722 37.500 0.00 0.00 39.47 4.57
445 446 4.679654 CCGGAATAACAAAAACTCTTGTGC 59.320 41.667 0.00 0.00 39.47 4.57
446 447 4.679654 GCCGGAATAACAAAAACTCTTGTG 59.320 41.667 5.05 0.00 39.47 3.33
447 448 4.583073 AGCCGGAATAACAAAAACTCTTGT 59.417 37.500 5.05 0.00 41.31 3.16
448 449 5.121221 AGCCGGAATAACAAAAACTCTTG 57.879 39.130 5.05 0.00 0.00 3.02
449 450 5.068591 ACAAGCCGGAATAACAAAAACTCTT 59.931 36.000 5.05 0.00 0.00 2.85
450 451 4.583073 ACAAGCCGGAATAACAAAAACTCT 59.417 37.500 5.05 0.00 0.00 3.24
451 452 4.866921 ACAAGCCGGAATAACAAAAACTC 58.133 39.130 5.05 0.00 0.00 3.01
452 453 4.929819 ACAAGCCGGAATAACAAAAACT 57.070 36.364 5.05 0.00 0.00 2.66
453 454 5.521544 TGTACAAGCCGGAATAACAAAAAC 58.478 37.500 5.05 0.00 0.00 2.43
454 455 5.769484 TGTACAAGCCGGAATAACAAAAA 57.231 34.783 5.05 0.00 0.00 1.94
455 456 5.968528 ATGTACAAGCCGGAATAACAAAA 57.031 34.783 5.05 0.00 0.00 2.44
456 457 7.051623 AGATATGTACAAGCCGGAATAACAAA 58.948 34.615 5.05 0.00 0.00 2.83
457 458 6.588204 AGATATGTACAAGCCGGAATAACAA 58.412 36.000 5.05 0.00 0.00 2.83
458 459 6.169557 AGATATGTACAAGCCGGAATAACA 57.830 37.500 5.05 2.11 0.00 2.41
459 460 6.929606 AGAAGATATGTACAAGCCGGAATAAC 59.070 38.462 5.05 0.00 0.00 1.89
460 461 7.062749 AGAAGATATGTACAAGCCGGAATAA 57.937 36.000 5.05 0.00 0.00 1.40
461 462 6.665992 AGAAGATATGTACAAGCCGGAATA 57.334 37.500 5.05 0.00 0.00 1.75
462 463 5.552870 AGAAGATATGTACAAGCCGGAAT 57.447 39.130 5.05 0.00 0.00 3.01
463 464 5.353394 AAGAAGATATGTACAAGCCGGAA 57.647 39.130 5.05 0.00 0.00 4.30
464 465 4.202223 GGAAGAAGATATGTACAAGCCGGA 60.202 45.833 5.05 0.00 0.00 5.14
465 466 4.058817 GGAAGAAGATATGTACAAGCCGG 58.941 47.826 0.00 0.00 0.00 6.13
466 467 4.508124 GTGGAAGAAGATATGTACAAGCCG 59.492 45.833 0.00 0.00 0.00 5.52
467 468 5.675538 AGTGGAAGAAGATATGTACAAGCC 58.324 41.667 0.00 0.00 0.00 4.35
468 469 5.755861 GGAGTGGAAGAAGATATGTACAAGC 59.244 44.000 0.00 0.00 0.00 4.01
469 470 6.878317 TGGAGTGGAAGAAGATATGTACAAG 58.122 40.000 0.00 0.00 0.00 3.16
470 471 6.867519 TGGAGTGGAAGAAGATATGTACAA 57.132 37.500 0.00 0.00 0.00 2.41
471 472 6.212589 TGTTGGAGTGGAAGAAGATATGTACA 59.787 38.462 0.00 0.00 0.00 2.90
472 473 6.640518 TGTTGGAGTGGAAGAAGATATGTAC 58.359 40.000 0.00 0.00 0.00 2.90
473 474 6.667848 TCTGTTGGAGTGGAAGAAGATATGTA 59.332 38.462 0.00 0.00 0.00 2.29
474 475 5.485353 TCTGTTGGAGTGGAAGAAGATATGT 59.515 40.000 0.00 0.00 0.00 2.29
475 476 5.982356 TCTGTTGGAGTGGAAGAAGATATG 58.018 41.667 0.00 0.00 0.00 1.78
476 477 5.960811 TCTCTGTTGGAGTGGAAGAAGATAT 59.039 40.000 0.00 0.00 42.40 1.63
477 478 5.333581 TCTCTGTTGGAGTGGAAGAAGATA 58.666 41.667 0.00 0.00 42.40 1.98
478 479 4.163427 TCTCTGTTGGAGTGGAAGAAGAT 58.837 43.478 0.00 0.00 42.40 2.40
479 480 3.576861 TCTCTGTTGGAGTGGAAGAAGA 58.423 45.455 0.00 0.00 42.40 2.87
480 481 4.342862 TTCTCTGTTGGAGTGGAAGAAG 57.657 45.455 0.00 0.00 42.40 2.85
481 482 4.771114 TTTCTCTGTTGGAGTGGAAGAA 57.229 40.909 0.00 0.00 42.40 2.52
482 483 4.444876 CCTTTTCTCTGTTGGAGTGGAAGA 60.445 45.833 0.00 0.00 42.40 2.87
483 484 3.817647 CCTTTTCTCTGTTGGAGTGGAAG 59.182 47.826 0.00 0.00 42.40 3.46
484 485 3.202151 ACCTTTTCTCTGTTGGAGTGGAA 59.798 43.478 0.00 0.00 42.40 3.53
485 486 2.777692 ACCTTTTCTCTGTTGGAGTGGA 59.222 45.455 0.00 0.00 42.40 4.02
486 487 3.214696 ACCTTTTCTCTGTTGGAGTGG 57.785 47.619 0.00 0.00 42.40 4.00
487 488 4.703897 TGTACCTTTTCTCTGTTGGAGTG 58.296 43.478 0.00 0.00 42.40 3.51
488 489 5.367945 TTGTACCTTTTCTCTGTTGGAGT 57.632 39.130 0.00 0.00 42.40 3.85
489 490 6.055588 TCTTTGTACCTTTTCTCTGTTGGAG 58.944 40.000 0.00 0.00 43.12 3.86
490 491 5.996644 TCTTTGTACCTTTTCTCTGTTGGA 58.003 37.500 0.00 0.00 0.00 3.53
491 492 5.278022 GCTCTTTGTACCTTTTCTCTGTTGG 60.278 44.000 0.00 0.00 0.00 3.77
492 493 5.296780 TGCTCTTTGTACCTTTTCTCTGTTG 59.703 40.000 0.00 0.00 0.00 3.33
493 494 5.437060 TGCTCTTTGTACCTTTTCTCTGTT 58.563 37.500 0.00 0.00 0.00 3.16
494 495 5.036117 TGCTCTTTGTACCTTTTCTCTGT 57.964 39.130 0.00 0.00 0.00 3.41
495 496 5.059833 ACTGCTCTTTGTACCTTTTCTCTG 58.940 41.667 0.00 0.00 0.00 3.35
496 497 5.297569 ACTGCTCTTTGTACCTTTTCTCT 57.702 39.130 0.00 0.00 0.00 3.10
497 498 6.261158 AGAAACTGCTCTTTGTACCTTTTCTC 59.739 38.462 0.00 0.00 0.00 2.87
498 499 6.122964 AGAAACTGCTCTTTGTACCTTTTCT 58.877 36.000 0.00 0.00 0.00 2.52
499 500 6.378710 AGAAACTGCTCTTTGTACCTTTTC 57.621 37.500 0.00 0.00 0.00 2.29
500 501 6.564328 CAAGAAACTGCTCTTTGTACCTTTT 58.436 36.000 0.00 0.00 33.25 2.27
501 502 5.450550 GCAAGAAACTGCTCTTTGTACCTTT 60.451 40.000 0.00 0.00 39.34 3.11
502 503 4.036852 GCAAGAAACTGCTCTTTGTACCTT 59.963 41.667 0.00 0.00 39.34 3.50
503 504 3.565902 GCAAGAAACTGCTCTTTGTACCT 59.434 43.478 0.00 0.00 39.34 3.08
504 505 3.890128 GCAAGAAACTGCTCTTTGTACC 58.110 45.455 0.00 0.00 39.34 3.34
514 515 4.225208 GAGATCACAAAGCAAGAAACTGC 58.775 43.478 0.00 0.00 42.97 4.40
515 516 5.210715 GTGAGATCACAAAGCAAGAAACTG 58.789 41.667 8.09 0.00 45.75 3.16
516 517 5.429957 GTGAGATCACAAAGCAAGAAACT 57.570 39.130 8.09 0.00 45.75 2.66
529 530 1.436600 CAGTGGTGCAGTGAGATCAC 58.563 55.000 4.77 4.77 46.77 3.06
530 531 3.921257 CAGTGGTGCAGTGAGATCA 57.079 52.632 0.00 0.00 36.99 2.92
541 542 2.174363 TCTCTGTTGATGCAGTGGTG 57.826 50.000 0.00 0.00 37.70 4.17
542 543 2.936919 TTCTCTGTTGATGCAGTGGT 57.063 45.000 0.00 0.00 37.70 4.16
543 544 4.572985 TTTTTCTCTGTTGATGCAGTGG 57.427 40.909 0.00 0.00 37.70 4.00
561 562 9.062524 GCAAAAGGATAATTAACCCTTGTTTTT 57.937 29.630 17.93 11.02 39.97 1.94
562 563 7.663905 GGCAAAAGGATAATTAACCCTTGTTTT 59.336 33.333 17.93 11.29 39.97 2.43
563 564 7.165485 GGCAAAAGGATAATTAACCCTTGTTT 58.835 34.615 17.93 10.27 39.97 2.83
591 592 0.182299 TGAGCACATGGACACCACAA 59.818 50.000 0.00 0.00 35.80 3.33
592 593 0.250424 CTGAGCACATGGACACCACA 60.250 55.000 0.00 0.00 35.80 4.17
617 618 1.065926 AGCACAATTCGCATCTGAGGA 60.066 47.619 0.00 0.00 0.00 3.71
889 920 1.739035 CGTGCTCTCTCTCTCTCTCGT 60.739 57.143 0.00 0.00 0.00 4.18
1160 1204 2.654863 CAATTGCCCCGATTCTTACCT 58.345 47.619 0.00 0.00 0.00 3.08
1255 1299 0.960364 GCCAGAGCATCGACCCAAAA 60.960 55.000 0.00 0.00 42.67 2.44
1322 1366 3.049674 CCGTTCGTGGCAGCATGT 61.050 61.111 0.00 0.00 39.31 3.21
1405 1449 4.623932 TCAACATCCTAAGCTCAACAGT 57.376 40.909 0.00 0.00 0.00 3.55
1437 1481 5.136105 AGTGCTTGATCTTCAAACTTCCTT 58.864 37.500 0.00 0.00 35.73 3.36
1444 1488 6.374333 GGTATTGGTAGTGCTTGATCTTCAAA 59.626 38.462 0.00 0.00 35.73 2.69
2025 2129 1.276989 CCTGGCGTAAACCTCTACCAA 59.723 52.381 0.00 0.00 0.00 3.67
2163 2269 4.622456 CACCACAAACCCACGCGC 62.622 66.667 5.73 0.00 0.00 6.86
2219 2325 4.540099 TCCTTCCCTATCCATGTCAAAGTT 59.460 41.667 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.