Multiple sequence alignment - TraesCS7A01G040100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G040100 chr7A 100.000 3681 0 0 1 3681 18104326 18100646 0.000000e+00 6798
1 TraesCS7A01G040100 chr6A 94.854 3090 101 15 618 3681 23199405 23196348 0.000000e+00 4772
2 TraesCS7A01G040100 chr3B 97.065 2317 48 3 1382 3681 761606651 761604338 0.000000e+00 3884
3 TraesCS7A01G040100 chr3B 96.518 1752 42 4 1382 3115 445998976 445997226 0.000000e+00 2880
4 TraesCS7A01G040100 chr3B 94.421 699 20 6 616 1295 761607351 761606653 0.000000e+00 1057
5 TraesCS7A01G040100 chr3B 93.983 698 22 5 617 1295 445999674 445998978 0.000000e+00 1038
6 TraesCS7A01G040100 chr3B 98.116 584 11 0 3098 3681 445990071 445989488 0.000000e+00 1018
7 TraesCS7A01G040100 chr3B 93.853 667 22 4 648 1295 771120376 771121042 0.000000e+00 987
8 TraesCS7A01G040100 chr3B 91.520 342 27 1 1162 1501 26475434 26475093 1.550000e-128 470
9 TraesCS7A01G040100 chr3B 97.794 272 6 0 1382 1653 771121044 771121315 1.550000e-128 470
10 TraesCS7A01G040100 chr1B 96.721 2318 57 4 1382 3681 587492618 587490302 0.000000e+00 3842
11 TraesCS7A01G040100 chr1B 93.974 697 23 4 618 1295 587493316 587492620 0.000000e+00 1037
12 TraesCS7A01G040100 chr1B 93.011 186 13 0 1316 1501 178484989 178485174 4.680000e-69 272
13 TraesCS7A01G040100 chr2A 96.620 1627 36 4 1382 2990 730605459 730607084 0.000000e+00 2682
14 TraesCS7A01G040100 chr2A 94.692 697 18 4 618 1295 730604761 730605457 0.000000e+00 1064
15 TraesCS7A01G040100 chrUn 99.589 1460 6 0 2222 3681 315539783 315538324 0.000000e+00 2663
16 TraesCS7A01G040100 chrUn 99.117 1133 10 0 617 1749 366254004 366255136 0.000000e+00 2037
17 TraesCS7A01G040100 chrUn 96.008 1052 25 2 1382 2416 392646078 392647129 0.000000e+00 1694
18 TraesCS7A01G040100 chr6B 99.589 1460 6 0 2222 3681 674921148 674922607 0.000000e+00 2663
19 TraesCS7A01G040100 chr6B 99.294 1133 8 0 617 1749 674919656 674920788 0.000000e+00 2049
20 TraesCS7A01G040100 chr6B 93.603 594 36 1 3088 3681 480824869 480825460 0.000000e+00 885
21 TraesCS7A01G040100 chr5B 97.985 1439 28 1 2244 3681 528556140 528557578 0.000000e+00 2495
22 TraesCS7A01G040100 chr5B 88.687 1485 124 27 1657 3112 484822874 484824343 0.000000e+00 1772
23 TraesCS7A01G040100 chr3D 96.063 889 17 2 1151 2021 556049535 556048647 0.000000e+00 1432
24 TraesCS7A01G040100 chr3D 95.779 616 25 1 2 616 479120392 479119777 0.000000e+00 992
25 TraesCS7A01G040100 chr3D 97.032 539 16 0 614 1152 556057988 556057450 0.000000e+00 907
26 TraesCS7A01G040100 chr2B 95.948 617 23 2 2 617 64901233 64900618 0.000000e+00 1000
27 TraesCS7A01G040100 chr2B 91.935 186 15 0 1316 1501 384660554 384660739 1.010000e-65 261
28 TraesCS7A01G040100 chr5D 94.634 615 32 1 2 615 433001044 433000430 0.000000e+00 952
29 TraesCS7A01G040100 chr5D 91.083 314 26 2 304 616 230493929 230493617 1.220000e-114 424
30 TraesCS7A01G040100 chr4A 93.994 616 36 1 2 616 713994220 713993605 0.000000e+00 931
31 TraesCS7A01G040100 chr1A 93.434 594 37 1 3088 3681 576244852 576245443 0.000000e+00 880
32 TraesCS7A01G040100 chr1D 92.370 616 46 1 2 616 485970690 485971305 0.000000e+00 876
33 TraesCS7A01G040100 chr1D 92.045 616 48 1 2 616 488738066 488737451 0.000000e+00 865
34 TraesCS7A01G040100 chr7D 91.883 616 44 3 2 616 626382664 626383274 0.000000e+00 856
35 TraesCS7A01G040100 chr2D 92.116 482 38 0 2 483 121764720 121765201 0.000000e+00 680
36 TraesCS7A01G040100 chr4B 92.330 339 24 1 1165 1501 141031482 141031144 7.150000e-132 481
37 TraesCS7A01G040100 chr7B 91.520 342 27 1 1162 1501 392013668 392014009 1.550000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G040100 chr7A 18100646 18104326 3680 True 6798.0 6798 100.0000 1 3681 1 chr7A.!!$R1 3680
1 TraesCS7A01G040100 chr6A 23196348 23199405 3057 True 4772.0 4772 94.8540 618 3681 1 chr6A.!!$R1 3063
2 TraesCS7A01G040100 chr3B 761604338 761607351 3013 True 2470.5 3884 95.7430 616 3681 2 chr3B.!!$R4 3065
3 TraesCS7A01G040100 chr3B 445997226 445999674 2448 True 1959.0 2880 95.2505 617 3115 2 chr3B.!!$R3 2498
4 TraesCS7A01G040100 chr3B 445989488 445990071 583 True 1018.0 1018 98.1160 3098 3681 1 chr3B.!!$R2 583
5 TraesCS7A01G040100 chr3B 771120376 771121315 939 False 728.5 987 95.8235 648 1653 2 chr3B.!!$F1 1005
6 TraesCS7A01G040100 chr1B 587490302 587493316 3014 True 2439.5 3842 95.3475 618 3681 2 chr1B.!!$R1 3063
7 TraesCS7A01G040100 chr2A 730604761 730607084 2323 False 1873.0 2682 95.6560 618 2990 2 chr2A.!!$F1 2372
8 TraesCS7A01G040100 chrUn 315538324 315539783 1459 True 2663.0 2663 99.5890 2222 3681 1 chrUn.!!$R1 1459
9 TraesCS7A01G040100 chrUn 366254004 366255136 1132 False 2037.0 2037 99.1170 617 1749 1 chrUn.!!$F1 1132
10 TraesCS7A01G040100 chrUn 392646078 392647129 1051 False 1694.0 1694 96.0080 1382 2416 1 chrUn.!!$F2 1034
11 TraesCS7A01G040100 chr6B 674919656 674922607 2951 False 2356.0 2663 99.4415 617 3681 2 chr6B.!!$F2 3064
12 TraesCS7A01G040100 chr6B 480824869 480825460 591 False 885.0 885 93.6030 3088 3681 1 chr6B.!!$F1 593
13 TraesCS7A01G040100 chr5B 528556140 528557578 1438 False 2495.0 2495 97.9850 2244 3681 1 chr5B.!!$F2 1437
14 TraesCS7A01G040100 chr5B 484822874 484824343 1469 False 1772.0 1772 88.6870 1657 3112 1 chr5B.!!$F1 1455
15 TraesCS7A01G040100 chr3D 556048647 556049535 888 True 1432.0 1432 96.0630 1151 2021 1 chr3D.!!$R2 870
16 TraesCS7A01G040100 chr3D 479119777 479120392 615 True 992.0 992 95.7790 2 616 1 chr3D.!!$R1 614
17 TraesCS7A01G040100 chr3D 556057450 556057988 538 True 907.0 907 97.0320 614 1152 1 chr3D.!!$R3 538
18 TraesCS7A01G040100 chr2B 64900618 64901233 615 True 1000.0 1000 95.9480 2 617 1 chr2B.!!$R1 615
19 TraesCS7A01G040100 chr5D 433000430 433001044 614 True 952.0 952 94.6340 2 615 1 chr5D.!!$R2 613
20 TraesCS7A01G040100 chr4A 713993605 713994220 615 True 931.0 931 93.9940 2 616 1 chr4A.!!$R1 614
21 TraesCS7A01G040100 chr1A 576244852 576245443 591 False 880.0 880 93.4340 3088 3681 1 chr1A.!!$F1 593
22 TraesCS7A01G040100 chr1D 485970690 485971305 615 False 876.0 876 92.3700 2 616 1 chr1D.!!$F1 614
23 TraesCS7A01G040100 chr1D 488737451 488738066 615 True 865.0 865 92.0450 2 616 1 chr1D.!!$R1 614
24 TraesCS7A01G040100 chr7D 626382664 626383274 610 False 856.0 856 91.8830 2 616 1 chr7D.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 444 0.034670 ATCTCCCAGGCTCAAAGTGC 60.035 55.0 0.0 0.0 0.00 4.40 F
588 589 0.037303 TCTCTTGGGGCTTCTTGCTG 59.963 55.0 0.0 0.0 42.39 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2285 1.838112 TGCATGGTTCCAAGGATCAC 58.162 50.000 0.00 0.0 0.0 3.06 R
2805 2956 6.546034 AGTTAACCTCCAAATATTTCCCATCG 59.454 38.462 0.88 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 288 3.193691 TCCTTTCGTGATCTCAACTCCTC 59.806 47.826 0.00 0.00 0.00 3.71
288 289 3.516615 CTTTCGTGATCTCAACTCCTCC 58.483 50.000 0.00 0.00 0.00 4.30
289 290 2.215942 TCGTGATCTCAACTCCTCCA 57.784 50.000 0.00 0.00 0.00 3.86
290 291 2.739943 TCGTGATCTCAACTCCTCCAT 58.260 47.619 0.00 0.00 0.00 3.41
291 292 3.099905 TCGTGATCTCAACTCCTCCATT 58.900 45.455 0.00 0.00 0.00 3.16
292 293 3.131223 TCGTGATCTCAACTCCTCCATTC 59.869 47.826 0.00 0.00 0.00 2.67
293 294 3.131933 CGTGATCTCAACTCCTCCATTCT 59.868 47.826 0.00 0.00 0.00 2.40
294 295 4.382470 CGTGATCTCAACTCCTCCATTCTT 60.382 45.833 0.00 0.00 0.00 2.52
295 296 5.163509 CGTGATCTCAACTCCTCCATTCTTA 60.164 44.000 0.00 0.00 0.00 2.10
296 297 6.045955 GTGATCTCAACTCCTCCATTCTTAC 58.954 44.000 0.00 0.00 0.00 2.34
297 298 5.129485 TGATCTCAACTCCTCCATTCTTACC 59.871 44.000 0.00 0.00 0.00 2.85
298 299 3.775316 TCTCAACTCCTCCATTCTTACCC 59.225 47.826 0.00 0.00 0.00 3.69
299 300 3.777522 CTCAACTCCTCCATTCTTACCCT 59.222 47.826 0.00 0.00 0.00 4.34
300 301 3.775316 TCAACTCCTCCATTCTTACCCTC 59.225 47.826 0.00 0.00 0.00 4.30
301 302 2.765502 ACTCCTCCATTCTTACCCTCC 58.234 52.381 0.00 0.00 0.00 4.30
302 303 2.319438 ACTCCTCCATTCTTACCCTCCT 59.681 50.000 0.00 0.00 0.00 3.69
303 304 2.703007 CTCCTCCATTCTTACCCTCCTG 59.297 54.545 0.00 0.00 0.00 3.86
304 305 1.141858 CCTCCATTCTTACCCTCCTGC 59.858 57.143 0.00 0.00 0.00 4.85
305 306 1.141858 CTCCATTCTTACCCTCCTGCC 59.858 57.143 0.00 0.00 0.00 4.85
306 307 0.918983 CCATTCTTACCCTCCTGCCA 59.081 55.000 0.00 0.00 0.00 4.92
307 308 1.284785 CCATTCTTACCCTCCTGCCAA 59.715 52.381 0.00 0.00 0.00 4.52
308 309 2.291540 CCATTCTTACCCTCCTGCCAAA 60.292 50.000 0.00 0.00 0.00 3.28
309 310 2.879103 TTCTTACCCTCCTGCCAAAG 57.121 50.000 0.00 0.00 0.00 2.77
310 311 2.038863 TCTTACCCTCCTGCCAAAGA 57.961 50.000 0.00 0.00 0.00 2.52
311 312 2.344592 TCTTACCCTCCTGCCAAAGAA 58.655 47.619 0.00 0.00 0.00 2.52
312 313 2.714250 TCTTACCCTCCTGCCAAAGAAA 59.286 45.455 0.00 0.00 0.00 2.52
313 314 2.879103 TACCCTCCTGCCAAAGAAAG 57.121 50.000 0.00 0.00 0.00 2.62
314 315 1.149101 ACCCTCCTGCCAAAGAAAGA 58.851 50.000 0.00 0.00 0.00 2.52
315 316 1.499007 ACCCTCCTGCCAAAGAAAGAA 59.501 47.619 0.00 0.00 0.00 2.52
316 317 2.165998 CCCTCCTGCCAAAGAAAGAAG 58.834 52.381 0.00 0.00 0.00 2.85
317 318 2.224867 CCCTCCTGCCAAAGAAAGAAGA 60.225 50.000 0.00 0.00 0.00 2.87
318 319 2.816672 CCTCCTGCCAAAGAAAGAAGAC 59.183 50.000 0.00 0.00 0.00 3.01
319 320 2.816672 CTCCTGCCAAAGAAAGAAGACC 59.183 50.000 0.00 0.00 0.00 3.85
320 321 1.889170 CCTGCCAAAGAAAGAAGACCC 59.111 52.381 0.00 0.00 0.00 4.46
321 322 1.889170 CTGCCAAAGAAAGAAGACCCC 59.111 52.381 0.00 0.00 0.00 4.95
322 323 1.499007 TGCCAAAGAAAGAAGACCCCT 59.501 47.619 0.00 0.00 0.00 4.79
323 324 2.091333 TGCCAAAGAAAGAAGACCCCTT 60.091 45.455 0.00 0.00 34.81 3.95
324 325 2.297315 GCCAAAGAAAGAAGACCCCTTG 59.703 50.000 0.00 0.00 31.62 3.61
325 326 2.297315 CCAAAGAAAGAAGACCCCTTGC 59.703 50.000 0.00 0.00 31.62 4.01
326 327 2.958355 CAAAGAAAGAAGACCCCTTGCA 59.042 45.455 0.00 0.00 31.62 4.08
327 328 2.575805 AGAAAGAAGACCCCTTGCAG 57.424 50.000 0.00 0.00 31.62 4.41
328 329 0.884514 GAAAGAAGACCCCTTGCAGC 59.115 55.000 0.00 0.00 31.62 5.25
329 330 0.480252 AAAGAAGACCCCTTGCAGCT 59.520 50.000 0.00 0.00 31.62 4.24
330 331 0.251077 AAGAAGACCCCTTGCAGCTG 60.251 55.000 10.11 10.11 31.62 4.24
331 332 1.073897 GAAGACCCCTTGCAGCTGT 59.926 57.895 16.64 0.00 31.62 4.40
332 333 0.957888 GAAGACCCCTTGCAGCTGTC 60.958 60.000 16.64 8.39 31.62 3.51
333 334 1.422161 AAGACCCCTTGCAGCTGTCT 61.422 55.000 16.64 5.21 37.88 3.41
334 335 1.673665 GACCCCTTGCAGCTGTCTG 60.674 63.158 16.64 5.34 43.16 3.51
335 336 2.116983 GACCCCTTGCAGCTGTCTGA 62.117 60.000 16.64 0.00 42.95 3.27
336 337 1.302285 CCCCTTGCAGCTGTCTGAT 59.698 57.895 16.64 0.00 42.95 2.90
337 338 0.323178 CCCCTTGCAGCTGTCTGATT 60.323 55.000 16.64 0.00 42.95 2.57
338 339 1.542492 CCCTTGCAGCTGTCTGATTT 58.458 50.000 16.64 0.00 42.95 2.17
339 340 1.471684 CCCTTGCAGCTGTCTGATTTC 59.528 52.381 16.64 0.00 42.95 2.17
340 341 2.156917 CCTTGCAGCTGTCTGATTTCA 58.843 47.619 16.64 0.00 42.95 2.69
341 342 2.161808 CCTTGCAGCTGTCTGATTTCAG 59.838 50.000 16.64 0.97 42.95 3.02
362 363 7.812690 TCAGACCAATTAATCTGATTCATGG 57.187 36.000 19.33 19.33 45.01 3.66
363 364 6.774170 TCAGACCAATTAATCTGATTCATGGG 59.226 38.462 22.38 18.73 45.01 4.00
364 365 6.015688 CAGACCAATTAATCTGATTCATGGGG 60.016 42.308 18.03 14.42 44.32 4.96
365 366 5.780731 ACCAATTAATCTGATTCATGGGGT 58.219 37.500 18.03 14.89 0.00 4.95
366 367 6.204555 ACCAATTAATCTGATTCATGGGGTT 58.795 36.000 18.03 0.80 0.00 4.11
367 368 6.098695 ACCAATTAATCTGATTCATGGGGTTG 59.901 38.462 18.03 5.74 0.00 3.77
368 369 5.796424 ATTAATCTGATTCATGGGGTTGC 57.204 39.130 6.10 0.00 0.00 4.17
369 370 2.077687 ATCTGATTCATGGGGTTGCC 57.922 50.000 0.00 0.00 0.00 4.52
370 371 0.703488 TCTGATTCATGGGGTTGCCA 59.297 50.000 0.00 0.00 0.00 4.92
371 372 1.076841 TCTGATTCATGGGGTTGCCAA 59.923 47.619 0.00 0.00 0.00 4.52
372 373 1.901159 CTGATTCATGGGGTTGCCAAA 59.099 47.619 0.00 0.00 0.00 3.28
373 374 2.302445 CTGATTCATGGGGTTGCCAAAA 59.698 45.455 0.00 0.00 0.00 2.44
374 375 2.707791 TGATTCATGGGGTTGCCAAAAA 59.292 40.909 0.00 0.00 0.00 1.94
392 393 2.078849 AAATTTGCTAAGGCGTTGGC 57.921 45.000 19.16 19.16 42.25 4.52
410 411 2.649831 CCATCAGGCTTGCAACACT 58.350 52.632 0.00 0.00 0.00 3.55
411 412 1.825090 CCATCAGGCTTGCAACACTA 58.175 50.000 0.00 0.00 0.00 2.74
412 413 2.372264 CCATCAGGCTTGCAACACTAT 58.628 47.619 0.00 0.00 0.00 2.12
413 414 2.756760 CCATCAGGCTTGCAACACTATT 59.243 45.455 0.00 0.00 0.00 1.73
414 415 3.428452 CCATCAGGCTTGCAACACTATTG 60.428 47.826 0.00 0.00 0.00 1.90
415 416 1.541147 TCAGGCTTGCAACACTATTGC 59.459 47.619 0.00 4.68 45.11 3.56
416 417 0.890683 AGGCTTGCAACACTATTGCC 59.109 50.000 14.06 14.06 44.32 4.52
417 418 0.890683 GGCTTGCAACACTATTGCCT 59.109 50.000 14.50 0.00 44.32 4.75
418 419 1.273327 GGCTTGCAACACTATTGCCTT 59.727 47.619 14.50 0.00 44.32 4.35
419 420 2.599659 GCTTGCAACACTATTGCCTTC 58.400 47.619 9.02 0.00 44.32 3.46
420 421 2.229784 GCTTGCAACACTATTGCCTTCT 59.770 45.455 9.02 0.00 44.32 2.85
421 422 3.671702 GCTTGCAACACTATTGCCTTCTC 60.672 47.826 9.02 0.00 44.32 2.87
422 423 3.423539 TGCAACACTATTGCCTTCTCT 57.576 42.857 9.02 0.00 44.32 3.10
423 424 3.338249 TGCAACACTATTGCCTTCTCTC 58.662 45.455 9.02 0.00 44.32 3.20
424 425 3.244526 TGCAACACTATTGCCTTCTCTCA 60.245 43.478 9.02 0.00 44.32 3.27
425 426 3.944015 GCAACACTATTGCCTTCTCTCAT 59.056 43.478 0.01 0.00 39.38 2.90
426 427 4.034975 GCAACACTATTGCCTTCTCTCATC 59.965 45.833 0.01 0.00 39.38 2.92
427 428 5.426504 CAACACTATTGCCTTCTCTCATCT 58.573 41.667 0.00 0.00 0.00 2.90
428 429 5.275067 ACACTATTGCCTTCTCTCATCTC 57.725 43.478 0.00 0.00 0.00 2.75
429 430 4.100808 ACACTATTGCCTTCTCTCATCTCC 59.899 45.833 0.00 0.00 0.00 3.71
430 431 3.645687 ACTATTGCCTTCTCTCATCTCCC 59.354 47.826 0.00 0.00 0.00 4.30
431 432 1.956869 TTGCCTTCTCTCATCTCCCA 58.043 50.000 0.00 0.00 0.00 4.37
432 433 1.493861 TGCCTTCTCTCATCTCCCAG 58.506 55.000 0.00 0.00 0.00 4.45
433 434 0.758123 GCCTTCTCTCATCTCCCAGG 59.242 60.000 0.00 0.00 0.00 4.45
434 435 0.758123 CCTTCTCTCATCTCCCAGGC 59.242 60.000 0.00 0.00 0.00 4.85
435 436 1.692121 CCTTCTCTCATCTCCCAGGCT 60.692 57.143 0.00 0.00 0.00 4.58
436 437 1.688197 CTTCTCTCATCTCCCAGGCTC 59.312 57.143 0.00 0.00 0.00 4.70
437 438 0.633378 TCTCTCATCTCCCAGGCTCA 59.367 55.000 0.00 0.00 0.00 4.26
438 439 1.007600 TCTCTCATCTCCCAGGCTCAA 59.992 52.381 0.00 0.00 0.00 3.02
439 440 1.836166 CTCTCATCTCCCAGGCTCAAA 59.164 52.381 0.00 0.00 0.00 2.69
440 441 1.836166 TCTCATCTCCCAGGCTCAAAG 59.164 52.381 0.00 0.00 0.00 2.77
441 442 1.558756 CTCATCTCCCAGGCTCAAAGT 59.441 52.381 0.00 0.00 0.00 2.66
442 443 1.280133 TCATCTCCCAGGCTCAAAGTG 59.720 52.381 0.00 0.00 0.00 3.16
443 444 0.034670 ATCTCCCAGGCTCAAAGTGC 60.035 55.000 0.00 0.00 0.00 4.40
444 445 1.130054 TCTCCCAGGCTCAAAGTGCT 61.130 55.000 0.00 0.00 0.00 4.40
445 446 0.251077 CTCCCAGGCTCAAAGTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
446 447 0.185901 TCCCAGGCTCAAAGTGCTTT 59.814 50.000 0.00 0.00 0.00 3.51
447 448 1.043022 CCCAGGCTCAAAGTGCTTTT 58.957 50.000 0.00 0.00 0.00 2.27
448 449 1.269936 CCCAGGCTCAAAGTGCTTTTG 60.270 52.381 7.64 7.64 46.09 2.44
449 450 1.410153 CCAGGCTCAAAGTGCTTTTGT 59.590 47.619 12.04 0.00 45.17 2.83
450 451 2.159057 CCAGGCTCAAAGTGCTTTTGTT 60.159 45.455 12.04 0.00 45.17 2.83
451 452 3.524541 CAGGCTCAAAGTGCTTTTGTTT 58.475 40.909 12.04 0.00 45.17 2.83
452 453 3.307782 CAGGCTCAAAGTGCTTTTGTTTG 59.692 43.478 12.04 0.00 45.17 2.93
453 454 2.030823 GGCTCAAAGTGCTTTTGTTTGC 59.969 45.455 12.04 13.24 45.17 3.68
454 455 2.672381 GCTCAAAGTGCTTTTGTTTGCA 59.328 40.909 12.04 0.00 45.17 4.08
455 456 3.124976 GCTCAAAGTGCTTTTGTTTGCAA 59.875 39.130 0.00 0.00 45.17 4.08
456 457 4.378253 GCTCAAAGTGCTTTTGTTTGCAAA 60.378 37.500 8.05 8.05 45.17 3.68
475 476 5.130292 CAAAAGGTGCATTCATGAGAACT 57.870 39.130 0.00 0.00 36.39 3.01
476 477 5.535333 CAAAAGGTGCATTCATGAGAACTT 58.465 37.500 0.00 0.00 36.39 2.66
477 478 5.796424 AAAGGTGCATTCATGAGAACTTT 57.204 34.783 0.00 0.00 36.39 2.66
478 479 6.899393 AAAGGTGCATTCATGAGAACTTTA 57.101 33.333 0.00 0.00 36.39 1.85
479 480 6.899393 AAGGTGCATTCATGAGAACTTTAA 57.101 33.333 0.00 0.00 36.39 1.52
480 481 6.899393 AGGTGCATTCATGAGAACTTTAAA 57.101 33.333 0.00 0.00 36.39 1.52
481 482 7.472334 AGGTGCATTCATGAGAACTTTAAAT 57.528 32.000 0.00 0.00 36.39 1.40
482 483 7.899973 AGGTGCATTCATGAGAACTTTAAATT 58.100 30.769 0.00 0.00 36.39 1.82
483 484 8.031277 AGGTGCATTCATGAGAACTTTAAATTC 58.969 33.333 0.00 0.00 36.39 2.17
484 485 7.008628 GGTGCATTCATGAGAACTTTAAATTCG 59.991 37.037 0.00 0.00 36.39 3.34
485 486 7.538678 GTGCATTCATGAGAACTTTAAATTCGT 59.461 33.333 0.00 0.00 36.39 3.85
486 487 8.081633 TGCATTCATGAGAACTTTAAATTCGTT 58.918 29.630 0.00 0.00 36.39 3.85
487 488 9.554724 GCATTCATGAGAACTTTAAATTCGTTA 57.445 29.630 0.00 0.00 36.39 3.18
494 495 9.607285 TGAGAACTTTAAATTCGTTAGAAATGC 57.393 29.630 0.00 0.00 40.15 3.56
495 496 9.827411 GAGAACTTTAAATTCGTTAGAAATGCT 57.173 29.630 0.00 0.00 40.15 3.79
496 497 9.612620 AGAACTTTAAATTCGTTAGAAATGCTG 57.387 29.630 0.00 0.00 40.15 4.41
497 498 7.796958 ACTTTAAATTCGTTAGAAATGCTGC 57.203 32.000 0.00 0.00 40.15 5.25
498 499 6.523201 ACTTTAAATTCGTTAGAAATGCTGCG 59.477 34.615 0.00 0.00 40.15 5.18
499 500 4.678509 AAATTCGTTAGAAATGCTGCGA 57.321 36.364 0.00 0.00 40.15 5.10
500 501 3.933155 ATTCGTTAGAAATGCTGCGAG 57.067 42.857 0.00 0.00 40.15 5.03
501 502 1.640428 TCGTTAGAAATGCTGCGAGG 58.360 50.000 0.00 0.00 33.59 4.63
502 503 0.652592 CGTTAGAAATGCTGCGAGGG 59.347 55.000 0.00 0.00 0.00 4.30
503 504 0.378610 GTTAGAAATGCTGCGAGGGC 59.621 55.000 0.00 0.00 40.52 5.19
504 505 0.253044 TTAGAAATGCTGCGAGGGCT 59.747 50.000 0.00 0.00 40.82 5.19
505 506 0.179073 TAGAAATGCTGCGAGGGCTC 60.179 55.000 0.00 0.00 40.82 4.70
506 507 1.451028 GAAATGCTGCGAGGGCTCT 60.451 57.895 0.00 0.00 40.82 4.09
507 508 1.712977 GAAATGCTGCGAGGGCTCTG 61.713 60.000 0.00 0.00 40.82 3.35
508 509 4.853050 ATGCTGCGAGGGCTCTGC 62.853 66.667 0.00 0.00 40.82 4.26
514 515 3.385384 CGAGGGCTCTGCACCAGA 61.385 66.667 0.00 0.00 38.25 3.86
515 516 2.947532 CGAGGGCTCTGCACCAGAA 61.948 63.158 0.00 0.00 40.18 3.02
516 517 1.078567 GAGGGCTCTGCACCAGAAG 60.079 63.158 0.00 0.00 40.18 2.85
517 518 1.537397 AGGGCTCTGCACCAGAAGA 60.537 57.895 0.00 0.00 40.18 2.87
518 519 1.130054 AGGGCTCTGCACCAGAAGAA 61.130 55.000 0.00 0.00 40.18 2.52
519 520 0.676151 GGGCTCTGCACCAGAAGAAG 60.676 60.000 0.00 0.00 40.18 2.85
520 521 0.322975 GGCTCTGCACCAGAAGAAGA 59.677 55.000 0.00 0.00 40.18 2.87
521 522 1.271054 GGCTCTGCACCAGAAGAAGAA 60.271 52.381 0.00 0.00 40.18 2.52
522 523 2.498167 GCTCTGCACCAGAAGAAGAAA 58.502 47.619 0.00 0.00 40.18 2.52
523 524 2.225255 GCTCTGCACCAGAAGAAGAAAC 59.775 50.000 0.00 0.00 40.18 2.78
524 525 3.470709 CTCTGCACCAGAAGAAGAAACA 58.529 45.455 0.00 0.00 40.18 2.83
525 526 3.879295 CTCTGCACCAGAAGAAGAAACAA 59.121 43.478 0.00 0.00 40.18 2.83
526 527 3.879295 TCTGCACCAGAAGAAGAAACAAG 59.121 43.478 0.00 0.00 37.57 3.16
527 528 2.358898 TGCACCAGAAGAAGAAACAAGC 59.641 45.455 0.00 0.00 0.00 4.01
528 529 2.603173 GCACCAGAAGAAGAAACAAGCG 60.603 50.000 0.00 0.00 0.00 4.68
529 530 2.031682 CACCAGAAGAAGAAACAAGCGG 60.032 50.000 0.00 0.00 0.00 5.52
530 531 2.222027 CCAGAAGAAGAAACAAGCGGT 58.778 47.619 0.00 0.00 0.00 5.68
531 532 2.031682 CCAGAAGAAGAAACAAGCGGTG 60.032 50.000 0.00 0.00 0.00 4.94
532 533 1.604278 AGAAGAAGAAACAAGCGGTGC 59.396 47.619 0.00 0.00 0.00 5.01
533 534 1.604278 GAAGAAGAAACAAGCGGTGCT 59.396 47.619 0.00 0.00 42.56 4.40
534 535 0.947244 AGAAGAAACAAGCGGTGCTG 59.053 50.000 0.00 0.00 39.62 4.41
535 536 0.944386 GAAGAAACAAGCGGTGCTGA 59.056 50.000 0.00 0.00 39.62 4.26
536 537 1.537202 GAAGAAACAAGCGGTGCTGAT 59.463 47.619 0.00 0.00 39.62 2.90
537 538 0.877071 AGAAACAAGCGGTGCTGATG 59.123 50.000 0.00 0.00 39.62 3.07
538 539 0.874390 GAAACAAGCGGTGCTGATGA 59.126 50.000 0.00 0.00 39.62 2.92
539 540 1.266718 GAAACAAGCGGTGCTGATGAA 59.733 47.619 0.00 0.00 39.62 2.57
540 541 1.317613 AACAAGCGGTGCTGATGAAA 58.682 45.000 0.00 0.00 39.62 2.69
541 542 1.317613 ACAAGCGGTGCTGATGAAAA 58.682 45.000 0.00 0.00 39.62 2.29
542 543 1.888512 ACAAGCGGTGCTGATGAAAAT 59.111 42.857 0.00 0.00 39.62 1.82
543 544 2.095059 ACAAGCGGTGCTGATGAAAATC 60.095 45.455 0.00 0.00 39.62 2.17
544 545 0.729116 AGCGGTGCTGATGAAAATCG 59.271 50.000 0.00 0.00 37.57 3.34
545 546 0.726827 GCGGTGCTGATGAAAATCGA 59.273 50.000 0.00 0.00 0.00 3.59
546 547 1.529826 GCGGTGCTGATGAAAATCGAC 60.530 52.381 0.00 0.00 0.00 4.20
547 548 1.731709 CGGTGCTGATGAAAATCGACA 59.268 47.619 0.00 0.00 0.00 4.35
548 549 2.352651 CGGTGCTGATGAAAATCGACAT 59.647 45.455 0.00 0.00 0.00 3.06
549 550 3.544834 CGGTGCTGATGAAAATCGACATC 60.545 47.826 6.76 6.76 41.94 3.06
550 551 3.624861 GGTGCTGATGAAAATCGACATCT 59.375 43.478 13.10 0.00 42.05 2.90
551 552 4.260538 GGTGCTGATGAAAATCGACATCTC 60.261 45.833 13.10 7.20 42.05 2.75
552 553 4.569966 GTGCTGATGAAAATCGACATCTCT 59.430 41.667 13.10 0.00 42.05 3.10
553 554 5.750547 GTGCTGATGAAAATCGACATCTCTA 59.249 40.000 13.10 0.16 42.05 2.43
554 555 6.256539 GTGCTGATGAAAATCGACATCTCTAA 59.743 38.462 13.10 0.00 42.05 2.10
555 556 6.818142 TGCTGATGAAAATCGACATCTCTAAA 59.182 34.615 13.10 0.00 42.05 1.85
556 557 7.010830 TGCTGATGAAAATCGACATCTCTAAAG 59.989 37.037 13.10 5.07 42.05 1.85
557 558 7.518052 GCTGATGAAAATCGACATCTCTAAAGG 60.518 40.741 13.10 0.46 42.05 3.11
558 559 7.331026 TGATGAAAATCGACATCTCTAAAGGT 58.669 34.615 13.10 0.00 42.05 3.50
559 560 7.824289 TGATGAAAATCGACATCTCTAAAGGTT 59.176 33.333 13.10 0.00 42.05 3.50
560 561 7.979444 TGAAAATCGACATCTCTAAAGGTTT 57.021 32.000 0.00 0.00 0.00 3.27
561 562 8.391075 TGAAAATCGACATCTCTAAAGGTTTT 57.609 30.769 0.00 0.00 0.00 2.43
562 563 8.289618 TGAAAATCGACATCTCTAAAGGTTTTG 58.710 33.333 0.00 0.00 0.00 2.44
563 564 7.979444 AAATCGACATCTCTAAAGGTTTTGA 57.021 32.000 0.00 0.00 0.00 2.69
564 565 6.969828 ATCGACATCTCTAAAGGTTTTGAC 57.030 37.500 0.00 0.00 0.00 3.18
565 566 5.849510 TCGACATCTCTAAAGGTTTTGACA 58.150 37.500 0.00 0.00 0.00 3.58
566 567 5.694910 TCGACATCTCTAAAGGTTTTGACAC 59.305 40.000 0.00 0.00 0.00 3.67
567 568 5.465390 CGACATCTCTAAAGGTTTTGACACA 59.535 40.000 0.00 0.00 0.00 3.72
568 569 6.564125 CGACATCTCTAAAGGTTTTGACACAC 60.564 42.308 0.00 0.00 0.00 3.82
569 570 6.357367 ACATCTCTAAAGGTTTTGACACACT 58.643 36.000 0.00 0.00 0.00 3.55
570 571 6.483640 ACATCTCTAAAGGTTTTGACACACTC 59.516 38.462 0.00 0.00 0.00 3.51
571 572 6.235231 TCTCTAAAGGTTTTGACACACTCT 57.765 37.500 0.00 0.00 0.00 3.24
572 573 6.281405 TCTCTAAAGGTTTTGACACACTCTC 58.719 40.000 0.00 0.00 0.00 3.20
573 574 6.098409 TCTCTAAAGGTTTTGACACACTCTCT 59.902 38.462 0.00 0.00 0.00 3.10
574 575 6.650120 TCTAAAGGTTTTGACACACTCTCTT 58.350 36.000 0.00 0.00 0.00 2.85
575 576 5.567138 AAAGGTTTTGACACACTCTCTTG 57.433 39.130 0.00 0.00 0.00 3.02
576 577 3.545703 AGGTTTTGACACACTCTCTTGG 58.454 45.455 0.00 0.00 0.00 3.61
577 578 2.618709 GGTTTTGACACACTCTCTTGGG 59.381 50.000 0.00 0.00 0.00 4.12
578 579 2.618709 GTTTTGACACACTCTCTTGGGG 59.381 50.000 0.00 0.00 0.00 4.96
579 580 0.108585 TTGACACACTCTCTTGGGGC 59.891 55.000 0.00 0.00 0.00 5.80
580 581 0.764369 TGACACACTCTCTTGGGGCT 60.764 55.000 0.00 0.00 0.00 5.19
581 582 0.398318 GACACACTCTCTTGGGGCTT 59.602 55.000 0.00 0.00 0.00 4.35
582 583 0.398318 ACACACTCTCTTGGGGCTTC 59.602 55.000 0.00 0.00 0.00 3.86
583 584 0.689623 CACACTCTCTTGGGGCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
584 585 1.072965 CACACTCTCTTGGGGCTTCTT 59.927 52.381 0.00 0.00 0.00 2.52
585 586 1.072965 ACACTCTCTTGGGGCTTCTTG 59.927 52.381 0.00 0.00 0.00 3.02
586 587 0.037447 ACTCTCTTGGGGCTTCTTGC 59.963 55.000 0.00 0.00 41.94 4.01
587 588 0.327591 CTCTCTTGGGGCTTCTTGCT 59.672 55.000 0.00 0.00 42.39 3.91
588 589 0.037303 TCTCTTGGGGCTTCTTGCTG 59.963 55.000 0.00 0.00 42.39 4.41
589 590 0.964358 CTCTTGGGGCTTCTTGCTGG 60.964 60.000 0.00 0.00 42.39 4.85
590 591 1.075482 CTTGGGGCTTCTTGCTGGA 59.925 57.895 0.00 0.00 42.39 3.86
591 592 0.964358 CTTGGGGCTTCTTGCTGGAG 60.964 60.000 0.00 0.00 42.39 3.86
592 593 1.719063 TTGGGGCTTCTTGCTGGAGT 61.719 55.000 0.00 0.00 42.39 3.85
593 594 1.676967 GGGGCTTCTTGCTGGAGTG 60.677 63.158 0.00 0.00 42.39 3.51
594 595 1.073897 GGGCTTCTTGCTGGAGTGT 59.926 57.895 0.00 0.00 42.39 3.55
595 596 0.538287 GGGCTTCTTGCTGGAGTGTT 60.538 55.000 0.00 0.00 42.39 3.32
596 597 0.595095 GGCTTCTTGCTGGAGTGTTG 59.405 55.000 0.00 0.00 42.39 3.33
597 598 0.039708 GCTTCTTGCTGGAGTGTTGC 60.040 55.000 0.00 0.00 38.95 4.17
598 599 0.236711 CTTCTTGCTGGAGTGTTGCG 59.763 55.000 0.00 0.00 0.00 4.85
599 600 1.165907 TTCTTGCTGGAGTGTTGCGG 61.166 55.000 0.00 0.00 0.00 5.69
600 601 2.594303 TTGCTGGAGTGTTGCGGG 60.594 61.111 0.00 0.00 0.00 6.13
603 604 4.641645 CTGGAGTGTTGCGGGCCA 62.642 66.667 4.39 0.00 0.00 5.36
604 605 4.641645 TGGAGTGTTGCGGGCCAG 62.642 66.667 4.39 0.00 0.00 4.85
605 606 4.329545 GGAGTGTTGCGGGCCAGA 62.330 66.667 7.23 0.00 0.00 3.86
606 607 2.743928 GAGTGTTGCGGGCCAGAG 60.744 66.667 7.23 0.00 0.00 3.35
607 608 4.335647 AGTGTTGCGGGCCAGAGG 62.336 66.667 7.23 0.00 0.00 3.69
608 609 4.329545 GTGTTGCGGGCCAGAGGA 62.330 66.667 7.23 0.00 0.00 3.71
609 610 3.329889 TGTTGCGGGCCAGAGGAT 61.330 61.111 7.23 0.00 0.00 3.24
610 611 2.044946 GTTGCGGGCCAGAGGATT 60.045 61.111 7.23 0.00 0.00 3.01
611 612 1.678970 GTTGCGGGCCAGAGGATTT 60.679 57.895 7.23 0.00 0.00 2.17
612 613 1.678635 TTGCGGGCCAGAGGATTTG 60.679 57.895 7.23 0.00 0.00 2.32
613 614 2.830370 GCGGGCCAGAGGATTTGG 60.830 66.667 7.23 0.00 38.78 3.28
614 615 2.677228 CGGGCCAGAGGATTTGGT 59.323 61.111 4.39 0.00 38.02 3.67
1840 1938 5.621193 ACCATTAAGTAAGCAAGTGACACT 58.379 37.500 1.07 1.07 0.00 3.55
1910 2032 2.500098 CCCTAGTAAGCAAGTGTGGCTA 59.500 50.000 0.00 0.00 41.66 3.93
2082 2204 3.236816 GTTCACACGATGCAAATGGAAG 58.763 45.455 0.00 0.00 0.00 3.46
2749 2900 1.491668 TTGCCCATACTTCCGAGCTA 58.508 50.000 0.00 0.00 0.00 3.32
2805 2956 2.396590 TACCAACCGCAAAGGAGATC 57.603 50.000 0.00 0.00 45.00 2.75
3620 3771 6.433093 GGTGGTGAACTAATTAGACCAAATGT 59.567 38.462 20.45 0.00 38.41 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.711704 ACGAGGAACCCATCAGATTACAT 59.288 43.478 0.00 0.00 0.00 2.29
287 288 0.918983 TGGCAGGAGGGTAAGAATGG 59.081 55.000 0.00 0.00 0.00 3.16
288 289 2.806945 TTGGCAGGAGGGTAAGAATG 57.193 50.000 0.00 0.00 0.00 2.67
289 290 2.919602 TCTTTGGCAGGAGGGTAAGAAT 59.080 45.455 0.00 0.00 0.00 2.40
290 291 2.344592 TCTTTGGCAGGAGGGTAAGAA 58.655 47.619 0.00 0.00 0.00 2.52
291 292 2.038863 TCTTTGGCAGGAGGGTAAGA 57.961 50.000 0.00 0.00 0.00 2.10
292 293 2.879103 TTCTTTGGCAGGAGGGTAAG 57.121 50.000 0.00 0.00 0.00 2.34
293 294 2.714250 TCTTTCTTTGGCAGGAGGGTAA 59.286 45.455 0.00 0.00 0.00 2.85
294 295 2.344592 TCTTTCTTTGGCAGGAGGGTA 58.655 47.619 0.00 0.00 0.00 3.69
295 296 1.149101 TCTTTCTTTGGCAGGAGGGT 58.851 50.000 0.00 0.00 0.00 4.34
296 297 2.165998 CTTCTTTCTTTGGCAGGAGGG 58.834 52.381 0.00 0.00 0.00 4.30
297 298 2.816672 GTCTTCTTTCTTTGGCAGGAGG 59.183 50.000 0.00 0.00 0.00 4.30
298 299 2.816672 GGTCTTCTTTCTTTGGCAGGAG 59.183 50.000 0.00 0.00 0.00 3.69
299 300 2.489073 GGGTCTTCTTTCTTTGGCAGGA 60.489 50.000 0.00 0.00 0.00 3.86
300 301 1.889170 GGGTCTTCTTTCTTTGGCAGG 59.111 52.381 0.00 0.00 0.00 4.85
301 302 1.889170 GGGGTCTTCTTTCTTTGGCAG 59.111 52.381 0.00 0.00 0.00 4.85
302 303 1.499007 AGGGGTCTTCTTTCTTTGGCA 59.501 47.619 0.00 0.00 0.00 4.92
303 304 2.294449 AGGGGTCTTCTTTCTTTGGC 57.706 50.000 0.00 0.00 0.00 4.52
304 305 2.297315 GCAAGGGGTCTTCTTTCTTTGG 59.703 50.000 0.00 0.00 0.00 3.28
305 306 2.958355 TGCAAGGGGTCTTCTTTCTTTG 59.042 45.455 0.00 0.00 0.00 2.77
306 307 3.225940 CTGCAAGGGGTCTTCTTTCTTT 58.774 45.455 0.00 0.00 0.00 2.52
307 308 2.868899 CTGCAAGGGGTCTTCTTTCTT 58.131 47.619 0.00 0.00 0.00 2.52
308 309 1.546548 GCTGCAAGGGGTCTTCTTTCT 60.547 52.381 0.00 0.00 0.00 2.52
309 310 0.884514 GCTGCAAGGGGTCTTCTTTC 59.115 55.000 0.00 0.00 0.00 2.62
310 311 0.480252 AGCTGCAAGGGGTCTTCTTT 59.520 50.000 1.02 0.00 0.00 2.52
311 312 0.251077 CAGCTGCAAGGGGTCTTCTT 60.251 55.000 0.00 0.00 0.00 2.52
312 313 1.377994 CAGCTGCAAGGGGTCTTCT 59.622 57.895 0.00 0.00 0.00 2.85
313 314 0.957888 GACAGCTGCAAGGGGTCTTC 60.958 60.000 15.27 0.00 0.00 2.87
314 315 1.073897 GACAGCTGCAAGGGGTCTT 59.926 57.895 15.27 0.00 0.00 3.01
315 316 1.845205 AGACAGCTGCAAGGGGTCT 60.845 57.895 15.27 4.08 34.19 3.85
316 317 1.673665 CAGACAGCTGCAAGGGGTC 60.674 63.158 15.27 1.36 34.95 4.46
317 318 1.495579 ATCAGACAGCTGCAAGGGGT 61.496 55.000 15.27 0.00 42.01 4.95
318 319 0.323178 AATCAGACAGCTGCAAGGGG 60.323 55.000 15.27 0.00 42.01 4.79
319 320 1.471684 GAAATCAGACAGCTGCAAGGG 59.528 52.381 15.27 0.00 42.01 3.95
320 321 2.156917 TGAAATCAGACAGCTGCAAGG 58.843 47.619 15.27 0.84 42.01 3.61
321 322 3.473093 CTGAAATCAGACAGCTGCAAG 57.527 47.619 15.27 3.33 46.59 4.01
339 340 6.015688 CCCCATGAATCAGATTAATTGGTCTG 60.016 42.308 9.06 13.01 42.46 3.51
340 341 6.073314 CCCCATGAATCAGATTAATTGGTCT 58.927 40.000 9.06 0.00 0.00 3.85
341 342 5.835280 ACCCCATGAATCAGATTAATTGGTC 59.165 40.000 9.06 0.00 0.00 4.02
342 343 5.780731 ACCCCATGAATCAGATTAATTGGT 58.219 37.500 9.06 7.45 0.00 3.67
343 344 6.518493 CAACCCCATGAATCAGATTAATTGG 58.482 40.000 4.16 4.16 0.00 3.16
344 345 5.987347 GCAACCCCATGAATCAGATTAATTG 59.013 40.000 0.00 0.00 0.00 2.32
345 346 5.070847 GGCAACCCCATGAATCAGATTAATT 59.929 40.000 0.00 0.00 0.00 1.40
346 347 4.590222 GGCAACCCCATGAATCAGATTAAT 59.410 41.667 0.00 0.00 0.00 1.40
347 348 3.960102 GGCAACCCCATGAATCAGATTAA 59.040 43.478 0.00 0.00 0.00 1.40
348 349 3.053019 TGGCAACCCCATGAATCAGATTA 60.053 43.478 0.00 0.00 39.18 1.75
349 350 2.292389 TGGCAACCCCATGAATCAGATT 60.292 45.455 0.00 0.00 39.18 2.40
350 351 1.288633 TGGCAACCCCATGAATCAGAT 59.711 47.619 0.00 0.00 39.18 2.90
351 352 0.703488 TGGCAACCCCATGAATCAGA 59.297 50.000 0.00 0.00 39.18 3.27
352 353 1.559368 TTGGCAACCCCATGAATCAG 58.441 50.000 0.00 0.00 44.89 2.90
353 354 2.021262 TTTGGCAACCCCATGAATCA 57.979 45.000 0.00 0.00 44.89 2.57
354 355 3.415457 TTTTTGGCAACCCCATGAATC 57.585 42.857 0.00 0.00 44.89 2.52
371 372 2.805671 GCCAACGCCTTAGCAAATTTTT 59.194 40.909 0.00 0.00 39.83 1.94
372 373 2.412870 GCCAACGCCTTAGCAAATTTT 58.587 42.857 0.00 0.00 39.83 1.82
373 374 2.078849 GCCAACGCCTTAGCAAATTT 57.921 45.000 0.00 0.00 39.83 1.82
374 375 3.812577 GCCAACGCCTTAGCAAATT 57.187 47.368 0.00 0.00 39.83 1.82
392 393 1.825090 TAGTGTTGCAAGCCTGATGG 58.175 50.000 0.00 0.00 0.00 3.51
393 394 3.766151 CAATAGTGTTGCAAGCCTGATG 58.234 45.455 0.00 0.00 0.00 3.07
394 395 2.165030 GCAATAGTGTTGCAAGCCTGAT 59.835 45.455 18.59 0.00 44.34 2.90
395 396 1.541147 GCAATAGTGTTGCAAGCCTGA 59.459 47.619 18.59 0.00 44.34 3.86
396 397 1.403249 GGCAATAGTGTTGCAAGCCTG 60.403 52.381 23.72 2.38 46.58 4.85
397 398 0.890683 GGCAATAGTGTTGCAAGCCT 59.109 50.000 23.72 9.19 46.58 4.58
398 399 0.890683 AGGCAATAGTGTTGCAAGCC 59.109 50.000 23.72 14.06 46.58 4.35
399 400 2.229784 AGAAGGCAATAGTGTTGCAAGC 59.770 45.455 23.72 12.71 46.58 4.01
400 401 3.755378 AGAGAAGGCAATAGTGTTGCAAG 59.245 43.478 23.72 0.00 46.58 4.01
401 402 3.753272 GAGAGAAGGCAATAGTGTTGCAA 59.247 43.478 23.72 0.00 46.58 4.08
402 403 3.244526 TGAGAGAAGGCAATAGTGTTGCA 60.245 43.478 23.72 0.35 46.58 4.08
403 404 3.338249 TGAGAGAAGGCAATAGTGTTGC 58.662 45.455 15.62 15.62 44.22 4.17
404 405 5.426504 AGATGAGAGAAGGCAATAGTGTTG 58.573 41.667 0.00 0.00 0.00 3.33
405 406 5.396213 GGAGATGAGAGAAGGCAATAGTGTT 60.396 44.000 0.00 0.00 0.00 3.32
406 407 4.100808 GGAGATGAGAGAAGGCAATAGTGT 59.899 45.833 0.00 0.00 0.00 3.55
407 408 4.502950 GGGAGATGAGAGAAGGCAATAGTG 60.503 50.000 0.00 0.00 0.00 2.74
408 409 3.645687 GGGAGATGAGAGAAGGCAATAGT 59.354 47.826 0.00 0.00 0.00 2.12
409 410 3.645212 TGGGAGATGAGAGAAGGCAATAG 59.355 47.826 0.00 0.00 0.00 1.73
410 411 3.645212 CTGGGAGATGAGAGAAGGCAATA 59.355 47.826 0.00 0.00 0.00 1.90
411 412 2.438763 CTGGGAGATGAGAGAAGGCAAT 59.561 50.000 0.00 0.00 0.00 3.56
412 413 1.836166 CTGGGAGATGAGAGAAGGCAA 59.164 52.381 0.00 0.00 0.00 4.52
413 414 1.493861 CTGGGAGATGAGAGAAGGCA 58.506 55.000 0.00 0.00 0.00 4.75
414 415 0.758123 CCTGGGAGATGAGAGAAGGC 59.242 60.000 0.00 0.00 0.00 4.35
415 416 0.758123 GCCTGGGAGATGAGAGAAGG 59.242 60.000 0.00 0.00 0.00 3.46
416 417 1.688197 GAGCCTGGGAGATGAGAGAAG 59.312 57.143 0.00 0.00 0.00 2.85
417 418 1.007600 TGAGCCTGGGAGATGAGAGAA 59.992 52.381 0.00 0.00 0.00 2.87
418 419 0.633378 TGAGCCTGGGAGATGAGAGA 59.367 55.000 0.00 0.00 0.00 3.10
419 420 1.493861 TTGAGCCTGGGAGATGAGAG 58.506 55.000 0.00 0.00 0.00 3.20
420 421 1.836166 CTTTGAGCCTGGGAGATGAGA 59.164 52.381 0.00 0.00 0.00 3.27
421 422 1.558756 ACTTTGAGCCTGGGAGATGAG 59.441 52.381 0.00 0.00 0.00 2.90
422 423 1.280133 CACTTTGAGCCTGGGAGATGA 59.720 52.381 0.00 0.00 0.00 2.92
423 424 1.747709 CACTTTGAGCCTGGGAGATG 58.252 55.000 0.00 0.00 0.00 2.90
424 425 0.034670 GCACTTTGAGCCTGGGAGAT 60.035 55.000 0.00 0.00 0.00 2.75
425 426 1.130054 AGCACTTTGAGCCTGGGAGA 61.130 55.000 0.00 0.00 0.00 3.71
426 427 0.251077 AAGCACTTTGAGCCTGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
427 428 0.185901 AAAGCACTTTGAGCCTGGGA 59.814 50.000 0.00 0.00 0.00 4.37
428 429 1.043022 AAAAGCACTTTGAGCCTGGG 58.957 50.000 0.00 0.00 32.36 4.45
429 430 1.410153 ACAAAAGCACTTTGAGCCTGG 59.590 47.619 15.79 0.00 46.35 4.45
430 431 2.877043 ACAAAAGCACTTTGAGCCTG 57.123 45.000 15.79 0.00 46.35 4.85
431 432 3.524541 CAAACAAAAGCACTTTGAGCCT 58.475 40.909 15.79 0.00 46.35 4.58
432 433 2.030823 GCAAACAAAAGCACTTTGAGCC 59.969 45.455 15.79 1.34 46.35 4.70
433 434 2.672381 TGCAAACAAAAGCACTTTGAGC 59.328 40.909 15.79 15.09 46.35 4.26
434 435 4.925061 TTGCAAACAAAAGCACTTTGAG 57.075 36.364 15.79 7.95 46.35 3.02
453 454 5.130292 AGTTCTCATGAATGCACCTTTTG 57.870 39.130 0.00 0.00 34.40 2.44
454 455 5.796424 AAGTTCTCATGAATGCACCTTTT 57.204 34.783 0.00 0.00 34.40 2.27
455 456 5.796424 AAAGTTCTCATGAATGCACCTTT 57.204 34.783 0.00 0.00 34.40 3.11
456 457 6.899393 TTAAAGTTCTCATGAATGCACCTT 57.101 33.333 0.00 0.00 34.40 3.50
457 458 6.899393 TTTAAAGTTCTCATGAATGCACCT 57.101 33.333 0.00 0.00 34.40 4.00
458 459 7.008628 CGAATTTAAAGTTCTCATGAATGCACC 59.991 37.037 0.00 0.00 34.40 5.01
459 460 7.538678 ACGAATTTAAAGTTCTCATGAATGCAC 59.461 33.333 0.00 0.00 34.40 4.57
460 461 7.592938 ACGAATTTAAAGTTCTCATGAATGCA 58.407 30.769 0.00 0.00 34.40 3.96
461 462 8.452989 AACGAATTTAAAGTTCTCATGAATGC 57.547 30.769 0.00 0.00 34.40 3.56
468 469 9.607285 GCATTTCTAACGAATTTAAAGTTCTCA 57.393 29.630 0.00 0.00 0.00 3.27
469 470 9.827411 AGCATTTCTAACGAATTTAAAGTTCTC 57.173 29.630 0.00 0.00 0.00 2.87
470 471 9.612620 CAGCATTTCTAACGAATTTAAAGTTCT 57.387 29.630 0.00 0.00 0.00 3.01
471 472 8.365938 GCAGCATTTCTAACGAATTTAAAGTTC 58.634 33.333 0.00 0.00 0.00 3.01
472 473 7.060633 CGCAGCATTTCTAACGAATTTAAAGTT 59.939 33.333 0.00 0.00 0.00 2.66
473 474 6.523201 CGCAGCATTTCTAACGAATTTAAAGT 59.477 34.615 0.00 0.00 0.00 2.66
474 475 6.740905 TCGCAGCATTTCTAACGAATTTAAAG 59.259 34.615 0.00 0.00 32.00 1.85
475 476 6.604012 TCGCAGCATTTCTAACGAATTTAAA 58.396 32.000 0.00 0.00 32.00 1.52
476 477 6.171932 TCGCAGCATTTCTAACGAATTTAA 57.828 33.333 0.00 0.00 32.00 1.52
477 478 5.220586 CCTCGCAGCATTTCTAACGAATTTA 60.221 40.000 0.00 0.00 33.82 1.40
478 479 4.437390 CCTCGCAGCATTTCTAACGAATTT 60.437 41.667 0.00 0.00 33.82 1.82
479 480 3.063997 CCTCGCAGCATTTCTAACGAATT 59.936 43.478 0.00 0.00 33.82 2.17
480 481 2.609459 CCTCGCAGCATTTCTAACGAAT 59.391 45.455 0.00 0.00 33.82 3.34
481 482 1.999735 CCTCGCAGCATTTCTAACGAA 59.000 47.619 0.00 0.00 33.82 3.85
482 483 1.640428 CCTCGCAGCATTTCTAACGA 58.360 50.000 0.00 0.00 33.36 3.85
483 484 0.652592 CCCTCGCAGCATTTCTAACG 59.347 55.000 0.00 0.00 0.00 3.18
484 485 0.378610 GCCCTCGCAGCATTTCTAAC 59.621 55.000 0.00 0.00 34.03 2.34
485 486 0.253044 AGCCCTCGCAGCATTTCTAA 59.747 50.000 0.00 0.00 37.52 2.10
486 487 0.179073 GAGCCCTCGCAGCATTTCTA 60.179 55.000 0.00 0.00 37.52 2.10
487 488 1.451028 GAGCCCTCGCAGCATTTCT 60.451 57.895 0.00 0.00 37.52 2.52
488 489 1.451028 AGAGCCCTCGCAGCATTTC 60.451 57.895 0.00 0.00 37.52 2.17
489 490 1.748122 CAGAGCCCTCGCAGCATTT 60.748 57.895 0.00 0.00 37.52 2.32
490 491 2.124819 CAGAGCCCTCGCAGCATT 60.125 61.111 0.00 0.00 37.52 3.56
491 492 4.853050 GCAGAGCCCTCGCAGCAT 62.853 66.667 0.00 0.00 37.52 3.79
497 498 2.849120 CTTCTGGTGCAGAGCCCTCG 62.849 65.000 0.00 0.00 41.75 4.63
498 499 1.078567 CTTCTGGTGCAGAGCCCTC 60.079 63.158 0.00 0.00 41.75 4.30
499 500 1.130054 TTCTTCTGGTGCAGAGCCCT 61.130 55.000 0.00 0.00 41.75 5.19
500 501 0.676151 CTTCTTCTGGTGCAGAGCCC 60.676 60.000 0.00 0.00 41.75 5.19
501 502 0.322975 TCTTCTTCTGGTGCAGAGCC 59.677 55.000 0.00 0.00 41.75 4.70
502 503 2.175878 TTCTTCTTCTGGTGCAGAGC 57.824 50.000 0.00 0.00 41.75 4.09
503 504 3.470709 TGTTTCTTCTTCTGGTGCAGAG 58.529 45.455 0.00 0.00 41.75 3.35
504 505 3.558931 TGTTTCTTCTTCTGGTGCAGA 57.441 42.857 0.00 0.00 38.87 4.26
505 506 3.549625 GCTTGTTTCTTCTTCTGGTGCAG 60.550 47.826 0.00 0.00 0.00 4.41
506 507 2.358898 GCTTGTTTCTTCTTCTGGTGCA 59.641 45.455 0.00 0.00 0.00 4.57
507 508 2.603173 CGCTTGTTTCTTCTTCTGGTGC 60.603 50.000 0.00 0.00 0.00 5.01
508 509 2.031682 CCGCTTGTTTCTTCTTCTGGTG 60.032 50.000 0.00 0.00 0.00 4.17
509 510 2.222027 CCGCTTGTTTCTTCTTCTGGT 58.778 47.619 0.00 0.00 0.00 4.00
510 511 2.031682 CACCGCTTGTTTCTTCTTCTGG 60.032 50.000 0.00 0.00 0.00 3.86
511 512 2.603173 GCACCGCTTGTTTCTTCTTCTG 60.603 50.000 0.00 0.00 0.00 3.02
512 513 1.604278 GCACCGCTTGTTTCTTCTTCT 59.396 47.619 0.00 0.00 0.00 2.85
513 514 1.604278 AGCACCGCTTGTTTCTTCTTC 59.396 47.619 0.00 0.00 33.89 2.87
514 515 1.334869 CAGCACCGCTTGTTTCTTCTT 59.665 47.619 0.00 0.00 36.40 2.52
515 516 0.947244 CAGCACCGCTTGTTTCTTCT 59.053 50.000 0.00 0.00 36.40 2.85
516 517 0.944386 TCAGCACCGCTTGTTTCTTC 59.056 50.000 0.00 0.00 36.40 2.87
517 518 1.267806 CATCAGCACCGCTTGTTTCTT 59.732 47.619 0.00 0.00 36.40 2.52
518 519 0.877071 CATCAGCACCGCTTGTTTCT 59.123 50.000 0.00 0.00 36.40 2.52
519 520 0.874390 TCATCAGCACCGCTTGTTTC 59.126 50.000 0.00 0.00 36.40 2.78
520 521 1.317613 TTCATCAGCACCGCTTGTTT 58.682 45.000 0.00 0.00 36.40 2.83
521 522 1.317613 TTTCATCAGCACCGCTTGTT 58.682 45.000 0.00 0.00 36.40 2.83
522 523 1.317613 TTTTCATCAGCACCGCTTGT 58.682 45.000 0.00 0.00 36.40 3.16
523 524 2.523015 GATTTTCATCAGCACCGCTTG 58.477 47.619 0.00 0.00 36.40 4.01
524 525 1.131126 CGATTTTCATCAGCACCGCTT 59.869 47.619 0.00 0.00 36.40 4.68
525 526 0.729116 CGATTTTCATCAGCACCGCT 59.271 50.000 0.00 0.00 40.77 5.52
526 527 0.726827 TCGATTTTCATCAGCACCGC 59.273 50.000 0.00 0.00 0.00 5.68
527 528 1.731709 TGTCGATTTTCATCAGCACCG 59.268 47.619 0.00 0.00 0.00 4.94
528 529 3.624861 AGATGTCGATTTTCATCAGCACC 59.375 43.478 14.12 0.00 41.74 5.01
529 530 4.569966 AGAGATGTCGATTTTCATCAGCAC 59.430 41.667 14.12 5.05 41.74 4.40
530 531 4.763073 AGAGATGTCGATTTTCATCAGCA 58.237 39.130 14.12 0.00 41.74 4.41
531 532 6.834959 TTAGAGATGTCGATTTTCATCAGC 57.165 37.500 14.12 7.26 41.74 4.26
532 533 7.493971 ACCTTTAGAGATGTCGATTTTCATCAG 59.506 37.037 14.12 4.55 41.74 2.90
533 534 7.331026 ACCTTTAGAGATGTCGATTTTCATCA 58.669 34.615 14.12 0.00 41.74 3.07
534 535 7.778470 ACCTTTAGAGATGTCGATTTTCATC 57.222 36.000 5.78 5.78 40.21 2.92
535 536 8.567285 AAACCTTTAGAGATGTCGATTTTCAT 57.433 30.769 0.00 0.00 0.00 2.57
536 537 7.979444 AAACCTTTAGAGATGTCGATTTTCA 57.021 32.000 0.00 0.00 0.00 2.69
537 538 8.504005 TCAAAACCTTTAGAGATGTCGATTTTC 58.496 33.333 0.00 0.00 0.00 2.29
538 539 8.290325 GTCAAAACCTTTAGAGATGTCGATTTT 58.710 33.333 0.00 0.00 0.00 1.82
539 540 7.444183 TGTCAAAACCTTTAGAGATGTCGATTT 59.556 33.333 0.00 0.00 0.00 2.17
540 541 6.934645 TGTCAAAACCTTTAGAGATGTCGATT 59.065 34.615 0.00 0.00 0.00 3.34
541 542 6.369065 GTGTCAAAACCTTTAGAGATGTCGAT 59.631 38.462 0.00 0.00 0.00 3.59
542 543 5.694910 GTGTCAAAACCTTTAGAGATGTCGA 59.305 40.000 0.00 0.00 0.00 4.20
543 544 5.465390 TGTGTCAAAACCTTTAGAGATGTCG 59.535 40.000 0.00 0.00 0.00 4.35
544 545 6.483640 AGTGTGTCAAAACCTTTAGAGATGTC 59.516 38.462 0.00 0.00 0.00 3.06
545 546 6.357367 AGTGTGTCAAAACCTTTAGAGATGT 58.643 36.000 0.00 0.00 0.00 3.06
546 547 6.708054 AGAGTGTGTCAAAACCTTTAGAGATG 59.292 38.462 0.00 0.00 0.00 2.90
547 548 6.831976 AGAGTGTGTCAAAACCTTTAGAGAT 58.168 36.000 0.00 0.00 0.00 2.75
548 549 6.098409 AGAGAGTGTGTCAAAACCTTTAGAGA 59.902 38.462 0.00 0.00 0.00 3.10
549 550 6.284459 AGAGAGTGTGTCAAAACCTTTAGAG 58.716 40.000 0.00 0.00 0.00 2.43
550 551 6.235231 AGAGAGTGTGTCAAAACCTTTAGA 57.765 37.500 0.00 0.00 0.00 2.10
551 552 6.238484 CCAAGAGAGTGTGTCAAAACCTTTAG 60.238 42.308 0.00 0.00 0.00 1.85
552 553 5.588648 CCAAGAGAGTGTGTCAAAACCTTTA 59.411 40.000 0.00 0.00 0.00 1.85
553 554 4.399303 CCAAGAGAGTGTGTCAAAACCTTT 59.601 41.667 0.00 0.00 0.00 3.11
554 555 3.947834 CCAAGAGAGTGTGTCAAAACCTT 59.052 43.478 0.00 0.00 0.00 3.50
555 556 3.545703 CCAAGAGAGTGTGTCAAAACCT 58.454 45.455 0.00 0.00 0.00 3.50
556 557 2.618709 CCCAAGAGAGTGTGTCAAAACC 59.381 50.000 0.00 0.00 0.00 3.27
557 558 2.618709 CCCCAAGAGAGTGTGTCAAAAC 59.381 50.000 0.00 0.00 0.00 2.43
558 559 2.930950 CCCCAAGAGAGTGTGTCAAAA 58.069 47.619 0.00 0.00 0.00 2.44
559 560 1.476833 GCCCCAAGAGAGTGTGTCAAA 60.477 52.381 0.00 0.00 0.00 2.69
560 561 0.108585 GCCCCAAGAGAGTGTGTCAA 59.891 55.000 0.00 0.00 0.00 3.18
561 562 0.764369 AGCCCCAAGAGAGTGTGTCA 60.764 55.000 0.00 0.00 0.00 3.58
562 563 0.398318 AAGCCCCAAGAGAGTGTGTC 59.602 55.000 0.00 0.00 0.00 3.67
563 564 0.398318 GAAGCCCCAAGAGAGTGTGT 59.602 55.000 0.00 0.00 0.00 3.72
564 565 0.689623 AGAAGCCCCAAGAGAGTGTG 59.310 55.000 0.00 0.00 0.00 3.82
565 566 1.072965 CAAGAAGCCCCAAGAGAGTGT 59.927 52.381 0.00 0.00 0.00 3.55
566 567 1.818642 CAAGAAGCCCCAAGAGAGTG 58.181 55.000 0.00 0.00 0.00 3.51
567 568 0.037447 GCAAGAAGCCCCAAGAGAGT 59.963 55.000 0.00 0.00 37.23 3.24
568 569 2.865492 GCAAGAAGCCCCAAGAGAG 58.135 57.895 0.00 0.00 37.23 3.20
578 579 0.039708 GCAACACTCCAGCAAGAAGC 60.040 55.000 0.00 0.00 46.19 3.86
579 580 0.236711 CGCAACACTCCAGCAAGAAG 59.763 55.000 0.00 0.00 0.00 2.85
580 581 1.165907 CCGCAACACTCCAGCAAGAA 61.166 55.000 0.00 0.00 0.00 2.52
581 582 1.597854 CCGCAACACTCCAGCAAGA 60.598 57.895 0.00 0.00 0.00 3.02
582 583 2.620112 CCCGCAACACTCCAGCAAG 61.620 63.158 0.00 0.00 0.00 4.01
583 584 2.594303 CCCGCAACACTCCAGCAA 60.594 61.111 0.00 0.00 0.00 3.91
586 587 4.641645 TGGCCCGCAACACTCCAG 62.642 66.667 0.00 0.00 0.00 3.86
587 588 4.641645 CTGGCCCGCAACACTCCA 62.642 66.667 0.00 0.00 0.00 3.86
588 589 4.329545 TCTGGCCCGCAACACTCC 62.330 66.667 0.00 0.00 0.00 3.85
589 590 2.743928 CTCTGGCCCGCAACACTC 60.744 66.667 0.00 0.00 0.00 3.51
590 591 4.335647 CCTCTGGCCCGCAACACT 62.336 66.667 0.00 0.00 0.00 3.55
591 592 3.628646 ATCCTCTGGCCCGCAACAC 62.629 63.158 0.00 0.00 0.00 3.32
592 593 2.424842 AAATCCTCTGGCCCGCAACA 62.425 55.000 0.00 0.00 0.00 3.33
593 594 1.678970 AAATCCTCTGGCCCGCAAC 60.679 57.895 0.00 0.00 0.00 4.17
594 595 1.678635 CAAATCCTCTGGCCCGCAA 60.679 57.895 0.00 0.00 0.00 4.85
595 596 2.045045 CAAATCCTCTGGCCCGCA 60.045 61.111 0.00 0.00 0.00 5.69
596 597 2.830370 CCAAATCCTCTGGCCCGC 60.830 66.667 0.00 0.00 0.00 6.13
597 598 1.750399 CACCAAATCCTCTGGCCCG 60.750 63.158 0.00 0.00 37.48 6.13
598 599 2.054453 GCACCAAATCCTCTGGCCC 61.054 63.158 0.00 0.00 37.48 5.80
599 600 2.054453 GGCACCAAATCCTCTGGCC 61.054 63.158 0.00 0.00 37.48 5.36
600 601 1.000396 AGGCACCAAATCCTCTGGC 60.000 57.895 0.00 0.00 37.48 4.85
601 602 1.318158 GCAGGCACCAAATCCTCTGG 61.318 60.000 0.00 0.00 40.05 3.86
602 603 1.651240 CGCAGGCACCAAATCCTCTG 61.651 60.000 0.00 0.00 0.00 3.35
603 604 1.377725 CGCAGGCACCAAATCCTCT 60.378 57.895 0.00 0.00 0.00 3.69
604 605 1.244019 AACGCAGGCACCAAATCCTC 61.244 55.000 0.00 0.00 0.00 3.71
605 606 0.827507 AAACGCAGGCACCAAATCCT 60.828 50.000 0.00 0.00 0.00 3.24
606 607 0.033366 AAAACGCAGGCACCAAATCC 59.967 50.000 0.00 0.00 0.00 3.01
607 608 1.139163 CAAAACGCAGGCACCAAATC 58.861 50.000 0.00 0.00 0.00 2.17
608 609 0.749649 TCAAAACGCAGGCACCAAAT 59.250 45.000 0.00 0.00 0.00 2.32
609 610 0.749649 ATCAAAACGCAGGCACCAAA 59.250 45.000 0.00 0.00 0.00 3.28
610 611 0.749649 AATCAAAACGCAGGCACCAA 59.250 45.000 0.00 0.00 0.00 3.67
611 612 0.749649 AAATCAAAACGCAGGCACCA 59.250 45.000 0.00 0.00 0.00 4.17
612 613 1.792367 GAAAATCAAAACGCAGGCACC 59.208 47.619 0.00 0.00 0.00 5.01
613 614 1.451651 CGAAAATCAAAACGCAGGCAC 59.548 47.619 0.00 0.00 0.00 5.01
614 615 1.601663 CCGAAAATCAAAACGCAGGCA 60.602 47.619 0.00 0.00 0.00 4.75
655 656 2.701606 GAGACGGCCGAAATTCGC 59.298 61.111 35.90 17.23 38.82 4.70
1790 1888 8.706492 TTGCTGACCATTGAAATTAATCATTC 57.294 30.769 0.00 0.00 0.00 2.67
1840 1938 3.136077 ACAGTACAGCCCGATCTACTAGA 59.864 47.826 0.00 0.00 0.00 2.43
2082 2204 4.832590 AGCTAGCAAATCAAGATCATGC 57.167 40.909 18.83 10.90 35.23 4.06
2163 2285 1.838112 TGCATGGTTCCAAGGATCAC 58.162 50.000 0.00 0.00 0.00 3.06
2805 2956 6.546034 AGTTAACCTCCAAATATTTCCCATCG 59.454 38.462 0.88 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.